HHsearch alignment for GI: 254780623 and conserved domain: cd05045
>cd05045 PTKc_RET Catalytic Domain of the Protein Tyrosine Kinase, REarranged during Transfection protein. Protein Tyrosine Kinase (PTK) family; RET (rearranged during transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi
Probab=98.47 E-value=2.6e-06 Score=68.11 Aligned_cols=142 Identities=13% Similarity=0.164 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHEEC---CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 6778888655550212---8887236876403104688777788999875321146854334691799999998878886
Q gi|254780623|r 127 IAAASIAQVHPAVVHD---INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM 203 (517)
Q Consensus 127 lasASiaQVh~A~l~d---~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El 203 (517)
T Consensus 3 iG~G~fG~Vyk~~~~~~~~~~~~~~vAvK~l~~~~~~--------------------------------~~-------~~ 43 (285)
T cd05045 3 LGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASS--------------------------------SE-------LR 43 (285)
T ss_pred CCCCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCCH--------------------------------HH-------HH
T ss_conf 3448896899999805677658989999997767997--------------------------------99-------99
Q ss_pred HHHHHHHHHHHHHCCCCCCCCC-CCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHH-----------------------H
Q ss_conf 5599998898720244677664-300001022178335300247863242677332-----------------------0
Q gi|254780623|r 204 DLRLEAAAFSEMAENTVKDQGF-RVPKIDWNRTERDVITMEWIDGVKISDTEKLRA-----------------------C 259 (517)
Q Consensus 204 D~~~Ea~n~~~~~~~~~~~~~v-~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~-----------------------~ 259 (517)
T Consensus 44 ~~~~E~~~l~~l~H-----pNIV~~~g~~~~-~~~~~lv~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (285)
T cd05045 44 DLLSEFNLLKQVNH-----PHVIKLYGACSQ-DGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDER 117 (285)
T ss_pred HHHHHHHHHHHCCC-----CCEEEEEEEEEE-CCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999986799-----887307999978-997799997478992999999733346432233222232112464334
Q ss_pred CCCHH---HHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf 02256---89999999999989744866178786228980289535743403121698
Q gi|254780623|r 260 GHDLE---RLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517)
Q Consensus 260 ~~d~~---~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517)
T Consensus 118 ~l~~~~~~~~a~qia~g-l~yLH~~~iiHRDlK~~NILl~~~~~~Ki~DFGls~~~~~ 174 (285)
T cd05045 118 ALTMGDLISFAWQISRG-MQYLAEMKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYE 174 (285)
T ss_pred CCCHHHHHHHHHHHHHH-HHHHHHCCCEECCCCCCEEEECCCCCEEEECCCCCCCCCC
T ss_conf 77899999999999999-9998748906056774728886899688711511101356