HHsearch alignment for GI: 254780623 and conserved domain: cd07868
>cd07868 STKc_CDK8 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating R
Probab=98.60 E-value=1e-07 Score=79.02 Aligned_cols=140 Identities=20% Similarity=0.286 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 66778888655550212888723687640310468877778899987532114685433469179999999887888655
Q gi|254780623|r 126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL 205 (517)
Q Consensus 126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~ 205 (517)
T Consensus 8 kiG~G~fg~V~~~~~~d~~~~~~~AiK~i~~~---------------------------~~~~---------~~------ 45 (317)
T cd07868 8 KVGRGTYGHVYKAKRKDGKDDRDYALKQIEGT---------------------------GISM---------SA------ 45 (317)
T ss_pred EEEECCCEEEEEEEEECCCCCEEEEEEEECCC---------------------------CCCH---------HH------
T ss_conf 84106181999999842863849999998988---------------------------7858---------99------
Q ss_pred HHHHHHHHHHHCCCCCCCC-CCCHHCCCHHCCC-CEEEEECCCCCCCCHHHHHHHH-CCC--HHHHHHHHHHHHHHHHH-
Q ss_conf 9999889872024467766-4300001022178-3353002478632426773320-022--56899999999999897-
Q gi|254780623|r 206 RLEAAAFSEMAENTVKDQG-FRVPKIDWNRTER-DVITMEWIDGVKISDTEKLRAC-GHD--LERLSVTLVQSFLLHTL- 279 (517)
Q Consensus 206 ~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~st~-~VLvmE~i~G~~i~d~~~l~~~-~~d--~~~la~~l~~~~~~qi~- 279 (517)
T Consensus 46 ~rEi~iL~~l~-----hpniv~l~~~~~~~~~~~~~lv~e~~~~~-L~~~~~~~~~~~~~~~~~~l~~~~i~~~~~qil~ 119 (317)
T cd07868 46 CREIALLRELK-----HPNVISLQKVFLSHADRKVWLLFDYAEHD-LWHIIKFHRASKANKKPVQLPRGMVKSLLYQILD 119 (317)
T ss_pred HHHHHHHHHCC-----CCCCCCEEEEEEECCCCEEEEEEECCCCC-HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999998679-----98998488999707997799999627997-8999987220100157667899999999999999
Q ss_pred ------HCCEECCCCCCCEEEEE----CCCCEEEEECCHHEECC
Q ss_conf ------44866178786228980----28953574340312169
Q gi|254780623|r 280 ------RDGFFHADLHPGNLFVD----SKGYIVAVDMGITGRLS 313 (517)
Q Consensus 280 ------~~GfFHaDPHpGNi~v~----~dg~i~~lDfG~vg~l~ 313 (517)
T Consensus 120 al~ylH~~~IiHRDlKP~NILi~~~~~~~~~vKi~DFG~a~~~~ 163 (317)
T cd07868 120 GIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFN 163 (317)
T ss_pred HHHHHHHCCEEECCCCCCEEEEECCCCCCCCEEECCCCCCEECC
T ss_conf 99999878966057870207872368877857873565025647