HHsearch alignment for GI: 254780623 and conserved domain: cd05098
>cd05098 PTKc_FGFR1 Catalytic Domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=98.68 E-value=2.3e-07 Score=76.20 Aligned_cols=161 Identities=14% Similarity=0.164 Sum_probs=96.8
Q ss_pred HHHHC--CCCHHHHHHHHH--HHHHHHHHHHHHHHHEECCC-----CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 75404--788999999867--66677888865555021288-----8723687640310468877778899987532114
Q gi|254780623|r 108 VASAL--KAPIEELYCEFD--DPIAAASIAQVHPAVVHDIN-----GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEK 178 (517)
Q Consensus 108 ie~el--g~~~~~~F~~fd--ePlasASiaQVh~A~l~d~~-----~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~ 178 (517)
T Consensus 3 ~~~~~p~~~~weI~~~~l~l~~~iG~G~FG~Vy~a~~~~~~~~~~~~~~~VAvK~l~~~~~~---~-------------- 65 (307)
T cd05098 3 SEYELPEDPRWEVPRDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATE---K-------------- 65 (307)
T ss_pred CCCCCCCCCCCCCCHHHEEECCEEECCCCEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCH---H--------------
T ss_conf 65679999877234899698469812667199999992677667870379999997876898---9--------------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHH
Q ss_conf 68543346917999999988788865599998898720244677664300001022--1783353002478632426773
Q gi|254780623|r 179 LLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKL 256 (517)
Q Consensus 179 ~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l 256 (517)
T Consensus 66 ----------------------~~~~~~~E~~~l~~l~~----H~nI--v~l~g~~~~~~~~~lV~Ey~~~GsL~~~L~~ 117 (307)
T cd05098 66 ----------------------DLSDLISEMEMMKMIGK----HKNI--INLLGACTQDGPLYVIVEYASKGNLREYLRA 117 (307)
T ss_pred ----------------------HHHHHHHHHHHHHHHCC----CCCE--EEEEEEEEECCEEEEEEEECCCCCHHHHHHH
T ss_conf ----------------------99999999999985149----9987--0799999889988999980699999999986
Q ss_pred HH---------------HCCCHH---HHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf 32---------------002256---89999999999989744866178786228980289535743403121698
Q gi|254780623|r 257 RA---------------CGHDLE---RLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517)
Q Consensus 257 ~~---------------~~~d~~---~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517)
T Consensus 118 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~g-l~yLH~~~iiHRDLK~~NILl~~~~~~Ki~DFGla~~~~~ 192 (307)
T cd05098 118 RRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARG-MEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHH 192 (307)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCC
T ss_conf 27764211246554721237999999999999999-9999848996786670202076899789715022322566