HHsearch alignment for GI: 254780623 and conserved domain: cd05051
>cd05051 PTKc_DDR Catalytic Domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors. Protein Tyrosine Kinase (PTK) family; Discoidin domain receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke
Probab=98.73 E-value=2e-07 Score=76.65 Aligned_cols=142 Identities=17% Similarity=0.219 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHHEEC--------------CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 7666778888655550212--------------88872368764031046887777889998753211468543346917
Q gi|254780623|r 124 DDPIAAASIAQVHPAVVHD--------------INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFS 189 (517)
Q Consensus 124 dePlasASiaQVh~A~l~d--------------~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~ 189 (517)
T Consensus 10 ~~~iG~G~FG~Vy~a~~~~~~~~~~~~~~~~~~~~~~~~VAvK~l~~~~~~~---------------------------- 61 (296)
T cd05051 10 VEKLGEGQFGEVHLCEAEGLQDFSEKAFAENDSADAPRLVAVKKLRPDASDN---------------------------- 61 (296)
T ss_pred EEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHH----------------------------
T ss_conf 0698228881999707748764321111124557776589999978768978----------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC---CCCEEEEECCCCCCCCHHHHHHH--------
Q ss_conf 9999999887888655999988987202446776643000010221---78335300247863242677332--------
Q gi|254780623|r 190 AVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT---ERDVITMEWIDGVKISDTEKLRA-------- 258 (517)
Q Consensus 190 ~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s---t~~VLvmE~i~G~~i~d~~~l~~-------- 258 (517)
T Consensus 62 -----------~~~~f~~Ei~il~~l~H-----pnI--v~~~g-~~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~ 122 (296)
T cd05051 62 -----------AREDFLKEVKILSRLSD-----PNI--ARLLG-VCTQDPPLCMIMEYMENGDLNQFLQKHVAETSGLAC 122 (296)
T ss_pred -----------HHHHHHHHHHHHHHCCC-----CCC--CCEEE-EEEECCEEEEEEEECCCCCHHHHHHHCCCCCCCCCC
T ss_conf -----------99999999999986899-----488--87989-998899889999906899789999863565432001
Q ss_pred --HCCCH---HHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf --00225---68999999999998974486617878622898028953574340312169
Q gi|254780623|r 259 --CGHDL---ERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517)
Q Consensus 259 --~~~d~---~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517)
T Consensus 123 ~~~~l~~~~~~~i~~qia~gl-~yLh~~~iiHrDlK~~NiLl~~~~~~Ki~DFGlsr~~~ 181 (296)
T cd05051 123 NSKTLSFSTLLYMATQIASGM-KYLESLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLY 181 (296)
T ss_pred CCCCCCHHHHHHHHHHHHHHH-HHHHHCCEECCCCCCCEEEECCCCCEEEEECCCCCCCC
T ss_conf 357789999999999999999-99977993447567265998899989998656773457