HHsearch alignment for GI: 254780623 and conserved domain: cd05041

>cd05041 PTKc_Fes_like Catalytic Domain of Fes-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k
Probab=98.90  E-value=5.8e-09  Score=88.64  Aligned_cols=137  Identities=17%  Similarity=0.191  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
T Consensus         1 e~lG~G~fg~Vy~~~~~~---~~~vAvK~~~~~~~~~~~---------------------------------------~~   38 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKG---KTEVAVKTCRSTLPPDLK---------------------------------------RK   38 (251)
T ss_pred             CCCCCCCCCEEEEEEECC---CCEEEEEEECHHCCHHHH---------------------------------------HH
T ss_conf             977589884899999999---989999998620497899---------------------------------------99


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHHHHHHHHH
Q ss_conf             599998898720244677664300001022--1783353002478632426773320022568---99999999999897
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQSFLLHTL  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~~~~~qi~  279 (517)
T Consensus        39 ~~~E~~il~~l~H-----pnIv--~~~g~~~~~~~~~lvmEy~~~G~L~~~l~~~~~~~~~~~~~~i~~~ia~g-l~yLH  110 (251)
T cd05041          39 FLQEAEILKQYDH-----PNIV--KLIGVCVQKQPIYIVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAG-MEYLE  110 (251)
T ss_pred             HHHHHHHHHHCCC-----CCEE--EEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHH
T ss_conf             9999999985899-----9888--89789957998999998479996899997357999999999999999999-99883


Q ss_pred             HCCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             44866178786228980289535743403121
Q gi|254780623|r  280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
T Consensus       111 ~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~  142 (251)
T cd05041         111 SKNCIHRDLAARNCLVGENNVLKISDFGMSRE  142 (251)
T ss_pred             HCCCCCCCCCHHHEEECCCCCEEEEECCCCCC
T ss_conf             28952786154008988999189816588604