HHsearch alignment for GI: 254780623 and conserved domain: cd05037

>cd05037 PTK_Jak_rpt1 Pseudokinase (Repeat 1) Domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki
Probab=98.17  E-value=9.2e-06  Score=63.84  Aligned_cols=148  Identities=11%  Similarity=0.113  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
T Consensus         1 E~iG~G~FG~Vykg~~r~~--~~~~~~~~~~---------------~~~-v~~k~~~~---------------~~~~~~~   47 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQ--SDLDGVSPGK---------------DIS-VVLKVLDQ---------------SHRDSLA   47 (259)
T ss_pred             CCCCCCCCCEEEEEEECCC--CCCCCCCCCE---------------EEE-EEEEECCC---------------CCHHHHH
T ss_conf             9754898878998998689--8521000341---------------578-99984486---------------7328999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHC
Q ss_conf             5999988987202446776643000010221783353002478632426773320022---5689999999999989744
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHD---LERLSVTLVQSFLLHTLRD  281 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d---~~~la~~l~~~~~~qi~~~  281 (517)
T Consensus        48 f~~e~~~l~~l~Hpn----Iv~l~g~~--~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~~~i~~~ia~g-l~yLH~~  120 (259)
T cd05037          48 FFETASLMSQLSHKH----LVKLYGVC--VRDENIMVEEYVKFGPLDVFLHREKNNVTLHWKLDVAKQLASA-LHYLEDK  120 (259)
T ss_pred             HHHHHHHHHHCCCCC----CCEEEEEE--EECCCEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHHHC
T ss_conf             999999998689978----77098999--9899889998389988999884258999999999999999999-9999729


Q ss_pred             CEECCCCCCCEEEEECCCC-------EEEEECCHHEEC
Q ss_conf             8661787862289802895-------357434031216
Q gi|254780623|r  282 GFFHADLHPGNLFVDSKGY-------IVAVDMGITGRL  312 (517)
Q Consensus       282 GfFHaDPHpGNi~v~~dg~-------i~~lDfG~vg~l  312 (517)
T Consensus       121 ~iiHrDlK~~NILl~~~~~~~~~~~~~kl~Dfg~~~~~  158 (259)
T cd05037         121 KLVHGNVCGKNILLAREGLNEGCVPFIKLSDPGIPITV  158 (259)
T ss_pred             CCCCCCCCCCEEEECCCCCCCCCCCCEEECCCCCCCCC
T ss_conf             95167765114897057876554541474357755304