HHsearch alignment for GI: 254780623 and conserved domain: cd05057
>cd05057 PTKc_EGFR_like Catalytic Domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea
Probab=98.66 E-value=1.3e-07 Score=78.21 Aligned_cols=148 Identities=16% Similarity=0.145 Sum_probs=91.3
Q ss_pred HHH--HHHHHHHHHHHHHHHEECCC--CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 867--66677888865555021288--87236876403104688777788999875321146854334691799999998
Q gi|254780623|r 122 EFD--DPIAAASIAQVHPAVVHDIN--GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ 197 (517)
Q Consensus 122 ~fd--ePlasASiaQVh~A~l~d~~--~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 197 (517)
T Consensus 8 d~e~~~~lG~G~fG~Vyk~~~~~~~~~~~~~vaiK~~~~~~~-----------------------------~~~~----- 53 (279)
T cd05057 8 ELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREATS-----------------------------PKAN----- 53 (279)
T ss_pred HCEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEEECCCCC-----------------------------HHHH-----
T ss_conf 998826973188819998999279986007999999887678-----------------------------7899-----
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHH---HHHHHHHH
Q ss_conf 878886559999889872024467766430000102217833530024786324267733200225689---99999999
Q gi|254780623|r 198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERL---SVTLVQSF 274 (517)
Q Consensus 198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~l---a~~l~~~~ 274 (517)
T Consensus 54 -----~~~~~E~~~l~~l~Hpn----Iv~l~g~~--~~~~~~lV~e~~~~GsL~~~l~~~~~~l~~~~~~~~~~qia~g- 121 (279)
T cd05057 54 -----KEILDEAYVMASVDHPH----VVRLLGIC--LTSQVQLITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKG- 121 (279)
T ss_pred -----HHHHHHHHHHHHCCCCC----EEEECEEE--ECCCEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-
T ss_conf -----99999999998479998----86001289--5497699999579995899997347899999999999999999-
Q ss_pred HHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf 99897448661787862289802895357434031216989
Q gi|254780623|r 275 LLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517)
Q Consensus 275 ~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517)
T Consensus 122 l~yLH~~~iiHRDlK~~NILl~~~~~~ki~DFGls~~~~~~ 162 (279)
T cd05057 122 MSYLEERRLVHRDLAARNVLVKTPNHVKITDFGLAKLLDAD 162 (279)
T ss_pred HHHHHHCCCCCCCCCHHHEEECCCCCEEEECCCCCEECCCC
T ss_conf 99997689634657631033689992899606643316899