HHsearch alignment for GI: 254780623 and conserved domain: cd06659
>cd06659 STKc_PAK6 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase
Probab=98.88 E-value=1.2e-08 Score=86.16 Aligned_cols=161 Identities=19% Similarity=0.213 Sum_probs=99.1
Q ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 98999998754047889999998676667788886555502128887236876403104688777788999875321146
Q gi|254780623|r 100 PTNTARLSVASALKAPIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKL 179 (517)
Q Consensus 100 ~~~~v~~~ie~elg~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~ 179 (517)
T Consensus 5 ~~~~~~~~~~~~-~-dp~~~fe~~~-~iG~G~fg~V~~a~~k~--tg~~vAiK~i~~~--------------------~- 58 (297)
T cd06659 5 QFKAALRMVVDQ-G-DPRSLLENYI-KIGEGSTGIVCIAREKH--SGRQVAVKMMDLR--------------------K- 58 (297)
T ss_pred HHHHHHHHHCCC-C-CHHHHCCCCE-EECCCCCCEEEEEEECC--CCCEEEEEEEECC--------------------C-
T ss_conf 999999987489-9-9689702176-96038882999999899--9989999998605--------------------5-
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHH
Q ss_conf 8543346917999999988788865599998898720244677664300001022178--33530024786324267733
Q gi|254780623|r 180 LPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLR 257 (517)
Q Consensus 180 ~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~ 257 (517)
T Consensus 59 -~-----~-------~~~~------~~~Ei~il~~l~H-----pnI--v~l~~~~~~~~~~~ivmEy~~gg~L~~~~--~ 110 (297)
T cd06659 59 -Q-----Q-------RREL------LFNEVVIMRDYQH-----QNV--VEMYKSYLVGEELWVLMEFLQGGALTDIV--S 110 (297)
T ss_pred -C-----C-------HHHH------HHHHHHHHHHCCC-----CCC--CEEEEEEEECCEEEEEEECCCCCCHHHHH--H
T ss_conf -2-----0-------4899------9999999997799-----899--91999999899999999678989389998--7
Q ss_pred HHCCCHHH---HHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf 20022568---99999999999897448661787862289802895357434031216989
Q gi|254780623|r 258 ACGHDLER---LSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517)
Q Consensus 258 ~~~~d~~~---la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517)
T Consensus 111 ~~~l~e~~~~~i~~qil~a-L~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFG~a~~~~~~ 170 (297)
T cd06659 111 QTRLNEEQIATVCESVLQA-LCYLHSQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKD 170 (297)
T ss_pred CCCCCHHHHHHHHHHHHHH-HHHHHHCCEEECCCCCHHEEECCCCCEEEEECCCCEECCCC
T ss_conf 2899999999999999999-99999789664668700079989998999965784442688