HHsearch alignment for GI: 254780623 and conserved domain: cd05580
>cd05580 STKc_PKA STKc_PKA: Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It pl
Probab=98.96 E-value=4.3e-09 Score=89.67 Aligned_cols=139 Identities=20% Similarity=0.276 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517)
Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517)
T Consensus 7 ~~lG~G~fg~V~~a~~~~--t~~~vAiK~i~k~~-------~---------~----------~~-~----------~~~~ 47 (290)
T cd05580 7 KTLGTGSFGRVMLVKHKG--TGKYYAMKILSKAK-------I---------V----------KL-K----------QVEH 47 (290)
T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECHHH-------C---------C----------CH-H----------HHHH
T ss_conf 998327683999999989--99899999985688-------3---------3----------77-8----------9999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH----
Q ss_conf 5999988987202446776643000010221783--3530024786324267733200225689999999999989----
Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT---- 278 (517)
Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi---- 278 (517)
T Consensus 48 ~~~E~~il~~l~h-----pn--Iv~l~~~~~~~~~~yivmEy~~gg~L~~~--l~~~~----~l~e~~~~~~~~Qi~~aL 114 (290)
T cd05580 48 VLNEKRILQAVRH-----PF--LVNLLGSFKDNSNLYMVMEFVPGGELFSL--LRRSG----RFPEPVARFYAAQVVLAL 114 (290)
T ss_pred HHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCC----CCCHHHHHHHHHHHHHHH
T ss_conf 9999999986799-----89--99099999989999999958999898999--98749----999999999999999999
Q ss_pred ---HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf ---7448661787862289802895357434031216989
Q gi|254780623|r 279 ---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517)
Q Consensus 279 ---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517)
T Consensus 115 ~ylH~~~IiHRDiKpeNILl~~~g~iKL~DFG~a~~~~~~ 154 (290)
T cd05580 115 EYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGR 154 (290)
T ss_pred HHHHHCCEEEEECCCCCCCCCCCCCEEEEECCCCEECCCC
T ss_conf 9999889242023643333068998898005533664788