HHsearch alignment for GI: 254780623 and conserved domain: cd05048

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like orphan receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer
Probab=98.57  E-value=2.6e-07  Score=75.86  Aligned_cols=146  Identities=14%  Similarity=0.190  Sum_probs=90.3

Q ss_pred             HHHHH--HHHHHHHHHHHHHHHEEC---CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf             99867--666778888655550212---8887236876403104688777788999875321146854334691799999
Q gi|254780623|r  120 YCEFD--DPIAAASIAQVHPAVVHD---INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRA  194 (517)
Q Consensus       120 F~~fd--ePlasASiaQVh~A~l~d---~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e  194 (517)
T Consensus         4 ~~~~~~~e~IG~G~fG~Vykg~~~~~~~~~~~~~VaiK~l~~~~~---------------------~--------~~~--   52 (283)
T cd05048           4 LSAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAE---------------------P--------KVQ--   52 (283)
T ss_pred             HHHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCC---------------------H--------HHH--
T ss_conf             799898369715888389999983788760677999999883269---------------------7--------899--


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC---CCEEEEECCCCCCCCHHHHHH--------------
Q ss_conf             998878886559999889872024467766430000102217---833530024786324267733--------------
Q gi|254780623|r  195 LEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE---RDVITMEWIDGVKISDTEKLR--------------  257 (517)
Q Consensus       195 ~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st---~~VLvmE~i~G~~i~d~~~l~--------------  257 (517)
T Consensus        53 --------~~f~~E~~~l~~l~H-----pnI--v~~~g-~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~  116 (283)
T cd05048          53 --------QEFRQEAELMSDLQH-----PNI--VCLLG-VCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDET  116 (283)
T ss_pred             --------HHHHHHHHHHHHCCC-----CCE--EEEEE-EEEECCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             --------999999999985899-----897--31889-99668866999991699908999986187642111123333


Q ss_pred             -HHCCCH---HHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             -200225---68999999999998974486617878622898028953574340312169
Q gi|254780623|r  258 -ACGHDL---ERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       258 -~~~~d~---~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
T Consensus       117 ~~~~l~~~~~~~i~~~ia~gl-~yLH~~~IvHrDlK~~NILl~~~~~~Ki~DFGla~~~~  175 (283)
T cd05048         117 VKSSLDCSDFLHIAIQIAAGM-EYLSSHHFVHRDLAARNCLVGEGLTVKISDFGLSRDIY  175 (283)
T ss_pred             CCCCCCHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCC
T ss_conf             357799999999999999999-99986890777556175898899938998604750567