HHsearch alignment for GI: 254780623 and conserved domain: cd05065
>cd05065 PTKc_EphR_B Catalytic Domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr
Probab=98.85 E-value=1.7e-08 Score=85.01 Aligned_cols=147 Identities=14% Similarity=0.165 Sum_probs=94.7
Q ss_pred HHHH--HHHHHHHHHHHHHHHEECC-CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9867--6667788886555502128-887236876403104688777788999875321146854334691799999998
Q gi|254780623|r 121 CEFD--DPIAAASIAQVHPAVVHDI-NGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ 197 (517)
Q Consensus 121 ~~fd--ePlasASiaQVh~A~l~d~-~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 197 (517)
T Consensus 4 ~~~~l~~~iG~G~fG~Vy~g~~~~~g~~~~~VAvK~l~~~~~~~------------------------------------ 47 (269)
T cd05065 4 SCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEK------------------------------------ 47 (269)
T ss_pred HHCEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCHH------------------------------------
T ss_conf 99298889921778399999993799650799999988457979------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC---CCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHH
Q ss_conf 87888655999988987202446776643000010221---783353002478632426773320022568---999999
Q gi|254780623|r 198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT---ERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLV 271 (517)
Q Consensus 198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s---t~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~ 271 (517)
T Consensus 48 ---~~~~f~~E~~il~~l~H-----pNI--v~~~g-~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~~ia 116 (269)
T cd05065 48 ---QRRDFLSEASIMGQFDH-----PNI--IHLEG-VVTKSRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLRGIA 116 (269)
T ss_pred ---HHHHHHHHHHHHHHCCC-----CCC--CEEEE-EEEECCEEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf ---99999999999986899-----788--71999-99889988999991899918999973679999999999999999
Q ss_pred HHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf 99999897448661787862289802895357434031216989
Q gi|254780623|r 272 QSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517)
Q Consensus 272 ~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517)
T Consensus 117 ~-gl~yLH~~~iiHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~ 159 (269)
T cd05065 117 A-GMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDD 159 (269)
T ss_pred H-HHHHHHHCCEECCCCCCCCEEECCCCCEEEEECCCCEECCCC
T ss_conf 9-999986698741667703066779996998335356776678