HHsearch alignment for GI: 254780623 and conserved domain: cd07846
>cd07846 STKc_CDKL2_3 The catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3 subfamily. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, a
Probab=98.78 E-value=1.3e-08 Score=85.83 Aligned_cols=142 Identities=17% Similarity=0.278 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517)
Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517)
T Consensus 7 ~~iG~G~fg~Vy~~~~~~--t~~~vAiK~~~~~~~~--------------------------------~~~~~~~----- 47 (286)
T cd07846 7 GLVGEGSYGMVMKCRHKE--TGQIVAIKKFLESEDD--------------------------------KMVKKIA----- 47 (286)
T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCCC--------------------------------HHHHHHH-----
T ss_conf 188337087999999889--9989999998210156--------------------------------7889999-----
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHC
Q ss_conf 599998898720244677664300001022178335300247863242677332002256---89999999999989744
Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLE---RLSVTLVQSFLLHTLRD 281 (517)
Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~l~~~~~~qi~~~ 281 (517)
T Consensus 48 -~~Ei~il~~l~H----pnIv~~~~~~~-~~~~~~iv~E~~~~~~l~~l~~~~-~~l~~~~i~~i~~qil~al-~ylH~~ 119 (286)
T cd07846 48 -MREIRMLKQLRH----ENLVNLIEVFR-RKKRLYLVFEFVDHTVLDDLEKYP-NGLDESRVRKYLFQVLRGI-EFCHSH 119 (286)
T ss_pred -HHHHHHHHHCCC----CCCCCEEEEEE-ECCEEEEEEECCCCCCHHHHHHCC-CCCCHHHHHHHHHHHHHHH-HHHHHC
T ss_conf -999999986799----79991999999-899899999589988299998626-9989999999999999999-999978
Q ss_pred CEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf 86617878622898028953574340312169
Q gi|254780623|r 282 GFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517)
Q Consensus 282 GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517)
T Consensus 120 ~iiHRDlKpeNILl~~~~~iKl~DFGla~~~~ 151 (286)
T cd07846 120 NIIHRDIKPENILVSQSGVVKLCDFGFARTLA 151 (286)
T ss_pred CCEECCCCHHHEEECCCCCEEEEECCCHHHCC
T ss_conf 93526587899678889989983323034306