HHsearch alignment for GI: 254780623 and conserved domain: cd05079

>cd05079 PTKc_Jak1_rpt2 Catalytic (Repeat 2) Domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a
Probab=98.86  E-value=2.2e-08  Score=84.20  Aligned_cols=147  Identities=16%  Similarity=0.204  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHHEE--CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021--2888723687640310468877778899987532114685433469179999999887888
Q gi|254780623|r  125 DPIAAASIAQVHPAVVH--DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME  202 (517)
Q Consensus       125 ePlasASiaQVh~A~l~--d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E  202 (517)
T Consensus        10 ~~iG~G~fG~V~~~~~~~~~~~~~~~vAvK~l~~~~~~~-----------------------------~~~---------   51 (284)
T cd05079          10 RDLGEGHFGKVELCRYDPEGDNTGELVAVKSLKPENGGE-----------------------------HIA---------   51 (284)
T ss_pred             EEECCCCCEEEEEEEEECCCCCCCCEEEEEEECCCCCHH-----------------------------HHH---------
T ss_conf             596137083999858864427779399999984212867-----------------------------899---------


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC-EEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHHHHHHHH
Q ss_conf             655999988987202446776643000010221783-353002478632426773320022568---9999999999989
Q gi|254780623|r  203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD-VITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQSFLLHT  278 (517)
Q Consensus       203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~-VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~~~~~qi  278 (517)
T Consensus        52 -~~~~E~~il~~l~H----pNIv~~~g~~~~~~~~~~~lVmEy~~~GsL~~~l~~~~~~l~~~~~~~~~~qia~g-l~yL  125 (284)
T cd05079          52 -DLKKEIEILRNLYH----ENIVKYKGICTEEGGNGIKLIMEFLPSGSLKEYLPRNKNKINLKQLLKYAVQICKG-MDYL  125 (284)
T ss_pred             -HHHHHHHHHHHCCC----CCCCEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHH
T ss_conf             -99999999986799----88840865783379977999999389994899986346899999999999999999-9987


Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             7448661787862289802895357434031216989
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
T Consensus       126 H~~~ivHrDlK~~NiLl~~~~~~Kl~DFGla~~~~~~  162 (284)
T cd05079         126 GSRQYVHRDLAARNVLVENERMVKIGDFGLTKAIKTD  162 (284)
T ss_pred             HHCCEECCCCCCCEEEECCCCCEEEEECCCCEECCCC
T ss_conf             0398364777622389879997899736665465789