HHsearch alignment for GI: 254780623 and conserved domain: cd05092

>cd05092 PTKc_TrkA Catalytic Domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A. Protein Tyrosine Kinase (PTK) family; Tropomyosin related kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory
Probab=98.73  E-value=6.9e-08  Score=80.31  Aligned_cols=144  Identities=15%  Similarity=0.150  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHHHHEEC---CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             7666778888655550212---8887236876403104688777788999875321146854334691799999998878
Q gi|254780623|r  124 DDPIAAASIAQVHPAVVHD---INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTK  200 (517)
Q Consensus       124 dePlasASiaQVh~A~l~d---~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~  200 (517)
T Consensus        10 ~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~----------------------------------------   49 (280)
T cd05092          10 KWELGEGAFGKVFLAECANLLPEQDKMLVAVKALKEANES----------------------------------------   49 (280)
T ss_pred             EEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHH----------------------------------------
T ss_conf             6795457686899999867755876779999997856868----------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHH--------H------HCCC--
Q ss_conf             8865599998898720244677664300001022178--33530024786324267733--------2------0022--
Q gi|254780623|r  201 MEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLR--------A------CGHD--  262 (517)
Q Consensus       201 ~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~--------~------~~~d--  262 (517)
T Consensus        50 ~~~~~~~E~~~l~~l~H-----pn--Iv~~~g~~~~~~~~~lvmEy~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~  122 (280)
T cd05092          50 ARQDFQREAELLTVLQH-----QH--IVRFYGVCTEGEPLAMVFEYMRHGDLNRFLRSHGPDAKILDEGKDVAPGQLTLP  122 (280)
T ss_pred             HHHHHHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEEECCCCCHHHHHHHHCCCCCCCHHCCCCCCCCCCHH
T ss_conf             99999999999986789-----98--670888992399899999806999089999870874100000024666777999


Q ss_pred             -HHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             -56899999999999897448661787862289802895357434031216989
Q gi|254780623|r  263 -LERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       263 -~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
T Consensus       123 ~~~~i~~qia~gl~-yLHs~~iiHRDlKp~NiLl~~~~~~Kl~DFGls~~~~~~  175 (280)
T cd05092         123 QMLHIAAQIASGMV-YLASLHFVHRDLATRNCLVGEGLVVKIGDFGMSRDIYST  175 (280)
T ss_pred             HHHHHHHHHHHHHH-HHHHCCCCCCCCCCCEEEECCCCCEEECCCEECCCCCCC
T ss_conf             99999999999999-984099736866714289879994897526303315777