HHsearch alignment for GI: 254780623 and conserved domain: cd05113

>cd05113 PTKc_Btk_Bmx Catalytic Domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome. Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds
Probab=98.89  E-value=1.3e-08  Score=85.82  Aligned_cols=142  Identities=15%  Similarity=0.183  Sum_probs=91.7

Q ss_pred             HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             9867--66677888865555021288872368764031046887777889998753211468543346917999999988
Q gi|254780623|r  121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV  198 (517)
Q Consensus       121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  198 (517)
T Consensus         4 ~d~~~~~~iG~G~fg~Vy~~~~~~---~~~vAvK~~~~~~~---------------------------~-----------   42 (256)
T cd05113           4 RDLTFLKELGTGQFGVVKYGKWQG---QYDVAIKMIKEGSM---------------------------S-----------   42 (256)
T ss_pred             HHCEEEEEEECCCCEEEEEEEECC---CCEEEEEEECCCCC---------------------------C-----------
T ss_conf             994980697028781999999879---97999999835889---------------------------9-----------


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHHHCCCH---HHHHHHHHHH
Q ss_conf             788865599998898720244677664300001022--17833530024786324267733200225---6899999999
Q gi|254780623|r  199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRACGHDL---ERLSVTLVQS  273 (517)
Q Consensus       199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~~~~d~---~~la~~l~~~  273 (517)
T Consensus        43 ---~~~~~~E~~~l~~l~H-----pnI--V~l~g~~~~~~~~~lv~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~ia~g  112 (256)
T cd05113          43 ---EDEFIEEAKVMMKLSH-----EKL--VQLYGVCTKQRPIYIVTEYLANGCLLNYLREGLKRPTPSQLLEMCKDVCEG  112 (256)
T ss_pred             ---HHHHHHHHHHHHHCCC-----CCC--CCEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             ---8999999999986799-----897--609999988998999998079998899998548999999999999999999


Q ss_pred             HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             99989744866178786228980289535743403121698
Q gi|254780623|r  274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
T Consensus       113 -l~yLH~~~iiHrDlK~~NiLid~~~~~Kl~DFGls~~~~~  152 (256)
T cd05113         113 -MAYLESKQFIHRDLAARNCLVDSNGTVKVSDFGLSRYVLD  152 (256)
T ss_pred             -HHHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCEECCC
T ss_conf             -9987058943165772769888999799961688517788