HHsearch alignment for GI: 254780623 and conserved domain: cd05618
>cd05618 STKc_aPKC_iota STKc_aPKC_iota: Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been i
Probab=98.50 E-value=1.8e-07 Score=77.08 Aligned_cols=137 Identities=18% Similarity=0.177 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 67788886555502128887236876403104688777788999875321146854334691799999998878886559
Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR 206 (517)
Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~ 206 (517)
T Consensus 3 LG~G~fG~V~~~~~~~--t~~~~AiK~i~k~~~---~~~----------------------------~~~~~~~~E---- 45 (329)
T cd05618 3 IGRGSYAKVLLVRLKK--TERIYAMKVVKKELV---NDD----------------------------EDIDWVQTE---- 45 (329)
T ss_pred EEECCCEEEEEEEECC--CCCEEEEEEECHHHC---CCH----------------------------HHHHHHHHH----
T ss_conf 4038793999999989--998999999867887---798----------------------------999999999----
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHC-CC---HHHHHHHHHHHHHHHHHH
Q ss_conf 9998898720244677664300001022178--33530024786324267733200-22---568999999999998974
Q gi|254780623|r 207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACG-HD---LERLSVTLVQSFLLHTLR 280 (517)
Q Consensus 207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~-~d---~~~la~~l~~~~~~qi~~ 280 (517)
T Consensus 46 --~~il~~~~----~Hp~--Iv~l~~~f~~~~~lylVmEy~~GGdL~~~--l~~~~~l~e~~a~~~~~qi~~a-L~yLH~ 114 (329)
T cd05618 46 --KHVFEQAS----NHPF--LVGLHSCFQTESRLFFVIEYVNGGDLMFH--MQRQRKLPEEHARFYSAEISLA-LNYLHE 114 (329)
T ss_pred --HHHHHHHC----CCCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHHC
T ss_conf --99999713----9997--79599999989999999958898898999--9874999999999999999999-999863
Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf 4866178786228980289535743403121
Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517)
Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517)
T Consensus 115 ~~IiHRDLKPeNILld~~g~iKL~DFGlak~ 145 (329)
T cd05618 115 RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKE 145 (329)
T ss_pred CCEEECCCCCCCCCCCCCCCEEECCCHHHHH
T ss_conf 9689644572100315688566314005555