HHsearch alignment for GI: 254780623 and conserved domain: cd05150
>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH). The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio
Probab=98.13 E-value=0.00013 Score=54.79 Aligned_cols=77 Identities=16% Similarity=0.196 Sum_probs=50.2
Q ss_pred CEECCCCCCCEEEEECCCCE-EEEECCHHEECCHHHHHHHHHHHHHHHCCC-HHHHHHHHHH-HHCCCCCCCHHHHHHHH
Q ss_conf 86617878622898028953-574340312169899999997669997187-2789999998-41266778936899999
Q gi|254780623|r 282 GFFHADLHPGNLFVDSKGYI-VAVDMGITGRLSKRERRFLAEILYGFISRD-YQRVADVHFE-AGYVPRHHNRFSFAQAI 358 (517)
Q Consensus 282 GfFHaDPHpGNi~v~~dg~i-~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D-~~~~~~~l~~-lg~~~~~~d~~~~~~~i 358 (517)
T Consensus 164 v~~HGD~~~~N~l~~~-~~~~g~iD~~~~g~aDr~~DLa~--~~~sl~~n~~~~~~~~~Fl~~YG~~~~D~~rl~~y~lL 240 (244)
T cd05150 164 VVTHGDACLPNIIVDP-GKFSGFIDLGRLGVADRYQDLAL--AVRSLRENLGGEEYAARFLDRYGIDAPDPEKLAYYRLL 240 (244)
T ss_pred EEECCCCCCCCEEEEC-CEEEEEEECCCCCCCCHHHHHHH--HHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 7877888888889858-91899997666677777999999--99677530698389999999809998998999999988
Q ss_pred HHH
Q ss_conf 985
Q gi|254780623|r 359 RAI 361 (517)
Q Consensus 359 ~~~ 361 (517)
T Consensus 241 DEf 243 (244)
T cd05150 241 DEF 243 (244)
T ss_pred HHH
T ss_conf 743