HHsearch alignment for GI: 254780623 and conserved domain: cd05073

>cd05073 PTKc_Hck Catalytic Domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase. Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa
Probab=98.76  E-value=1.3e-08  Score=85.81  Aligned_cols=142  Identities=19%  Similarity=0.257  Sum_probs=93.0

Q ss_pred             HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99867--6667788886555502128887236876403104688777788999875321146854334691799999998
Q gi|254780623|r  120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ  197 (517)
Q Consensus       120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~  197 (517)
T Consensus         5 ~~~~~l~~~iG~G~fG~Vy~~~~~~---~~~VAvK~l~~~~~---------------------------~----~-----   45 (260)
T cd05073           5 RESLKLEKKLGAGQFGEVWMATYNK---HTKVAVKTMKPGSM---------------------------S----V-----   45 (260)
T ss_pred             HHHEEEEEEEECCCCCEEEEEEECC---CCEEEEEEECCCCC---------------------------C----H-----
T ss_conf             7997972399417886999999899---99999999856767---------------------------8----9-----


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHH-HCCCHH---HHHHHHH
Q ss_conf             878886559999889872024467766430000102217--8335300247863242677332-002256---8999999
Q gi|254780623|r  198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRA-CGHDLE---RLSVTLV  271 (517)
Q Consensus       198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~-~~~d~~---~la~~l~  271 (517)
T Consensus        46 -----~~f~~E~~~l~~l~H-----pniv--~~~~-~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~~qia  112 (260)
T cd05073          46 -----EAFLAEANVMKTLQH-----DKLV--KLHA-VVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIA  112 (260)
T ss_pred             -----HHHHHHHHHHHHCCC-----CCEE--EEEE-EEECCCEEEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             -----999999999986899-----8886--4999-99469539999916998999998636677789999999999999


Q ss_pred             HHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             9999989744866178786228980289535743403121698
Q gi|254780623|r  272 QSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       272 ~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
T Consensus       113 ~g-l~yLH~~~iiHrDlKp~NiLl~~~~~~Kl~DFGls~~~~~  154 (260)
T cd05073         113 EG-MAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIED  154 (260)
T ss_pred             HH-HHHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCEECCC
T ss_conf             99-9999869926676772007886998789985688658579