HHsearch alignment for GI: 254780623 and conserved domain: cd05053

>cd05053 PTKc_FGFR Catalytic Domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,
Probab=98.56  E-value=3e-07  Score=75.35  Aligned_cols=154  Identities=16%  Similarity=0.186  Sum_probs=90.1

Q ss_pred             CHHHHHHHHH--HHHHHHHHHHHHHHHEEC----CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf             8999999867--666778888655550212----8887236876403104688777788999875321146854334691
Q gi|254780623|r  115 PIEELYCEFD--DPIAAASIAQVHPAVVHD----INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCF  188 (517)
Q Consensus       115 ~~~~~F~~fd--ePlasASiaQVh~A~l~d----~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~  188 (517)
T Consensus         6 ~~~i~~~~~~l~~~LG~G~fG~Vyk~~~~~~~~~~~~~~~vAvK~l~~~~~~---~~~----------------------   60 (294)
T cd05053           6 EWELPRDRLTLGKPLGEGAFGQVVKAEAVGLPNRQNEETTVAVKMLKEDATE---KDL----------------------   60 (294)
T ss_pred             CCCCCHHHEEECCEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCH---HHH----------------------
T ss_conf             6741489928726893077829999998477775778679999998877797---999----------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHH--------
Q ss_conf             7999999988788865599998898720244677664300001022--178335300247863242677332--------
Q gi|254780623|r  189 SAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRA--------  258 (517)
Q Consensus       189 ~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~--------  258 (517)
T Consensus        61 --------------~~~~~E~~~l~~l~~----HpnI-v-~~~g~~~~~~~~~iv~Ey~~~GsL~~~l~~~~~~~~~~~~  120 (294)
T cd05053          61 --------------SDLVSEMEVMKMIGK----HKNI-I-NLLGCCTQGGPLYVVVEYAAHGNLRDFLRARRPPGEYASS  120 (294)
T ss_pred             --------------HHHHHHHHHHHHHCC----CCCE-E-EEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCCCC
T ss_conf             --------------999999999987348----9868-8-7878980599889999817999499999861875200122


Q ss_pred             -------HCCCHH---HHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             -------002256---89999999999989744866178786228980289535743403121698
Q gi|254780623|r  259 -------CGHDLE---RLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       259 -------~~~d~~---~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
T Consensus       121 ~~~~~~~~~l~~~~~~~~~~qia~g-l~yLH~~~IvHRDlKp~NILl~~~~~~Kl~DFGls~~~~~  185 (294)
T cd05053         121 DDPRPPEETLTQKDLVSFAYQVARG-MEYLASKKCIHRDLAARNVLVTEGYVMKIADFGLARDIHD  185 (294)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCC
T ss_conf             2233433577999999999999999-9999848996776770207888999499975787536788