HHsearch alignment for GI: 254780623 and conserved domain: cd05098

>cd05098 PTKc_FGFR1 Catalytic Domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=98.68  E-value=2.3e-07  Score=76.20  Aligned_cols=161  Identities=14%  Similarity=0.164  Sum_probs=96.8

Q ss_pred             HHHHC--CCCHHHHHHHHH--HHHHHHHHHHHHHHHEECCC-----CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             75404--788999999867--66677888865555021288-----8723687640310468877778899987532114
Q gi|254780623|r  108 VASAL--KAPIEELYCEFD--DPIAAASIAQVHPAVVHDIN-----GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEK  178 (517)
Q Consensus       108 ie~el--g~~~~~~F~~fd--ePlasASiaQVh~A~l~d~~-----~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~  178 (517)
T Consensus         3 ~~~~~p~~~~weI~~~~l~l~~~iG~G~FG~Vy~a~~~~~~~~~~~~~~~VAvK~l~~~~~~---~--------------   65 (307)
T cd05098           3 SEYELPEDPRWEVPRDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATE---K--------------   65 (307)
T ss_pred             CCCCCCCCCCCCCCHHHEEECCEEECCCCEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCH---H--------------
T ss_conf             65679999877234899698469812667199999992677667870379999997876898---9--------------


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHH
Q ss_conf             68543346917999999988788865599998898720244677664300001022--1783353002478632426773
Q gi|254780623|r  179 LLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKL  256 (517)
Q Consensus       179 ~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l  256 (517)
T Consensus        66 ----------------------~~~~~~~E~~~l~~l~~----H~nI--v~l~g~~~~~~~~~lV~Ey~~~GsL~~~L~~  117 (307)
T cd05098          66 ----------------------DLSDLISEMEMMKMIGK----HKNI--INLLGACTQDGPLYVIVEYASKGNLREYLRA  117 (307)
T ss_pred             ----------------------HHHHHHHHHHHHHHHCC----CCCE--EEEEEEEEECCEEEEEEEECCCCCHHHHHHH
T ss_conf             ----------------------99999999999985149----9987--0799999889988999980699999999986


Q ss_pred             HH---------------HCCCHH---HHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             32---------------002256---89999999999989744866178786228980289535743403121698
Q gi|254780623|r  257 RA---------------CGHDLE---RLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       257 ~~---------------~~~d~~---~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
T Consensus       118 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~g-l~yLH~~~iiHRDLK~~NILl~~~~~~Ki~DFGla~~~~~  192 (307)
T cd05098         118 RRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARG-MEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHH  192 (307)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCC
T ss_conf             27764211246554721237999999999999999-9999848996786670202076899789715022322566