HHsearch alignment for GI: 254780623 and conserved domain: cd06648

>cd06648 STKc_PAK_II Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since g
Probab=98.80  E-value=2.9e-08  Score=83.20  Aligned_cols=147  Identities=19%  Similarity=0.246  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf             99999986766677888865555021288872368764031046887777889998753211468543346917999999
Q gi|254780623|r  116 IEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL  195 (517)
Q Consensus       116 ~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~  195 (517)
T Consensus        17 p~~~y~~l-~~IG~G~fg~V~~a~~~~--tg~~vAiK~i~~~--~--------------------~-----~-------~   59 (285)
T cd06648          17 PRSYLDNF-VKIGEGSTGIVCIATDKS--TGRQVAVKKMDLR--K--------------------Q-----Q-------R   59 (285)
T ss_pred             HHHHCEEE-EEECCCCCEEEEEEEECC--CCCEEEEEEEECC--C--------------------C-----C-------H
T ss_conf             47870788-996237691999999889--9989999998411--1--------------------0-----1-------3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHH
Q ss_conf             988788865599998898720244677664300001022178--3353002478632426773320022568---99999
Q gi|254780623|r  196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLER---LSVTL  270 (517)
Q Consensus       196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l  270 (517)
T Consensus        60 ~~~------~~~Ei~il~~l~H-----pn--IV~~~~~~~~~~~~~ivmE~~~gg~L~~~i--~~~~l~e~~~~~i~~qi  124 (285)
T cd06648          60 REL------LFNEVVIMRDYQH-----PN--IVEMYSSYLVGDELWVVMEFLEGGALTDIV--THTRMNEEQIATVCLAV  124 (285)
T ss_pred             HHH------HHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHHH--HCCCCCHHHHHHHHHHH
T ss_conf             999------9999999986899-----99--982999999899999999689999179998--73899999999999999


Q ss_pred             HHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             999999897448661787862289802895357434031216989
Q gi|254780623|r  271 VQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       271 ~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
T Consensus       125 l~a-L~yLH~~~IiHRDlKpeNILl~~~g~vKl~DFGla~~~~~~  168 (285)
T cd06648         125 LKA-LSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKE  168 (285)
T ss_pred             HHH-HHHHHHCCCEECCCCCHHEEECCCCCEEEEECCCCEECCCC
T ss_conf             999-99999789352547713268879998899954320333667