HHsearch alignment for GI: 254780623 and conserved domain: cd05094
>cd05094 PTKc_TrkC Catalytic Domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C. Protein Tyrosine Kinase (PTK) family; Tropomyosin related kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n
Probab=98.51 E-value=3.2e-07 Score=75.08 Aligned_cols=143 Identities=13% Similarity=0.217 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHEECC---CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 76667788886555502128---887236876403104688777788999875321146854334691799999998878
Q gi|254780623|r 124 DDPIAAASIAQVHPAVVHDI---NGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTK 200 (517)
Q Consensus 124 dePlasASiaQVh~A~l~d~---~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~ 200 (517)
T Consensus 10 ~~~iG~G~FG~Vy~a~~~~~~~~~~~~~vAvK~l~~------------------------~-----~-----------~~ 49 (291)
T cd05094 10 KRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKD------------------------P-----T-----------LA 49 (291)
T ss_pred EEEEECCCCCEEEEEEECCCCCCCCCEEEEEEEECC------------------------C-----C-----------HH
T ss_conf 049813768699999981676377777999999787------------------------4-----5-----------57
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCC-CCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHH---------------HCCC--
Q ss_conf 886559999889872024467766-4300001022178335300247863242677332---------------0022--
Q gi|254780623|r 201 MEMDLRLEAAAFSEMAENTVKDQG-FRVPKIDWNRTERDVITMEWIDGVKISDTEKLRA---------------CGHD-- 262 (517)
Q Consensus 201 ~ElD~~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~---------------~~~d-- 262 (517)
T Consensus 50 ~~~~~~~E~~il~~l~H-----pnIV~l~g~~~~-~~~~~lv~Ey~~~G~L~~~l~~~~~~~~~~~~~~p~~~~~~l~~~ 123 (291)
T cd05094 50 ARKDFQREAELLTNLQH-----EHIVKFYGVCGD-GDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLS 123 (291)
T ss_pred HHHHHHHHHHHHHHCCC-----CCCCCEEEEEEE-CCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCHHCCCCCCHH
T ss_conf 89999999999985899-----887738889823-998899999169992999998619741001234420104778999
Q ss_pred -HHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf -568999999999998974486617878622898028953574340312169
Q gi|254780623|r 263 -LERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517)
Q Consensus 263 -~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517)
T Consensus 124 ~~~~i~~qia~gl-~yLH~~~iiHRDLKp~NILl~~~~~~Ki~DFGlsr~~~ 174 (291)
T cd05094 124 QMLHIASQIASGM-VYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVY 174 (291)
T ss_pred HHHHHHHHHHHHH-HHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCC
T ss_conf 9999999999999-99975892656776405998799978994465654067