HHsearch alignment for GI: 254780623 and conserved domain: cd06657
>cd06657 STKc_PAK4 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability a
Probab=98.82 E-value=2.9e-08 Score=83.16 Aligned_cols=147 Identities=18% Similarity=0.231 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 99999986766677888865555021288872368764031046887777889998753211468543346917999999
Q gi|254780623|r 116 IEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL 195 (517)
Q Consensus 116 ~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 195 (517)
T Consensus 18 p~~~y~~~~-kIG~G~fg~V~~a~~~~--tg~~vAiK~i~~--------------------~~--~-----~-------~ 60 (292)
T cd06657 18 PRTYLDNFI-KIGEGSTGIVCIATVKS--SGKLVAVKKMDL--------------------RK--Q-----Q-------R 60 (292)
T ss_pred HHHHCCCCE-EECCCCCCEEEEEEECC--CCCEEEEEEEEC--------------------CC--C-----C-------H
T ss_conf 489775286-96228881999999889--998999999830--------------------56--4-----0-------3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHH
Q ss_conf 98878886559999889872024467766430000102217--83353002478632426773320022568---99999
Q gi|254780623|r 196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRACGHDLER---LSVTL 270 (517)
Q Consensus 196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l 270 (517)
T Consensus 61 ~~~~------~~Ei~il~~l~H-----pnI--v~l~~~~~~~~~~ylvmEy~~gG~L~~~~~--~~~l~e~~i~~i~~qi 125 (292)
T cd06657 61 RELL------FNEVVIMRDYQH-----ENV--VEMYNSYLVGDELWVVMEFLEGGALTDIVT--HTRMNEEQIAAVCLAV 125 (292)
T ss_pred HHHH------HHHHHHHHHCCC-----CCC--CCEEEEEEECCEEEEEEECCCCCCHHHHHH--HCCCCHHHHHHHHHHH
T ss_conf 8999------999999986799-----899--829899998999999996769787999998--1899999999999999
Q ss_pred HHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf 999999897448661787862289802895357434031216989
Q gi|254780623|r 271 VQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517)
Q Consensus 271 ~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517)
T Consensus 126 l~a-L~yLH~~~IiHRDiKpeNILl~~~g~iKL~DFGla~~~~~~ 169 (292)
T cd06657 126 LKA-LSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE 169 (292)
T ss_pred HHH-HHHHHHCCCEEEECCCHHEEECCCCCEEEEEEEEEEECCCC
T ss_conf 999-99999789453226713067858998899960213664777