HHsearch alignment for GI: 254780623 and conserved domain: cd05075

>cd05075 PTKc_Axl Catalytic Domain of the Protein Tyrosine Kinase, Axl. Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor
Probab=98.94  E-value=3e-09  Score=90.79  Aligned_cols=153  Identities=14%  Similarity=0.227  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             67666778888655550212888723687640310468877778899987532114685433469179999999887888
Q gi|254780623|r  123 FDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME  202 (517)
Q Consensus       123 fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E  202 (517)
T Consensus         3 lg~~iG~G~fG~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~-------------------------------~-------~   44 (272)
T cd05075           3 LGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRS-------------------------------E-------M   44 (272)
T ss_pred             CCCEEEECCCCEEEEEEECCCCEEEEEEEEEECCCCCCHH-------------------------------H-------H
T ss_conf             3898840778199999995999899999999520328989-------------------------------9-------9


Q ss_pred             HHHHHHHHHHHHHHCC-CCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHC-----CCHH---HHHHHHHHH
Q ss_conf             6559999889872024-467766430000102217833530024786324267733200-----2256---899999999
Q gi|254780623|r  203 MDLRLEAAAFSEMAEN-TVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACG-----HDLE---RLSVTLVQS  273 (517)
Q Consensus       203 lD~~~Ea~n~~~~~~~-~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~-----~d~~---~la~~l~~~  273 (517)
T Consensus        45 ~~f~~E~~~l~~l~HpnIv~l~G~~~~~~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~~~~~ia~g  124 (272)
T cd05075          45 EDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASG  124 (272)
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             99999999999779998824888996445555677668999927999799998541146776779999999999999999


Q ss_pred             HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             99989744866178786228980289535743403121698
Q gi|254780623|r  274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
T Consensus       125 -L~yLH~~~ivHrDLK~~NiLl~~~~~~Kl~DFGls~~~~~  164 (272)
T cd05075         125 -MEYLSSKSFIHRDLAARNCMLNENMNVCVADFGLSKKIYN  164 (272)
T ss_pred             -HHHHHHCCEECCCCCCCEEEECCCCCEEEECCCCCEECCC
T ss_conf             -9987109836476761238988999899810511215468