HHsearch alignment for GI: 254780623 and conserved domain: cd05037
>cd05037 PTK_Jak_rpt1 Pseudokinase (Repeat 1) Domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki
Probab=98.17 E-value=9.2e-06 Score=63.84 Aligned_cols=148 Identities=11% Similarity=0.113 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517)
Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517)
T Consensus 1 E~iG~G~FG~Vykg~~r~~--~~~~~~~~~~---------------~~~-v~~k~~~~---------------~~~~~~~ 47 (259)
T cd05037 1 EHLGQGTFTNIYKGVLRVQ--SDLDGVSPGK---------------DIS-VVLKVLDQ---------------SHRDSLA 47 (259)
T ss_pred CCCCCCCCCEEEEEEECCC--CCCCCCCCCE---------------EEE-EEEEECCC---------------CCHHHHH
T ss_conf 9754898878998998689--8521000341---------------578-99984486---------------7328999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHC
Q ss_conf 5999988987202446776643000010221783353002478632426773320022---5689999999999989744
Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHD---LERLSVTLVQSFLLHTLRD 281 (517)
Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d---~~~la~~l~~~~~~qi~~~ 281 (517)
T Consensus 48 f~~e~~~l~~l~Hpn----Iv~l~g~~--~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~~~i~~~ia~g-l~yLH~~ 120 (259)
T cd05037 48 FFETASLMSQLSHKH----LVKLYGVC--VRDENIMVEEYVKFGPLDVFLHREKNNVTLHWKLDVAKQLASA-LHYLEDK 120 (259)
T ss_pred HHHHHHHHHHCCCCC----CCEEEEEE--EECCCEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHHHC
T ss_conf 999999998689978----77098999--9899889998389988999884258999999999999999999-9999729
Q ss_pred CEECCCCCCCEEEEECCCC-------EEEEECCHHEEC
Q ss_conf 8661787862289802895-------357434031216
Q gi|254780623|r 282 GFFHADLHPGNLFVDSKGY-------IVAVDMGITGRL 312 (517)
Q Consensus 282 GfFHaDPHpGNi~v~~dg~-------i~~lDfG~vg~l 312 (517)
T Consensus 121 ~iiHrDlK~~NILl~~~~~~~~~~~~~kl~Dfg~~~~~ 158 (259)
T cd05037 121 KLVHGNVCGKNILLAREGLNEGCVPFIKLSDPGIPITV 158 (259)
T ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCEEECCCCCCCCC
T ss_conf 95167765114897057876554541474357755304