HHsearch alignment for GI: 254780623 and conserved domain: cd05613
>cd05613 STKc_MSK1_N STKc_MSK1_N: Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the
Probab=98.66 E-value=3.3e-08 Score=82.81 Aligned_cols=141 Identities=15% Similarity=0.240 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHE-ECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 6667788886555502-128887236876403104688777788999875321146854334691799999998878886
Q gi|254780623|r 125 DPIAAASIAQVHPAVV-HDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM 203 (517)
Q Consensus 125 ePlasASiaQVh~A~l-~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El 203 (517)
T Consensus 6 ~~iG~G~fg~V~~~~~~~~~~t~~~~AiK~i~k~~~----------------~~~----------~~----~~~~~~--- 52 (290)
T cd05613 6 KVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATI----------------VQK----------AK----TTEHTR--- 52 (290)
T ss_pred EEEECCCCEEEEEEEECCCCCCCCEEEEEEEEHHHH----------------HHH----------HH----HHHHHH---
T ss_conf 795138883999999853278894999999807884----------------010----------67----899999---
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH----
Q ss_conf 5599998898720244677664300001022178--3353002478632426773320022568999999999998----
Q gi|254780623|r 204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH---- 277 (517)
Q Consensus 204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q---- 277 (517)
T Consensus 53 ---~E~~il~~l~----~~p~I--v~l~~~~~~~~~~ylvmEy~~gg~L~~~--l~~~~----~l~e~~~~~~~~qil~a 117 (290)
T cd05613 53 ---TERQVLEHIR----QSPFL--VTLHYAFQTDTKLHLILDYINGGELFTH--LSQRE----RFKEQEVQIYSGEIVLA 117 (290)
T ss_pred ---HHHHHHHHCC----CCCCE--EEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCC----CCCHHHHHHHHHHHHHH
T ss_conf ---9999998548----99967--8999999989999999967799888999--98749----99999999999999999
Q ss_pred ---HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf ---974486617878622898028953574340312169
Q gi|254780623|r 278 ---TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517)
Q Consensus 278 ---i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517)
T Consensus 118 l~ylH~~~IiHRDiKpeNILl~~~g~ikl~DFGls~~~~ 156 (290)
T cd05613 118 LEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFH 156 (290)
T ss_pred HHHHHHCCCEECCCCHHHCCCCCCCCEEECCCCCCEEEC
T ss_conf 999998894532366365446689988983276011212