HHsearch alignment for GI: 254780623 and conserved domain: cd05613

>cd05613 STKc_MSK1_N STKc_MSK1_N: Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the
Probab=98.66  E-value=3.3e-08  Score=82.81  Aligned_cols=141  Identities=15%  Similarity=0.240  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHHHE-ECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             6667788886555502-128887236876403104688777788999875321146854334691799999998878886
Q gi|254780623|r  125 DPIAAASIAQVHPAVV-HDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM  203 (517)
Q Consensus       125 ePlasASiaQVh~A~l-~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El  203 (517)
T Consensus         6 ~~iG~G~fg~V~~~~~~~~~~t~~~~AiK~i~k~~~----------------~~~----------~~----~~~~~~---   52 (290)
T cd05613           6 KVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATI----------------VQK----------AK----TTEHTR---   52 (290)
T ss_pred             EEEECCCCEEEEEEEECCCCCCCCEEEEEEEEHHHH----------------HHH----------HH----HHHHHH---
T ss_conf             795138883999999853278894999999807884----------------010----------67----899999---


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH----
Q ss_conf             5599998898720244677664300001022178--3353002478632426773320022568999999999998----
Q gi|254780623|r  204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH----  277 (517)
Q Consensus       204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q----  277 (517)
T Consensus        53 ---~E~~il~~l~----~~p~I--v~l~~~~~~~~~~ylvmEy~~gg~L~~~--l~~~~----~l~e~~~~~~~~qil~a  117 (290)
T cd05613          53 ---TERQVLEHIR----QSPFL--VTLHYAFQTDTKLHLILDYINGGELFTH--LSQRE----RFKEQEVQIYSGEIVLA  117 (290)
T ss_pred             ---HHHHHHHHCC----CCCCE--EEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCC----CCCHHHHHHHHHHHHHH
T ss_conf             ---9999998548----99967--8999999989999999967799888999--98749----99999999999999999


Q ss_pred             ---HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             ---974486617878622898028953574340312169
Q gi|254780623|r  278 ---TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       278 ---i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
T Consensus       118 l~ylH~~~IiHRDiKpeNILl~~~g~ikl~DFGls~~~~  156 (290)
T cd05613         118 LEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFH  156 (290)
T ss_pred             HHHHHHCCCEECCCCHHHCCCCCCCCEEECCCCCCEEEC
T ss_conf             999998894532366365446689988983276011212