HHsearch alignment for GI: 254780623 and conserved domain: cd05092
>cd05092 PTKc_TrkA Catalytic Domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A. Protein Tyrosine Kinase (PTK) family; Tropomyosin related kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory
Probab=98.73 E-value=6.9e-08 Score=80.31 Aligned_cols=144 Identities=15% Similarity=0.150 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHEEC---CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 7666778888655550212---8887236876403104688777788999875321146854334691799999998878
Q gi|254780623|r 124 DDPIAAASIAQVHPAVVHD---INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTK 200 (517)
Q Consensus 124 dePlasASiaQVh~A~l~d---~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~ 200 (517)
T Consensus 10 ~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~---------------------------------------- 49 (280)
T cd05092 10 KWELGEGAFGKVFLAECANLLPEQDKMLVAVKALKEANES---------------------------------------- 49 (280)
T ss_pred EEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHH----------------------------------------
T ss_conf 6795457686899999867755876779999997856868----------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHH--------H------HCCC--
Q ss_conf 8865599998898720244677664300001022178--33530024786324267733--------2------0022--
Q gi|254780623|r 201 MEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLR--------A------CGHD-- 262 (517)
Q Consensus 201 ~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~--------~------~~~d-- 262 (517)
T Consensus 50 ~~~~~~~E~~~l~~l~H-----pn--Iv~~~g~~~~~~~~~lvmEy~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 122 (280)
T cd05092 50 ARQDFQREAELLTVLQH-----QH--IVRFYGVCTEGEPLAMVFEYMRHGDLNRFLRSHGPDAKILDEGKDVAPGQLTLP 122 (280)
T ss_pred HHHHHHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEEECCCCCHHHHHHHHCCCCCCCHHCCCCCCCCCCHH
T ss_conf 99999999999986789-----98--670888992399899999806999089999870874100000024666777999
Q ss_pred -HHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf -56899999999999897448661787862289802895357434031216989
Q gi|254780623|r 263 -LERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517)
Q Consensus 263 -~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517)
T Consensus 123 ~~~~i~~qia~gl~-yLHs~~iiHRDlKp~NiLl~~~~~~Kl~DFGls~~~~~~ 175 (280)
T cd05092 123 QMLHIAAQIASGMV-YLASLHFVHRDLATRNCLVGEGLVVKIGDFGMSRDIYST 175 (280)
T ss_pred HHHHHHHHHHHHHH-HHHHCCCCCCCCCCCEEEECCCCCEEECCCEECCCCCCC
T ss_conf 99999999999999-984099736866714289879994897526303315777