HHsearch alignment for GI: 254780623 and conserved domain: cd05097
>cd05097 PTKc_DDR_like Catalytic Domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Discoidin domain receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including
Probab=98.82 E-value=8.7e-08 Score=79.53 Aligned_cols=143 Identities=18% Similarity=0.267 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHHEECC----------CCCC--EEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 8676667788886555502128----------8872--368764031046887777889998753211468543346917
Q gi|254780623|r 122 EFDDPIAAASIAQVHPAVVHDI----------NGYR--KVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFS 189 (517)
Q Consensus 122 ~fdePlasASiaQVh~A~l~d~----------~~g~--~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~ 189 (517)
T Consensus 8 ~l~~~iG~G~FG~Vy~~~~~g~~~~~~~~~~~~~~~~~~VAvK~l~~~~~~~---------------------------- 59 (295)
T cd05097 8 RLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKT---------------------------- 59 (295)
T ss_pred EEEEEECCCCCCEEEEEEECCCCHHCCCCCCCCCCCEEEEEEEEECCCCCHH----------------------------
T ss_conf 8833981374859896488474210133553458945799999978658978----------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCH--HCCCCEEEEECCCCCCCCHHHHHHHH--------
Q ss_conf 99999998878886559999889872024467766430000102--21783353002478632426773320--------
Q gi|254780623|r 190 AVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWN--RTERDVITMEWIDGVKISDTEKLRAC-------- 259 (517)
Q Consensus 190 ~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~--~st~~VLvmE~i~G~~i~d~~~l~~~-------- 259 (517)
T Consensus 60 -----------~~~~f~~E~~il~~l~H-----pNI--V~l~G~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~~ 121 (295)
T cd05097 60 -----------ARNDFLKEIKIMSRLKN-----PNI--IRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHAN 121 (295)
T ss_pred -----------HHHHHHHHHHHHHHCCC-----CCC--CCEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf -----------99999999999986799-----799--889899998996799997377993999986223332112235
Q ss_pred ---CCCHH---HHHHHHHH--HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf ---02256---89999999--99998974486617878622898028953574340312169
Q gi|254780623|r 260 ---GHDLE---RLSVTLVQ--SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517)
Q Consensus 260 ---~~d~~---~la~~l~~--~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517)
T Consensus 122 ~~~~l~~~~~l~ia~qia~gl~yL---h~~~iiHrDLK~~NiLl~~~~~~Ki~DFGlar~~~ 180 (295)
T cd05097 122 NIPSVSIANLLYMAVQIASGMKYL---ASLNFVHRDLATRNCLVGNHYTIKIADFGMSRNLY 180 (295)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH---HHCCEECCCCCCCEEEECCCCCEEEEECCCCCCCC
T ss_conf 778668999999999999999998---54985526667040888899978996442552567