HHsearch alignment for GI: 254780623 and conserved domain: cd06648
>cd06648 STKc_PAK_II Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since g
Probab=98.80 E-value=2.9e-08 Score=83.20 Aligned_cols=147 Identities=19% Similarity=0.246 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 99999986766677888865555021288872368764031046887777889998753211468543346917999999
Q gi|254780623|r 116 IEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL 195 (517)
Q Consensus 116 ~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 195 (517)
T Consensus 17 p~~~y~~l-~~IG~G~fg~V~~a~~~~--tg~~vAiK~i~~~--~--------------------~-----~-------~ 59 (285)
T cd06648 17 PRSYLDNF-VKIGEGSTGIVCIATDKS--TGRQVAVKKMDLR--K--------------------Q-----Q-------R 59 (285)
T ss_pred HHHHCEEE-EEECCCCCEEEEEEEECC--CCCEEEEEEEECC--C--------------------C-----C-------H
T ss_conf 47870788-996237691999999889--9989999998411--1--------------------0-----1-------3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHH
Q ss_conf 988788865599998898720244677664300001022178--3353002478632426773320022568---99999
Q gi|254780623|r 196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLER---LSVTL 270 (517)
Q Consensus 196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l 270 (517)
T Consensus 60 ~~~------~~~Ei~il~~l~H-----pn--IV~~~~~~~~~~~~~ivmE~~~gg~L~~~i--~~~~l~e~~~~~i~~qi 124 (285)
T cd06648 60 REL------LFNEVVIMRDYQH-----PN--IVEMYSSYLVGDELWVVMEFLEGGALTDIV--THTRMNEEQIATVCLAV 124 (285)
T ss_pred HHH------HHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHHH--HCCCCCHHHHHHHHHHH
T ss_conf 999------9999999986899-----99--982999999899999999689999179998--73899999999999999
Q ss_pred HHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf 999999897448661787862289802895357434031216989
Q gi|254780623|r 271 VQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517)
Q Consensus 271 ~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517)
T Consensus 125 l~a-L~yLH~~~IiHRDlKpeNILl~~~g~vKl~DFGla~~~~~~ 168 (285)
T cd06648 125 LKA-LSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKE 168 (285)
T ss_pred HHH-HHHHHHCCCEECCCCCHHEEECCCCCEEEEECCCCEECCCC
T ss_conf 999-99999789352547713268879998899954320333667