HHsearch alignment for GI: 254780623 and conserved domain: cd05079
>cd05079 PTKc_Jak1_rpt2 Catalytic (Repeat 2) Domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a
Probab=98.86 E-value=2.2e-08 Score=84.20 Aligned_cols=147 Identities=16% Similarity=0.204 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHEE--CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 66677888865555021--2888723687640310468877778899987532114685433469179999999887888
Q gi|254780623|r 125 DPIAAASIAQVHPAVVH--DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME 202 (517)
Q Consensus 125 ePlasASiaQVh~A~l~--d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E 202 (517)
T Consensus 10 ~~iG~G~fG~V~~~~~~~~~~~~~~~vAvK~l~~~~~~~-----------------------------~~~--------- 51 (284)
T cd05079 10 RDLGEGHFGKVELCRYDPEGDNTGELVAVKSLKPENGGE-----------------------------HIA--------- 51 (284)
T ss_pred EEECCCCCEEEEEEEEECCCCCCCCEEEEEEECCCCCHH-----------------------------HHH---------
T ss_conf 596137083999858864427779399999984212867-----------------------------899---------
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC-EEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHHHHHHHH
Q ss_conf 655999988987202446776643000010221783-353002478632426773320022568---9999999999989
Q gi|254780623|r 203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD-VITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQSFLLHT 278 (517)
Q Consensus 203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~-VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~~~~~qi 278 (517)
T Consensus 52 -~~~~E~~il~~l~H----pNIv~~~g~~~~~~~~~~~lVmEy~~~GsL~~~l~~~~~~l~~~~~~~~~~qia~g-l~yL 125 (284)
T cd05079 52 -DLKKEIEILRNLYH----ENIVKYKGICTEEGGNGIKLIMEFLPSGSLKEYLPRNKNKINLKQLLKYAVQICKG-MDYL 125 (284)
T ss_pred -HHHHHHHHHHHCCC----CCCCEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHH
T ss_conf -99999999986799----88840865783379977999999389994899986346899999999999999999-9987
Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf 7448661787862289802895357434031216989
Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517)
Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517)
T Consensus 126 H~~~ivHrDlK~~NiLl~~~~~~Kl~DFGla~~~~~~ 162 (284)
T cd05079 126 GSRQYVHRDLAARNVLVENERMVKIGDFGLTKAIKTD 162 (284)
T ss_pred HHCCEECCCCCCCEEEECCCCCEEEEECCCCEECCCC
T ss_conf 0398364777622389879997899736665465789