HHsearch alignment for GI: 254780623 and conserved domain: cd05051

>cd05051 PTKc_DDR Catalytic Domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors. Protein Tyrosine Kinase (PTK) family; Discoidin domain receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke
Probab=98.73  E-value=2e-07  Score=76.65  Aligned_cols=142  Identities=17%  Similarity=0.219  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHHHHEEC--------------CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf             7666778888655550212--------------88872368764031046887777889998753211468543346917
Q gi|254780623|r  124 DDPIAAASIAQVHPAVVHD--------------INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFS  189 (517)
Q Consensus       124 dePlasASiaQVh~A~l~d--------------~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~  189 (517)
T Consensus        10 ~~~iG~G~FG~Vy~a~~~~~~~~~~~~~~~~~~~~~~~~VAvK~l~~~~~~~----------------------------   61 (296)
T cd05051          10 VEKLGEGQFGEVHLCEAEGLQDFSEKAFAENDSADAPRLVAVKKLRPDASDN----------------------------   61 (296)
T ss_pred             EEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHH----------------------------
T ss_conf             0698228881999707748764321111124557776589999978768978----------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC---CCCEEEEECCCCCCCCHHHHHHH--------
Q ss_conf             9999999887888655999988987202446776643000010221---78335300247863242677332--------
Q gi|254780623|r  190 AVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT---ERDVITMEWIDGVKISDTEKLRA--------  258 (517)
Q Consensus       190 ~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s---t~~VLvmE~i~G~~i~d~~~l~~--------  258 (517)
T Consensus        62 -----------~~~~f~~Ei~il~~l~H-----pnI--v~~~g-~~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~  122 (296)
T cd05051          62 -----------AREDFLKEVKILSRLSD-----PNI--ARLLG-VCTQDPPLCMIMEYMENGDLNQFLQKHVAETSGLAC  122 (296)
T ss_pred             -----------HHHHHHHHHHHHHHCCC-----CCC--CCEEE-EEEECCEEEEEEEECCCCCHHHHHHHCCCCCCCCCC
T ss_conf             -----------99999999999986899-----488--87989-998899889999906899789999863565432001


Q ss_pred             --HCCCH---HHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             --00225---68999999999998974486617878622898028953574340312169
Q gi|254780623|r  259 --CGHDL---ERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       259 --~~~d~---~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
T Consensus       123 ~~~~l~~~~~~~i~~qia~gl-~yLh~~~iiHrDlK~~NiLl~~~~~~Ki~DFGlsr~~~  181 (296)
T cd05051         123 NSKTLSFSTLLYMATQIASGM-KYLESLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLY  181 (296)
T ss_pred             CCCCCCHHHHHHHHHHHHHHH-HHHHHCCEECCCCCCCEEEECCCCCEEEEECCCCCCCC
T ss_conf             357789999999999999999-99977993447567265998899989998656773457