Query         gi|254780623|ref|YP_003065036.1| 2-polyprenylphenol 6-hydroxylase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 517
No_of_seqs    191 out of 2356
Neff          7.3 
Searched_HMMs 39220
Date          Sun May 29 22:15:31 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780623.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK04750 ubiB putative ubiquin 100.0       0       0 1014.5  52.8  508    1-515     1-513 (540)
  2 TIGR01982 UbiB 2-polyprenylphe 100.0       0       0 1029.7  33.7  437    4-441     1-451 (452)
  3 COG0661 AarF Predicted unusual 100.0       0       0  892.5  47.1  463    2-468     5-470 (517)
  4 KOG1235 consensus              100.0       0       0  657.9  28.1  366   53-429    94-485 (538)
  5 KOG1236 consensus              100.0       0       0  527.8  25.9  376   53-429   121-556 (565)
  6 KOG1234 consensus              100.0 3.5E-40 8.4E-45  330.6  24.3  336   79-422     8-352 (363)
  7 pfam03109 ABC1 ABC1 family. Th 100.0 4.3E-30 1.1E-34  252.4   9.4  116  110-231     1-117 (117)
  8 pfam01163 RIO1 RIO1 family. Th  99.2 2.7E-10 6.9E-15   99.0  11.6  178  135-347     2-181 (186)
  9 cd05144 RIO2_C RIO kinase fami  99.2 5.1E-11 1.3E-15  104.6   6.8  161  120-313    16-176 (198)
 10 cd05119 RIO RIO kinase family,  99.2 1.6E-10 4.1E-15  100.7   8.7  156  126-313     4-165 (187)
 11 smart00090 RIO RIO-like kinase  99.1 5.2E-10 1.3E-14   96.7  10.4  198  121-356    30-233 (237)
 12 cd05145 RIO1_like RIO kinase f  99.1 6.7E-10 1.7E-14   95.9   9.5  161  126-314     4-169 (190)
 13 cd05038 PTKc_Jak_rpt2 Catalyti  99.1 5.8E-09 1.5E-13   88.6  13.2  142  125-314    10-161 (279)
 14 COG1718 RIO1 Serine/threonine   99.1 4.3E-09 1.1E-13   89.6  12.5  196  126-359    55-253 (268)
 15 cd05123 STKc_AGC STKc_AGC: Ser  99.0 3.4E-09 8.8E-14   90.4  10.7  141  127-316     1-147 (250)
 16 cd06608 STKc_myosinIII_like Se  99.0 8.6E-10 2.2E-14   95.0   5.7  145  125-315    12-166 (275)
 17 smart00220 S_TKc Serine/Threon  99.0 5.8E-09 1.5E-13   88.7   9.8  134  132-316     2-141 (244)
 18 cd05612 STKc_PRKX_like STKc_PR  99.0 1.9E-09 4.9E-14   92.3   7.3  138  125-314     7-153 (291)
 19 cd00180 S_TKc Serine/Threonine  99.0 9.3E-10 2.4E-14   94.8   5.6  141  125-315     6-152 (256)
 20 COG0478 RIO-like serine/threon  99.0 8.7E-09 2.2E-13   87.2  10.5  185  122-345    94-278 (304)
 21 cd05122 PKc_STE Protein Kinase  99.0 1.2E-09 3.2E-14   93.8   5.9  139  125-315     6-150 (253)
 22 cd05580 STKc_PKA STKc_PKA: Ser  99.0 4.3E-09 1.1E-13   89.7   8.7  139  125-315     7-154 (290)
 23 cd05147 RIO1_euk RIO kinase fa  99.0 4.2E-09 1.1E-13   89.7   8.6  160  126-313     4-168 (190)
 24 cd05115 PTKc_Zap-70 Catalytic   98.9 1.2E-08   3E-13   86.3  10.4  141  127-315     3-148 (257)
 25 cd05075 PTKc_Axl Catalytic Dom  98.9   3E-09 7.8E-14   90.8   7.4  153  123-314     3-164 (272)
 26 PRK13184 pknD serine/threonine  98.9 1.8E-09 4.6E-14   92.6   5.7  138  125-309     8-160 (933)
 27 cd05063 PTKc_EphR_A2 Catalytic  98.9 9.2E-09 2.4E-13   87.1   9.0  143  124-314    10-159 (268)
 28 cd05112 PTKc_Itk Catalytic Dom  98.9   4E-09   1E-13   89.9   7.1  136  125-312    10-150 (256)
 29 cd06639 STKc_myosinIIIB Serine  98.9 3.1E-10   8E-15   98.4   1.4  154  110-315    15-181 (291)
 30 cd05581 STKc_PDK1 STKc_PDK1: S  98.9 8.4E-09 2.1E-13   87.4   8.6  143  125-318     7-158 (279)
 31 cd05120 APH_ChoK_like Aminogly  98.9 1.1E-08 2.7E-13   86.5   9.0  141  125-319     4-146 (155)
 32 pfam00069 Pkinase Protein kina  98.9 2.7E-09 6.8E-14   91.2   5.9  141  125-314     5-150 (260)
 33 cd05041 PTKc_Fes_like Catalyti  98.9 5.8E-09 1.5E-13   88.6   7.6  137  125-311     1-142 (251)
 34 cd06620 PKc_MAPKK_Byr1_like Pr  98.9 6.3E-09 1.6E-13   88.3   7.7  144  121-314     5-156 (284)
 35 cd06614 STKc_PAK Serine/threon  98.9 6.8E-09 1.7E-13   88.1   7.7  161  104-315     4-170 (287)
 36 cd05113 PTKc_Btk_Bmx Catalytic  98.9 1.3E-08 3.4E-13   85.8   9.1  142  121-314     4-152 (256)
 37 cd05114 PTKc_Tec_Rlk Catalytic  98.9 3.6E-09 9.2E-14   90.2   6.2  141  121-313     4-151 (256)
 38 PRK09605 O-sialoglycoprotein e  98.9 1.7E-08 4.2E-13   85.1   9.5   91  205-310   385-475 (536)
 39 cd05059 PTKc_Tec_like Catalyti  98.9 4.2E-09 1.1E-13   89.7   6.4  140  121-312     4-150 (256)
 40 cd06623 PKc_MAPKK_plant_like P  98.9 2.2E-09 5.5E-14   92.0   4.9  141  122-314     2-152 (264)
 41 cd06605 PKc_MAPKK Protein kina  98.9 2.1E-08 5.2E-13   84.4   9.6  142  125-315     7-154 (265)
 42 cd05146 RIO3_euk RIO kinase fa  98.9 1.4E-08 3.5E-13   85.7   8.7  185  126-339     4-194 (197)
 43 cd06659 STKc_PAK6 Serine/threo  98.9 1.2E-08 3.1E-13   86.2   8.4  161  100-315     5-170 (297)
 44 cd05095 PTKc_DDR2 Catalytic Do  98.9 2.3E-08 5.9E-13   84.0   9.8  145  122-314     8-182 (296)
 45 cd07841 STKc_CDK7 The catalyti  98.9 7.1E-09 1.8E-13   87.9   7.0  140  125-314     6-154 (298)
 46 cd05079 PTKc_Jak1_rpt2 Catalyt  98.9 2.2E-08 5.5E-13   84.2   9.3  147  125-315    10-162 (284)
 47 cd05085 PTKc_Fer Catalytic Dom  98.9 1.3E-08 3.3E-13   85.9   8.0  138  127-314     3-145 (250)
 48 cd06658 STKc_PAK5 Serine/threo  98.9 1.5E-08 3.8E-13   85.4   8.3  163  100-315     3-171 (292)
 49 cd06628 STKc_MAPKKK_Byr2_like   98.9 3.7E-09 9.3E-14   90.2   5.1  147  126-317     7-161 (267)
 50 cd05067 PTKc_Lck_Blk Catalytic  98.9 1.6E-08   4E-13   85.2   8.4  144  120-315     5-155 (260)
 51 smart00221 STYKc Protein kinas  98.9 1.3E-08 3.3E-13   85.9   7.9  143  125-316     5-152 (225)
 52 cd05096 PTKc_DDR1 Catalytic Do  98.8 2.3E-08 5.9E-13   84.0   9.1  144  122-312     8-188 (304)
 53 cd05065 PTKc_EphR_B Catalytic   98.8 1.7E-08 4.3E-13   85.0   8.3  147  121-315     4-159 (269)
 54 cd05074 PTKc_Tyro3 Catalytic D  98.8 1.4E-08 3.5E-13   85.7   7.8  145  124-314     4-165 (273)
 55 cd06612 STKc_MST1_2 Serine/thr  98.8   4E-08   1E-12   82.1  10.2  139  125-315     9-152 (256)
 56 cd06606 STKc_MAPKKK Serine/thr  98.8 1.3E-08 3.4E-13   85.8   7.7  142  125-315     6-153 (259)
 57 cd05033 PTKc_EphR Catalytic Do  98.8 2.9E-08 7.4E-13   83.2   9.3  146  122-314     7-158 (266)
 58 cd06635 STKc_TAO1 Serine/threo  98.8 8.2E-08 2.1E-12   79.7  11.4  152  115-315    22-178 (317)
 59 cd06650 PKc_MEK1 MEK1 (MAPKK1   98.8 4.5E-09 1.1E-13   89.5   4.9  142  122-314     6-156 (333)
 60 cd05049 PTKc_Trk Catalytic Dom  98.8   2E-08 5.1E-13   84.5   8.1  143  123-313     9-173 (280)
 61 cd05610 STKc_MASTL STKc_MASTL:  98.8   6E-09 1.5E-13   88.5   5.5  141  122-311     5-153 (669)
 62 cd00192 PTKc Catalytic Domain   98.8 7.4E-09 1.9E-13   87.8   5.8  144  125-315     1-157 (261)
 63 cd05148 PTKc_Srm_Brk Catalytic  98.8 2.5E-08 6.4E-13   83.7   8.6  144  120-314     5-156 (261)
 64 cd06657 STKc_PAK4 Serine/threo  98.8 2.9E-08 7.5E-13   83.2   8.9  147  116-315    18-169 (292)
 65 cd06607 STKc_TAO Serine/threon  98.8 1.3E-08 3.2E-13   86.0   6.8  151  115-314    12-167 (307)
 66 cd05097 PTKc_DDR_like Catalyti  98.8 8.7E-08 2.2E-12   79.5  11.1  143  122-313     8-180 (295)
 67 cd06643 STKc_SLK Serine/threon  98.8 2.2E-08 5.7E-13   84.1   8.0  148  116-314     3-155 (282)
 68 cd06917 STKc_NAK1_like Serine/  98.8 1.6E-08 4.1E-13   85.2   7.3  143  125-315     7-154 (277)
 69 cd06649 PKc_MEK2 MEK2 (MAPKK2   98.8 6.4E-09 1.6E-13   88.3   5.2  143  122-315     6-157 (331)
 70 cd06615 PKc_MEK MEK1/2 (MAPK k  98.8 9.8E-09 2.5E-13   86.9   6.0  136  125-314     7-152 (308)
 71 cd06654 STKc_PAK1 Serine/threo  98.8 2.1E-08 5.2E-13   84.4   7.6  139  125-315    26-169 (296)
 72 cd06638 STKc_myosinIIIA Serine  98.8   1E-08 2.6E-13   86.7   6.0  140  125-314    24-176 (286)
 73 cd05625 STKc_LATS1 STKc_LATS1:  98.8 3.7E-09 9.5E-14   90.1   3.7  136  125-312     7-151 (382)
 74 pfam07714 Pkinase_Tyr Protein   98.8 1.6E-08 4.1E-13   85.2   7.0  145  124-315     4-155 (258)
 75 cd06627 STKc_Cdc7_like Serine/  98.8 2.9E-09 7.5E-14   90.9   3.2  137  125-314     6-151 (254)
 76 cd06621 PKc_MAPKK_Pek1_like Pr  98.8   1E-08 2.6E-13   86.7   6.0  143  125-314     7-157 (287)
 77 cd05064 PTKc_EphR_A10 Catalyti  98.8 2.6E-08 6.5E-13   83.6   7.9  143  121-310     5-155 (266)
 78 cd06648 STKc_PAK_II Serine/thr  98.8 2.9E-08 7.4E-13   83.2   8.2  147  116-315    17-168 (285)
 79 cd05574 STKc_phototropin_like   98.8 1.2E-08 3.1E-13   86.1   6.2  141  125-315     7-156 (315)
 80 cd05579 STKc_MAST_like STKc_MA  98.8 1.1E-08 2.8E-13   86.5   6.0  132  127-310     1-141 (265)
 81 cd05032 PTKc_InsR_like Catalyt  98.8 7.7E-08   2E-12   79.9  10.1  146  121-315     6-172 (277)
 82 cd05572 STKc_cGK_PKG STKc_cGK_  98.8 1.1E-08 2.7E-13   86.6   5.6  137  127-315     1-146 (262)
 83 cd06619 PKc_MKK5 Protein kinas  98.8 1.8E-08 4.5E-13   84.9   6.7  140  124-314     6-147 (279)
 84 cd07846 STKc_CDKL2_3 The catal  98.8 1.3E-08 3.4E-13   85.8   6.0  142  125-313     7-151 (286)
 85 cd06656 STKc_PAK3 Serine/threo  98.8 1.8E-08 4.6E-13   84.8   6.7  151  111-315    13-168 (297)
 86 cd05068 PTKc_Frk_like Catalyti  98.8 6.2E-08 1.6E-12   80.7   9.3  142  121-314     6-155 (261)
 87 cd06640 STKc_MST4 Serine/threo  98.8 1.5E-08 3.9E-13   85.4   6.1  148  116-315     2-154 (277)
 88 cd06637 STKc_TNIK Serine/threo  98.8   8E-09   2E-13   87.5   4.7  141  125-315    12-164 (272)
 89 cd05577 STKc_GRK STKc_GRK: Ser  98.8 8.3E-08 2.1E-12   79.7   9.8  144  127-316     1-149 (277)
 90 cd05600 STKc_Sid2p_Dbf2p STKc_  98.8 2.2E-08 5.7E-13   84.1   6.8  224  125-433     7-242 (333)
 91 cd05614 STKc_MSK2_N STKc_MSK2_  98.8 2.5E-08 6.2E-13   83.8   6.9  143  125-312     6-155 (332)
 92 cd05595 STKc_PKB_beta STKc_PKB  98.8 5.7E-08 1.4E-12   81.0   8.8  136  127-311     3-144 (323)
 93 cd06626 STKc_MEKK4 Serine/thre  98.8 2.3E-08 5.9E-13   84.0   6.8  141  125-315     6-152 (264)
 94 cd05073 PTKc_Hck Catalytic Dom  98.8 1.3E-08 3.4E-13   85.8   5.5  142  120-314     5-154 (260)
 95 cd06641 STKc_MST3 Serine/threo  98.8 1.7E-08 4.3E-13   85.0   6.1  144  116-315     2-154 (277)
 96 cd05573 STKc_ROCK_NDR_like STK  98.8 1.7E-08 4.2E-13   85.1   6.0  139  125-315     7-154 (354)
 97 cd06655 STKc_PAK2 Serine/threo  98.8 2.5E-08 6.3E-13   83.7   6.9  151  111-315    13-168 (296)
 98 cd05035 PTKc_Axl_like Catalyti  98.8 1.2E-08 2.9E-13   86.3   5.2  152  124-314     4-165 (273)
 99 cd05630 STKc_GRK6 STKc_GRK6: S  98.8 6.9E-08 1.8E-12   80.3   9.1  144  125-315     6-155 (285)
100 cd05072 PTKc_Lyn Catalytic Dom  98.8 3.6E-08 9.2E-13   82.5   7.6  143  121-315     6-156 (261)
101 smart00219 TyrKc Tyrosine kina  98.8 2.9E-08 7.5E-13   83.2   7.0  143  123-314     3-155 (258)
102 cd06609 STKc_MST3_like Serine/  98.8   4E-08   1E-12   82.1   7.6  140  125-315     7-151 (274)
103 cd06645 STKc_MAP4K3 Serine/thr  98.7 2.7E-08 6.9E-13   83.4   6.5  143  121-315     9-159 (267)
104 cd05571 STKc_PKB STKc_PKB: Ser  98.7 1.2E-07   3E-12   78.5   9.7  136  127-311     3-144 (323)
105 cd05633 STKc_GRK3 STKc_GRK3: S  98.7 3.2E-08 8.2E-13   82.9   6.8  143  127-315     2-150 (279)
106 cd05042 PTKc_Aatyk Catalytic D  98.7 5.8E-08 1.5E-12   80.8   8.1  140  125-311     1-149 (269)
107 cd05092 PTKc_TrkA Catalytic Do  98.7 6.9E-08 1.8E-12   80.3   8.4  144  124-315    10-175 (280)
108 cd05609 STKc_MAST STKc_MAST: S  98.7 7.8E-08   2E-12   79.9   8.7  137  125-310     7-149 (305)
109 cd07836 STKc_Pho85 The catalyt  98.7 2.7E-08 6.9E-13   83.5   6.3  136  125-312     6-150 (284)
110 cd06613 STKc_MAP4K3_like Serin  98.7 1.7E-08 4.3E-13   85.0   5.2  140  124-315     8-153 (261)
111 cd05051 PTKc_DDR Catalytic Dom  98.7   2E-07 5.2E-12   76.6  10.7  142  124-313    10-181 (296)
112 cd07867 STKc_CDC2L6 The cataly  98.7 3.5E-08   9E-13   82.6   6.7  142  126-314     8-164 (317)
113 cd05080 PTKc_Tyk2_rpt2 Catalyt  98.7 7.6E-08 1.9E-12   80.0   8.5  140  125-314    10-159 (283)
114 cd05608 STKc_GRK1 STKc_GRK1: S  98.7 4.4E-08 1.1E-12   81.8   7.2  141  127-314     1-149 (280)
115 cd05611 STKc_Rim15_like STKc_R  98.7 2.3E-08 5.8E-13   84.0   5.6  135  125-310     2-145 (260)
116 PTZ00263 protein kinase A cata  98.7 9.4E-08 2.4E-12   79.3   8.7  145  121-314    18-170 (329)
117 cd05069 PTKc_Yes Catalytic Dom  98.7   3E-08 7.6E-13   83.1   6.2  144  120-315     5-155 (260)
118 cd06652 STKc_MEKK2 Serine/thre  98.7 3.5E-08 8.9E-13   82.6   6.5  139  125-313     8-157 (265)
119 cd07875 STKc_JNK1 The catalyti  98.7 3.6E-08 9.3E-13   82.4   6.6  149  121-314    24-178 (364)
120 cd06653 STKc_MEKK3_like_1 Seri  98.7   3E-08 7.8E-13   83.0   6.2  143  125-314     8-158 (264)
121 cd05081 PTKc_Jak2_Jak3_rpt2 Ca  98.7 9.1E-08 2.3E-12   79.4   8.6  144  125-313    10-159 (284)
122 cd06625 STKc_MEKK3_like Serine  98.7 3.3E-08 8.5E-13   82.7   6.4  140  125-314     8-156 (263)
123 cd05066 PTKc_EphR_A Catalytic   98.7 8.3E-08 2.1E-12   79.7   8.4  146  123-314     8-158 (267)
124 cd05118 STKc_CMGC The catalyti  98.7 3.1E-08 7.8E-13   83.0   6.1  138  125-315     5-151 (283)
125 cd07830 STKc_MAK_like The cata  98.7 2.6E-08 6.5E-13   83.6   5.7  139  125-314     5-151 (283)
126 cd06642 STKc_STK25_YSK1 Serine  98.7 3.3E-08 8.4E-13   82.8   6.2  148  116-315     2-154 (277)
127 cd05082 PTKc_Csk Catalytic Dom  98.7 9.5E-08 2.4E-12   79.2   8.4  144  120-314     5-154 (256)
128 cd06622 PKc_MAPKK_PBS2_like Pr  98.7 4.1E-08   1E-12   82.1   6.5  142  125-314     7-155 (286)
129 cd05626 STKc_LATS2 STKc_LATS2:  98.7 2.3E-08 5.8E-13   84.0   5.1  139  125-312     7-151 (381)
130 cd07850 STKc_JNK The catalytic  98.7   2E-08 5.2E-13   84.4   4.9  153  118-315    13-171 (353)
131 cd06633 STKc_TAO3 Serine/threo  98.7 7.4E-08 1.9E-12   80.1   7.7  151  115-314    18-173 (313)
132 cd07839 STKc_CDK5 The catalyti  98.7 1.9E-08 4.9E-13   84.6   4.7  138  125-313     6-150 (284)
133 cd05575 STKc_SGK STKc_SGK: Ser  98.7 2.8E-08 7.2E-13   83.3   5.6  134  127-311     3-145 (323)
134 cd05583 STKc_MSK_N STKc_MSK_N:  98.7 1.3E-07 3.4E-12   78.1   9.0  146  125-314     6-157 (288)
135 cd05628 STKc_NDR1 STKc_NDR1: S  98.7   4E-08   1E-12   82.1   6.3  146  125-319     7-158 (363)
136 cd05584 STKc_p70S6K STKc_p70S6  98.7 1.6E-07 4.2E-12   77.4   9.5  140  126-311     3-149 (323)
137 cd05601 STKc_CRIK STKc_CRIK: S  98.7 5.3E-08 1.4E-12   81.2   7.0  140  125-315     7-155 (330)
138 cd05039 PTKc_Csk_like Catalyti  98.7 5.4E-08 1.4E-12   81.1   7.0  137  123-312    10-152 (256)
139 cd05116 PTKc_Syk Catalytic Dom  98.7 3.4E-07 8.6E-12   75.0  11.0  141  126-314     2-147 (257)
140 cd07860 STKc_CDK2_3 The cataly  98.7 4.5E-08 1.1E-12   81.8   6.6  137  125-313     6-151 (284)
141 cd05034 PTKc_Src_like Catalyti  98.7 3.2E-08 8.2E-13   82.9   5.8  142  121-314     6-155 (261)
142 cd05631 STKc_GRK4 STKc_GRK4: S  98.7   2E-08 5.1E-13   84.5   4.7  144  125-315     6-155 (285)
143 cd07876 STKc_JNK2 The catalyti  98.7 3.4E-08 8.6E-13   82.7   5.9  151  119-314    19-175 (359)
144 cd05598 STKc_LATS STKc_LATS: S  98.7   3E-08 7.6E-13   83.1   5.5  142  122-312     2-151 (376)
145 cd05629 STKc_NDR_like_fungal S  98.7   6E-08 1.5E-12   80.8   7.1  137  125-313     7-152 (377)
146 cd07848 STKc_CDKL5 The catalyt  98.7 3.7E-08 9.3E-13   82.4   6.0  144  125-315     7-153 (287)
147 cd05632 STKc_GRK5 STKc_GRK5: S  98.7 8.1E-08 2.1E-12   79.7   7.7  145  123-314     2-154 (285)
148 cd06610 STKc_OSR1_SPAK Serine/  98.7 3.4E-08 8.8E-13   82.6   5.7  139  125-314     7-154 (266)
149 cd05052 PTKc_Abl Catalytic Dom  98.7 7.5E-08 1.9E-12   80.0   7.4  143  120-313     5-155 (263)
150 cd05605 STKc_GRK4_like STKc_GR  98.7 1.5E-07 3.8E-12   77.7   8.9  144  125-315     6-155 (285)
151 cd05586 STKc_Sck1_like STKc_Sc  98.7 1.1E-07 2.9E-12   78.6   8.3  135  127-310     1-144 (330)
152 cd06646 STKc_MAP4K5 Serine/thr  98.7 4.8E-08 1.2E-12   81.5   6.3  141  125-315    15-159 (267)
153 cd05110 PTKc_HER4 Catalytic Do  98.7 1.7E-07 4.4E-12   77.2   9.2  145  122-315     8-162 (303)
154 COG3642 Mn2+-dependent serine/  98.7 8.7E-08 2.2E-12   79.5   7.6   97  205-314    46-142 (204)
155 cd06630 STKc_MEKK1 Serine/thre  98.7 8.3E-08 2.1E-12   79.7   7.5  141  125-314     6-156 (268)
156 cd05098 PTKc_FGFR1 Catalytic D  98.7 2.3E-07 5.9E-12   76.2   9.8  161  108-314     3-192 (307)
157 cd07870 STKc_PFTAIRE2 The cata  98.7 9.5E-08 2.4E-12   79.2   7.7  133  125-311    11-152 (291)
158 cd05086 PTKc_Aatyk2 Catalytic   98.7 9.2E-08 2.3E-12   79.3   7.6  136  126-309     2-146 (268)
159 cd05046 PTK_CCK4 Catalytic Dom  98.7 1.3E-07 3.2E-12   78.2   8.3  145  121-312     5-167 (275)
160 cd05090 PTKc_Ror1 Catalytic Do  98.7 3.8E-08 9.8E-13   82.3   5.7  145  122-314     8-176 (283)
161 cd05606 STKc_beta_ARK STKc_bet  98.7 4.3E-08 1.1E-12   81.9   5.9  140  127-315     2-150 (278)
162 cd06651 STKc_MEKK3 Serine/thre  98.7 4.2E-08 1.1E-12   82.0   5.8  141  125-313     8-157 (266)
163 cd05590 STKc_nPKC_eta STKc_nPK  98.7 7.8E-08   2E-12   79.9   7.2  137  127-311     3-145 (320)
164 cd07851 STKc_p38 The catalytic  98.7 1.9E-07 4.7E-12   77.0   9.1  142  125-314    21-170 (343)
165 cd07834 STKc_MAPK The catalyti  98.7 1.4E-08 3.5E-13   85.8   3.2  138  125-314     6-155 (330)
166 cd05570 STKc_PKC STKc_PKC: Ser  98.7 1.7E-07 4.3E-12   77.3   8.7  134  127-311     3-145 (318)
167 PTZ00024 cyclin-dependent prot  98.7 9.2E-08 2.4E-12   79.3   7.4  143  125-313    14-162 (325)
168 cd05627 STKc_NDR2 STKc_NDR2: S  98.7 2.6E-08 6.5E-13   83.6   4.5  249  125-433     7-276 (360)
169 cd06611 STKc_SLK_like Serine/t  98.7 1.1E-07 2.9E-12   78.6   7.8  141  125-315    11-156 (280)
170 cd05587 STKc_cPKC STKc_cPKC:    98.7 1.1E-07 2.7E-12   78.9   7.6  139  125-311     6-150 (324)
171 cd07847 STKc_CDKL1_4 The catal  98.7 4.9E-08 1.2E-12   81.5   5.9  142  125-313     7-151 (286)
172 cd05087 PTKc_Aatyk1_Aatyk3 Cat  98.7 1.3E-07 3.4E-12   78.1   8.1  138  125-310     1-148 (269)
173 cd06629 STKc_MAPKKK_Bck1_like   98.7 3.7E-08 9.4E-13   82.4   5.3  144  125-313     7-159 (272)
174 cd05111 PTK_HER3 Pseudokinase   98.7 2.5E-07 6.5E-12   75.9   9.5  142  125-316    13-163 (279)
175 cd05593 STKc_PKB_gamma STKc_PK  98.7 1.3E-07 3.3E-12   78.2   8.0  136  127-311     3-144 (325)
176 cd05613 STKc_MSK1_N STKc_MSK1_  98.7 3.3E-08 8.3E-13   82.8   5.0  141  125-313     6-156 (290)
177 cd05057 PTKc_EGFR_like Catalyt  98.7 1.3E-07 3.3E-12   78.2   7.9  148  122-315     8-162 (279)
178 cd05603 STKc_SGK2 STKc_SGK2: S  98.7 1.6E-07   4E-12   77.5   8.3  137  127-311     3-145 (321)
179 cd05591 STKc_nPKC_epsilon STKc  98.7 1.7E-07 4.4E-12   77.2   8.4  134  127-311     3-145 (321)
180 cd07865 STKc_CDK9 The catalyti  98.7 8.9E-08 2.3E-12   79.4   6.9  142  122-313    13-170 (310)
181 cd05047 PTKc_Tie Catalytic Dom  98.6 6.8E-07 1.7E-11   72.6  11.4  142  127-312     3-162 (270)
182 cd05060 PTKc_Syk_like Catalyti  98.6 2.7E-07 6.8E-12   75.8   9.2  140  125-313     1-146 (257)
183 cd07880 STKc_p38gamma_MAPK12 T  98.6   8E-08   2E-12   79.8   6.5  145  125-314    21-170 (343)
184 cd07842 STKc_CDK8_like The cat  98.6   1E-07 2.6E-12   79.0   7.0  147  125-314     6-164 (315)
185 cd07864 STKc_CDK12 The catalyt  98.6 4.8E-08 1.2E-12   81.5   5.4  140  125-313    13-167 (302)
186 cd05044 PTKc_c-ros Catalytic D  98.6 1.2E-07 3.2E-12   78.3   7.4  140  126-313     2-163 (270)
187 cd07840 STKc_CDK9_like The cat  98.6 7.7E-08   2E-12   79.9   6.3  140  125-314     5-152 (287)
188 cd05599 STKc_NDR_like STKc_NDR  98.6 7.8E-08   2E-12   79.9   6.3  144  125-320     7-159 (364)
189 cd05058 PTKc_Met_Ron Catalytic  98.6 6.1E-07 1.6E-11   73.0  10.9  142  127-315     3-151 (262)
190 cd07833 STKc_CDKL The catalyti  98.6 5.1E-08 1.3E-12   81.3   5.3  142  125-315     7-153 (288)
191 cd05602 STKc_SGK1 STKc_SGK1: S  98.6 1.7E-07 4.4E-12   77.2   8.0  137  127-311     3-145 (325)
192 cd05624 STKc_MRCK_beta STKc_MR  98.6 3.2E-08 8.3E-13   82.8   4.3  141  125-314     7-154 (331)
193 cd05084 PTKc_Fes Catalytic Dom  98.6   2E-07 5.1E-12   76.7   8.3  138  126-312     2-144 (252)
194 cd06634 STKc_TAO2 Serine/threo  98.6 1.5E-07 3.8E-12   77.7   7.6  152  115-315    12-168 (308)
195 cd05615 STKc_cPKC_alpha STKc_c  98.6   4E-07   1E-11   74.4   9.8  139  125-311     6-150 (323)
196 cd05070 PTKc_Fyn_Yrk Catalytic  98.6 6.3E-08 1.6E-12   80.6   5.7  143  121-315     6-155 (260)
197 cd07831 STKc_MOK The catalytic  98.6 8.3E-08 2.1E-12   79.7   6.3  138  125-314     5-151 (282)
198 cd06636 STKc_MAP4K4_6 Serine/t  98.6 1.2E-07   3E-12   78.5   7.0  146  125-314    22-173 (282)
199 cd07829 STKc_CDK_like The cata  98.6 1.5E-07 3.8E-12   77.7   7.6  140  125-313     5-149 (282)
200 cd07861 STKc_CDK1_euk The cata  98.6 4.7E-08 1.2E-12   81.6   5.0  139  125-313     6-152 (285)
201 cd05585 STKc_YPK1_like STKc_YP  98.6 1.5E-07 3.8E-12   77.7   7.6  135  127-310     1-141 (312)
202 cd05062 PTKc_IGF-1R Catalytic   98.6 8.6E-08 2.2E-12   79.6   6.3  145  121-314     6-171 (277)
203 cd06632 STKc_MEKK1_plant Serin  98.6 6.5E-08 1.6E-12   80.5   5.6  140  125-314     6-154 (258)
204 cd05050 PTKc_Musk Catalytic Do  98.6 9.3E-08 2.4E-12   79.3   6.4  143  125-314    11-182 (288)
205 cd05616 STKc_cPKC_beta STKc_cP  98.6 4.7E-07 1.2E-11   73.8  10.0  139  125-311     6-150 (323)
206 cd07873 STKc_PCTAIRE1 The cata  98.6 7.4E-08 1.9E-12   80.0   5.8  133  125-311    12-153 (301)
207 cd07835 STKc_CDK1_like The cat  98.6   1E-07 2.6E-12   78.9   6.5  136  125-313     5-150 (283)
208 cd06644 STKc_STK10_LOK Serine/  98.6 2.6E-07 6.6E-12   75.8   8.5  139  125-313    18-161 (292)
209 cd07843 STKc_CDC2L1 The cataly  98.6 1.4E-07 3.7E-12   77.8   7.1  141  125-315    11-159 (293)
210 cd05088 PTKc_Tie2 Catalytic Do  98.6 7.5E-07 1.9E-11   72.3  10.7  145  120-310     6-172 (303)
211 cd05056 PTKc_FAK Catalytic Dom  98.6   2E-07 5.2E-12   76.6   7.8  144  123-315    10-160 (270)
212 cd05623 STKc_MRCK_alpha STKc_M  98.6 3.5E-08 8.9E-13   82.6   3.9  140  125-313     7-153 (332)
213 PTZ00266 NIMA-related protein   98.6 1.2E-07 3.1E-12   78.3   6.6  146  125-315    15-182 (484)
214 cd05582 STKc_RSK_N STKc_RSK_N:  98.6 1.4E-07 3.6E-12   77.9   6.9  138  126-311     3-147 (318)
215 cd05619 STKc_nPKC_theta STKc_n  98.6 2.6E-07 6.6E-12   75.8   8.2  137  127-311     3-145 (316)
216 cd07878 STKc_p38beta_MAPK11 Th  98.6 5.8E-08 1.5E-12   80.9   4.9  157  110-314     4-170 (343)
217 cd05589 STKc_PKN STKc_PKN: Ser  98.6 2.1E-07 5.4E-12   76.5   7.8  141  125-311     5-150 (324)
218 cd05597 STKc_DMPK_like STKc_DM  98.6 5.3E-08 1.4E-12   81.2   4.6  141  125-314     7-154 (331)
219 cd05091 PTKc_Ror2 Catalytic Do  98.6 5.8E-07 1.5E-11   73.1   9.9  148  121-316     5-178 (283)
220 cd07868 STKc_CDK8 The catalyti  98.6   1E-07 2.6E-12   79.0   5.9  140  126-313     8-163 (317)
221 cd05061 PTKc_InsR Catalytic Do  98.6 2.8E-07   7E-12   75.6   8.2  149  120-315     5-172 (288)
222 PRK10359 lipopolysaccharide co  98.6 2.6E-07 6.7E-12   75.8   8.0  130  145-310    53-182 (232)
223 cd05594 STKc_PKB_alpha STKc_PK  98.6 2.6E-07 6.7E-12   75.8   7.9  133  127-311     3-145 (324)
224 cd05083 PTKc_Chk Catalytic Dom  98.6 4.6E-07 1.2E-11   73.9   9.2  139  120-311     5-149 (254)
225 cd07844 STKc_PCTAIRE_like The   98.6 1.3E-07 3.2E-12   78.3   6.2  132  125-310    11-151 (291)
226 cd07845 STKc_CDK10 The catalyt  98.6 1.5E-07 3.8E-12   77.7   6.5  139  125-313    13-159 (309)
227 cd05620 STKc_nPKC_delta STKc_n  98.6 2.4E-07 6.1E-12   76.1   7.5  137  127-311     3-145 (316)
228 cd05578 STKc_Yank1 STKc_Yank1:  98.6 7.8E-08   2E-12   79.9   5.0  139  125-315     6-153 (258)
229 cd07871 STKc_PCTAIRE3 The cata  98.6 2.8E-07 7.2E-12   75.5   7.9  136  125-312    11-153 (288)
230 cd05054 PTKc_VEGFR Catalytic D  98.6 3.3E-07 8.4E-12   75.0   8.1   34  279-312   190-223 (337)
231 cd05048 PTKc_Ror Catalytic Dom  98.6 2.6E-07 6.6E-12   75.9   7.4  146  120-313     4-175 (283)
232 cd07855 STKc_ERK5 The catalyti  98.6 8.2E-08 2.1E-12   79.7   4.7  142  125-314    11-161 (336)
233 cd06647 STKc_PAK_I Serine/thre  98.6 2.1E-07 5.4E-12   76.5   6.7  139  125-315    25-168 (293)
234 cd05053 PTKc_FGFR Catalytic Do  98.6   3E-07 7.6E-12   75.4   7.5  154  115-314     6-185 (294)
235 cd05055 PTKc_PDGFR Catalytic D  98.6 1.5E-07 3.9E-12   77.6   6.0  152  116-312    30-191 (302)
236 cd07832 STKc_CCRK The catalyti  98.6 6.8E-08 1.7E-12   80.4   4.1  140  125-315     6-152 (286)
237 cd07869 STKc_PFTAIRE1 The cata  98.6 2.7E-07   7E-12   75.7   7.2  134  125-312    11-153 (303)
238 cd05040 PTKc_Ack_like Catalyti  98.6 4.3E-07 1.1E-11   74.2   8.2  142  125-314     1-149 (257)
239 cd05089 PTKc_Tie1 Catalytic Do  98.6 5.8E-07 1.5E-11   73.1   8.8  142  123-310     6-167 (297)
240 cd07874 STKc_JNK3 The catalyti  98.6 8.7E-08 2.2E-12   79.5   4.6  152  119-315    15-172 (355)
241 cd05592 STKc_nPKC_theta_delta   98.6 3.6E-07 9.2E-12   74.7   7.8  137  127-311     3-145 (316)
242 cd07877 STKc_p38alpha_MAPK14 T  98.5 3.3E-07 8.3E-12   75.1   7.4  156  111-314     7-172 (345)
243 cd07837 STKc_CdkB_plant The ca  98.5 1.5E-07 3.7E-12   77.8   5.5  141  125-313     7-162 (295)
244 cd07853 STKc_NLK The catalytic  98.5 2.5E-07 6.3E-12   76.0   6.7  143  125-315     6-156 (372)
245 cd07852 STKc_MAPK15 The cataly  98.5 6.5E-08 1.7E-12   80.5   3.7  147  119-315     5-160 (337)
246 cd06631 STKc_YSK4 Serine/threo  98.5 5.2E-08 1.3E-12   81.2   3.2  144  125-313     6-153 (265)
247 cd05621 STKc_ROCK2 STKc_ROCK2:  98.5 1.9E-07 4.8E-12   76.9   6.0  142  120-314    42-194 (370)
248 cd07879 STKc_p38delta_MAPK13 T  98.5 1.6E-07   4E-12   77.6   5.6  142  125-315    21-170 (342)
249 cd05101 PTKc_FGFR2 Catalytic D  98.5 3.1E-07 7.9E-12   75.3   7.1  155  114-314     8-189 (304)
250 cd05604 STKc_SGK3 STKc_SGK3: S  98.5   5E-07 1.3E-11   73.6   8.1  137  127-311     3-145 (325)
251 cd05596 STKc_ROCK STKc_ROCK: S  98.5 2.2E-07 5.6E-12   76.4   6.1  143  120-315    42-195 (370)
252 cd05607 STKc_GRK7 STKc_GRK7: S  98.5 3.3E-07 8.5E-12   75.0   7.1  141  127-314     1-147 (277)
253 cd05093 PTKc_TrkB Catalytic Do  98.5 2.3E-07 5.8E-12   76.2   6.2  144  124-313    10-171 (288)
254 cd06624 STKc_ASK Serine/threon  98.5 1.2E-07 3.1E-12   78.4   4.7  149  116-314     3-161 (268)
255 cd07866 STKc_BUR1 The catalyti  98.5 2.4E-07 6.1E-12   76.1   6.2  140  125-314    14-167 (311)
256 cd05617 STKc_aPKC_zeta STKc_aP  98.5 1.8E-07 4.6E-12   77.1   5.4  138  126-311     2-145 (327)
257 cd07849 STKc_ERK1_2_like The c  98.5   3E-07 7.6E-12   75.4   6.5  144  125-314    11-158 (336)
258 cd05094 PTKc_TrkC Catalytic Do  98.5 3.2E-07 8.3E-12   75.1   6.6  143  124-313    10-174 (291)
259 cd05588 STKc_aPKC STKc_aPKC: S  98.5 3.9E-07 9.9E-12   74.5   7.0  137  127-311     3-145 (329)
260 cd05618 STKc_aPKC_iota STKc_aP  98.5 1.8E-07 4.6E-12   77.1   5.1  137  127-311     3-145 (329)
261 cd06618 PKc_MKK7 Protein kinas  98.5 3.7E-07 9.4E-12   74.7   6.7  146  120-315    14-168 (296)
262 cd05622 STKc_ROCK1 STKc_ROCK1:  98.5 3.2E-07 8.2E-12   75.1   6.3  141  122-315    44-195 (371)
263 KOG0574 consensus               98.5 7.8E-07   2E-11   72.1   8.2  267  103-428    18-302 (502)
264 cd05108 PTKc_EGFR Catalytic Do  98.5 1.9E-06 4.7E-11   69.2  10.2  146  122-316     8-163 (316)
265 cd07859 STKc_TDY_MAPK_plant Th  98.5 5.5E-07 1.4E-11   73.3   7.3  139  125-312     6-153 (338)
266 cd07872 STKc_PCTAIRE2 The cata  98.5 6.8E-07 1.7E-11   72.6   7.7  135  125-311    12-153 (309)
267 cd07863 STKc_CDK4 The catalyti  98.5 4.8E-07 1.2E-11   73.7   6.8  146  125-314     6-160 (288)
268 cd07838 STKc_CDK4_6_like The c  98.5 9.8E-08 2.5E-12   79.1   3.2  144  125-315     5-160 (287)
269 PTZ00283 serine/threonine prot  98.5 6.3E-07 1.6E-11   72.8   7.3  254  125-432    38-304 (496)
270 cd05045 PTKc_RET Catalytic Dom  98.5 2.6E-06 6.6E-11   68.1  10.4  142  127-314     3-174 (285)
271 cd05109 PTKc_HER2 Catalytic Do  98.5 1.3E-06 3.4E-11   70.3   9.0  141  125-314    13-161 (279)
272 cd05036 PTKc_ALK_LTK Catalytic  98.5 7.3E-07 1.9E-11   72.3   7.4  147  121-313     6-170 (277)
273 cd05043 PTK_Ryk Pseudokinase D  98.5 4.9E-06 1.2E-10   66.0  11.6  147  123-314    10-169 (280)
274 KOG0611 consensus               98.5 2.9E-06 7.3E-11   67.7  10.2  227  122-407    56-289 (668)
275 cd06616 PKc_MKK4 Protein kinas  98.4   9E-07 2.3E-11   71.7   7.6  145  122-315     5-161 (288)
276 cd07854 STKc_MAPK4_6 The catal  98.4 4.2E-07 1.1E-11   74.2   5.6  145  125-315    11-168 (342)
277 KOG0661 consensus               98.4 5.6E-07 1.4E-11   73.2   6.3  180  125-360    16-202 (538)
278 cd05576 STKc_RPK118_like STKc_  98.4 2.4E-07 6.2E-12   76.1   4.3  125  130-314     4-137 (237)
279 cd05099 PTKc_FGFR4 Catalytic D  98.4 5.9E-07 1.5E-11   73.1   6.2  153  114-313     5-185 (314)
280 cd05100 PTKc_FGFR3 Catalytic D  98.4 1.4E-06 3.6E-11   70.2   7.7  152  116-314     7-186 (334)
281 KOG2270 consensus               98.4 1.8E-05 4.5E-10   61.6  12.9  220  125-390   150-376 (520)
282 cd07862 STKc_CDK6 The catalyti  98.4 2.3E-06 5.8E-11   68.5   8.2  145  125-314     7-162 (290)
283 cd05103 PTKc_VEGFR2 Catalytic   98.4   8E-07   2E-11   72.0   5.9   34  279-312   196-229 (343)
284 pfam03881 Fructosamin_kin Fruc  98.4 1.7E-06 4.2E-11   69.6   7.4  232  101-348     1-249 (287)
285 cd07856 STKc_Sty1_Hog1 The cat  98.4 1.4E-06 3.5E-11   70.2   7.0  140  125-312    16-158 (328)
286 KOG0594 consensus               98.4 1.3E-06 3.3E-11   70.5   6.8  146  117-311    10-169 (323)
287 pfam06176 WaaY Lipopolysacchar  98.4 7.8E-07   2E-11   72.1   5.6  130  145-310    53-182 (229)
288 cd07858 STKc_TEY_MAPK_plant Th  98.4   1E-06 2.6E-11   71.2   6.2  145  125-314    11-160 (337)
289 cd05078 PTK_Jak2_Jak3_rpt1 Pse  98.4 1.4E-06 3.7E-11   70.1   6.9  139  125-313     1-159 (258)
290 cd05071 PTKc_Src Catalytic Dom  98.4 8.3E-07 2.1E-11   71.9   5.5  142  120-314     5-154 (262)
291 cd05102 PTKc_VEGFR3 Catalytic   98.3 3.7E-06 9.5E-11   66.9   8.3   35  279-313   191-225 (338)
292 cd07857 STKc_MPK1 The catalyti  98.3   1E-06 2.6E-11   71.2   5.4  141  125-314     6-157 (332)
293 cd05106 PTKc_CSF-1R Catalytic   98.3 4.4E-06 1.1E-10   66.3   8.6   36  279-314   229-264 (374)
294 KOG0583 consensus               98.3 7.9E-07   2E-11   72.1   4.5  143  124-313    22-172 (370)
295 KOG0192 consensus               98.3 1.2E-05 3.1E-10   62.8  10.4  221  125-403    47-281 (362)
296 cd05104 PTKc_Kit Catalytic Dom  98.3 7.4E-06 1.9E-10   64.5   9.2   36  279-314   231-266 (375)
297 cd06617 PKc_MKK3_6 Protein kin  98.3 2.5E-07 6.3E-12   76.0   1.4  142  125-315     7-157 (280)
298 KOG2268 consensus               98.2 3.7E-06 9.4E-11   66.9   5.8  158  146-340   116-273 (465)
299 cd05037 PTK_Jak_rpt1 Pseudokin  98.2 9.2E-06 2.3E-10   63.8   7.6  148  125-312     1-158 (259)
300 cd05077 PTK_Jak1_rpt1 Pseudoki  98.2 9.1E-06 2.3E-10   63.9   7.3  139  125-310     1-160 (262)
301 KOG0595 consensus               98.2 3.2E-06 8.1E-11   67.4   4.9  138  126-316    17-169 (429)
302 cd05150 APH Aminoglycoside 3'-  98.1 0.00013 3.4E-09   54.8  12.8   77  282-361   164-243 (244)
303 cd05151 ChoK Choline Kinase (C  98.1 8.3E-06 2.1E-10   64.2   6.3  105  203-316    37-141 (170)
304 KOG0605 consensus               98.1 7.7E-06   2E-10   64.4   5.4  149  121-320   141-299 (550)
305 KOG0667 consensus               98.0 1.1E-05 2.7E-10   63.3   5.4  178  124-360   191-380 (586)
306 KOG0660 consensus               98.0 1.5E-05 3.9E-10   62.1   5.5  181  125-356    28-216 (359)
307 PTZ00284 protein kinase; Provi  98.0 3.8E-05 9.7E-10   59.0   7.3  180  125-360   135-337 (467)
308 cd05154 ACAD10_11_like Acyl-Co  97.9 6.1E-05 1.6E-09   57.5   8.2  144  126-316     5-211 (223)
309 KOG4250 consensus               97.9 2.3E-06 5.9E-11   68.5   0.9  149  124-316    18-178 (732)
310 KOG0193 consensus               97.9 1.3E-05 3.2E-10   62.7   4.6  146  114-311   385-537 (678)
311 KOG0600 consensus               97.9 2.1E-05 5.3E-10   61.1   5.6  154  112-321   111-277 (560)
312 cd05076 PTK_Tyk2_rpt1 Pseudoki  97.9 4.5E-06 1.1E-10   66.2   2.0  155  127-309     3-171 (274)
313 pfam01636 APH Phosphotransfera  97.9 9.2E-05 2.4E-09   56.1   8.6  183  125-316     3-203 (239)
314 KOG0610 consensus               97.9 5.9E-05 1.5E-09   57.5   7.2  144  119-312    75-229 (459)
315 KOG0581 consensus               97.9   3E-05 7.6E-10   59.9   5.6  148  122-319    80-236 (364)
316 cd05107 PTKc_PDGFR_beta Cataly  97.9 0.00012   3E-09   55.3   8.6   59  112-172    32-97  (401)
317 KOG0608 consensus               97.9 6.6E-05 1.7E-09   57.2   7.1  105  206-312   670-779 (1034)
318 KOG0198 consensus               97.8 2.8E-05 7.1E-10   60.1   5.0  138  125-314    23-170 (313)
319 PRK06148 hypothetical protein;  97.8  0.0003 7.6E-09   52.1  10.1  195   92-311     4-235 (1015)
320 KOG1167 consensus               97.8 0.00018 4.6E-09   53.8   8.9  165   78-313    13-184 (418)
321 pfam06293 Kdo Lipopolysacchari  97.8 0.00012   3E-09   55.2   7.7  121  201-327    54-189 (206)
322 PRK09550 mtnK methylthioribose  97.8 8.3E-05 2.1E-09   56.4   6.7   64  267-333   209-274 (398)
323 KOG0582 consensus               97.8 0.00018 4.7E-09   53.7   8.3  236  124-419    31-284 (516)
324 KOG0032 consensus               97.8 7.3E-05 1.9E-09   56.8   6.0  146  125-314    41-191 (382)
325 cd05155 APH_ChoK_like_1 Unchar  97.7 0.00015 3.9E-09   54.3   7.3  181  131-331     7-209 (235)
326 KOG1163 consensus               97.7 0.00018 4.7E-09   53.7   7.3  136  125-312    21-164 (341)
327 KOG3087 consensus               97.7 0.00024   6E-09   52.9   7.8   98  206-309    58-163 (229)
328 cd05152 MPH2' Macrolide 2'-Pho  97.7   8E-05 2.1E-09   56.5   5.2   64  279-344   183-247 (276)
329 cd05105 PTKc_PDGFR_alpha Catal  97.7 0.00062 1.6E-08   49.7   9.6   51  122-172    40-97  (400)
330 KOG0659 consensus               97.6 0.00017 4.2E-09   54.1   6.1  186  125-361     8-218 (318)
331 KOG4236 consensus               97.6 0.00018 4.5E-09   53.9   6.0  157  106-315   552-720 (888)
332 KOG0597 consensus               97.6 0.00071 1.8E-08   49.2   8.9  223  125-405     8-235 (808)
333 KOG1166 consensus               97.5 0.00011 2.7E-09   55.6   4.1  179  124-361   703-896 (974)
334 KOG0577 consensus               97.5 0.00031 7.9E-09   52.0   6.4  180  112-337    20-207 (948)
335 PTZ00267 NIMA-related protein   97.5  0.0016   4E-08   46.5   9.7   96  219-316   119-223 (478)
336 KOG1164 consensus               97.5 0.00071 1.8E-08   49.2   7.9  138  125-310    24-175 (322)
337 KOG0603 consensus               97.5 0.00032 8.2E-09   51.8   6.0   77  238-315   391-469 (612)
338 KOG0575 consensus               97.5 7.1E-05 1.8E-09   56.9   2.7  134  126-315    25-171 (592)
339 KOG0612 consensus               97.4  0.0011 2.7E-08   47.9   8.1   68  239-313   151-226 (1317)
340 KOG1095 consensus               97.4 0.00067 1.7E-08   49.4   6.9  194  122-387   695-902 (1025)
341 KOG0585 consensus               97.4  0.0023 5.8E-08   45.3   9.6  159  125-315   103-263 (576)
342 PRK12274 serine/threonine prot  97.4  0.0017 4.3E-08   46.3   8.9  120  206-344    29-149 (198)
343 PRK01723 3-deoxy-D-manno-octul  97.4  0.0013 3.3E-08   47.2   8.2  102  223-328   101-212 (240)
344 cd05166 PI3Kc_II Phosphoinosit  97.4  0.0066 1.7E-07   41.7  11.5   29  286-314   207-236 (353)
345 pfam01633 Choline_kinase Choli  97.3  0.0013 3.3E-08   47.2   7.5   34  281-314   141-175 (208)
346 KOG0587 consensus               97.3  0.0003 7.6E-09   52.1   4.0  150  124-319    24-180 (953)
347 COG2334 Putative homoserine ki  97.3 0.00081 2.1E-08   48.8   6.2  171  125-311    32-228 (331)
348 KOG0593 consensus               97.2 0.00098 2.5E-08   48.1   6.2  133  126-314     9-153 (396)
349 KOG0592 consensus               97.2   0.005 1.3E-07   42.7   9.6  243  114-409    70-326 (604)
350 PRK12396 5-methylribose kinase  97.2   0.015 3.9E-07   38.8  12.2   63  268-333   216-280 (409)
351 COG2112 Predicted Ser/Thr prot  97.2  0.0023 5.9E-08   45.2   7.7  139  125-324    28-170 (201)
352 cd05176 PI3Kc_C2_alpha Phospho  97.2   0.014 3.5E-07   39.2  11.5   28  286-313   207-235 (353)
353 KOG0197 consensus               97.2 0.00079   2E-08   48.8   5.0  140  122-313   209-354 (468)
354 KOG0578 consensus               97.1  0.0046 1.2E-07   42.9   8.8  208   89-355   241-456 (550)
355 KOG1094 consensus               97.1 0.00085 2.2E-08   48.6   5.0  202  123-392   542-763 (807)
356 cd00895 PI3Kc_C2_beta Phosphoi  97.1   0.019 4.7E-07   38.2  11.8   28  286-313   208-236 (354)
357 cd05157 ETNK_euk Ethanolamine   97.1  0.0039   1E-07   43.4   8.0  179  126-314     5-204 (235)
358 KOG0663 consensus               97.1  0.0016 4.1E-08   46.4   5.9  143  122-315    77-230 (419)
359 PRK06149 hypothetical protein;  97.1  0.0037 9.4E-08   43.7   7.7  157   95-310    13-242 (972)
360 KOG1187 consensus               97.0 0.00053 1.4E-08   50.2   3.1  183  121-360    75-270 (361)
361 cd00896 PI3Kc_III Phosphoinosi  97.0   0.043 1.1E-06   35.4  12.7   25  285-309   206-230 (350)
362 cd05153 HomoserineK_II Homoser  97.0  0.0036 9.2E-08   43.7   6.9   33  279-311   173-205 (296)
363 KOG4721 consensus               97.0   0.016 4.1E-07   38.7  10.2  235   80-404   102-347 (904)
364 KOG0596 consensus               96.9  0.0039   1E-07   43.4   6.7  163  205-388   406-588 (677)
365 KOG0588 consensus               96.9 0.00073 1.9E-08   49.1   2.7  135  124-310    17-160 (786)
366 cd05177 PI3Kc_C2_gamma Phospho  96.8   0.056 1.4E-06   34.5  11.9   28  286-313   208-236 (354)
367 KOG2269 consensus               96.8   0.034 8.8E-07   36.1  10.8  137  186-347   322-461 (531)
368 KOG0616 consensus               96.8  0.0098 2.5E-07   40.3   7.8  230  120-412    43-283 (355)
369 cd05174 PI3Kc_IA_delta Phospho  96.7   0.048 1.2E-06   35.0  11.3   28  286-313   213-241 (361)
370 KOG0694 consensus               96.7   0.012 3.1E-07   39.6   8.2  250  126-430   375-629 (694)
371 KOG0196 consensus               96.7 0.00057 1.5E-08   49.9   1.2  179   92-315   603-784 (996)
372 KOG0658 consensus               96.6 0.00011 2.7E-09   55.6  -2.9  145  125-318    30-182 (364)
373 cd00891 PI3Kc Phosphoinositide  96.6   0.029 7.5E-07   36.7   9.4   29  285-313   207-236 (352)
374 COG3173 Predicted aminoglycosi  96.6  0.0016   4E-08   46.5   2.8   39  281-319   198-236 (321)
375 KOG0615 consensus               96.6  0.0079   2E-07   41.1   6.3  143  124-313   177-330 (475)
376 KOG0201 consensus               96.5   0.002 5.2E-08   45.7   3.1  154  114-319     9-168 (467)
377 KOG1989 consensus               96.5   0.015 3.7E-07   39.0   7.4  206  124-372    42-260 (738)
378 PRK05231 homoserine kinase; Pr  96.5   0.077   2E-06   33.4  11.1   73  279-372   185-259 (319)
379 KOG0984 consensus               96.4  0.0076 1.9E-07   41.2   5.5  148  125-319    52-206 (282)
380 COG0515 SPS1 Serine/threonine   96.4    0.01 2.6E-07   40.2   5.8  139  126-313     7-153 (384)
381 KOG0668 consensus               96.3   0.021 5.3E-07   37.8   7.1  208  126-419    45-271 (338)
382 cd05167 PI4Kc_III_alpha Phosph  96.2   0.064 1.6E-06   34.0   9.3  128  286-437   165-293 (311)
383 KOG0591 consensus               96.2    0.13 3.3E-06   31.7  14.8  146  124-318    24-184 (375)
384 KOG0598 consensus               96.2   0.019 4.8E-07   38.2   6.5  143  120-311    24-174 (357)
385 cd05156 ChoK_euk Choline Kinas  96.2   0.027 6.9E-07   37.0   7.1  178  127-311     6-213 (302)
386 KOG0589 consensus               96.1   0.043 1.1E-06   35.4   7.8  154  223-386    64-222 (426)
387 KOG4645 consensus               96.1  0.0076 1.9E-07   41.2   4.0   71  239-315  1310-1387(1509)
388 KOG1006 consensus               96.1  0.0068 1.7E-07   41.6   3.7  142  125-316    70-222 (361)
389 TIGR02721 ycfN_thiK thiamine k  96.1  0.0046 1.2E-07   42.9   2.7  147  203-361    37-226 (262)
390 KOG0670 consensus               96.0   0.017 4.3E-07   38.5   5.4   94  223-318   492-593 (752)
391 KOG3653 consensus               95.9    0.08 2.1E-06   33.3   8.6  144  123-314   214-368 (534)
392 KOG0199 consensus               95.9  0.0085 2.2E-07   40.8   3.6  144  125-318   116-268 (1039)
393 COG3001 Uncharacterized protei  95.9    0.04   1E-06   35.6   7.0  185  100-348     1-248 (286)
394 KOG0194 consensus               95.9   0.021 5.3E-07   37.9   5.5  208  125-383   163-376 (474)
395 cd00893 PI4Kc_III Phosphoinosi  95.8   0.097 2.5E-06   32.6   8.5  128  285-437   143-271 (289)
396 KOG2686 consensus               95.7   0.051 1.3E-06   34.8   6.8  204  100-310    19-242 (366)
397 KOG1151 consensus               95.6   0.039 9.9E-07   35.7   6.0   88  222-315   524-626 (775)
398 cd00894 PI3Kc_IB_gamma Phospho  95.6    0.17 4.3E-06   30.8   9.2   24  286-309   217-240 (365)
399 cd05164 PIKKc Phosphoinositide  95.5   0.034 8.7E-07   36.2   5.4   84  224-309    69-160 (222)
400 KOG0906 consensus               95.4    0.26 6.6E-06   29.3  13.0  167  241-454   638-825 (843)
401 KOG1165 consensus               95.4    0.04   1E-06   35.6   5.4  100  215-319    76-187 (449)
402 cd05168 PI4Kc_III_beta Phospho  95.3    0.29 7.5E-06   28.9  10.4   30  285-314   145-174 (293)
403 KOG0983 consensus               95.2   0.042 1.1E-06   35.5   4.9  144  125-317    98-247 (391)
404 COG0510 ycfN Thiamine kinase a  95.0   0.019 4.8E-07   38.1   2.8   34  282-315   154-187 (269)
405 COG5032 TEL1 Phosphatidylinosi  95.0    0.35 8.8E-06   28.4  10.6  155  202-390  1804-2021(2105)
406 smart00146 PI3Kc Phosphoinosit  94.9   0.014 3.7E-07   39.1   2.0   85  224-310    39-130 (202)
407 COG4857 Predicted kinase [Gene  94.7   0.037 9.4E-07   35.9   3.6  131  192-333   140-281 (408)
408 cd05175 PI3Kc_IA_alpha Phospho  94.6   0.024 6.1E-07   37.4   2.5   44  264-314   201-245 (366)
409 KOG2345 consensus               94.6   0.028 7.1E-07   36.8   2.8  104  206-315    66-182 (302)
410 pfam10707 YrbL-PhoP_reg PhoP r  94.5    0.45 1.1E-05   27.5   9.0  157  125-313     7-174 (199)
411 KOG0579 consensus               94.5    0.15 3.9E-06   31.1   6.3   88  227-315    91-183 (1187)
412 KOG0696 consensus               94.5    0.15 3.9E-06   31.1   6.3  230  121-407   349-587 (683)
413 KOG0586 consensus               94.4    0.03 7.6E-07   36.6   2.6  182  123-363    60-250 (596)
414 TIGR01767 MTRK 5-methylthiorib  94.4     0.1 2.6E-06   32.5   5.2  198  110-334    37-248 (386)
415 COG5072 ALK1 Serine/threonine   94.4   0.056 1.4E-06   34.5   3.9  202   97-310   129-369 (488)
416 PRK11768 serine/threonine prot  94.3    0.02 5.1E-07   38.0   1.5  156  135-308    41-222 (326)
417 KOG1035 consensus               94.3    0.08 2.1E-06   33.3   4.6  196  114-312   472-747 (1351)
418 KOG1027 consensus               94.3    0.13 3.2E-06   31.8   5.6  126  183-317   533-666 (903)
419 cd05165 PI3Kc_I Phosphoinositi  94.3    0.03 7.6E-07   36.6   2.4   29  286-314   217-246 (366)
420 KOG0666 consensus               94.3   0.096 2.5E-06   32.7   4.9  187  115-351    19-223 (438)
421 cd05173 PI3Kc_IA_beta Phosphoi  94.0   0.036 9.1E-07   36.0   2.3   38  265-309   199-236 (362)
422 cd00142 PI3Kc_like Phosphoinos  94.0   0.044 1.1E-06   35.3   2.7   83  223-310    65-158 (219)
423 PTZ00296 choline kinase; Provi  93.9    0.59 1.5E-05   26.6   9.3  220   75-312    66-312 (439)
424 KOG0664 consensus               93.8    0.13 3.2E-06   31.7   4.7  175  125-351    59-241 (449)
425 cd00892 PIKKc_ATR ATR (Ataxia   93.4    0.06 1.5E-06   34.3   2.5   27  283-309   141-168 (237)
426 KOG0902 consensus               93.4    0.05 1.3E-06   34.9   2.1  128  286-437  1657-1784(1803)
427 cd05170 PIKKc_SMG1 Suppressor   93.1   0.077   2E-06   33.4   2.8   27  283-309   211-238 (307)
428 pfam00454 PI3_PI4_kinase Phosp  93.1   0.064 1.6E-06   34.0   2.3   27  283-309   134-161 (233)
429 smart00587 CHK ZnF_C4 abd HLH   93.0   0.084 2.1E-06   33.1   2.8   34  283-316   122-160 (196)
430 PRK09902 hypothetical protein;  93.0     0.8   2E-05   25.6   8.0  117  202-337    63-196 (216)
431 cd05172 PIKKc_DNA-PK DNA-depen  92.9   0.076 1.9E-06   33.5   2.5   26  284-309   139-165 (235)
432 cd05171 PIKKc_ATM Ataxia telan  92.8   0.075 1.9E-06   33.5   2.4   26  284-309   184-210 (279)
433 KOG0599 consensus               92.8   0.095 2.4E-06   32.7   2.9  159  117-317    13-178 (411)
434 cd05169 PIKKc_TOR TOR (Target   92.7   0.093 2.4E-06   32.8   2.6   27  283-309   183-210 (280)
435 pfam07914 DUF1679 Protein of u  92.6    0.89 2.3E-05   25.2   9.4  210   98-327    12-317 (413)
436 KOG0903 consensus               92.4   0.078   2E-06   33.4   2.0  123  181-314   580-728 (847)
437 KOG0665 consensus               92.3    0.18 4.5E-06   30.6   3.7  130  223-363    81-212 (369)
438 pfam02958 DUF227 Domain of unk  91.9    0.49 1.3E-05   27.2   5.6   34  283-316   216-254 (293)
439 COG3281 Ble Uncharacterized pr  91.9    0.22 5.5E-06   29.9   3.8   36  265-307   274-309 (438)
440 KOG4717 consensus               91.4     1.2   3E-05   24.2  10.0  146  124-319    23-176 (864)
441 PRK09188 serine/threonine prot  91.0     1.3 3.3E-05   24.0   7.0   99  205-317    68-167 (365)
442 KOG0671 consensus               91.0    0.62 1.6E-05   26.4   5.3  129  208-348   135-290 (415)
443 pfam12260 PIP49_C Pancreatitis  90.6     1.4 3.6E-05   23.7   7.2   85  226-316    26-133 (205)
444 PRK10271 thiK thiamine kinase;  90.5     1.3 3.3E-05   23.9   6.6   40  277-317    73-112 (188)
445 KOG0690 consensus               89.3    0.67 1.7E-05   26.2   4.4   70  239-311   244-317 (516)
446 cd05163 TRRAP TRansformation/t  88.9    0.29 7.3E-06   29.0   2.3   27  283-309   156-183 (253)
447 KOG0576 consensus               88.9    0.44 1.1E-05   27.6   3.2  212  126-387    22-255 (829)
448 TIGR02457 TreS_Cterm trehalose  88.7    0.77   2E-05   25.7   4.3   42  307-348   296-337 (568)
449 KOG0662 consensus               88.3    0.55 1.4E-05   26.8   3.4  134  125-312     8-151 (292)
450 KOG1152 consensus               88.3    0.59 1.5E-05   26.5   3.5  150  120-310   560-718 (772)
451 KOG0200 consensus               88.0    0.61 1.5E-05   26.5   3.4   52  122-173   299-359 (609)
452 KOG0669 consensus               87.6     0.5 1.3E-05   27.2   2.8  141  126-313    24-175 (376)
453 PRK05250 S-adenosylmethionine   85.9     2.6 6.7E-05   21.5   5.9   80  227-311   159-246 (386)
454 COG2187 Uncharacterized protei  85.9    0.43 1.1E-05   27.6   1.7  111  199-317   123-241 (337)
455 KOG2052 consensus               85.4     2.2 5.7E-05   22.1   5.2  143  125-316   217-370 (513)
456 KOG0580 consensus               85.0    0.58 1.5E-05   26.6   2.0  151  120-321    21-183 (281)
457 KOG0590 consensus               84.4    0.95 2.4E-05   25.0   2.9   64  242-312   400-470 (601)
458 TIGR02172 Fb_sc_TIGR02172 Fibr  83.9    0.77   2E-05   25.7   2.3  159  146-328    23-206 (234)
459 TIGR00938 thrB_alt homoserine   83.7     3.3 8.3E-05   20.8   6.4   76  279-374   189-266 (312)
460 KOG0904 consensus               83.4    0.86 2.2E-05   25.3   2.3   24  286-309   928-951 (1076)
461 KOG4279 consensus               83.3     3.4 8.6E-05   20.7   6.4   71  239-312   648-726 (1226)
462 COG3178 Predicted phosphotrans  83.1     3.4 8.8E-05   20.6   9.3   71  245-322   171-247 (351)
463 KOG1025 consensus               81.6     3.1 7.9E-05   21.0   4.6  203  124-388   701-918 (1177)
464 KOG0604 consensus               81.5     3.5 8.9E-05   20.6   4.9   72  239-313   135-215 (400)
465 PRK10593 hypothetical protein;  81.5       2 5.1E-05   22.5   3.6  128  206-367    55-191 (297)
466 KOG0033 consensus               79.5     4.5 0.00011   19.7   7.8   95  206-313    58-164 (355)
467 PHA00451 protein kinase         78.4     1.2 3.1E-05   24.1   1.7  177  100-306     2-214 (364)
468 PRK02946 aceK bifunctional iso  77.5     3.3 8.4E-05   20.8   3.7   35  276-310   452-486 (580)
469 KOG0606 consensus               76.7     5.3 0.00014   19.2   5.4  201   76-343    14-217 (1205)
470 KOG0614 consensus               76.6     5.4 0.00014   19.1   5.3   88  213-316   483-574 (732)
471 PRK00029 hypothetical protein;  76.3     5.5 0.00014   19.1   7.3  130  264-408   227-378 (487)
472 KOG4278 consensus               74.5     3.9 9.9E-05   20.2   3.4  123  178-313   283-416 (1157)
473 PRK10345 hypothetical protein;  74.4       6 0.00015   18.7   8.9   93  222-314    58-162 (210)
474 TIGR01212 TIGR01212 radical SA  74.3     2.1 5.3E-05   22.3   2.0  168   53-245    95-278 (307)
475 pfam04655 APH_6_hur Aminoglyco  74.3     1.1 2.8E-05   24.5   0.5   33  124-159     7-39  (253)
476 pfam06315 AceK Isocitrate dehy  73.3     4.5 0.00012   19.7   3.5   41  274-314   438-478 (562)
477 KOG1033 consensus               72.0     1.1 2.9E-05   24.3   0.2   74  240-316   333-410 (516)
478 KOG4257 consensus               71.8     6.9 0.00018   18.3   5.4  141  125-315   395-544 (974)
479 cd05124 AFK Actin-Fragmin Kina  70.2     4.5 0.00012   19.7   2.9  148  147-320    23-195 (238)
480 KOG0695 consensus               70.1     7.5 0.00019   18.0   5.4  157  237-411   325-494 (593)
481 PTZ00104 S-adenosylmethionine   69.9     7.5 0.00019   18.0   4.6  138  148-311    95-254 (391)
482 TIGR00421 ubiX_pad polyprenyl   69.6     3.1 7.8E-05   21.0   2.0   56   71-133    11-75  (181)
483 KOG0905 consensus               68.2     8.1 0.00021   17.8  10.5   24  285-308  1200-1223(1639)
484 COG4248 Uncharacterized protei  67.8     8.2 0.00021   17.7   4.5   15  330-344   447-461 (637)
485 cd01085 APP X-Prolyl Aminopept  67.6     7.8  0.0002   17.9   3.7   36  291-327    75-124 (224)
486 cd04237 AAK_NAGS-ABP AAK_NAGS-  66.6     8.5 0.00022   17.6   3.7   91  233-324    64-158 (280)
487 PTZ00303 phosphatidylinositol   66.6     8.7 0.00022   17.5   4.3   32  278-309  1142-1173(1374)
488 KOG0986 consensus               65.1     9.2 0.00024   17.3   6.8  104  206-316   233-341 (591)
489 PRK09566 nirA ferredoxin-nitri  65.0     1.3 3.4E-05   23.8  -0.6   22   73-94     99-125 (513)
490 KOG4720 consensus               65.0     9.3 0.00024   17.3   5.1  114  283-423   250-369 (391)
491 pfam05542 DUF760 Protein of un  64.8     6.1 0.00016   18.7   2.7   27   70-96      9-35  (328)
492 PRK13028 tryptophan synthase s  62.3     8.8 0.00023   17.5   3.1   78   52-141    23-108 (403)
493 PRK12459 S-adenosylmethionine   62.1      10 0.00026   16.9   4.9   80  227-311   158-245 (383)
494 COG1561 Uncharacterized stress  62.1     8.9 0.00023   17.4   3.1   14  313-326    81-94  (290)
495 COG4579 Isocitrate dehydrogena  62.0     3.7 9.4E-05   20.4   1.1   16   70-85     43-58  (578)
496 pfam11517 Nab2 Nuclear abundan  61.8     9.2 0.00023   17.3   3.1   42   83-124    48-94  (107)
497 KOG2464 consensus               60.7     4.7 0.00012   19.6   1.5   20  280-299   156-175 (246)
498 TIGR01186 proV glycine betaine  60.0     9.2 0.00023   17.3   2.9   41   69-109   140-199 (372)
499 COG3570 StrB Streptomycin 6-ki  58.0      12 0.00031   16.4   5.7   53  269-321   149-202 (274)
500 pfam07387 Seadorna_VP7 Seadorn  57.8     6.5 0.00017   18.5   1.8   27  282-308   163-189 (308)

No 1  
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=100.00  E-value=0  Score=1014.54  Aligned_cols=508  Identities=35%  Similarity=0.555  Sum_probs=472.9

Q ss_pred             CHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCC
Q ss_conf             91489899999999961579865531331267888775320023465556807899999996042899999999710045
Q gi|254780623|r    1 MKEYYELFRIAWILIREGVIVSLPSDRLPPIIVFGKKIASLFVRRNIKKCQRSDRLARAMNRLGPSYVKMGQFLATRPDL   80 (517)
Q Consensus         1 ~~~~~R~~~i~~v~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlr~~le~LGptfiKlGQ~lstR~Dl   80 (517)
                      |+++.|+.+|++|++|||+++++....+.+....+.+...+. .......++|+|+|.|||+|||||||+||+||||+|+
T Consensus         1 m~~l~R~~~I~~vl~ryG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~RlR~alEeLGPtfIKlGQ~LStR~Dl   79 (540)
T PRK04750          1 MGELLRLYKIIRVFLRYGLDELILSMRLTRPLRLLRRSLFWM-SNRHKDKPRGERLRLALQELGPIFVKFGQMLSTRRDL   79 (540)
T ss_pred             CCCHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCC
T ss_conf             951079999999999938498987456404688888741354-2244579989999999999786999999999806644


Q ss_pred             CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHH
Q ss_conf             98899999998874887899899999875404788999999867-66677888865555021288872368764031046
Q gi|254780623|r   81 IGKKLSEDLALLQDKMDFFPTNTARLSVASALKAPIEELYCEFD-DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVR  159 (517)
Q Consensus        81 lp~~~~~eL~~Lqd~vpp~~~~~v~~~ie~elg~~~~~~F~~fd-ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~  159 (517)
                      +|++||+||++|||+|||+||+++++++|+|||.+++++|++|| +|+|||||||||+|+|+|  +|++||||||||||+
T Consensus        80 lP~~~~~eL~~LqD~vpp~~~~~~~~~ie~elG~~~~~~F~~fd~~PiAsASIaQVH~A~L~d--~G~~VaVKVqRP~I~  157 (540)
T PRK04750         80 FPPDIADELALLQDRVPPFDGALARAIIEKALGGPVEEWFDDFDIEPLASASIAQVHTARLKD--NGREVVVKVLRPDIL  157 (540)
T ss_pred             CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHCCHHEEEEEECC--CCCEEEEEEECCCHH
T ss_conf             899999999997379999998999999999869799999770697602211141147889658--981899988788879


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCE
Q ss_conf             88777788999875321146854334691799999998878886559999889872024467766430000102217833
Q gi|254780623|r  160 KRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDV  239 (517)
Q Consensus       160 ~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~V  239 (517)
                      +.|+.|+++|++++++++++.|.++.+++.++++||++++.+|+||++||+|+++|++||++++.++||+|||+|||++|
T Consensus       158 ~~I~~DL~ll~~la~~~~~~~~~~~~~~~~~vv~ef~~~l~~ELDf~~EA~N~~~f~~nf~~~~~v~vP~vy~~~st~rV  237 (540)
T PRK04750        158 PVIDADLALMRRLARWVERLLPDGRRLKPREVVAEFEKTLHDELDLMREAANASQLRRNFEDSDLLYVPEVYWDYCSETV  237 (540)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHCCCCE
T ss_conf             99988999999999988861940300686999999999999998699999999999997279999897974587457861


Q ss_pred             EEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECC----CCEEEEECCHHEECCHH
Q ss_conf             53002478632426773320022568999999999998974486617878622898028----95357434031216989
Q gi|254780623|r  240 ITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSK----GYIVAVDMGITGRLSKR  315 (517)
Q Consensus       240 LvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~d----g~i~~lDfG~vg~l~~~  315 (517)
                      |||||++|+|++|.+.+++.|+|++++|++++++|++|+|+|||||||||||||+|++|    |++++|||||||+|+++
T Consensus       238 LvME~i~Gi~i~d~~~l~~~g~d~~~lA~~~~~~f~~Qvf~dGFFHADpHPGNi~v~~d~~~~g~~~~lDfGmvG~L~~~  317 (540)
T PRK04750        238 LVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQVFRDGFFHADMHPGNIFVSYDHPENPRYIALDFGIVGSLNKE  317 (540)
T ss_pred             EEEEEECCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCHHEEECCCCCCCCCEEEEEEEEECCCCHH
T ss_conf             25630068655549999755998999999999999633400886606999510364577777874788740132138999


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCH
Q ss_conf             99999976699971872789999998412667789368999999852100133433311356899999754527971288
Q gi|254780623|r  316 ERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRAIGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRP  395 (517)
Q Consensus       316 ~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~  395 (517)
                      +|+.+++++.|+.++|+++++++++++|++++++|.+.|+.+++.++++|++.+++++++++++.++++++++|++++|+
T Consensus       318 ~r~~l~~l~~a~~~~D~~~va~~~~~~g~v~~~~~~~~l~~~i~~~~~~~~~~~l~~i~~g~~l~~l~~~~r~~~i~~p~  397 (540)
T PRK04750        318 DKRYLAENFLAFFNRDYRRVAELHVESGWVPPDTRVEELEFAIRAVCEPIFDKPLKEISFGHVLLRLFNTARRFNVEIQP  397 (540)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHCCCCCCH
T ss_conf             99999999999994059999999999589998888799999999999986089887581999999999999988963682


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999999884998768898889999999999998645968899999999999999999766779999999999861
Q gi|254780623|r  396 ELVMLQKTMVVVEGVARMLNPEFNMWVSSEPIVEEWIRDHLGAKSCVVDFQDGIKTAFRLVQAAPQLSISVEKILKSLVE  475 (517)
Q Consensus       396 ~~~ll~r~l~~lEG~~~~LdP~~d~~~~~~p~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~lp~lp~~l~~il~~~~~  475 (517)
                      ++++++||++++||++++|||+||+|++++||+++|++++++|++..+++.+.+.++.+.+..+|   .++.+++++...
T Consensus       398 ~l~ll~Kal~~lEG~~r~LdP~~dl~~~a~P~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~lP---~~l~~~L~~~~~  474 (540)
T PRK04750        398 QLVLLQKTLLNVEGLGRQLDPQLDLWKTAKPFLERWMREQVGPRALVRALKEEAPFWAEKLPELP---RLVHDSLRQGKL  474 (540)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_conf             78999999999998998848999879999999999999867999999999999999999999869---999999984200


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5113666433378999999999999999999999999875
Q gi|254780623|r  476 SSVKDKYLDFPKKESSRVYDFLNKLVLWSIFGALLYIISI  515 (517)
Q Consensus       476 g~l~~~~~~~~~~~~~rl~~~~~rl~l~ii~aalii~ssl  515 (517)
                      ++..+....... ..+++.+..|+++++++.++++.++.+
T Consensus       475 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~~~  513 (540)
T PRK04750        475 LQHSVDKLAEQL-RTNRLQQGQSRYLLGVGATLLLAGVLL  513 (540)
T ss_pred             CCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             041265788878-999999999899999999999999999


No 2  
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase; InterPro: IPR010232   This entry represents the enzyme (UbiB) which catalyses the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria , . The gene is also known as AarF in certain species. It is believed that the reaction converts 2-polyprenylphenol to 6-hydroxy-2-polyprenylphenol. Members are mainly proteobacteria.; GO: 0006744 ubiquinone biosynthetic process.
Probab=100.00  E-value=0  Score=1029.68  Aligned_cols=437  Identities=50%  Similarity=0.830  Sum_probs=419.1

Q ss_pred             HHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC-CCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC
Q ss_conf             898999999999615798655313312678887753200234655-5680789999999604289999999971004598
Q gi|254780623|r    4 YYELFRIAWILIREGVIVSLPSDRLPPIIVFGKKIASLFVRRNIK-KCQRSDRLARAMNRLGPSYVKMGQFLATRPDLIG   82 (517)
Q Consensus         4 ~~R~~~i~~v~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~rlr~~le~LGptfiKlGQ~lstR~Dllp   82 (517)
                      ++||.+|++||+|||++..++. ..+.......+....+.+.+.. ..+.++|||.|||+|||||||+||+||||+||+|
T Consensus         1 ~~RL~~I~~vl~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~RLr~ALe~LGP~fIKfGQ~LSTR~Dl~p   79 (452)
T TIGR01982         1 LKRLIRIIRVLIRYGFLALVES-IGPLSLRLLRRLLLPVSNREARARMSRGERLRLALEELGPTFIKFGQTLSTRADLLP   79 (452)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCEEEHHCCHHHHHCCCCC
T ss_conf             9148999999998423554200-103789988666433331202362334348999998508501303144752203564


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHH------HCCC-CHHHHHHHHHH-HHHHHHHHHHHHHHEECCCCCCEEEEEEE
Q ss_conf             8999999988748878998999998754------0478-89999998676-66778888655550212888723687640
Q gi|254780623|r   83 KKLSEDLALLQDKMDFFPTNTARLSVAS------ALKA-PIEELYCEFDD-PIAAASIAQVHPAVVHDINGYRKVAVKII  154 (517)
Q Consensus        83 ~~~~~eL~~Lqd~vpp~~~~~v~~~ie~------elg~-~~~~~F~~fde-PlasASiaQVh~A~l~d~~~g~~VaVKV~  154 (517)
                      +|+++||++|||+|||+|++.++++||+      +||. |.+..|++||| |||||||||||+|+|++|.++++|||||+
T Consensus        80 ~~~a~eL~~LQD~vPpF~~~~~r~~Ie~lrdiyv~LG~~p~~~~F~~F~e~P~AaASIAQVH~A~l~~G~~r~~VaVKVl  159 (452)
T TIGR01982        80 AEIAEELSLLQDKVPPFDFKAARKVIEALRDIYVALGREPVEELFAEFDEKPLAAASIAQVHKARLVDGATRKEVAVKVL  159 (452)
T ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHCCEEEEECCCCCCCEEEEEEE
T ss_conf             56999999860326899888999999999999998388804677530378426663043020325222897455789876


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH
Q ss_conf             31046887777889998753211468543346917999999988788865599998898720244677664300001022
Q gi|254780623|r  155 RPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR  234 (517)
Q Consensus       155 rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~  234 (517)
                      ||||++.|++|+++|+++|++++++.|.+++++|.++|++|.+++..||||+.||+|++++++||+++++++||+|||+|
T Consensus       160 RP~i~~~i~~D~~~L~~~A~~ve~~~~~~~RlrP~evV~~f~~~l~~ELDl~~Eaa~A~~L~~Nf~~d~~~~vP~V~W~~  239 (452)
T TIGR01982       160 RPGIEKKIEADIKLLYRLARIVERLLPDSRRLRPTEVVKEFEKTLRNELDLRREAANASELGENFKNDPGLYVPEVYWDY  239 (452)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             59818999999999999999987425112554603678899999998764999999999999987407870874575585


Q ss_pred             CCCCEEEEECCCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECC----CCEEEEECCHH
Q ss_conf             17833530024786324267733200-22568999999999998974486617878622898028----95357434031
Q gi|254780623|r  235 TERDVITMEWIDGVKISDTEKLRACG-HDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSK----GYIVAVDMGIT  309 (517)
Q Consensus       235 st~~VLvmE~i~G~~i~d~~~l~~~~-~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~d----g~i~~lDfG~v  309 (517)
                      ||++|||||||||+|++|++.+++.| +|+++||++++.+||+|+|.|||||||||||||||+.|    |+|++||||||
T Consensus       240 Ts~~vlTmEwIdGip~~D~~~L~~~G~~D~~~lA~~~~~sF~~Qv~rDGfFHAD~HpGNI~v~~d~~~Ng~i~~~DFGIV  319 (452)
T TIGR01982       240 TSERVLTMEWIDGIPLSDIAALDEAGLLDLKALAENLVRSFLNQVLRDGFFHADLHPGNIFVLKDPERNGKIIALDFGIV  319 (452)
T ss_pred             CCCCCCEEHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
T ss_conf             76532100103552533589996468978889999999999999997158878847566332478776880899853742


Q ss_pred             EECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHC
Q ss_conf             21698999999976699971872789999998412667789368999999852100133433311356899999754527
Q gi|254780623|r  310 GRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRAIGEPIHGQSSDVISMGKLLTMLFEITELF  389 (517)
Q Consensus       310 g~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  389 (517)
                      |+|+++.|+.++++++|++++||+++++.+.++|+++.++|.+.|+++++.+.++|+|.|++++|+|+++.++|+++++|
T Consensus       320 G~l~~~~r~~LAE~l~Gf~~rDY~~VA~~H~~aGyvp~~~d~~~f~~a~R~~~EP~~g~Pl~~IS~g~~L~~LF~~t~~f  399 (452)
T TIGR01982       320 GRLSEEDRRYLAEILYGFINRDYRRVAEVHFDAGYVPSDTDMAEFEQAIRAIGEPIFGQPLKEISVGKLLAKLFKITRDF  399 (452)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHC
T ss_conf             00137889999999999985429999999986258884356999999862001543366677402899999999999870


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf             9712888999999999988499876889888999999999999864596889
Q gi|254780623|r  390 DMMTRPELVMLQKTMVVVEGVARMLNPEFNMWVSSEPIVEEWIRDHLGAKSC  441 (517)
Q Consensus       390 ~~~~P~~~~ll~r~l~~lEG~~~~LdP~~d~~~~~~p~~~~~l~~~~~p~~~  441 (517)
                      ++.+||+|+||+|||+|+||+||+|||++|+|++|+||+++|+.++++|+..
T Consensus       400 ~m~~qP~L~LLqKTl~~vEGvgR~LdP~~~~W~~A~P~v~~w~~~~~gp~~~  451 (452)
T TIGR01982       400 NMEVQPQLLLLQKTLLTVEGVGRQLDPDLNLWKVAEPFVKKWIRKRLGPKAK  451 (452)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             7856815899999876452102450888788899899999998732670104


No 3  
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=100.00  E-value=0  Score=892.50  Aligned_cols=463  Identities=41%  Similarity=0.682  Sum_probs=428.3

Q ss_pred             HHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHH-H-HHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCC
Q ss_conf             1489899999999961579865531331267888775-3-2002346555680789999999604289999999971004
Q gi|254780623|r    2 KEYYELFRIAWILIREGVIVSLPSDRLPPIIVFGKKI-A-SLFVRRNIKKCQRSDRLARAMNRLGPSYVKMGQFLATRPD   79 (517)
Q Consensus         2 ~~~~R~~~i~~v~~r~g~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~rlr~~le~LGptfiKlGQ~lstR~D   79 (517)
                      ....|+.++.++..++++...++.............. . ...........++++|||.+|++|||||||+||+||||||
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rL~~~L~~LGptfIK~GQ~LStR~D   84 (517)
T COG0661           5 YAVSRLPRIIRVRLRYLLGRLLRLTGRLALLLRLLSWLGKSKLASSEELREKRAERLRLALEELGPTFIKLGQILSTRPD   84 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHCCC
T ss_conf             56564022013354888888888888888777788872232446478887768999999999819820113168760763


Q ss_pred             CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHH
Q ss_conf             598899999998874887899899999875404788999999867-6667788886555502128887236876403104
Q gi|254780623|r   80 LIGKKLSEDLALLQDKMDFFPTNTARLSVASALKAPIEELYCEFD-DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGV  158 (517)
Q Consensus        80 llp~~~~~eL~~Lqd~vpp~~~~~v~~~ie~elg~~~~~~F~~fd-ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i  158 (517)
                      ++|++|++||++|||+|||+|++++++++++|||.+++++|++|+ +|+|||||||||+|+|++   |++||||||||||
T Consensus        85 l~p~e~~~eL~~LQD~vpp~~~~~~~~iie~eLG~~iee~F~eF~~~PiAsASIaQVH~A~L~s---G~~VAVKVqrPgi  161 (517)
T COG0661          85 LVPPEYAEELAKLQDRVPPFPFEEAERIIEEELGRPIEELFSEFEPEPIASASIAQVHRAVLKS---GEEVAVKVQRPGI  161 (517)
T ss_pred             CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHEEEEECC---CCEEEEEECCCCH
T ss_conf             2789999999997378999998999999999949999999987499705441276603478458---9889999448981


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC
Q ss_conf             68877778899987532114685433469179999999887888655999988987202446776643000010221783
Q gi|254780623|r  159 RKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD  238 (517)
Q Consensus       159 ~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~  238 (517)
                      ++.|..|+.+|++++++++++.|.++++++.++++||.+.+..|+||++||+|+++|++||++++.|+||+|||+|||++
T Consensus       162 ~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~~EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~  241 (517)
T COG0661         162 RERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYRREAANAERFRENFKDDPDVYVPKVYWEYTTRR  241 (517)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCEEECEEEHHCCCCC
T ss_conf             88899999999999999987398553278699999999999999677999999999999708999868062523005785


Q ss_pred             EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHH
Q ss_conf             35300247863242677332002256899999999999897448661787862289802895357434031216989999
Q gi|254780623|r  239 VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERR  318 (517)
Q Consensus       239 VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~  318 (517)
                      ||||||++|+|++|.+.+++.|.|++.+++.++++|++|+|+|||||||||||||+|+++|+++++||||||++++.+|.
T Consensus       242 VLtmE~i~Gi~i~d~~~l~~~g~d~k~ia~~~~~~f~~q~~~dgffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~~~~r~  321 (517)
T COG0661         242 VLTMEWIDGIKISDIAALKSAGIDRKELAELLVRAFLRQLLRDGFFHADPHPGNILVRSDGRIVLLDFGIVGRLDPKFRR  321 (517)
T ss_pred             EEEEEEECCEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEECCCCEECCCHHHHH
T ss_conf             78997158974346877875599999999999999999999659513599950057715896899757530138878999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             99976699971872789999998412667789368999999852100133433311356899999754527971288899
Q gi|254780623|r  319 FLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRAIGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELV  398 (517)
Q Consensus       319 ~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~~~  398 (517)
                      .+++++.|+.++|++++++.+.++|++++.+|...+..+++.+++++++.++++++++++...++++++++++++|++++
T Consensus       322 ~l~~~~~a~~~rD~~~v~~~~~~~G~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~p~~l~  401 (517)
T COG0661         322 YLAELLLAFLNRDYDRVAELHVELGYVPPDTDRDPLAAAIRAVLEPIYGKPLEEISFGEILDKLFEVARRFPMRLPPELV  401 (517)
T ss_pred             HHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf             99999999984079999999999479997555689999999998764089955435999999999999864765889999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999988499876889888999999999999864596889999999999999999976677999999
Q gi|254780623|r  399 MLQKTMVVVEGVARMLNPEFNMWVSSEPIVEEWIRDHLGAKSCVVDFQDGIKTAFRLVQAAPQLSISVEK  468 (517)
Q Consensus       399 ll~r~l~~lEG~~~~LdP~~d~~~~~~p~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~lp~lp~~l~~  468 (517)
                      +++|+++++||+++.|||++|+|.++.||+.++...+++|+ ....+.+....+......+|++...+.+
T Consensus       402 ll~r~~~~vEg~~~~ldp~~~~~~~a~p~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~l~~~~~~~~~  470 (517)
T COG0661         402 LLQRTLLLVEGVGRQLDPRFNLWAVAQPLLAKWLKKQLSPK-LLRELKDEAVAVLNALPLLPRLLRDLLD  470 (517)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99988998999987637441179996188899998741399-9999987589999988762888998776


No 4  
>KOG1235 consensus
Probab=100.00  E-value=0  Score=657.89  Aligned_cols=366  Identities=29%  Similarity=0.440  Sum_probs=318.8

Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHH
Q ss_conf             789999999604289999999971004598899999998874887899899999875404788999999867-6667788
Q gi|254780623|r   53 SDRLARAMNRLGPSYVKMGQFLATRPDLIGKKLSEDLALLQDKMDFFPTNTARLSVASALKAPIEELYCEFD-DPIAAAS  131 (517)
Q Consensus        53 ~~rlr~~le~LGptfiKlGQ~lstR~Dllp~~~~~eL~~Lqd~vpp~~~~~v~~~ie~elg~~~~~~F~~fd-ePlasAS  131 (517)
                      +++|+..++.+||||||+||.+|||+|++|+||+++|+.|||++||+||+++.+++|+|||.|++++|++|| +||||||
T Consensus        94 a~~L~e~~~~nGg~yIKlGQ~lst~~dllP~Eyv~~L~~LqD~~Pp~~~ee~~~i~e~ElG~~ie~if~~f~~~piaaAS  173 (538)
T KOG1235          94 AERLLELFLRNGGTYIKLGQHLSTRPDLLPKEYVKTLSELQDQAPPFPWEEAFKIFEEELGAPIEDIFSEFDEEPIAAAS  173 (538)
T ss_pred             HHHHHHHHHHCCCEEEEECHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHCC
T ss_conf             99999999970886998220330365437199999999985069999879999999988399989998852854132242


Q ss_pred             HHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88655550212888723687640310468877778899987532114685433469179999999887888655999988
Q gi|254780623|r  132 IAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAA  211 (517)
Q Consensus       132 iaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n  211 (517)
                      +||||+|+|++   |++|||||||||+++.+..|+.+++.++.+++++.|.   +++..+++|++..+.+|+||.+||+|
T Consensus       174 laQVhrA~L~~---G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~---~~~~~lvdE~~~~L~~ELDF~~EA~N  247 (538)
T KOG1235         174 LAQVHRARLKN---GEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPD---FDLVWLVDEIAKSLPQELDFTKEAKN  247 (538)
T ss_pred             HHHEEEEEECC---CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             43467788259---9889999548676778899999999999999986867---72165899998656765366888876


Q ss_pred             HHHHHCCCCCCC---CCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCC
Q ss_conf             987202446776---64300001022178335300247863242677332002256899999999999897448661787
Q gi|254780623|r  212 FSEMAENTVKDQ---GFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADL  288 (517)
Q Consensus       212 ~~~~~~~~~~~~---~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFHaDP  288 (517)
                      +++|+++|++.+   +|+||+|||+|||+|||||||++|++++|++.+++.|++++.++..++++|.+|||.+|||||||
T Consensus       248 ae~~~~~f~~~~~~~~V~VP~Vy~~~st~RVLtME~~~G~~i~Dl~~i~~~gi~~~~i~~~l~~~~~~qIf~~GffHaDP  327 (538)
T KOG1235         248 AERFRENFKDFSLLTYVLVPKVYWDLSTKRVLTMEYVDGIKINDLDAIDKRGISPHDILNKLVEAYLEQIFKTGFFHADP  327 (538)
T ss_pred             HHHHHHHHHHCCCCCCEECCEEHHHCCCCEEEEEEECCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             99999998744656602677443323756379998308805788999987499989999999999999998539715799


Q ss_pred             CCCEEEEEC----CCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH--
Q ss_conf             862289802----89535743403121698999999976699971872789999998412667789368999999852--
Q gi|254780623|r  289 HPGNLFVDS----KGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRAIG--  362 (517)
Q Consensus       289 HpGNi~v~~----dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i~~~~--  362 (517)
                      |||||+|++    +++++++|||+++.++...|..++++++|++..|...+......+|..+ +.+...|..++...-  
T Consensus       328 HPGNilv~~~~~~~~~ivllDhGl~~~is~~~r~~~~~~~~a~~~~d~~~~~~~~~~~g~~~-d~~~~~fa~~l~~~~~~  406 (538)
T KOG1235         328 HPGNILVRPNPEGDEEIVLLDHGLYAVISHKTRKDYAELWLALVFEDEKAMQALAEQLGLGL-DDLYPLFATALTGRPWD  406 (538)
T ss_pred             CCCCEEEECCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC-CHHHHHHHHHHHCCCHH
T ss_conf             98737871278998548998344513466777999999999986052789999999754363-01234567887187255


Q ss_pred             -------HHCCCCCH-----HHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC----HHHHHHH
Q ss_conf             -------10013343-----3311356899999754527971288899999999998849987688988----8999999
Q gi|254780623|r  363 -------EPIHGQSS-----DVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVARMLNPEFN----MWVSSEP  426 (517)
Q Consensus       363 -------~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~P~~~~ll~r~l~~lEG~~~~LdP~~d----~~~~~~p  426 (517)
                             ..+.....     ........+..+.+...+    +|.++.++.|+..++.++-..+.-..+    +...++.
T Consensus       407 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~----~p~~i~li~k~~~l~r~~~~~l~~~~~~~~~f~~~~~~  482 (538)
T KOG1235         407 SVIGAGITKYLKGLEEDADENQKIASAKFPGISQLLRR----MPREILLILKTNDLLRGLSSNLGIPSSLERSFLEMARL  482 (538)
T ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             41563213330013100016778899875689999874----64766331132788886788746665521689999898


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780623|r  427 IVE  429 (517)
Q Consensus       427 ~~~  429 (517)
                      .++
T Consensus       483 ~~~  485 (538)
T KOG1235         483 CLR  485 (538)
T ss_pred             HHH
T ss_conf             888


No 5  
>KOG1236 consensus
Probab=100.00  E-value=0  Score=527.85  Aligned_cols=376  Identities=22%  Similarity=0.360  Sum_probs=348.6

Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC-CHHHHHHHHH-HHHHHH
Q ss_conf             78999999960428999999997100459889999999887488789989999987540478-8999999867-666778
Q gi|254780623|r   53 SDRLARAMNRLGPSYVKMGQFLATRPDLIGKKLSEDLALLQDKMDFFPTNTARLSVASALKA-PIEELYCEFD-DPIAAA  130 (517)
Q Consensus        53 ~~rlr~~le~LGptfiKlGQ~lstR~Dllp~~~~~eL~~Lqd~vpp~~~~~v~~~ie~elg~-~~~~~F~~fd-ePlasA  130 (517)
                      .+-|+.++|.-||||||||||.|||+|+||+++|.+|++|+.+|+|+||...++.+++++|. .++++|.+|+ +|+|||
T Consensus       121 ~~~L~kaLE~aGPtFIKLGQWAsTR~DlFs~afC~qLSKLHs~vt~Hs~a~T~k~l~qa~~~~~~~eiF~efn~~PIGsG  200 (565)
T KOG1236         121 LRLLLKALETAGPTFIKLGQWASTRRDLFSKAFCAQLSKLHSNVTPHSFAFTKKKLRQAFGVKKIEEIFSEFNREPIGSG  200 (565)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCC
T ss_conf             99999999752986687142002264316799999988875058987317789999999774748999873487655654


Q ss_pred             HHHHHHHHHEEC-------------CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             888655550212-------------8887236876403104688777788999875321146854334691799999998
Q gi|254780623|r  131 SIAQVHPAVVHD-------------INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ  197 (517)
Q Consensus       131 SiaQVh~A~l~d-------------~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~  197 (517)
                      ||||||+|+++.             +.+-++|||||.+|++++.|+.|+.+|...|+..+ ++|+..+++++..+++|..
T Consensus       201 ~IAQVY~atl~~a~lekd~~~~~~~~~~tq~~AiKv~Hp~V~~~ir~Dl~Il~f~Akl~~-~vP~l~wL~l~~~vkqF~v  279 (565)
T KOG1236         201 CIAQVYRATLKTAYLEKDSGKEYVQKLGTQSCAIKVLHPNVEKQIRLDLGILGFGAKLIN-NVPDLSWLSLPLEVKQFSV  279 (565)
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCHHHHHHH
T ss_conf             133455555418876313440231477653155411075678889999999852144555-4676311167205889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCC-CHHHHHHHHHHHHHH
Q ss_conf             8788865599998898720244677664300001022178335300247863242677332002-256899999999999
Q gi|254780623|r  198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGH-DLERLSVTLVQSFLL  276 (517)
Q Consensus       198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~-d~~~la~~l~~~~~~  276 (517)
                      .+..++|+++||.|+.+|..||+++.+|.+|++|..++|+.||+.+|++|.++...-.-+.... -.+++|..+++++++
T Consensus       280 ~ln~QvdL~~EA~hL~rF~~NF~~s~~V~fP~P~~~~~~~~vl~E~~~~Gl~v~~~v~~~~~pe~l~kkva~lg~~Allk  359 (565)
T KOG1236         280 GLNAQVDLRQEALHLPRFTNNFSGSKKVLFPKPIAPLHTDLVLVETYERGLSVLRFVKWKSQPEALVKKVAKLGVNALLK  359 (565)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             98741006554431588987513535524776532134443122102455207765422227699999999877999999


Q ss_pred             HHHHCCEECCCCCCCEEEEEC--C-----------------------------------------CCEEEEECCHHEECC
Q ss_conf             897448661787862289802--8-----------------------------------------953574340312169
Q gi|254780623|r  277 HTLRDGFFHADLHPGNLFVDS--K-----------------------------------------GYIVAVDMGITGRLS  313 (517)
Q Consensus       277 qi~~~GfFHaDPHpGNi~v~~--d-----------------------------------------g~i~~lDfG~vg~l~  313 (517)
                      |++.|+|.|||.||||++|..  .                                         +++||+|-|++..++
T Consensus       360 Ml~vDNFvHaDlHPGNVlirf~~t~~~~~~~~~~e~~~~i~~~L~~~~~e~~d~~~~~~~~~~~~P~lvflDtGiv~kLs  439 (565)
T KOG1236         360 MLIVDNFVHADLHPGNVLIRFNKTEDNLRGVHKAEKASAIKRGLEWFRSEVRDARFTDSPDLEYEPTLVFLDTGIVTKLS  439 (565)
T ss_pred             HHHHHCCEECCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHCCC
T ss_conf             99860001124577747998547875433332203566776435654556653332126534688749995230544047


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC-CCCHHHCCHHHHHHHHHHHHHHCCCC
Q ss_conf             89999999766999718727899999984126677893689999998521001-33433311356899999754527971
Q gi|254780623|r  314 KRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRAIGEPIH-GQSSDVISMGKLLTMLFEITELFDMM  392 (517)
Q Consensus       314 ~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~  392 (517)
                      +..+.++..+|.|+++.|++.+.+.+++.+-.....|.+.|...++.++.... ..+++..+++.++.+++.+++.|+++
T Consensus       440 ~qn~~N~l~lF~av~~~~Gy~ag~lml~~Sr~q~~~d~e~F~~kvEklv~~~~st~sl~tl~i~~ll~em~tmvreH~V~  519 (565)
T KOG1236         440 HQNQMNLLSLFRAVARFDGYDAGELMLERSRQQQCIDPERFARKVEKLVLKARSTKSLRTLNIGDLLSEMFTMVREHHVR  519 (565)
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHEE
T ss_conf             14188799999999875152188999764501048988999999999999864204467476899999999999875242


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             2888999999999988499876889888999999999
Q gi|254780623|r  393 TRPELVMLQKTMVVVEGVARMLNPEFNMWVSSEPIVE  429 (517)
Q Consensus       393 ~P~~~~ll~r~l~~lEG~~~~LdP~~d~~~~~~p~~~  429 (517)
                      +.++|+.++-+.+++||.+|+|||++|++....+|+.
T Consensus       520 ids~f~tvvlsilvlEG~gRqLdP~lDl~~~~~~~l~  556 (565)
T KOG1236         520 IDSNFTTVVLSILVLEGFGRQLDPDLDLFQLRTFLLN  556 (565)
T ss_pred             ECCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf             0243377889999886224446998216664788999


No 6  
>KOG1234 consensus
Probab=100.00  E-value=3.5e-40  Score=330.61  Aligned_cols=336  Identities=22%  Similarity=0.276  Sum_probs=295.6

Q ss_pred             CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHHHHHHHHEECCCCCCEEEEEEECCH
Q ss_conf             45988999999988748878998999998754047889999998676-66778888655550212888723687640310
Q gi|254780623|r   79 DLIGKKLSEDLALLQDKMDFFPTNTARLSVASALKAPIEELYCEFDD-PIAAASIAQVHPAVVHDINGYRKVAVKIIRPG  157 (517)
Q Consensus        79 Dllp~~~~~eL~~Lqd~vpp~~~~~v~~~ie~elg~~~~~~F~~fde-PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~  157 (517)
                      -++|+...+-+++.++.+-.+|..+..++...++|.+|.+.|++||+ |.|+|||||||+|++++   |.+||||||+||
T Consensus         8 ~ll~p~l~qi~erVrqsAd~MP~~Ql~~vm~~~lG~nW~~Kf~~fd~~P~AaASIGQVHrArl~~---g~eVavKiQYPG   84 (363)
T KOG1234           8 SLLPPTLGQILERVRQSADFMPPKQLEPVMWGELGGNWAQKFSSFDDGPFAAASIGQVHRARLAD---GPEVAVKIQYPG   84 (363)
T ss_pred             CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC---CCEEEEECCCCC
T ss_conf             70587799999985376566985664478763224558998876424763124688899998537---980021047786


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC
Q ss_conf             46887777889998753211468543346917999999988788865599998898720244677664300001022178
Q gi|254780623|r  158 VRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER  237 (517)
Q Consensus       158 i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~  237 (517)
                      +.+.|+.|+..+.++++.- ...|.  .+-+...++-.++.+..|+||.+||+.+.+|+..+++++.++||.|++++||.
T Consensus        85 va~sI~SD~~nl~~lLn~s-~llPk--GLFLd~~i~~ArkEL~~ECDYqrEA~~~~kFr~LLs~~p~f~VP~Vv~Elct~  161 (363)
T KOG1234          85 VARSIDSDANNLSRLLNFS-GLLPK--GLFLDVLIEVARKELKWECDYQREAASALKFRPLLSDDPNFYVPRVVDELCTV  161 (363)
T ss_pred             HHHHCCCCHHHHHHHHHHC-CCCCC--CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC
T ss_conf             1654148689999998621-64643--21378999999986322342477777776468874689876513778765153


Q ss_pred             CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEEC-CCCEEEEECCHHEECCHHH
Q ss_conf             335300247863242677332002256899999999999897448661787862289802-8953574340312169899
Q gi|254780623|r  238 DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDS-KGYIVAVDMGITGRLSKRE  316 (517)
Q Consensus       238 ~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~-dg~i~~lDfG~vg~l~~~~  316 (517)
                      +||+||++.|++|...+.+...  .|+.++..+++.+++.+|+..|...||..+|++++. ..+|.+||||.....++..
T Consensus       162 rvlt~el~~G~pid~~~~~sQ~--~rn~i~~~~l~lcLrEif~f~fMQTDPNWsNFly~~~tk~i~LlDFGAsr~y~~~F  239 (363)
T KOG1234         162 RVLTLELGQGLPIDKTAKLSQE--TRNYIGYKLLELCLREIFEFRFMQTDPNWSNFLYNGRTKKIELLDFGASREYGEKF  239 (363)
T ss_pred             HHHHHHHHCCCCCHHHHCCCHH--HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCEEEEEECCCCCCCCHHH
T ss_conf             1433444047201222110488--99999999999999999887543379877875117776557887436553126789


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHHCCCC---CHHHCCHHHHHHHHHHHHHHCC
Q ss_conf             9999976699971872789999998412667789---368999999852100133---4333113568999997545279
Q gi|254780623|r  317 RRFLAEILYGFISRDYQRVADVHFEAGYVPRHHN---RFSFAQAIRAIGEPIHGQ---SSDVISMGKLLTMLFEITELFD  390 (517)
Q Consensus       317 r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d---~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~  390 (517)
                      -..+.+++.|.+++|-+++.+.-.++|+.+..-.   .+.-...+-.+-+++.+.   ++++-++..-+..+.-++-+|.
T Consensus       240 ~d~Y~~~~~aaa~~dr~~v~e~S~~lgfLtg~Es~~m~DAHv~sv~ilgepfa~~~pydF~~q~~t~ri~~lipvmL~hR  319 (363)
T KOG1234         240 IDKYIRLLKAAADRDREGVIEMSRELGFLTGYESKVMEDAHVESVMILGEPFASDGPYDFGDQTVTDRIQNLIPVMLRHR  319 (363)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             99999999999712668899998885651351387788776667641045335789967676689999986527998656


Q ss_pred             CCCCH-HHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             71288-899999999998849987688988899
Q gi|254780623|r  391 MMTRP-ELVMLQKTMVVVEGVARMLNPEFNMWV  422 (517)
Q Consensus       391 ~~~P~-~~~ll~r~l~~lEG~~~~LdP~~d~~~  422 (517)
                      +.-|| |..-+-|.++-.-=.|.+|...+.--+
T Consensus       320 L~pPPeEtYsLHRklsG~fL~cakl~A~v~C~~  352 (363)
T KOG1234         320 LCPPPEETYSLHRKLSGAFLLCAKLGATVPCRD  352 (363)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf             789948889999984238999998668770799


No 7  
>pfam03109 ABC1 ABC1 family. This family includes ABC1 from yeast and AarF from E. coli. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex and E. coli AarF is required for ubiquinone production. It has been suggested that members of the ABC1 family are novel chaperonins. These proteins are unrelated to the ABC transporter proteins.
Probab=99.96  E-value=4.3e-30  Score=252.42  Aligned_cols=116  Identities=41%  Similarity=0.606  Sum_probs=111.3

Q ss_pred             HHCCCCHHHHHHHHH-HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf             404788999999867-6667788886555502128887236876403104688777788999875321146854334691
Q gi|254780623|r  110 SALKAPIEELYCEFD-DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCF  188 (517)
Q Consensus       110 ~elg~~~~~~F~~fd-ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~  188 (517)
                      +|||.+|+++|++|| +|+|||||||||+|+|+|   |++||||||||||++.|..|+.++++++++++++.+   .+++
T Consensus         1 eelG~~~~~~F~~fd~~PiasASIaQVh~a~l~~---G~~VaVKVqrP~i~~~i~~Dl~~l~~~~~~~~~~~~---~~~~   74 (117)
T pfam03109         1 EELGAPVEEVFAEFDEEPIAAASIAQVHRAVLKD---GEEVAVKVQRPGVKKRIRSDLKLLKFLAKILKKFFP---GFDL   74 (117)
T ss_pred             CCCCCCHHHHHHHCCCCHHHHHHHHHEEEEEECC---CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCC---CCCH
T ss_conf             9789889999885796436555045746799748---987999887707899999999999999999999778---7999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCC
Q ss_conf             7999999988788865599998898720244677664300001
Q gi|254780623|r  189 SAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKID  231 (517)
Q Consensus       189 ~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy  231 (517)
                      .++++||...+.+|+||++||+|+++|+++|++++.++||+||
T Consensus        75 ~~~~~e~~~~l~~ElD~~~Ea~n~~~f~~~~~~~~~v~iP~vY  117 (117)
T pfam03109        75 DWLVDEFRKSLPQELDFLREAANAEKFRENFADLPWVYVPKVY  117 (117)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf             9999999999999977999999999999981899798829839


No 8  
>pfam01163 RIO1 RIO1 family. This is a family of atypical serine kinases which are found in archaea, bacteria and eukaryotes. Activity of Rio1 is vital in Saccharomyces cerevisiae for the processing of ribosomal RNA, as well as for proper cell cycle progression and chromosome maintenance. The structure of RIO1 has been determined.
Probab=99.22  E-value=2.7e-10  Score=98.95  Aligned_cols=178  Identities=23%  Similarity=0.283  Sum_probs=120.4

Q ss_pred             HHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             55550212888723687640310468877778899987532114685433469179999999887888655999988987
Q gi|254780623|r  135 VHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSE  214 (517)
Q Consensus       135 Vh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~  214 (517)
                      ||.|.-.+   |++||||+-|-|..     +++-++.-.....++. . ...++..++...+         ..|-+|+.+
T Consensus         2 Vy~~~~~~---g~~vavKi~r~~~~-----~Fk~~~~y~~~~~r~~-~-~~~~~~~l~~~wa---------~kEf~nL~r   62 (186)
T pfam01163         2 VYHAYSED---GKKVAVKIYRTGTT-----SFKKRKRYRDGDFRFR-D-SKTSWRYLVRLWA---------EKEFRNLKR   62 (186)
T ss_pred             EEEEECCC---CCEEEEEEEECCCH-----HHCCHHHHCCCCCCCC-C-CCCCHHHHHHHHH---------HHHHHHHHH
T ss_conf             69998899---99999999864840-----0161767437764335-7-8889889999999---------999999999


Q ss_pred             HHCCCCCCCCCCCHHCCCHHCCCCEEEEECC--CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCE
Q ss_conf             2024467766430000102217833530024--78632426773320022568999999999998974486617878622
Q gi|254780623|r  215 MAENTVKDQGFRVPKIDWNRTERDVITMEWI--DGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGN  292 (517)
Q Consensus       215 ~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i--~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGN  292 (517)
                      +.+     .++.||+++  .+.++|||||||  +|.+...+...... .+...+...+++..-...-..|+.|||.-+=|
T Consensus        63 l~~-----~Gv~VP~Pi--~~~r~vlvMe~Ig~~g~pap~Lkd~~~~-~~~~~~~~~ii~~~~~~y~~~glVHgDLSEyN  134 (186)
T pfam01163        63 LYE-----AGVPVPKPI--AVNRHVLVMEFIGDDGVPAPRLKDVELE-EEAEEIYDEIIREMRRLYQEAGLVHGDLSEYN  134 (186)
T ss_pred             HHH-----CCCCCCCEE--EEECCEEEEEEECCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHCCCEECCCHHHH
T ss_conf             998-----499999858--9629899999856899335501007864-53999999999999999996693213620655


Q ss_pred             EEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
Q ss_conf             8980289535743403121698999999976699971872789999998412667
Q gi|254780623|r  293 LFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPR  347 (517)
Q Consensus       293 i~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~  347 (517)
                      |++.+ +++++||||..-..+-..       -..+..+|...+..-+...|....
T Consensus       135 IL~~~-~~~~iID~~QaV~~~hp~-------A~~~L~RDi~nI~~fF~k~gv~~~  181 (186)
T pfam01163       135 VLVDD-DKPVIIDVPQAVETDHPN-------ALEFLERDVENIINFFRRKGVDVV  181 (186)
T ss_pred             EEEEC-CCEEEEECCCCCCCCCCC-------HHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             06438-967999567522589978-------899999999999999987399978


No 9  
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=99.19  E-value=5.1e-11  Score=104.55  Aligned_cols=161  Identities=24%  Similarity=0.302  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             99867666778888655550212888723687640310468877778899987532114685433469179999999887
Q gi|254780623|r  120 YCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT  199 (517)
Q Consensus       120 F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  199 (517)
                      ++.+.-||++|==|-||.|.-.+   |.+||||+-|-+...     ++.++.-   - .+....+..++......     
T Consensus        16 i~~v~~~I~tGKEa~Vy~a~~~~---g~~~avKi~r~~~~s-----Fk~~k~~---r-~y~~~~~~~~~~~~~r~-----   78 (198)
T cd05144          16 VESLGNQIGVGKESDVYLALDPD---GNPVALKFHRLGRTS-----FRKVKRK---R-DYLGDRKHASWLYLSRL-----   78 (198)
T ss_pred             CHHHCCEEECCCCCEEEEEECCC---CCEEEEEEEECCCCC-----EEECCCE---E-HHHCCCCCCCHHHHHHH-----
T ss_conf             75409756226261289999899---989999999958530-----4131210---0-22125553128999999-----


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             88865599998898720244677664300001022178335300247863242677332002256899999999999897
Q gi|254780623|r  200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL  279 (517)
Q Consensus       200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~  279 (517)
                          -=+.|-+|+.++.+     .+|.||+|+  ...++|||||||+|.++.++..++    ++..+-+.+++..-++ +
T Consensus        79 ----~A~kE~~nL~rl~~-----~Gv~VP~Pi--~~~~~vlvMefI~g~~l~~~~~~~----~~~~~y~~ii~~~~~l-~  142 (198)
T cd05144          79 ----AAQKEFAALKALYE-----EGFPVPKPI--DWNRHAVVMEYIDGVELYRVRVLE----DPEEVLDEILEEIVKA-Y  142 (198)
T ss_pred             ----HHHHHHHHHHHHHH-----CCCCCCCEE--EECCCEEEEEECCCCCCCCCCCCH----HHHHHHHHHHHHHHHH-H
T ss_conf             ----99999999999998-----499999858--851898999733781131154415----1999999999999999-8


Q ss_pred             HCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             4486617878622898028953574340312169
Q gi|254780623|r  280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                      ..|..|||.-+=||++..+|++++||||..-..+
T Consensus       143 ~~glVHgDLSEyNIL~~~~~~~~iID~~QaV~~~  176 (198)
T cd05144         143 KHGIIHGDLSEFNILVDDDEKIYIIDWPQMVSTD  176 (198)
T ss_pred             HCCCCCCCCCHHHEEECCCCCEEEEECCCCCCCC
T ss_conf             6694325743665255479989999666501578


No 10 
>cd05119 RIO RIO kinase family, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct
Probab=99.17  E-value=1.6e-10  Score=100.67  Aligned_cols=156  Identities=26%  Similarity=0.314  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             6677888865555021288872368764031046887777889998753211-468543346917999999988788865
Q gi|254780623|r  126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQE-KLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~-~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      ||++|==|-||.|.-.+   |.+||||+-|-+...     .+-.+.   ..+ .........++..++...+        
T Consensus         4 ~I~~GKEa~Vy~a~~~~---g~~~avKi~r~~~~~-----Fk~~~~---y~~~d~~~~~~~~~~~~~~~~wA--------   64 (187)
T cd05119           4 PIGTGKEADVYLALDGD---GEPVAVKIYRTGRTS-----FKKRKR---YRTGDYRFGRKKSNWRYLSRLWA--------   64 (187)
T ss_pred             CCCCCCCCEEEEEECCC---CCEEEEEEEECCCCC-----CCCHHH---HCCCHHHHCCCCCCHHHHHHHHH--------
T ss_conf             75125571189999899---999999997667343-----152777---31320431578889999999999--------


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCC-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             5999988987202446776643000010221783353002478-----63242677332002256899999999999897
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDG-----VKISDTEKLRACGHDLERLSVTLVQSFLLHTL  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G-----~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~  279 (517)
                       ..|-+|+.++.+     .++.||+++  ...++|||||||.|     .++.|+...    .++..+-..+++..-++.-
T Consensus        65 -~kEf~~L~rl~~-----~Gv~VP~Pi--~~~~~vlvMe~Ig~~~~~ap~L~~~~~~----~~~~~~~~~il~~~~~~~~  132 (187)
T cd05119          65 -EKEFRNLKRLYE-----AGVPVPKPI--DLNRHVLVMEFIGGDGIPAPRLKDVRLL----EDPEELYDQILELMRKLYR  132 (187)
T ss_pred             -HHHHHHHHHHHH-----CCCCCCCEE--EEECCEEEEEEECCCCCCCCCHHHCCCC----HHHHHHHHHHHHHHHHHHH
T ss_conf             -999999999998-----599998079--9709879999816889778465338752----5399999999999999999


Q ss_pred             HCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             4486617878622898028953574340312169
Q gi|254780623|r  280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                      +.|..|||..+-||++. ++++++||||.+-..+
T Consensus       133 ~~glVHgDLSeyNilv~-~~~~~iID~pQaV~~~  165 (187)
T cd05119         133 EAGLVHGDLSEYNILVD-DGKVYIIDVPQAVEID  165 (187)
T ss_pred             HCCCCCCCCCHHHEEEE-CCEEEEEECCCEECCC
T ss_conf             74931036555545898-9908999557210489


No 11 
>smart00090 RIO RIO-like kinase.
Probab=99.15  E-value=5.2e-10  Score=96.74  Aligned_cols=198  Identities=22%  Similarity=0.286  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCHHHHHHHHHHH
Q ss_conf             986766677888865555021288872368764031046887777889998753211--468543346917999999988
Q gi|254780623|r  121 CEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQE--KLLPSMRRLCFSAVVRALEQV  198 (517)
Q Consensus       121 ~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~--~~~~~~~~~~~~~~~~e~~~~  198 (517)
                      +.+..||++|==|-||.|...|++ |++||||+-|-+..     +++.++   +..+  ..+. ....++..++...+  
T Consensus        30 ~~l~~~I~~GKEa~Vy~a~~~~~~-g~~vavKi~r~~~~-----~Fk~~~---~y~~gd~Rf~-~~~~~~~~~~~~wA--   97 (237)
T smart00090       30 SAIGGCISTGKEANVYHALDFDGS-GKERAVKIYRTGTL-----EFKRRD---RYVDGDFRFK-YRKINPRKLVRLWA--   97 (237)
T ss_pred             HHHCCEEECCCCCEEEEEEEECCC-CCEEEEEEEECCCC-----CCCCHH---HHCCCCCCCC-CCCCCHHHHHHHHH--
T ss_conf             553975402417037999844799-98899999774752-----305376---6336541025-68889889999999--


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCC---CHHHHHHHHHHHHH
Q ss_conf             788865599998898720244677664300001022178335300247863242677332002---25689999999999
Q gi|254780623|r  199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGH---DLERLSVTLVQSFL  275 (517)
Q Consensus       199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~---d~~~la~~l~~~~~  275 (517)
                             ..|-+|+.++.+     ..+.||+|+  ...++|||||||.|.-+.. ..++....   ++..+-..+++.. 
T Consensus        98 -------~kEf~nL~rl~~-----aGv~VP~Pi--~~~~nvlvMefIg~~~~pa-p~L~d~~~~~~~~~~~~~~il~~~-  161 (237)
T smart00090       98 -------EKEFRNLQRLYE-----AGVPVPKPI--AWRRNVLVMEFIGGDGLPA-PRLKDVEPEEEEEFELYDDILEEM-  161 (237)
T ss_pred             -------HHHHHHHHHHHH-----CCCCCCCEE--EEECCEEEEEEECCCCCCC-CCHHCCCCCHHHHHHHHHHHHHHH-
T ss_conf             -------999999999998-----599999848--9648989999746889745-432116888577999999999999-


Q ss_pred             HHHHHCC-EECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             9897448-661787862289802895357434031216989999999766999718727899999984126677893689
Q gi|254780623|r  276 LHTLRDG-FFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSF  354 (517)
Q Consensus       276 ~qi~~~G-fFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~  354 (517)
                      +.++..| ..|||.-+=||++. ++++++||||..-..+...       -.-+..+|...+..-+..-|....  |..++
T Consensus       162 ~~~y~~g~lVHgDLSEyNIL~~-~~~~~iID~~QaV~~~hp~-------A~~~L~RDi~nI~~fF~k~g~~~~--~~~e~  231 (237)
T smart00090      162 RKLYKEGELVHGDLSEYNILVH-DGKVVIIDVSQSVELDHPM-------ALEFLERDIRNIIRFFRRKGVDEL--DEEEL  231 (237)
T ss_pred             HHHHHHCCEEECCHHHHHHEEE-CCCEEEEECCCCCCCCCCC-------HHHHHHHHHHHHHHHHHHCCCCCC--CHHHH
T ss_conf             9999827952036046551420-8967999467523689988-------899999999999999987399979--99999


Q ss_pred             HH
Q ss_conf             99
Q gi|254780623|r  355 AQ  356 (517)
Q Consensus       355 ~~  356 (517)
                      ..
T Consensus       232 ~~  233 (237)
T smart00090      232 FE  233 (237)
T ss_pred             HH
T ss_conf             87


No 12 
>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro
Probab=99.11  E-value=6.7e-10  Score=95.89  Aligned_cols=161  Identities=22%  Similarity=0.233  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHC--CCCCC-CCCCCHHHHHHHHHHHHHHH
Q ss_conf             6677888865555021288872368764031046887777889998753211--46854-33469179999999887888
Q gi|254780623|r  126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQE--KLLPS-MRRLCFSAVVRALEQVTKME  202 (517)
Q Consensus       126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~--~~~~~-~~~~~~~~~~~e~~~~l~~E  202 (517)
                      ||++|==|-||.|.-.+   |.+||||+-|.+. ..++.    .   .+.++  ..... ....+...++...       
T Consensus         4 ~I~~GKEs~Vy~a~~~~---g~~~alKi~r~~~-~sFk~----~---~~Y~~gd~r~~~~~~~~~~r~~~~~w-------   65 (190)
T cd05145           4 CISTGKEANVYHARTGD---GEELAVKIYKTST-LSFKD----R---DKYIEGDPRFRSRYSKSNPRKLVFAW-------   65 (190)
T ss_pred             CCCCCCCCEEEEEECCC---CCEEEEEEEECCC-CCCCC----H---HHHCCCCCEEECCCCCCCHHHHHHHH-------
T ss_conf             61035150289999899---9889999977264-33314----4---45105772240564766988999999-------


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECC--CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             6559999889872024467766430000102217833530024--78632426773320022568999999999998974
Q gi|254780623|r  203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWI--DGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLR  280 (517)
Q Consensus       203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i--~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~  280 (517)
                        =..|-+|+.++.+     .++.||+++  ...+++||||||  +|.+.-.+...+....++..+-+.+++...++.-.
T Consensus        66 --A~kEf~~L~~l~~-----~Gv~VP~Pi--~~~rhvlvMefIg~~g~pap~L~d~~~~~~~~~~~~~~il~~~~~l~~~  136 (190)
T cd05145          66 --AEKEFRNLKRLYE-----AGVPVPEPI--LLKKNVLVMEFIGDDGSPAPRLKDVPLEEEEAEELYEQVVEQMRRLYQE  136 (190)
T ss_pred             --HHHHHHHHHHHHH-----CCCCCCCEE--EECCCEEEEEEECCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             --9999999999998-----599999568--8629899999865898424303205677350999999999999999997


Q ss_pred             CCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             4866178786228980289535743403121698
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      .|+.|||.-+=||++. ++++++||||.+-..+-
T Consensus       137 ~glVHgDLSEyNILv~-~~~~~iID~pQaV~~~h  169 (190)
T cd05145         137 AGLVHGDLSEYNILYH-DGKPYIIDVSQAVELDH  169 (190)
T ss_pred             CCEEECCCCHHHEEEE-CCCEEEEECCCCCCCCC
T ss_conf             4921036415533897-89479995576125789


No 13 
>cd05038 PTKc_Jak_rpt2 Catalytic (Repeat 2) Domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut
Probab=99.08  E-value=5.8e-09  Score=88.62  Aligned_cols=142  Identities=18%  Similarity=0.214  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHHHEE--CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021--2888723687640310468877778899987532114685433469179999999887888
Q gi|254780623|r  125 DPIAAASIAQVHPAVVH--DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME  202 (517)
Q Consensus       125 ePlasASiaQVh~A~l~--d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E  202 (517)
                      ++|++||-|.||+|+++  ++.+|+.||||+.++...+                             ...          
T Consensus        10 ~~IG~G~fG~Vy~~~~~~~~~~~~~~VAvK~i~~~~~~-----------------------------~~~----------   50 (279)
T cd05038          10 KQLGEGHFGTVYLGTYDPPDDNTGEIVAVKKLNTSGVE-----------------------------AHR----------   50 (279)
T ss_pred             EEEECCCCEEEEEEEEECCCCCCCEEEEEEEECCCCCH-----------------------------HHH----------
T ss_conf             89703748099999995785877839999998845597-----------------------------899----------


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC-----CCEEEEECCCCCCCCHHHHHHHHCCCHH---HHHHHHHHHH
Q ss_conf             6559999889872024467766430000102217-----8335300247863242677332002256---8999999999
Q gi|254780623|r  203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE-----RDVITMEWIDGVKISDTEKLRACGHDLE---RLSVTLVQSF  274 (517)
Q Consensus       203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st-----~~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~l~~~~  274 (517)
                      -+|.+|++.+..++.     |.  |-+.|. +|.     .-.+||||++|-.+.+.-.-.....+..   .++..++.+ 
T Consensus        51 ~~f~~Ei~~l~~l~H-----pn--Iv~l~g-~~~~~~~~~~~iV~Ey~~~GsL~~~l~~~~~~~~~~~~~~i~~qia~g-  121 (279)
T cd05038          51 QDFEREIEIMRTLDH-----EN--IVKYKG-VSEEPGGRSLSLIMEYLPSGSLRDYLRRHRDQLNLKRLLLFALQIAKG-  121 (279)
T ss_pred             HHHHHHHHHHHHCCC-----CC--CCCEEE-EEECCCCCEEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-
T ss_conf             999999999986799-----89--761889-996289987999999179985899986158999999999999999999-


Q ss_pred             HHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             9989744866178786228980289535743403121698
Q gi|254780623|r  275 LLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       275 ~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      +.-+-..|+.|.|.-|.||+++.++.+-+-|||+...++.
T Consensus       122 L~yLH~~~iiHrDlK~~NILl~~~~~~Ki~DFGls~~~~~  161 (279)
T cd05038         122 MDYLGSKRLIHRDLAARNILVDSEDLVKISDFGLAKVLPE  161 (279)
T ss_pred             HHHHHHCCEEECCCCCCCEEECCCCEEEEECCCCCCCCCC
T ss_conf             9988758976552562107788999099934745326578


No 14 
>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]
Probab=99.08  E-value=4.3e-09  Score=89.62  Aligned_cols=196  Identities=22%  Similarity=0.234  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             66778888655550212888723687640310468877778899987532114685433469179999999887888655
Q gi|254780623|r  126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL  205 (517)
Q Consensus       126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~  205 (517)
                      |+.++-=|-||+|.-.+   |+.|||||.|....+--.     +.... .-+..+...+. +...++..+.         
T Consensus        55 ~istGKEA~Vy~a~~~~---~~~~avKiyr~~t~~fk~-----~~~Yi-~gd~Rf~~~~~-~rr~lv~~W~---------  115 (268)
T COG1718          55 CISTGKEANVYLAETGD---GRYVAVKIYRTSTSEFKR-----IRRYI-QGDPRFRNSRS-NRRKLVFAWA---------  115 (268)
T ss_pred             ECCCCCCEEEEEECCCC---CCEEEEEEEEHHHHHHHH-----HHHHH-HCCHHHHCCCC-CHHHHHHHHH---------
T ss_conf             20377414778731578---753799997500355646-----88877-32646534788-8999999999---------


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99998898720244677664300001022178335300247863242677332002---256899999999999897448
Q gi|254780623|r  206 RLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGH---DLERLSVTLVQSFLLHTLRDG  282 (517)
Q Consensus       206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~---d~~~la~~l~~~~~~qi~~~G  282 (517)
                      +.|-+|+.+..+     .+|.||++|  .+-++||+||||.... .-.+.|+..+.   +...+-+.+++..-.+.-.-|
T Consensus       116 ~kEf~NL~R~~e-----AGVrvP~Pi--~~~~nVLvMEfIg~~g-~pAP~LkDv~~e~~e~~~~~~~~v~~~~~l~~~a~  187 (268)
T COG1718         116 RKEFRNLKRAYE-----AGVRVPEPI--AFRNNVLVMEFIGDDG-LPAPRLKDVPLELEEAEGLYEDVVEYMRRLYKEAG  187 (268)
T ss_pred             HHHHHHHHHHHH-----CCCCCCCCE--ECCCCEEEEEECCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999999999997-----599999861--0037758998316778-87987334787715589999999999999998629


Q ss_pred             EECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             66178786228980289535743403121698999999976699971872789999998412667789368999999
Q gi|254780623|r  283 FFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIR  359 (517)
Q Consensus       283 fFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i~  359 (517)
                      ..|||.-.=||++. +|..++||||..-.++...       ...+..+|...++..+...|.   .+|.+.+.+.+.
T Consensus       188 LVHgDLSEyNiL~~-~~~p~iID~~QaV~~~hp~-------a~e~L~RDv~Ni~~fF~r~gv---~~d~e~~l~~i~  253 (268)
T COG1718         188 LVHGDLSEYNILVH-DGEPYIIDVSQAVTIDHPN-------AFEFLERDVRNIARFFRRKGV---EADPEELLEEIK  253 (268)
T ss_pred             CCCCCCHHHEEEEE-CCEEEEEECCCCCCCCCCC-------HHHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHH
T ss_conf             41135323506777-9907999883221467975-------689999999999999987288---889999999986


No 15 
>cd05123 STKc_AGC STKc_AGC: Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required o
Probab=99.04  E-value=3.4e-09  Score=90.38  Aligned_cols=141  Identities=20%  Similarity=0.216  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67788886555502128887236876403104688777788999875321146854334691799999998878886559
Q gi|254780623|r  127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR  206 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~  206 (517)
                      ||.|+-|+||+|.-+.  +|+.||||+.+....                          .+- +    .      .-.+.
T Consensus         1 iG~G~fg~Vy~a~~~~--~~~~vAvK~i~~~~~--------------------------~~~-~----~------~~~~~   41 (250)
T cd05123           1 LGKGSFGKVYLVRKKD--TGKLYAMKVLKKKKI--------------------------LKR-N----E------VEHTL   41 (250)
T ss_pred             CCCCCCEEEEEEEECC--CCCEEEEEEECHHHC--------------------------CCH-H----H------HHHHH
T ss_conf             9668584999999989--997999999846775--------------------------598-9----9------99999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHHHC-CCHH---HHHHHHHHHHHHHHHH
Q ss_conf             99988987202446776643000010221--7833530024786324267733200-2256---8999999999998974
Q gi|254780623|r  207 LEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRACG-HDLE---RLSVTLVQSFLLHTLR  280 (517)
Q Consensus       207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~~~-~d~~---~la~~l~~~~~~qi~~  280 (517)
                      +|++-+.++..     |.|  -++|.-+.  ..-.+||||++|-.+.+.  +...+ .+..   .++..++.+. .-+-.
T Consensus        42 ~E~~il~~l~h-----pnI--v~l~~~~~~~~~~~ivmE~~~gg~L~~~--l~~~~~l~~~~~~~~~~ql~~gl-~~lH~  111 (250)
T cd05123          42 NERDILSRVDH-----PFI--VKLHYAFQTKEKLYLVMEYVNGGDLFTH--LSKEGRFDEERARFYAAEIVLAL-EYLHS  111 (250)
T ss_pred             HHHHHHHHCCC-----CCC--CCCCCEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHHH-HHHHH
T ss_conf             99999997799-----899--8633226359989999948999948999--98759989999999999999999-99998


Q ss_pred             CCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHH
Q ss_conf             486617878622898028953574340312169899
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRE  316 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~  316 (517)
                      .|+.|-|..|.||+++.+|.+.+.|||+...+....
T Consensus       112 ~~iiHrDIKp~NILi~~~g~vkl~DFGla~~~~~~~  147 (250)
T cd05123         112 LGIIYRDLKPENILLDADGHIKLTDFGLAKEGIDDG  147 (250)
T ss_pred             CCEEEEECCHHHCCCCCCCCEEEEECCCCEECCCCC
T ss_conf             997860256775656689998983745225647887


No 16 
>cd06608 STKc_myosinIII_like Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of pho
Probab=98.98  E-value=8.6e-10  Score=95.04  Aligned_cols=145  Identities=21%  Similarity=0.255  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-|+.||-|+||+|+-+.  +|+.||||+.++.-.                           .    .    .      +
T Consensus        12 ~~iG~G~fg~V~~~~~~~--t~~~vAiK~i~~~~~---------------------------~----~----~------~   48 (275)
T cd06608          12 EVIGTGTYGKVYKARHKK--TGQLVAIKIMDIIED---------------------------E----E----E------E   48 (275)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCC---------------------------H----H----H------H
T ss_conf             897227383999999989--998999998776611---------------------------3----9----9------9


Q ss_pred             HHHHHHHHHHHH--CCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHH-HHHHCCCHHHHHHHHHHHHHHHH---
Q ss_conf             599998898720--244677664300001022178335300247863242677-33200225689999999999989---
Q gi|254780623|r  205 LRLEAAAFSEMA--ENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEK-LRACGHDLERLSVTLVQSFLLHT---  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~--~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~-l~~~~~d~~~la~~l~~~~~~qi---  278 (517)
                      +.+|++-+..+.  .|.-..-.+.+..........-.+||||++|-.+.|+-. ....+   +.+-+..+..++.|+   
T Consensus        49 ~~~E~~il~~l~~HpnIv~~~~~~~~~~~~~~~~~~yivmE~~~~G~L~dl~~~~~~~~---~~~~e~~i~~i~~qi~~a  125 (275)
T cd06608          49 IEEEYNILRKYSNHPNIATFYGAFIKKGPPGSDDQLWLVMELCGGGSVTDLVKGLRKKG---KRLKEEWIAYILRETLRG  125 (275)
T ss_pred             HHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHH
T ss_conf             99999999971289987859899973587776887999996589992999999998728---999999999999999999


Q ss_pred             ----HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             ----7448661787862289802895357434031216989
Q gi|254780623|r  279 ----LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       279 ----~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                          -..|+.|.|.-|.||+++.+|++-+.|||....++..
T Consensus       126 l~yLH~~~IiHRDlKp~NILl~~~~~vKl~DFGls~~~~~~  166 (275)
T cd06608         126 LAYLHENKVIHRDIKGQNILLTKEGEVKLVDFGVSAQLDST  166 (275)
T ss_pred             HHHHHHCCEECCCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf             99999799760547779978879998999857887474577


No 17 
>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily.
Probab=98.98  E-value=5.8e-09  Score=88.65  Aligned_cols=134  Identities=19%  Similarity=0.285  Sum_probs=87.5

Q ss_pred             HHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88655550212888723687640310468877778899987532114685433469179999999887888655999988
Q gi|254780623|r  132 IAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAA  211 (517)
Q Consensus       132 iaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n  211 (517)
                      -|.||+|+-+.  +|+.||||+.++.-..   .+                                    .-++.+|++.
T Consensus         2 fg~Vy~a~~~~--~~~~vAiK~i~~~~~~---~~------------------------------------~~~~~~E~~i   40 (244)
T smart00220        2 FGKVYLARDKK--TGKLVAIKVIKKEKIK---KK------------------------------------RERILREISI   40 (244)
T ss_pred             CCEEEEEEECC--CCCEEEEEEEEHHHCH---HH------------------------------------HHHHHHHHHH
T ss_conf             88899999989--9989999998555296---89------------------------------------9999999999


Q ss_pred             HHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHH-CCCHH---HHHHHHHHHHHHHHHHCCEEC
Q ss_conf             987202446776643000010221783--353002478632426773320-02256---899999999999897448661
Q gi|254780623|r  212 FSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRAC-GHDLE---RLSVTLVQSFLLHTLRDGFFH  285 (517)
Q Consensus       212 ~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~-~~d~~---~la~~l~~~~~~qi~~~GfFH  285 (517)
                      +.+++.     +  .|.+.|.-+.+++  .+||||++|-.+.+.-  +.. ..+.+   .++..++.+ +.-+-..|+.|
T Consensus        41 l~~l~h-----~--niv~~~~~~~~~~~~~ivmEy~~~gsL~~~i--~~~~~l~~~~i~~~~~qi~~g-l~ylH~~~ivH  110 (244)
T smart00220       41 LKKLKH-----P--NIVRLYDVFEDEDKLYLVMEYCDGGDLFDLL--KKRGRLSEDEARFYARQILSA-LEYLHSNGIIH  110 (244)
T ss_pred             HHHCCC-----C--CCCCCCEEEEECCEEEEEEECCCCCCHHHHH--HHCCCCCHHHHHHHHHHHHHH-HHHHHHCCEEE
T ss_conf             997799-----2--9997334999899999999688999389999--876999999999999999999-99999899252


Q ss_pred             CCCCCCEEEEECCCCEEEEECCHHEECCHHH
Q ss_conf             7878622898028953574340312169899
Q gi|254780623|r  286 ADLHPGNLFVDSKGYIVAVDMGITGRLSKRE  316 (517)
Q Consensus       286 aDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~  316 (517)
                      .|..|.||+++++|.+.+.|||+...++...
T Consensus       111 rDiKp~NIli~~~~~iKl~DFG~a~~~~~~~  141 (244)
T smart00220      111 RDLKPENILLDEDGHVKLADFGLARQLDPGG  141 (244)
T ss_pred             CCCCHHHEEECCCCCEEEEECCCCEECCCCC
T ss_conf             4366563798589998998746126737887


No 18 
>cd05612 STKc_PRKX_like STKc_PRKX_like: Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell
Probab=98.97  E-value=1.9e-09  Score=92.34  Aligned_cols=138  Identities=18%  Similarity=0.283  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|++||-|+||+|+-+.  +|+.||||+.+..-..                          +.           ...-.
T Consensus         7 ~~lG~G~fg~V~~a~~~~--t~~~~AiK~i~~~~~~--------------------------~~-----------~~~~~   47 (291)
T cd05612           7 ETLGTGTFGRVYLVRHKA--SGAYYALKVLAIPEVI--------------------------RL-----------KQVEH   47 (291)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHHCC--------------------------CH-----------HHHHH
T ss_conf             995138891999999889--9989999998577805--------------------------98-----------99999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH----
Q ss_conf             5999988987202446776643000010221783--3530024786324267733200225689999999999989----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT----  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi----  278 (517)
                      +.+|++-+.++..     |.  |.+.|.-+.+++  .+||||++|-.+.+.  +...+.    +.+.-+..|+.|+    
T Consensus        48 ~~~E~~il~~l~H-----p~--Iv~l~~~~~~~~~~yivmEy~~gg~L~~~--i~~~~~----l~e~~~~~~~~qi~~aL  114 (291)
T cd05612          48 VHNEKSILSEISH-----PF--IVNMYWTFHDDKFLYMLMEYVPGGELFSY--LRKAGK----FSNSTARFYAAEIVCAL  114 (291)
T ss_pred             HHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCC----CCHHHHHHHHHHHHHHH
T ss_conf             9999999987799-----89--89099999989999999978899828999--987399----99999999999999999


Q ss_pred             ---HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             ---744866178786228980289535743403121698
Q gi|254780623|r  279 ---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       279 ---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                         -..|+.|-|.-|.||+++.+|++.+.|||+...+..
T Consensus       115 ~ylH~~~IiHRDlKP~NIll~~~g~vKl~DFG~a~~~~~  153 (291)
T cd05612         115 EYLHSKEIVYRDLKPENLLLDKEGHIKITDFGFAKKVRD  153 (291)
T ss_pred             HHHHHCCCEECCCCCCCCCCCCCCCEEECCCCCEEECCC
T ss_conf             999977974143266553236999789632410044365


No 19 
>cd00180 S_TKc Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail.
Probab=98.97  E-value=9.3e-10  Score=94.80  Aligned_cols=141  Identities=18%  Similarity=0.242  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.||+|+-|+||+|+-+.  +|+.||||+.+..-..                    +        .    ..      -.
T Consensus         6 ~~iG~G~fg~Vy~~~~~~--~~~~vAiK~i~~~~~~--------------------~--------~----~~------~~   45 (256)
T cd00180           6 EKLGKGAFGKVYLARDKK--TGELVAIKIIKKKKEK--------------------K--------K----QV------ER   45 (256)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHCC--------------------H--------H----HH------HH
T ss_conf             898418784999999989--9989999998334489--------------------8--------9----99------99


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHC-CCH---HHHHHHHHHHHHHHH
Q ss_conf             599998898720244677664300001022178--33530024786324267733200-225---689999999999989
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACG-HDL---ERLSVTLVQSFLLHT  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~-~d~---~~la~~l~~~~~~qi  278 (517)
                      |.+|++.+..+..     |.  |.++|.-+.++  -.+||||++|..+.+.-  +..+ .+.   ..++..++.+. .-+
T Consensus        46 ~~~E~~il~~l~H-----pn--Iv~~~~~~~~~~~~~ivmEy~~gg~L~~~i--~~~~~l~~~~~~~i~~qi~~aL-~yl  115 (256)
T cd00180          46 ILREIKILKRLNH-----PN--IVKLYDVFEDEDKLYLVMEYMSGGDLFDLL--KKRGRLSEDEARFYFRQILSGL-EYL  115 (256)
T ss_pred             HHHHHHHHHHCCC-----CC--CCCEEEEEEECCEEEEEEECCCCCCHHHHH--HHCCCCCHHHHHHHHHHHHHHH-HHH
T ss_conf             9999999997799-----69--995999999899999999788998689999--8769999999999999999999-999


Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             7448661787862289802895357434031216989
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      -..|+.|-|.-|.||+++.+|.+-+.|||+...+++.
T Consensus       116 H~~~iiHRDiKp~NILl~~~~~vKL~DFGla~~~~~~  152 (256)
T cd00180         116 HSKGIIHRDLKPENILLDEDGHVKIADFGLAKQLDSG  152 (256)
T ss_pred             HHCCCEEEECCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf             9899677445779879989998999978886576789


No 20 
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=98.97  E-value=8.7e-09  Score=87.25  Aligned_cols=185  Identities=23%  Similarity=0.241  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             86766677888865555021288872368764031046887777889998753211468543346917999999988788
Q gi|254780623|r  122 EFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKM  201 (517)
Q Consensus       122 ~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~  201 (517)
                      .+.++|+-+-=+-||.|....   |++||||.-|-| +..++.    .++--..+..... ..++.+..      .+-. 
T Consensus        94 ~iG~~IGvGKEsdVY~~~~~~---g~~~~vKfHR~G-rtsFrk----vk~~R~y~~~~~h-~sWl~~sR------l~A~-  157 (304)
T COG0478          94 AIGTKIGVGKESDVYVAIDPK---GRKVAVKFHRLG-RTSFRK----VKRNRDYLADKEH-GSWLYVSR------LAAE-  157 (304)
T ss_pred             HHCCCCCCCCCCEEEEEECCC---CCEEEEEEEECC-CHHHHH----HHHHHHHHCCCCC-CCHHHHHH------HHHH-
T ss_conf             623312567543179998899---988899862057-235654----2200656513567-62224678------9899-


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             86559999889872024467766430000102217833530024786324267733200225689999999999989744
Q gi|254780623|r  202 EMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRD  281 (517)
Q Consensus       202 ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~  281 (517)
                           +|-.-+.++.     ..++.||+|+.-  +.+++||||++|.++..+..   ...+++.+...+++.+-. .+..
T Consensus       158 -----rEf~~L~~L~-----~~G~~VP~P~~~--nRHaVvMe~ieG~eL~~~r~---~~en~~~il~~il~~~~~-~~~~  221 (304)
T COG0478         158 -----REFEALQRLY-----PEGVKVPKPIAW--NRHAVVMEYIEGVELYRLRL---DVENPDEILDKILEEVRK-AYRR  221 (304)
T ss_pred             -----HHHHHHHHHH-----HCCCCCCCCCCC--CCCEEEEEHCCCCEEECCCC---CCCCHHHHHHHHHHHHHH-HHHC
T ss_conf             -----9999999840-----338989985344--45243020105614002667---631789999999999999-9972


Q ss_pred             CEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
Q ss_conf             8661787862289802895357434031216989999999766999718727899999984126
Q gi|254780623|r  282 GFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYV  345 (517)
Q Consensus       282 GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~  345 (517)
                      |+.|||.-+=||+|++||.+++|||-.+-..+......+       ..+|...+++.+..-...
T Consensus       222 GiVHGDlSefNIlV~~dg~~~vIDwPQ~v~~~hp~a~e~-------l~RDv~nii~yFrrky~~  278 (304)
T COG0478         222 GIVHGDLSEFNILVTEDGDIVVIDWPQAVPISHPDAEEL-------LERDVENIIKYFRRKYGY  278 (304)
T ss_pred             CCCCCCCCHHEEEEECCCCEEEEECCCCCCCCCCCHHHH-------HHHHHHHHHHHHHHHCCC
T ss_conf             911147735418981699889986766645789788999-------996899999999986066


No 21 
>cd05122 PKc_STE Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phospho
Probab=98.96  E-value=1.2e-09  Score=93.82  Aligned_cols=139  Identities=21%  Similarity=0.277  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.||.|+-|+||+|.-..  +|+.||||+.+..-.+                              ..          -.
T Consensus         6 ~~iG~G~fg~V~~~~~~~--~~~~vAiK~i~~~~~~------------------------------~~----------~~   43 (253)
T cd05122           6 EKIGKGAFGTVYKARHKK--TGELVAVKVIKLESDE------------------------------EQ----------EQ   43 (253)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCHH------------------------------HH----------HH
T ss_conf             797138781999999999--9989999997447456------------------------------89----------99


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHHHC-CCH---HHHHHHHHHHHHHHH
Q ss_conf             5999988987202446776643000010221--7833530024786324267733200-225---689999999999989
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRACG-HDL---ERLSVTLVQSFLLHT  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~~~-~d~---~~la~~l~~~~~~qi  278 (517)
                      +.+|++.+.+++.     |.|  -+.+.-+.  +.-.+||||++|-.+.+.-  +..+ .+.   ..++..++.+.- -+
T Consensus        44 ~~~E~~~l~~l~h-----pnI--v~l~~~~~~~~~~~ivmE~~~gg~L~~~l--~~~~~l~e~~~~~~~~qi~~al~-~l  113 (253)
T cd05122          44 ILNEIQILKKCKH-----PNI--VKYYGSYLKKDELWIVMEYCDGGSLDDLL--KSTGPLPESQIAYICREVLQGLE-YL  113 (253)
T ss_pred             HHHHHHHHHHCCC-----CCC--CCEEEEEEECCEEEEEEECCCCCCHHHHH--HHCCCCCHHHHHHHHHHHHHHHH-HH
T ss_conf             9999999986799-----899--91999999899999999788999989999--75599999999999999999999-99


Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             7448661787862289802895357434031216989
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      -..|+.|-|.-|.||+++.+|++.+.|||+...+++.
T Consensus       114 H~~~ivHRDlKp~Nill~~~g~vKl~DFGla~~~~~~  150 (253)
T cd05122         114 HSNGIIHRDIKPANILLTSDGEVKLADFGVSAQLSDT  150 (253)
T ss_pred             HHCCEECCCCCHHHEEECCCCCEEEEECCCEEEECCC
T ss_conf             9889340657788889989998899243712682478


No 22 
>cd05580 STKc_PKA STKc_PKA: Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It pl
Probab=98.96  E-value=4.3e-09  Score=89.67  Aligned_cols=139  Identities=20%  Similarity=0.276  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|++|+-|+||+|+-+.  +|+.||||+....-       +         .          .. .          +.-.
T Consensus         7 ~~lG~G~fg~V~~a~~~~--t~~~vAiK~i~k~~-------~---------~----------~~-~----------~~~~   47 (290)
T cd05580           7 KTLGTGSFGRVMLVKHKG--TGKYYAMKILSKAK-------I---------V----------KL-K----------QVEH   47 (290)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECHHH-------C---------C----------CH-H----------HHHH
T ss_conf             998327683999999989--99899999985688-------3---------3----------77-8----------9999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH----
Q ss_conf             5999988987202446776643000010221783--3530024786324267733200225689999999999989----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT----  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi----  278 (517)
                      +.+|.+.+..++.     |.  |.+.|.-+.+++  .+||||++|-.+.+.  +...+    .+.+.-+..|+.|+    
T Consensus        48 ~~~E~~il~~l~h-----pn--Iv~l~~~~~~~~~~yivmEy~~gg~L~~~--l~~~~----~l~e~~~~~~~~Qi~~aL  114 (290)
T cd05580          48 VLNEKRILQAVRH-----PF--LVNLLGSFKDNSNLYMVMEFVPGGELFSL--LRRSG----RFPEPVARFYAAQVVLAL  114 (290)
T ss_pred             HHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCC----CCCHHHHHHHHHHHHHHH
T ss_conf             9999999986799-----89--99099999989999999958999898999--98749----999999999999999999


Q ss_pred             ---HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             ---7448661787862289802895357434031216989
Q gi|254780623|r  279 ---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       279 ---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                         -..|+.|-|.-|.||+++.+|.+-+.|||+...++..
T Consensus       115 ~ylH~~~IiHRDiKpeNILl~~~g~iKL~DFG~a~~~~~~  154 (290)
T cd05580         115 EYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGR  154 (290)
T ss_pred             HHHHHCCEEEEECCCCCCCCCCCCCEEEEECCCCEECCCC
T ss_conf             9999889242023643333068998898005533664788


No 23 
>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c
Probab=98.96  E-value=4.2e-09  Score=89.69  Aligned_cols=160  Identities=19%  Similarity=0.192  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             6677888865555021288872368764031046887777889998753211---4685433469179999999887888
Q gi|254780623|r  126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQE---KLLPSMRRLCFSAVVRALEQVTKME  202 (517)
Q Consensus       126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~---~~~~~~~~~~~~~~~~e~~~~l~~E  202 (517)
                      +|++|==|-||.|.-.+   |.+||||+-|-+.. .++.    ..   +..+   ++......-+...++..        
T Consensus         4 ~Ig~GKEa~Vy~a~~~~---g~~~alKi~r~~~~-sFk~----~~---~Y~~gd~r~~~~~~~~~~r~~~~~--------   64 (190)
T cd05147           4 CISTGKEANVYHATTAN---GEERAIKIYKTSIL-VFKD----RD---RYVSGEFRFRHGYCKSNPRKMVRT--------   64 (190)
T ss_pred             CCCCCCCEEEEEEECCC---CCEEEEEEEECCCC-CCCC----HH---HHHCCCHHHHCCCCCCCHHHHHHH--------
T ss_conf             73046260489999899---98999999576701-1046----67---764376656425556698899999--------


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECC--CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             6559999889872024467766430000102217833530024--78632426773320022568999999999998974
Q gi|254780623|r  203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWI--DGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLR  280 (517)
Q Consensus       203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i--~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~  280 (517)
                       -=..|-+|+.++.+     .++.||+++  ...++|||||||  +|.+...+...+....+...+-..+++..-++.-.
T Consensus        65 -wA~kEf~~L~rl~~-----~Gv~VP~Pi--~~~rhvlvMe~Ig~~g~pap~L~d~~~~~~~~~~~~~~il~~~~~ly~~  136 (190)
T cd05147          65 -WAEKEMRNLKRLVT-----AGIPCPEPI--LLKSHVLVMEFIGDDGWAAPRLKDAPLSESKARELYLQVIQIMRILYQD  136 (190)
T ss_pred             -HHHHHHHHHHHHHH-----CCCCCCCEE--EECCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             -99999999999998-----599999846--8529899999855899513201458898799999999999999999997


Q ss_pred             CCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             486617878622898028953574340312169
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                      .|+.|||.-+=||++. ++++++||||.+-..+
T Consensus       137 ~~lVHGDLSEyNIl~~-~~~~~iID~pQaV~~~  168 (190)
T cd05147         137 CRLVHADLSEYNLLYH-DGKLYIIDVSQSVEHD  168 (190)
T ss_pred             CCCEECCCCHHHEEEC-CCCEEEEECCCCCCCC
T ss_conf             4932245315420524-8998999666411478


No 24 
>cd05115 PTKc_Zap-70 Catalytic Domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa. Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho
Probab=98.95  E-value=1.2e-08  Score=86.30  Aligned_cols=141  Identities=15%  Similarity=0.170  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67788886555502128887236876403104688777788999875321146854334691799999998878886559
Q gi|254780623|r  127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR  206 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~  206 (517)
                      |++||-|+||+|+++..+.+.+||||+.+++-.+....                                       +|.
T Consensus         3 lG~G~fG~Vykg~~~~~~~~~~VavK~l~~~~~~~~~~---------------------------------------~f~   43 (257)
T cd05115           3 LGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRD---------------------------------------EMM   43 (257)
T ss_pred             CCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCHHHHH---------------------------------------HHH
T ss_conf             51168929999999759945999999988137978999---------------------------------------999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHHHCCCHHHH---HHHHHHHHHHHHHHC
Q ss_conf             99988987202446776643000010221--7833530024786324267733200225689---999999999989744
Q gi|254780623|r  207 LEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRACGHDLERL---SVTLVQSFLLHTLRD  281 (517)
Q Consensus       207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~~~~d~~~l---a~~l~~~~~~qi~~~  281 (517)
                      +|++.+.+++.     |.|.  +.|. +|  ..-.+||||++|-++.+.-..+......+.+   +..+..+ +.-+-..
T Consensus        44 ~E~~~l~~l~H-----pnIV--~l~g-~~~~~~~~ivmE~~~~G~L~~~l~~~~~~l~~~~~~~i~~qia~g-l~yLH~~  114 (257)
T cd05115          44 REAEIMHQLDN-----PYIV--RMIG-VCEAEALMLVMEMASGGPLNKFLSGKKDEITVSNVVELMHQVSMG-MKYLEGK  114 (257)
T ss_pred             HHHHHHHHCCC-----CCEE--EEEE-EEECCCEEEEEEECCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHH-HHHHHHC
T ss_conf             99999985899-----6880--6999-993197799999179987899983267899999999999999999-9999868


Q ss_pred             CEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             8661787862289802895357434031216989
Q gi|254780623|r  282 GFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       282 GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      |+.|.|.-|.||+++.++.+-+-|||+...+...
T Consensus       115 ~iiHrDLK~~NiLl~~~~~~Ki~DFGls~~~~~~  148 (257)
T cd05115         115 NFVHRDLAARNVLLVNQHYAKISDFGLSKALGAD  148 (257)
T ss_pred             CCCCCCCCCCEEEECCCCCEEEEECCCCEECCCC
T ss_conf             9656767621078858997899976885476899


No 25 
>cd05075 PTKc_Axl Catalytic Domain of the Protein Tyrosine Kinase, Axl. Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor
Probab=98.94  E-value=3e-09  Score=90.79  Aligned_cols=153  Identities=14%  Similarity=0.227  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             67666778888655550212888723687640310468877778899987532114685433469179999999887888
Q gi|254780623|r  123 FDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME  202 (517)
Q Consensus       123 fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E  202 (517)
                      +.+.||+||-|+||+|+++..++..+||||+.+......-                               +       .
T Consensus         3 lg~~iG~G~fG~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~-------------------------------~-------~   44 (272)
T cd05075           3 LGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRS-------------------------------E-------M   44 (272)
T ss_pred             CCCEEEECCCCEEEEEEECCCCEEEEEEEEEECCCCCCHH-------------------------------H-------H
T ss_conf             3898840778199999995999899999999520328989-------------------------------9-------9


Q ss_pred             HHHHHHHHHHHHHHCC-CCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHC-----CCHH---HHHHHHHHH
Q ss_conf             6559999889872024-467766430000102217833530024786324267733200-----2256---899999999
Q gi|254780623|r  203 MDLRLEAAAFSEMAEN-TVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACG-----HDLE---RLSVTLVQS  273 (517)
Q Consensus       203 lD~~~Ea~n~~~~~~~-~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~-----~d~~---~la~~l~~~  273 (517)
                      -+|.+|++.+.+++.- .-..-.+.+...-.+....-++||||++|-.+.+.-.....+     .+.+   .++..++.+
T Consensus        45 ~~f~~E~~~l~~l~HpnIv~l~G~~~~~~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~~~~~ia~g  124 (272)
T cd05075          45 EDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASG  124 (272)
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             99999999999779998824888996445555677668999927999799998541146776779999999999999999


Q ss_pred             HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             99989744866178786228980289535743403121698
Q gi|254780623|r  274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                       +.-+-..|++|.|.-|.||+++.++.+.+-|||+...+..
T Consensus       125 -L~yLH~~~ivHrDLK~~NiLl~~~~~~Kl~DFGls~~~~~  164 (272)
T cd05075         125 -MEYLSSKSFIHRDLAARNCMLNENMNVCVADFGLSKKIYN  164 (272)
T ss_pred             -HHHHHHCCEECCCCCCCEEEECCCCCEEEECCCCCEECCC
T ss_conf             -9987109836476761238988999899810511215468


No 26 
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=98.93  E-value=1.8e-09  Score=92.57  Aligned_cols=138  Identities=22%  Similarity=0.254  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      ++||+|..|+||+|.=.  ..|+.||||+.+|+..+    |-.                           +      .--
T Consensus         8 r~LGrGGMG~VYlArD~--~LgR~VALKvLr~~ls~----d~~---------------------------~------reR   48 (933)
T PRK13184          8 RLIGKGGMGEVYLAYDP--VCSRKVALKRIREDLSD----NPL---------------------------L------KKR   48 (933)
T ss_pred             EEEEECCCEEEEEEEEC--CCCCEEEEEEECHHHCC----CHH---------------------------H------HHH
T ss_conf             79852788789999988--99974899982936667----989---------------------------9------999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHH-HHHHCCCHHHHHH-----HHHHHHHH
Q ss_conf             599998898720244677664300001022178--335300247863242677-3320022568999-----99999999
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEK-LRACGHDLERLSV-----TLVQSFLL  276 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~-l~~~~~d~~~la~-----~l~~~~~~  276 (517)
                      |.+||+.+.++.     .|.|  -.||.-....  --+||||++|..+.+.-. ....+.-++.+++     ..+ .++.
T Consensus        49 FlREAriaArL~-----HPNI--V~VYD~gedg~~~YiVMEyVeG~TL~~LLr~l~qk~~Lp~elae~~sv~~lL-~If~  120 (933)
T PRK13184         49 FLREAKIAADLI-----HPGV--VPVYTICSDGDPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFL-SIFH  120 (933)
T ss_pred             HHHHHHHHHHCC-----CCCC--CEEEEEEEECCEEEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHCCCHHHHH-HHHH
T ss_conf             999999998589-----9398--9298868789953899815899878999976211478863442102288999-9999


Q ss_pred             H-------HHHCCEECCCCCCCEEEEECCCCEEEEECCHH
Q ss_conf             8-------97448661787862289802895357434031
Q gi|254780623|r  277 H-------TLRDGFFHADLHPGNLFVDSKGYIVAVDMGIT  309 (517)
Q Consensus       277 q-------i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~v  309 (517)
                      |       .-..|+.|-|.-|+|||++.+|.+.++|||+.
T Consensus       121 QIc~ALayAHs~GIVHRDLKPaNILLg~~GeVKLlDFGLA  160 (933)
T PRK13184        121 KICATVEYVHSRGILHRDLKPDNILLGLFSEVVILDWGAA  160 (933)
T ss_pred             HHHHHHHHHHHCCCCCCCCCHHHEEECCCCCEEECCCCCC
T ss_conf             9999999999786835889779978889998899127654


No 27 
>cd05063 PTKc_EphR_A2 Catalytic Domain of the Protein Tyrosine Kinase, Ephrin Receptor A2. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored 
Probab=98.92  E-value=9.2e-09  Score=87.06  Aligned_cols=143  Identities=15%  Similarity=0.210  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHHHEEC-CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             7666778888655550212-888723687640310468877778899987532114685433469179999999887888
Q gi|254780623|r  124 DDPIAAASIAQVHPAVVHD-INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME  202 (517)
Q Consensus       124 dePlasASiaQVh~A~l~d-~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E  202 (517)
                      ++-|+.||.|+||+|+++. |..+..||||+.+++..+..                                       .
T Consensus        10 ~~~iG~G~fG~Vykg~~~~~g~~~~~vavK~l~~~~~~~~---------------------------------------~   50 (268)
T cd05063          10 QKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQ---------------------------------------R   50 (268)
T ss_pred             EEEEEECCCCEEEEEEEECCCCEEEEEEEEEECCCCCHHH---------------------------------------H
T ss_conf             1698327883999999988997668999999476779899---------------------------------------9


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC---CCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHHHHHH
Q ss_conf             6559999889872024467766430000102217---83353002478632426773320022568---99999999999
Q gi|254780623|r  203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE---RDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQSFLL  276 (517)
Q Consensus       203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st---~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~~~~~  276 (517)
                      -+|.+|++.+.+++.     +.|.  +.|. +|+   .-.|||||++|-.+.+.-.-.....+..+   ++..++. -+.
T Consensus        51 ~~f~~E~~~l~~l~H-----~nIv--~~~g-~~~~~~~~~iv~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~ia~-gL~  121 (268)
T cd05063          51 QDFLSEASIMGQFSH-----HNII--RLEG-VVTKFKPAMIITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAA-GMK  121 (268)
T ss_pred             HHHHHHHHHHHHCCC-----CCCC--CEEE-EEEECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHH-HHH
T ss_conf             999999999986689-----7897--3507-998899889999828989799976402789999999999999999-999


Q ss_pred             HHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             89744866178786228980289535743403121698
Q gi|254780623|r  277 HTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       277 qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      -+-..|+.|.|.-|.||+++.++.+-+-|||+...+..
T Consensus       122 yLH~~~iiHrDlK~~NILld~~~~~Kl~DFGls~~~~~  159 (268)
T cd05063         122 YLSDMNYVHRDLAARNILVNSNLECKVSDFGLSRVLED  159 (268)
T ss_pred             HHHHCCEECCCCCCCEEEECCCCCEEECCCCCCEECCC
T ss_conf             98329987553475507888999889823765547756


No 28 
>cd05112 PTKc_Itk Catalytic Domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase. Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ
Probab=98.91  E-value=4e-09  Score=89.88  Aligned_cols=136  Identities=19%  Similarity=0.240  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.||+||-|+||+|....   +++||||+.+.+-                           .+              +-+
T Consensus        10 ~~iG~G~fg~Vy~~~~~~---~~~VAvK~~~~~~---------------------------~~--------------~~~   45 (256)
T cd05112          10 QEIGSGQFGLVWLGYWLE---KRKVAIKTIREGA---------------------------MS--------------EED   45 (256)
T ss_pred             EEEECCCCCEEEEEEECC---CCEEEEEEECCCC---------------------------CC--------------HHH
T ss_conf             898058585999999879---9999999988687---------------------------88--------------899


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHHHCCCHH---HHHHHHHHHHHHHHH
Q ss_conf             599998898720244677664300001022--178335300247863242677332002256---899999999999897
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRACGHDLE---RLSVTLVQSFLLHTL  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~l~~~~~~qi~  279 (517)
                      |.+|++.+.+++.     |.  |-+.|.-.  .+.-.|||||++|-.+.+.-.-.....+.+   .++..++.+ +.-+-
T Consensus        46 f~~E~~~l~~l~H-----pn--Iv~~~g~~~~~~~~~iv~Ey~~~G~L~~~l~~~~~~~~~~~~~~i~~~ia~g-l~yLH  117 (256)
T cd05112          46 FIEEAQVMMKLSH-----PK--LVQLYGVCTERSPICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEG-MAYLE  117 (256)
T ss_pred             HHHHHHHHHHCCC-----CC--CCCCCEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHH
T ss_conf             9999999997699-----98--9040317721998999996689998899997547999999999999999999-99983


Q ss_pred             HCCEECCCCCCCEEEEECCCCEEEEECCHHEEC
Q ss_conf             448661787862289802895357434031216
Q gi|254780623|r  280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL  312 (517)
Q Consensus       280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l  312 (517)
                      ..|+.|.|.-|.||+++.++.+-+-|||+...+
T Consensus       118 ~~~iiHrDlk~~NiLl~~~~~~Kl~DFGls~~~  150 (256)
T cd05112         118 SSNVIHRDLAARNCLVGENQVVKVSDFGMTRFV  150 (256)
T ss_pred             HCCEECCCCCCCEEEECCCCCEEEEECCCCEEC
T ss_conf             689156757716389989998999626875055


No 29 
>cd06639 STKc_myosinIIIB Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a reg
Probab=98.91  E-value=3.1e-10  Score=98.45  Aligned_cols=154  Identities=19%  Similarity=0.280  Sum_probs=92.0

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf             40478899999986766677888865555021288872368764031046887777889998753211468543346917
Q gi|254780623|r  110 SALKAPIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFS  189 (517)
Q Consensus       110 ~elg~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~  189 (517)
                      +++|.|.+. | ++-+.|+.||-|.||+|+-+.  +|+.||||+..+.-                            +  
T Consensus        15 ~~~g~p~d~-Y-~i~~~iG~G~fg~Vy~a~~~~--~~~~vAvK~i~~~~----------------------------~--   60 (291)
T cd06639          15 ESLGDPTDT-W-EIIETIGKGTYGKVYKVTNKK--DGSLAAVKILDPIS----------------------------D--   60 (291)
T ss_pred             HHCCCCCCC-E-EEEEEEECCCCCEEEEEEECC--CCCEEEEEEECCCC----------------------------C--
T ss_conf             984997534-7-998898237582999999889--99899999988400----------------------------5--


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC-------CCEEEEECCCCCCCCHHHH-HHHHC-
Q ss_conf             99999998878886559999889872024467766430000102217-------8335300247863242677-33200-
Q gi|254780623|r  190 AVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE-------RDVITMEWIDGVKISDTEK-LRACG-  260 (517)
Q Consensus       190 ~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st-------~~VLvmE~i~G~~i~d~~~-l~~~~-  260 (517)
                           ....+      .+|.+-++.+.    +.|.  |-+.|.-+.+       .-.+||||++|-.+.+.-. ....+ 
T Consensus        61 -----~~~~~------~~E~~il~~l~----~Hpn--Iv~~~~~~~~~~~~~~~~l~ivmE~~~gg~L~~~i~~~~~~~~  123 (291)
T cd06639          61 -----VDEEI------EAEYNILQSLP----NHPN--VVKFYGMFYKADKLVGGQLWLVLELCNGGSVTELVKGLLICGQ  123 (291)
T ss_pred             -----CHHHH------HHHHHHHHHHC----CCCC--EEEEEEEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf             -----28999------99999999731----7999--8899999995475678718999976899969999998776079


Q ss_pred             -CCHHH---HHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             -22568---99999999999897448661787862289802895357434031216989
Q gi|254780623|r  261 -HDLER---LSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       261 -~d~~~---la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                       .+...   ++..++. -+.-+-..|+.|-|.-|.||+++.+|.+-+.|||+...++..
T Consensus       124 ~l~e~~~~~i~~qi~~-aL~ylH~~~IiHRDlKP~NILl~~~g~vKl~DFGls~~~~~~  181 (291)
T cd06639         124 RLDEAMISYILYGALL-GLQHLHNNRIIHRDVKGNNILLTTEGGVKLVDFGVSAQLTST  181 (291)
T ss_pred             CCCHHHHHHHHHHHHH-HHHHHHHCCEEECCCCHHHEEECCCCCEEEECCCEEEECCCC
T ss_conf             9999999999999999-999998789340237747778868998898226122571478


No 30 
>cd05581 STKc_PDK1 STKc_PDK1: Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential fo
Probab=98.91  E-value=8.4e-09  Score=87.39  Aligned_cols=143  Identities=16%  Similarity=0.303  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-||.||-|.||+|+-+.  +|+.||||+....-.   .              .   .           .-...+     
T Consensus         7 ~~iG~G~fg~V~~a~~~~--tg~~vAvK~i~~~~~---~--------------~---~-----------~~~~~~-----   48 (279)
T cd05581           7 KILGEGSFSTVYLAKEKE--TNKEYAIKVLDKRHL---I--------------K---E-----------KKVKYV-----   48 (279)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHC---C--------------C---H-----------HHHHHH-----
T ss_conf             797327790999999889--998999999807890---5--------------6---7-----------789999-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH-----
Q ss_conf             5999988987202446776643000010221783--353002478632426773320022568999999999998-----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH-----  277 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q-----  277 (517)
                       .+|..-+.++.    +.|.  |.+.|.-+.+++  .|+|||++|-.+.+.  +...+.    +-+..+..++.|     
T Consensus        49 -~~E~~il~~l~----~Hp~--Iv~l~~~~~~~~~~yivmE~~~gG~L~~~--l~~~~~----l~e~~~~~~~~qi~~gL  115 (279)
T cd05581          49 -KREKEVLTRLN----GHPG--IVKLYYTFQDEENLYFVLEYAENGELLEY--IKKFGS----FDEKCTRFYTAEILLAL  115 (279)
T ss_pred             -HHHHHHHHHCC----CCCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCC----CCHHHHHHHHHHHHHHH
T ss_conf             -99999998427----9989--78399999989999999948899878999--987699----89999999999999999


Q ss_pred             --HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHH
Q ss_conf             --97448661787862289802895357434031216989999
Q gi|254780623|r  278 --TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERR  318 (517)
Q Consensus       278 --i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~  318 (517)
                        +-..|+.|-|.-|.||+++.+|.+.+.|||....+++....
T Consensus       116 ~~lH~~~ivHRDiKpeNILl~~~g~~kl~DFG~a~~~~~~~~~  158 (279)
T cd05581         116 EYLHSKGIIHRDLKPENILLDKDGHIKITDFGTAKVLDPNSSP  158 (279)
T ss_pred             HHHHHCCCCCCCCCHHHEEECCCCCEEEECCCCCEECCCCCCC
T ss_conf             9999888630547466679989998899227665466776543


No 31 
>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves 
Probab=98.91  E-value=1.1e-08  Score=86.55  Aligned_cols=141  Identities=22%  Similarity=0.248  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +|+..+-..+||+-...    +++.|+|+-+++..                                          ..|
T Consensus         4 ~~l~~G~~N~~y~~~~~----~~~~vlR~~~~~~~------------------------------------------~~~   37 (155)
T cd05120           4 KLLKGGLTNRVYLLGTK----DEDYVLKINPSREK------------------------------------------GAD   37 (155)
T ss_pred             CCCCCCCCCCEEEEEEC----CEEEEEEECCCCCC------------------------------------------HHH
T ss_conf             18799871276999989----96799997999855------------------------------------------655


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             59999889872024467766430000102217--8335300247863242677332002256899999999999897448
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDG  282 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~G  282 (517)
                      ..+|+..++..++.     .+.+|++|....+  ...++|||++|.++++........ -.+++++.+.+  ++++-..+
T Consensus        38 ~~~E~~~l~~l~~~-----~~~~P~~~~~~~~~~~~~~i~~~i~G~~l~~~~~~~~~~-~~~~l~~~l~~--lh~~~~~~  109 (155)
T cd05120          38 REREVAILQLLARK-----GLPVPKVLASGESDGWSYLLMEWIEGETLDEVSEEEKED-IAEQLAELLAK--LHQLPLLV  109 (155)
T ss_pred             HHHHHHHHHHHHHC-----CCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCHHHHHH-HHHHHHHHHHH--HHCCCCCE
T ss_conf             99999999999756-----989787999962699449999721586334479889999-99999999999--86458832


Q ss_pred             EECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHH
Q ss_conf             6617878622898028953574340312169899999
Q gi|254780623|r  283 FFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRF  319 (517)
Q Consensus       283 fFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~  319 (517)
                      +.|+|.|||||++++++.+++|||+.++.=++..=-+
T Consensus       110 l~H~Dl~~~Nil~~~~~~~~lIDwe~a~~~d~~~Dla  146 (155)
T cd05120         110 LCHGDLHPGNILVDDGKILGIIDWEYAGYGPPAFDLA  146 (155)
T ss_pred             EECCCCCCCCEEEECCCEEEEECCHHCCCCCHHHHHH
T ss_conf             6917678670899189979998174316388999999


No 32 
>pfam00069 Pkinase Protein kinase domain.
Probab=98.91  E-value=2.7e-09  Score=91.22  Aligned_cols=141  Identities=19%  Similarity=0.314  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.|+-|+||+|+-+.  +|+.||||+.+..-.+                    +            +      ..-.
T Consensus         5 ~~iG~G~fg~V~~~~~~~--~~~~vAiK~i~~~~~~--------------------~------------~------~~~~   44 (260)
T pfam00069         5 RKLGSGSFGTVYKAKHKG--TGKIVAVKILKKRSEK--------------------S------------K------KDQT   44 (260)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHHCC--------------------H------------H------HHHH
T ss_conf             997328893999999999--9989999998333289--------------------5------------8------9999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCC---HHHHHHHHHHHHHHHHH
Q ss_conf             599998898720244677664300001022178--3353002478632426773320022---56899999999999897
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHD---LERLSVTLVQSFLLHTL  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d---~~~la~~l~~~~~~qi~  279 (517)
                      +.+|++.+.+++.     |.  |-+.|.-+.++  -.|||||++|-.+.+.-.- ....+   ...++..++.+. .-+-
T Consensus        45 ~~~E~~il~~l~H-----pn--Iv~~~~~~~~~~~~~ivmEy~~gg~L~~~l~~-~~~l~~~~~~~~~~qi~~al-~ylH  115 (260)
T pfam00069        45 ARREIRILRRLSH-----PN--IVRLIDAFEDKDHLYLVMEYCEGGDLFDYLSR-GGPLSEDEAKKIALQILRGL-EYLH  115 (260)
T ss_pred             HHHHHHHHHHCCC-----CC--CCCEEEEEEECCEEEEEEECCCCCCHHHHHHH-CCCCCHHHHHHHHHHHHHHH-HHHH
T ss_conf             9999999996799-----89--99299999989999999978899818999986-79999999999999999999-9999


Q ss_pred             HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             44866178786228980289535743403121698
Q gi|254780623|r  280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      ..|+.|-|.-|.||+++.+|.+-+.|||+...++.
T Consensus       116 ~~~iiHRDiKp~NILl~~~~~~Kl~DFGla~~~~~  150 (260)
T pfam00069       116 SNGIIHRDLKPENILLDENGVVKIADFGLAKKLEK  150 (260)
T ss_pred             HCCCEECCCCHHHEEECCCCCEEEEECCCCEECCC
T ss_conf             88945132678997987999899985888646578


No 33 
>cd05041 PTKc_Fes_like Catalytic Domain of Fes-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k
Probab=98.90  E-value=5.8e-09  Score=88.64  Aligned_cols=137  Identities=17%  Similarity=0.191  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      |.|++||-|+||+|++++   +..||||+.+....+...                                       -+
T Consensus         1 e~lG~G~fg~Vy~~~~~~---~~~vAvK~~~~~~~~~~~---------------------------------------~~   38 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKG---KTEVAVKTCRSTLPPDLK---------------------------------------RK   38 (251)
T ss_pred             CCCCCCCCCEEEEEEECC---CCEEEEEEECHHCCHHHH---------------------------------------HH
T ss_conf             977589884899999999---989999998620497899---------------------------------------99


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHHHHHHHHH
Q ss_conf             599998898720244677664300001022--1783353002478632426773320022568---99999999999897
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQSFLLHTL  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~~~~~qi~  279 (517)
                      |.+|++.+.+++.     |.|.  +.|.-.  ...-.|||||++|-.+.+.-.-.....+...   ++..++.+ +.-+-
T Consensus        39 ~~~E~~il~~l~H-----pnIv--~~~g~~~~~~~~~lvmEy~~~G~L~~~l~~~~~~~~~~~~~~i~~~ia~g-l~yLH  110 (251)
T cd05041          39 FLQEAEILKQYDH-----PNIV--KLIGVCVQKQPIYIVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAG-MEYLE  110 (251)
T ss_pred             HHHHHHHHHHCCC-----CCEE--EEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHH
T ss_conf             9999999985899-----9888--89789957998999998479996899997357999999999999999999-99883


Q ss_pred             HCCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             44866178786228980289535743403121
Q gi|254780623|r  280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                      ..|+.|.|.-|.||+++.+|.+-+-|||+...
T Consensus       111 ~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~  142 (251)
T cd05041         111 SKNCIHRDLAARNCLVGENNVLKISDFGMSRE  142 (251)
T ss_pred             HCCCCCCCCCHHHEEECCCCCEEEEECCCCCC
T ss_conf             28952786154008988999189816588604


No 34 
>cd06620 PKc_MAPKK_Byr1_like Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis
Probab=98.90  E-value=6.3e-09  Score=88.33  Aligned_cols=144  Identities=17%  Similarity=0.264  Sum_probs=91.4

Q ss_pred             HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             9867--66677888865555021288872368764031046887777889998753211468543346917999999988
Q gi|254780623|r  121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV  198 (517)
Q Consensus       121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  198 (517)
                      +.|+  +.|++||-|+||+|+-++  +|+.||+|+.+++.....                                 .+ 
T Consensus         5 edy~il~~iG~G~fG~V~~a~~~~--~~~~~A~K~~~~~~~~~~---------------------------------~~-   48 (284)
T cd06620           5 EDLETISDLGAGNGGSVSKVKHIP--TGTVMAKKVVHIGAKSSV---------------------------------RK-   48 (284)
T ss_pred             HHCEEEEEEECCCCCEEEEEEECC--CCCEEEEEEECCCCCHHH---------------------------------HH-
T ss_conf             877898885128991999999879--996999999853059899---------------------------------99-


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHHHC-CCH---HHHHHHHHH
Q ss_conf             788865599998898720244677664300001022--17833530024786324267733200-225---689999999
Q gi|254780623|r  199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRACG-HDL---ERLSVTLVQ  272 (517)
Q Consensus       199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~~~-~d~---~~la~~l~~  272 (517)
                           .+.+|+..+.+++.     |.  |-+.|..+  .+.-.+||||++|-.+.++-  +..+ .+.   ..++..++.
T Consensus        49 -----~~~~Ei~il~~l~h-----p~--IV~l~~~~~~~~~~~ivmEy~~~g~L~~~~--~~~~~l~e~~~~~~~~qi~~  114 (284)
T cd06620          49 -----QILRELQIMHECRS-----PY--IVSFYGAFLNENNICMCMEFMDCGSLDRIY--KKGGPIPVEILGKIAVAVVE  114 (284)
T ss_pred             -----HHHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHHH--HHCCCCCHHHHHHHHHHHHH
T ss_conf             -----99999999986799-----99--993999999899999999657999799999--86599999999999999999


Q ss_pred             HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             999989744866178786228980289535743403121698
Q gi|254780623|r  273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      +....--.+|+.|-|.-|.||+++.+|.+-+.|||+.+.+..
T Consensus       115 ~l~ylH~~~~IvHRDlKp~NILl~~~~~vKl~DFG~s~~~~~  156 (284)
T cd06620         115 GLTYLYNVHRIMHRDIKPSNILVNSRGQIKLCDFGVSGELIN  156 (284)
T ss_pred             HHHHHHHHCCEEECCCCCCCCEECCCCCEEEEECCCCCCCCC
T ss_conf             999998718986322687661077999999963877744266


No 35 
>cd06614 STKc_PAK Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I 
Probab=98.89  E-value=6.8e-09  Score=88.08  Aligned_cols=161  Identities=17%  Similarity=0.202  Sum_probs=95.7

Q ss_pred             HHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             9998754047-889999998676667788886555502128887236876403104688777788999875321146854
Q gi|254780623|r  104 ARLSVASALK-APIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPS  182 (517)
Q Consensus       104 v~~~ie~elg-~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~  182 (517)
                      .+..+..-+. .++.+.|.- -+.|+.||-|.||+|+-+.  +|+.||||+.+-.-                      . 
T Consensus         4 ~~~~~~~~~~~~d~~~~Y~i-~~~iG~G~fg~Vy~a~~~~--tg~~vAiK~i~~~~----------------------~-   57 (287)
T cd06614           4 LKAALKDIVSEGDPRELYDN-LEKIGEGASGEVYTATDRA--TGKEVAIKKMRLRK----------------------Q-   57 (287)
T ss_pred             HHHHHHHHCCCCCHHHCEEE-EEEEECCCCEEEEEEEECC--CCCEEEEEEEECCC----------------------C-
T ss_conf             99999987479994156597-4798038685999999999--99899999987067----------------------4-


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHC
Q ss_conf             3346917999999988788865599998898720244677664300001022178--33530024786324267733200
Q gi|254780623|r  183 MRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACG  260 (517)
Q Consensus       183 ~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~  260 (517)
                             .    ...      .+.+|++.+.+++.     |.  |-+.|.-+.++  -.+||||++|-.+.+.-.-....
T Consensus        58 -------~----~~~------~~~~Ei~il~~l~H-----pn--IV~l~~~~~~~~~~~ivmEy~~gG~L~~~i~~~~~~  113 (287)
T cd06614          58 -------P----KKE------LIINEILIMKECKH-----PN--IVNYYDSYLVGDELWVVMEYMDGGSLTDIITQTFVR  113 (287)
T ss_pred             -------H----HHH------HHHHHHHHHHHCCC-----CC--CCCEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCC
T ss_conf             -------5----799------99999999987799-----99--991999999899999999688899289999866899


Q ss_pred             CCH---HHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             225---6899999999999897448661787862289802895357434031216989
Q gi|254780623|r  261 HDL---ERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       261 ~d~---~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      .+-   ..++..++.+ +.-+-..|+.|-|.-|.||+++.+|.+-+.|||+...++..
T Consensus       114 l~e~~~~~i~~qil~a-L~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~  170 (287)
T cd06614         114 MNESQIAYVCREVLQG-LEYLHSQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKE  170 (287)
T ss_pred             CCHHHHHHHHHHHHHH-HHHHHHCCEECCCCCHHHEEECCCCCEEEECCCCCEECCCC
T ss_conf             8999999999999999-99999889440217679878989999999617775576688


No 36 
>cd05113 PTKc_Btk_Bmx Catalytic Domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome. Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds 
Probab=98.89  E-value=1.3e-08  Score=85.82  Aligned_cols=142  Identities=15%  Similarity=0.183  Sum_probs=91.7

Q ss_pred             HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             9867--66677888865555021288872368764031046887777889998753211468543346917999999988
Q gi|254780623|r  121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV  198 (517)
Q Consensus       121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  198 (517)
                      ++|+  +.|+.||-|.||+|+++.   ..+||||+.+++-.                           +           
T Consensus         4 ~d~~~~~~iG~G~fg~Vy~~~~~~---~~~vAvK~~~~~~~---------------------------~-----------   42 (256)
T cd05113           4 RDLTFLKELGTGQFGVVKYGKWQG---QYDVAIKMIKEGSM---------------------------S-----------   42 (256)
T ss_pred             HHCEEEEEEECCCCEEEEEEEECC---CCEEEEEEECCCCC---------------------------C-----------
T ss_conf             994980697028781999999879---97999999835889---------------------------9-----------


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHHHCCCH---HHHHHHHHHH
Q ss_conf             788865599998898720244677664300001022--17833530024786324267733200225---6899999999
Q gi|254780623|r  199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRACGHDL---ERLSVTLVQS  273 (517)
Q Consensus       199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~~~~d~---~~la~~l~~~  273 (517)
                         +-+|.+|++.+.+++.     |.|  =+.|.-.  ...-.|||||++|-.+.+.-.-.....+.   ..++..++.+
T Consensus        43 ---~~~~~~E~~~l~~l~H-----pnI--V~l~g~~~~~~~~~lv~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~ia~g  112 (256)
T cd05113          43 ---EDEFIEEAKVMMKLSH-----EKL--VQLYGVCTKQRPIYIVTEYLANGCLLNYLREGLKRPTPSQLLEMCKDVCEG  112 (256)
T ss_pred             ---HHHHHHHHHHHHHCCC-----CCC--CCEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             ---8999999999986799-----897--609999988998999998079998899998548999999999999999999


Q ss_pred             HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             99989744866178786228980289535743403121698
Q gi|254780623|r  274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                       +.-+-..|+.|.|.-|.||+++.+|++-+-|||+...+..
T Consensus       113 -l~yLH~~~iiHrDlK~~NiLid~~~~~Kl~DFGls~~~~~  152 (256)
T cd05113         113 -MAYLESKQFIHRDLAARNCLVDSNGTVKVSDFGLSRYVLD  152 (256)
T ss_pred             -HHHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCEECCC
T ss_conf             -9987058943165772769888999799961688517788


No 37 
>cd05114 PTKc_Tec_Rlk Catalytic Domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h
Probab=98.89  E-value=3.6e-09  Score=90.22  Aligned_cols=141  Identities=20%  Similarity=0.246  Sum_probs=92.1

Q ss_pred             HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             9867--66677888865555021288872368764031046887777889998753211468543346917999999988
Q gi|254780623|r  121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV  198 (517)
Q Consensus       121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  198 (517)
                      ++|+  +.||+||-|.||+|+.+.   +.+||||+.+++...                                      
T Consensus         4 ~d~~~~~~iG~G~fG~V~~g~~~~---~~~VAiK~l~~~~~~--------------------------------------   42 (256)
T cd05114           4 SELTFMKELGSGQFGVVHLGKWRA---QIKVAIKAINEGAMS--------------------------------------   42 (256)
T ss_pred             HHEEEEEEEECCCCCEEEEEEECC---CCEEEEEEECCCCCC--------------------------------------
T ss_conf             997986897138897899999889---989999998657798--------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHHHCCCHH---HHHHHHHHH
Q ss_conf             788865599998898720244677664300001022--178335300247863242677332002256---899999999
Q gi|254780623|r  199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRACGHDLE---RLSVTLVQS  273 (517)
Q Consensus       199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~l~~~  273 (517)
                         +-+|.+|++.+.+++.     |.|.  +.|.-.  ...-.+||||++|-.+.+.-.-.....+.+   .++..+++.
T Consensus        43 ---~~~~~~E~~il~~l~H-----pnIV--~~~g~~~~~~~~~iv~Ey~~~GsL~~~l~~~~~~l~~~~~~~i~~~ia~g  112 (256)
T cd05114          43 ---EEDFIEEAKVMMKLSH-----PKLV--QLYGVCTQQKPLYIVTEFMENGCLLNYLRQRQGKLSKDMLLSMCQDVCEG  112 (256)
T ss_pred             ---HHHHHHHHHHHHHCCC-----CCCC--EEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             ---8999999999986899-----8986--09999988998999998389995899997637999999999999999999


Q ss_pred             HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             9998974486617878622898028953574340312169
Q gi|254780623|r  274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                       +.-+-..|+.|.|.-|.||+++.+|.+-+-|||+...+.
T Consensus       113 -l~yLH~~~ivHrDlK~~NiLl~~~~~vKl~DFGla~~~~  151 (256)
T cd05114         113 -MEYLERNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVL  151 (256)
T ss_pred             -HHHHHHCCEECCCCCCCEEEECCCCCEEEECCCCCCCCC
T ss_conf             -999987991367688300889899978994387650667


No 38 
>PRK09605 O-sialoglycoprotein endopeptidase/protein kinase; Reviewed
Probab=98.89  E-value=1.7e-08  Score=85.08  Aligned_cols=91  Identities=30%  Similarity=0.388  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEE
Q ss_conf             59999889872024467766430000102217833530024786324267733200225689999999999989744866
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFF  284 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfF  284 (517)
                      ...||+++.+.++     ..|.+|.+|.==..+..|+||||+|.++.|.-.        ..+++. +......+-..|+.
T Consensus       385 t~~EaR~l~r~~~-----~GV~~P~vy~vD~~~~~I~ME~I~G~~lkd~l~--------~~~~~~-iG~~i~~lH~~gIi  450 (536)
T PRK09605        385 TRAEARLLSEARR-----AGVPTPIIYDIDPENKTITMEYIGGKDLKDVIS--------EELCEK-VGEMVGKLHSAGIV  450 (536)
T ss_pred             HHHHHHHHHHHHH-----CCCCCCEEEEEECCCCEEEEEEECCEEHHHHHH--------HHHHHH-HHHHHHHHHHCCCC
T ss_conf             9999999999997-----699998489997789989999978947999974--------999999-99999999739970


Q ss_pred             CCCCCCCEEEEECCCCEEEEECCHHE
Q ss_conf             17878622898028953574340312
Q gi|254780623|r  285 HADLHPGNLFVDSKGYIVAVDMGITG  310 (517)
Q Consensus       285 HaDPHpGNi~v~~dg~i~~lDfG~vg  310 (517)
                      |+|+.+-|+++. ++++++||||+-.
T Consensus       451 HGDLTTsNiil~-~~~i~lIDFGLs~  475 (536)
T PRK09605        451 HGDLTTSNIIVR-SDRTYLIDFGLGK  475 (536)
T ss_pred             CCCCCHHHEEEE-CCCEEEEECCCCC
T ss_conf             567732407887-9889999799877


No 39 
>cd05059 PTKc_Tec_like Catalytic Domain of Tec-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows
Probab=98.89  E-value=4.2e-09  Score=89.68  Aligned_cols=140  Identities=17%  Similarity=0.237  Sum_probs=90.1

Q ss_pred             HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             9867--66677888865555021288872368764031046887777889998753211468543346917999999988
Q gi|254780623|r  121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV  198 (517)
Q Consensus       121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  198 (517)
                      ++|+  +.||+||-|.||+|.+++   +.+||||+.+++...                                      
T Consensus         4 ~d~~~~~~iG~G~fg~V~~~~~~~---~~~vAvK~l~~~~~~--------------------------------------   42 (256)
T cd05059           4 SELTFLKELGSGQFGVVRLGKWRG---KIDVAIKMIREGAMS--------------------------------------   42 (256)
T ss_pred             HHCEEEEEEECCCCCEEEEEEECC---CCEEEEEEECCCCCC--------------------------------------
T ss_conf             996984597048886999999879---989999998867789--------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCC--HHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHHH
Q ss_conf             7888655999988987202446776643000010--221783353002478632426773320022568---99999999
Q gi|254780623|r  199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDW--NRTERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQS  273 (517)
Q Consensus       199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~--~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~~  273 (517)
                         |-+|.+|++.+.+++.     |.|  =+.|.  ...+.-.|||||++|-.+.+.-.-.....+...   ++..++++
T Consensus        43 ---~~~f~~E~~~l~~l~H-----pnI--v~~~g~~~~~~~~~lvmEy~~~G~L~~~l~~~~~~~~~~~~~~i~~~ia~g  112 (256)
T cd05059          43 ---EDDFIEEAKVMMKLSH-----PNL--VQLYGVCTKQRPIFIVTEYMANGCLLNFLRQRRGKFGTEWLLDMCSDVCEA  112 (256)
T ss_pred             ---HHHHHHHHHHHHHCCC-----CCE--EEEEEEEEECCEEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             ---8999999999985899-----888--159999988998899997069897999998668999999999999999999


Q ss_pred             HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC
Q ss_conf             999897448661787862289802895357434031216
Q gi|254780623|r  274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL  312 (517)
Q Consensus       274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l  312 (517)
                       +.-+-..|+.|.|.-|.||+++.++.+-+-|||+...+
T Consensus       113 -l~yLH~~~ivHrDlK~~NiLl~~~~~~Ki~DFGls~~~  150 (256)
T cd05059         113 -MEYLESNSFIHRDLAARNCLVGEDNVVKVSDFGLARYV  150 (256)
T ss_pred             -HHHHHHCCEECCCCCCCEEEECCCCCEEEEECCCCCCC
T ss_conf             -99998799167867806389999997999866764276


No 40 
>cd06623 PKc_MAPKK_plant_like Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania m
Probab=98.89  E-value=2.2e-09  Score=91.96  Aligned_cols=141  Identities=18%  Similarity=0.271  Sum_probs=90.0

Q ss_pred             HHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             867--666778888655550212888723687640310468877778899987532114685433469179999999887
Q gi|254780623|r  122 EFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT  199 (517)
Q Consensus       122 ~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  199 (517)
                      .|+  +.|+.|+-|+||+|+-+.  +|+.||||+......                                 .+...  
T Consensus         2 d~~~~~~iG~G~fg~Vy~~~~~~--~~~~vAvK~i~~~~~---------------------------------~~~~~--   44 (264)
T cd06623           2 DLERVKVLGQGSSGVVYKVRHKP--TGKIYALKKIHVDGD---------------------------------EEFRK--   44 (264)
T ss_pred             CCEEEEEEECCCCEEEEEEEECC--CCCEEEEEEECCCCC---------------------------------HHHHH--
T ss_conf             97385898317893999999989--998999999821469---------------------------------78999--


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             88865599998898720244677664300001022178335300247863242677332002256899999999999897
Q gi|254780623|r  200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL  279 (517)
Q Consensus       200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~  279 (517)
                          .+.+|++.+..++.    ..-|.+=.++.+ .+.-.|||||++|-.+.+.-  ...+    .+.+..+..++.|+.
T Consensus        45 ----~~~~E~~il~~l~H----pnIV~~~~~~~~-~~~~~lvmEy~~~G~L~~~i--~~~~----~~~e~~~~~~~~qi~  109 (264)
T cd06623          45 ----QLLRELKTLRSCES----PYVVKCYGAFYK-EGEISIVLEYMDGGSLADLL--KKVG----KIPEPVLAYIARQIL  109 (264)
T ss_pred             ----HHHHHHHHHHHCCC----CCCCEEEEEEEE-CCEEEEEEECCCCCCHHHHH--HHCC----CCCHHHHHHHHHHHH
T ss_conf             ----99999999986799----988829999988-99999999789998499999--7348----989999999999999


Q ss_pred             -------H-CCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             -------4-4866178786228980289535743403121698
Q gi|254780623|r  280 -------R-DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       280 -------~-~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                             . .|+.|-|.-|.||+++.+|.+-+.|||+...+++
T Consensus       110 ~gl~yLH~~~~IiHRDlKp~NILl~~~~~iKl~DFG~a~~~~~  152 (264)
T cd06623         110 KGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLEN  152 (264)
T ss_pred             HHHHHHHHCCCEECCCCCHHHEEECCCCCEEEECCCCCEECCC
T ss_conf             9999998708988044788996988999999921878858678


No 41 
>cd06605 PKc_MAPKK Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residu
Probab=98.88  E-value=2.1e-08  Score=84.37  Aligned_cols=142  Identities=19%  Similarity=0.235  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|++||-|.||+|+-+.  +|+.||||+.+.......                                 ...      
T Consensus         7 ~~iG~G~fg~Vy~a~~~~--~g~~vAvK~i~~~~~~~~---------------------------------~~~------   45 (265)
T cd06605           7 GELGAGNSGVVSKVRHRP--TGKIMAVKTIRLEINEAI---------------------------------QKQ------   45 (265)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECHHCCHHH---------------------------------HHH------
T ss_conf             881118680999999989--998999999842059899---------------------------------999------


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHHHHHHHHH
Q ss_conf             599998898720244677664300001022--1783353002478632426773320022568---99999999999897
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQSFLLHTL  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~~~~~qi~  279 (517)
                      +.+|++.+..+.     .|.|.  +.|.-+  ++.-.+||||++|-.+.+.-.-.....+...   ++..++.+. .-+-
T Consensus        46 ~~~Ei~~l~~l~-----HpnIv--~~~~~~~~~~~~~ivmEy~~~g~L~~~~~~~~~~~~e~~~~~i~~qi~~~l-~ylH  117 (265)
T cd06605          46 ILRELDILHKCN-----SPYIV--GFYGAFYNNGDISICMEYMDGGSLDKILKEVQGRIPERILGKIAVAVLKGL-TYLH  117 (265)
T ss_pred             HHHHHHHHHHCC-----CCCCC--EEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHH-HHHH
T ss_conf             999999998679-----98989--098999989988999926899869999987489999999999999999999-9998


Q ss_pred             H-CCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             4-48661787862289802895357434031216989
Q gi|254780623|r  280 R-DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       280 ~-~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      . .|+.|-|.-|.||+++.+|.+-+.|||+...+...
T Consensus       118 ~~~~iiHRDiKp~NILl~~~g~iKl~DFG~s~~~~~~  154 (265)
T cd06605         118 EKHKIIHRDVKPSNILVNSRGEIKLCDFGVSGQLVNS  154 (265)
T ss_pred             HCCCEEEEEECCCCCCCCCCCCEEECCCCCCEECCCC
T ss_conf             7099873210565521889999898437342241578


No 42 
>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.
Probab=98.88  E-value=1.4e-08  Score=85.74  Aligned_cols=185  Identities=15%  Similarity=0.171  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHHEECCCC----CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             66778888655550212888----72368764031046887777889998753211468543346917999999988788
Q gi|254780623|r  126 PIAAASIAQVHPAVVHDING----YRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKM  201 (517)
Q Consensus       126 PlasASiaQVh~A~l~d~~~----g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~  201 (517)
                      +|++|==|-||.|.-.++..    ++++||||-|.+...-     +....-..--.++.......+...++...      
T Consensus         4 ~I~tGKEA~Vy~a~~~~~~~~~~~~~~~AvKiyrt~~~~F-----k~~~~Yv~gd~Rf~~~~~~~~~r~~v~~W------   72 (197)
T cd05146           4 CISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEF-----KNRDKYIKDDYRFKDRFSKLNPRKIIRMW------   72 (197)
T ss_pred             CCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECCCEEE-----CCHHHHHCCCHHHHCCCCCCCHHHHHHHH------
T ss_conf             6414636258999768876544456506899864341044-----16677506664233055555988999999------


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECC--CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             86559999889872024467766430000102217833530024--7863242677332002256899999999999897
Q gi|254780623|r  202 EMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWI--DGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL  279 (517)
Q Consensus       202 ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i--~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~  279 (517)
                         =..|-+|+.++.+     .++.||+++  .+.++||+||||  +|.+...+...+....+...+-..+++...++.-
T Consensus        73 ---a~kEf~nL~rl~~-----~Gv~vP~Pi--~~~~~vlvMe~ig~~g~pap~L~d~~~~~~~~~~~~~~~i~~i~~l~~  142 (197)
T cd05146          73 ---AEKEMHNLKRMQK-----AGIPCPEVV--VLKKHVLVMSFIGDDQVPAPKLKDAKLNDEEMKNAYYQVLSMMKQLYK  142 (197)
T ss_pred             ---HHHHHHHHHHHHH-----CCCCCCCEE--EECCCEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             ---9999999999998-----599999846--752988999983699970743101678848899999999999999999


Q ss_pred             HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             448661787862289802895357434031216989999999766999718727899999
Q gi|254780623|r  280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVH  339 (517)
Q Consensus       280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l  339 (517)
                      ..|..|||.-+=||++. ++++++||||.+-..+-.....       +..+|...+..-+
T Consensus       143 ~~gLVHgDlSEyNil~~-~~~~~iID~~QaV~~~hp~a~e-------~L~RDi~ni~~fF  194 (197)
T cd05146         143 ECNLVHADLSEYNMLWH-DGKVWFIDVSQSVEPTHPHGLE-------FLFRDCRNVIQFF  194 (197)
T ss_pred             HCCCEECCCCHHHEEEC-CCCEEEEECCCCCCCCCCCHHH-------HHHHHHHHHHHHH
T ss_conf             83950124103301642-7987999677401578978899-------9999998999985


No 43 
>cd06659 STKc_PAK6 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase
Probab=98.88  E-value=1.2e-08  Score=86.16  Aligned_cols=161  Identities=19%  Similarity=0.213  Sum_probs=99.1

Q ss_pred             CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             98999998754047889999998676667788886555502128887236876403104688777788999875321146
Q gi|254780623|r  100 PTNTARLSVASALKAPIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKL  179 (517)
Q Consensus       100 ~~~~v~~~ie~elg~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~  179 (517)
                      .|..+-+.+-.. | ++.+.|+..+ -|+.||-|.||+|+-+.  +|+.||||+.+-.                    . 
T Consensus         5 ~~~~~~~~~~~~-~-dp~~~fe~~~-~iG~G~fg~V~~a~~k~--tg~~vAiK~i~~~--------------------~-   58 (297)
T cd06659           5 QFKAALRMVVDQ-G-DPRSLLENYI-KIGEGSTGIVCIAREKH--SGRQVAVKMMDLR--------------------K-   58 (297)
T ss_pred             HHHHHHHHHCCC-C-CHHHHCCCCE-EECCCCCCEEEEEEECC--CCCEEEEEEEECC--------------------C-
T ss_conf             999999987489-9-9689702176-96038882999999899--9989999998605--------------------5-


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHH
Q ss_conf             8543346917999999988788865599998898720244677664300001022178--33530024786324267733
Q gi|254780623|r  180 LPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLR  257 (517)
Q Consensus       180 ~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~  257 (517)
                       .     .       -...      +.+|.+.+.++..     |.|  -+.|.-+.++  -.|||||++|-.+.++-  .
T Consensus        59 -~-----~-------~~~~------~~~Ei~il~~l~H-----pnI--v~l~~~~~~~~~~~ivmEy~~gg~L~~~~--~  110 (297)
T cd06659          59 -Q-----Q-------RREL------LFNEVVIMRDYQH-----QNV--VEMYKSYLVGEELWVLMEFLQGGALTDIV--S  110 (297)
T ss_pred             -C-----C-------HHHH------HHHHHHHHHHCCC-----CCC--CEEEEEEEECCEEEEEEECCCCCCHHHHH--H
T ss_conf             -2-----0-------4899------9999999997799-----899--91999999899999999678989389998--7


Q ss_pred             HHCCCHHH---HHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             20022568---99999999999897448661787862289802895357434031216989
Q gi|254780623|r  258 ACGHDLER---LSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       258 ~~~~d~~~---la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      ....+-+.   ++..++.+ +.-+-..|+.|-|.-|.||+++.+|++-+.|||+...++.+
T Consensus       111 ~~~l~e~~~~~i~~qil~a-L~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFG~a~~~~~~  170 (297)
T cd06659         111 QTRLNEEQIATVCESVLQA-LCYLHSQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKD  170 (297)
T ss_pred             CCCCCHHHHHHHHHHHHHH-HHHHHHCCEEECCCCCHHEEECCCCCEEEEECCCCEECCCC
T ss_conf             2899999999999999999-99999789664668700079989998999965784442688


No 44 
>cd05095 PTKc_DDR2 Catalytic Domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin domain receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit
Probab=98.87  E-value=2.3e-08  Score=83.96  Aligned_cols=145  Identities=17%  Similarity=0.217  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHHHHHHEECCC--------------CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             86766677888865555021288--------------8723687640310468877778899987532114685433469
Q gi|254780623|r  122 EFDDPIAAASIAQVHPAVVHDIN--------------GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLC  187 (517)
Q Consensus       122 ~fdePlasASiaQVh~A~l~d~~--------------~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~  187 (517)
                      .|.+.|++|+-|.||+|+++...              .+.-||||..++...+                           
T Consensus         8 ~~~~~lG~G~FG~Vy~~~~~g~~~~~~~~~~~~~~~~~~~~VAvK~l~~~~~~---------------------------   60 (296)
T cd05095           8 TFKEKLGEGQFGEVHLCEAEGMQKFMDKDFSLDVSENQPVLVAVKMLRADANK---------------------------   60 (296)
T ss_pred             EEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCH---------------------------
T ss_conf             88479703878588982883754112221123456777548999996676896---------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC---CCCEEEEECCCCCCCCHHHHHH-HH----
Q ss_conf             179999999887888655999988987202446776643000010221---7833530024786324267733-20----
Q gi|254780623|r  188 FSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT---ERDVITMEWIDGVKISDTEKLR-AC----  259 (517)
Q Consensus       188 ~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s---t~~VLvmE~i~G~~i~d~~~l~-~~----  259 (517)
                                  ...-+|.+|++.+.+++.     +.|.  +.| ..|   ..-.|||||++|-.+.+.-.-. ..    
T Consensus        61 ------------~~~~~f~~Ei~il~~l~H-----pNIV--~~~-g~~~~~~~~~lV~Ey~~~GsL~~~L~~~~~~~~~~  120 (296)
T cd05095          61 ------------NARNDFLKEIKIMSRLKD-----PNII--RLL-AVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAA  120 (296)
T ss_pred             ------------HHHHHHHHHHHHHHHCCC-----CCCC--CEE-EEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCC
T ss_conf             ------------799999999999986899-----4989--798-99988995799998169995999998537554432


Q ss_pred             -----CCC---HHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             -----022---5689999999999989744866178786228980289535743403121698
Q gi|254780623|r  260 -----GHD---LERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       260 -----~~d---~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                           ..+   +-.++..++... .-+-..++.|.|..|.||+++.++.+-+-|||+...+..
T Consensus       121 ~~~~~~l~~~~~~~i~~qia~gl-~yLh~~~ivHrDlK~~NILl~~~~~~Ki~DFGls~~~~~  182 (296)
T cd05095         121 KSDVPTVSYSNLIFMASQIASGM-KYLSSLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYS  182 (296)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHH-HHHHCCCEECCCCCCCEEEECCCCCEEEEECCCCCCCCC
T ss_conf             22455568999999999999999-987119877575661337987999899984535513678


No 45 
>cd07841 STKc_CDK7 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7 subfamily. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates 
Probab=98.87  E-value=7.1e-09  Score=87.94  Aligned_cols=140  Identities=21%  Similarity=0.276  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-|++||-|+|++|+-+.  +|+.||||+.+.+-...-...                             .....     
T Consensus         6 ~~iG~G~fg~V~~~~~~~--~~~~vAiK~i~~~~~~~~~~~-----------------------------~~~~~-----   49 (298)
T cd07841           6 KKLGEGTYAVVYKARDKE--TGRIVAIKKIKLGERKEAKDG-----------------------------INFTA-----   49 (298)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHHHHHHHHH-----------------------------HHHHH-----
T ss_conf             495327283999999899--998999999973143456677-----------------------------67899-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH---
Q ss_conf             59999889872024467766430000102217--8335300247863242677332002256899999999999897---
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL---  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~---  279 (517)
                       .+|.+.+..+..     +.  |-+.|.-+.+  .-.|||||++|- +.+.  ++..+   ..+.+.-+..|++|++   
T Consensus        50 -~rEi~~l~~l~h-----pn--Iv~~~~~~~~~~~~~iVmEy~~g~-L~~~--l~~~~---~~l~e~~~~~~~~Qil~al  115 (298)
T cd07841          50 -LREIKLLQELKH-----PN--IIGLLDVFGHKSNINLVFEFMETD-LEKV--IKDKS---IVLTPADIKSYMLMTLRGL  115 (298)
T ss_pred             -HHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCC-HHHH--HHHCC---CCCCHHHHHHHHHHHHHHH
T ss_conf             -999999997599-----99--664999998899999999578998-8999--87238---8999999999999999999


Q ss_pred             ----HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             ----44866178786228980289535743403121698
Q gi|254780623|r  280 ----RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       280 ----~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                          ..|+.|-|.-|.||+++.+|++-+.|||+...+..
T Consensus       116 ~ylH~~~iiHRDIKPeNILl~~~g~vKl~DFG~a~~~~~  154 (298)
T cd07841         116 EYLHSNWILHRDLKPNNLLIASDGVLKLADFGLARSFGS  154 (298)
T ss_pred             HHHHHCCEEECCCCHHHEEECCCCCEEEEECCEEEECCC
T ss_conf             999978924031577885687899989836332356578


No 46 
>cd05079 PTKc_Jak1_rpt2 Catalytic (Repeat 2) Domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a
Probab=98.86  E-value=2.2e-08  Score=84.20  Aligned_cols=147  Identities=16%  Similarity=0.204  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHHEE--CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021--2888723687640310468877778899987532114685433469179999999887888
Q gi|254780623|r  125 DPIAAASIAQVHPAVVH--DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME  202 (517)
Q Consensus       125 ePlasASiaQVh~A~l~--d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E  202 (517)
                      +.|++|+-|.||+|+++  +..+|+.||||+.++...+.                             ...         
T Consensus        10 ~~iG~G~fG~V~~~~~~~~~~~~~~~vAvK~l~~~~~~~-----------------------------~~~---------   51 (284)
T cd05079          10 RDLGEGHFGKVELCRYDPEGDNTGELVAVKSLKPENGGE-----------------------------HIA---------   51 (284)
T ss_pred             EEECCCCCEEEEEEEEECCCCCCCCEEEEEEECCCCCHH-----------------------------HHH---------
T ss_conf             596137083999858864427779399999984212867-----------------------------899---------


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC-EEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHHHHHHHH
Q ss_conf             655999988987202446776643000010221783-353002478632426773320022568---9999999999989
Q gi|254780623|r  203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD-VITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQSFLLHT  278 (517)
Q Consensus       203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~-VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~~~~~qi  278 (517)
                       +|.+|++.+..++.    ..-|.+-.+..+-++.. .|||||++|-++.+.-.-.....+...   ++..++.. +.-+
T Consensus        52 -~~~~E~~il~~l~H----pNIv~~~g~~~~~~~~~~~lVmEy~~~GsL~~~l~~~~~~l~~~~~~~~~~qia~g-l~yL  125 (284)
T cd05079          52 -DLKKEIEILRNLYH----ENIVKYKGICTEEGGNGIKLIMEFLPSGSLKEYLPRNKNKINLKQLLKYAVQICKG-MDYL  125 (284)
T ss_pred             -HHHHHHHHHHHCCC----CCCCEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHH
T ss_conf             -99999999986799----88840865783379977999999389994899986346899999999999999999-9987


Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             7448661787862289802895357434031216989
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      -..|+.|.|.-|.||+++.++.+-+-|||+...+...
T Consensus       126 H~~~ivHrDlK~~NiLl~~~~~~Kl~DFGla~~~~~~  162 (284)
T cd05079         126 GSRQYVHRDLAARNVLVENERMVKIGDFGLTKAIKTD  162 (284)
T ss_pred             HHCCEECCCCCCCEEEECCCCCEEEEECCCCEECCCC
T ss_conf             0398364777622389879997899736665465789


No 47 
>cd05085 PTKc_Fer Catalytic Domain of the Protein Tyrosine Kinase, Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c
Probab=98.86  E-value=1.3e-08  Score=85.92  Aligned_cols=138  Identities=16%  Similarity=0.192  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67788886555502128887236876403104688777788999875321146854334691799999998878886559
Q gi|254780623|r  127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR  206 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~  206 (517)
                      |++|+-|+||+|++++   +..||||+.+....+..+                                       ..|.
T Consensus         3 iG~G~fg~Vy~g~~~~---~~~VAvK~~~~~~~~~~~---------------------------------------~~f~   40 (250)
T cd05085           3 LGKGNFGEVFKGTLKD---KTPVAVKTCKEDLPQELK---------------------------------------IKFL   40 (250)
T ss_pred             EEECCCCEEEEEEECC---CCEEEEEEECCCCCHHHH---------------------------------------HHHH
T ss_conf             1008993899999889---999999998943786899---------------------------------------9999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHHHCCCHHHH---HHHHHHHHHHHHHHC
Q ss_conf             999889872024467766430000102217--833530024786324267733200225689---999999999989744
Q gi|254780623|r  207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRACGHDLERL---SVTLVQSFLLHTLRD  281 (517)
Q Consensus       207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~~~~d~~~l---a~~l~~~~~~qi~~~  281 (517)
                      +|++.+.+++.     |.|  -+.|.-..+  .-.|||||++|-.+.+.-.-.....+.+.+   +..++.+ +.-+-..
T Consensus        41 ~E~~il~~l~H-----pnI--v~l~g~~~~~~~~~iv~Ey~~~g~L~~~l~~~~~~l~~~~~~~~~~~ia~g-l~yLH~~  112 (250)
T cd05085          41 SEARILKQYDH-----PNI--VKLIGVCTQRQPIYIVMELVPGGDFLSFLRKKKDELKTKQLVKFALDAAAG-MAYLESK  112 (250)
T ss_pred             HHHHHHHHCCC-----CCE--EEEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHHHC
T ss_conf             99999986799-----998--319999988998999997589982899997468999999999999999999-9998429


Q ss_pred             CEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             866178786228980289535743403121698
Q gi|254780623|r  282 GFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       282 GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      |+.|.|.-|.||+++.++.+-+-|||+....+.
T Consensus       113 ~iiHrDlK~~NiLv~~~~~~Kl~DFGls~~~~~  145 (250)
T cd05085         113 NCIHRDLAARNCLVGENNVLKISDFGMSRQEDD  145 (250)
T ss_pred             CCCCCCCCCCCEEECCCCCEEEEECCCCEECCC
T ss_conf             964475374636688999689996677887799


No 48 
>cd06658 STKc_PAK5 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is 
Probab=98.86  E-value=1.5e-08  Score=85.44  Aligned_cols=163  Identities=19%  Similarity=0.249  Sum_probs=100.1

Q ss_pred             CHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             98999998754047-88999999867666778888655550212888723687640310468877778899987532114
Q gi|254780623|r  100 PTNTARLSVASALK-APIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEK  178 (517)
Q Consensus       100 ~~~~v~~~ie~elg-~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~  178 (517)
                      +-++-+..++.-++ .++.+.|..++ -|+.||-|.||+|+-+.  +|+.||||+..-                    ..
T Consensus         3 ~~~~~~~~~~~~~~~gd~~~~~~~l~-~IG~G~fg~V~~a~~~~--tg~~vAiK~i~~--------------------~~   59 (292)
T cd06658           3 SHEQFRAALQLVVSPGDPREYLDSFI-KIGEGSTGIVCIATEKH--TGKQVAVKKMDL--------------------RK   59 (292)
T ss_pred             CHHHHHHHHHHHCCCCCHHHHCCCCE-EECCCCCCEEEEEEECC--CCCEEEEEEEEC--------------------CC
T ss_conf             77999999983549999489674077-96227781999999899--998999999851--------------------66


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHH
Q ss_conf             685433469179999999887888655999988987202446776643000010221783--353002478632426773
Q gi|254780623|r  179 LLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKL  256 (517)
Q Consensus       179 ~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l  256 (517)
                             ..       -...      +.+|...+..+..     |.|  =+.|.-+.+.+  .+||||++|-.+.++-  
T Consensus        60 -------~~-------~~~~------~~~Ei~il~~l~H-----pnI--V~l~~~~~~~~~~yiVmE~~~gG~L~~~i--  110 (292)
T cd06658          60 -------QQ-------RREL------LFNEVVIMRDYHH-----ENV--VDMYNSYLVGDELWVVMEFLEGGALTDIV--  110 (292)
T ss_pred             -------CC-------HHHH------HHHHHHHHHHCCC-----CCC--CEEEEEEEECCEEEEEEECCCCCCHHHHH--
T ss_conf             -------32-------3999------9999999986799-----898--91999999899999999898999177898--


Q ss_pred             HHHCCCHHHH---HHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             3200225689---9999999999897448661787862289802895357434031216989
Q gi|254780623|r  257 RACGHDLERL---SVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       257 ~~~~~d~~~l---a~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      .....+-+.+   +..++.+ +.-+-..|+.|-|.-|.||+++.+|++-+.|||+...++..
T Consensus       111 ~~~~l~e~~~~~i~~qil~a-L~yLH~~~IiHRDlKpeNILl~~~g~iKL~DFGla~~~~~~  171 (292)
T cd06658         111 THTRMNEEQIATVCLSVLRA-LSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKE  171 (292)
T ss_pred             HCCCCCHHHHHHHHHHHHHH-HHHHHHCCEEECCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf             72899999999999999999-99999789353637715367868998999726275565777


No 49 
>cd06628 STKc_MAPKKK_Byr2_like Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important
Probab=98.85  E-value=3.7e-09  Score=90.18  Aligned_cols=147  Identities=20%  Similarity=0.274  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             66778888655550212888723687640310468877778899987532114685433469179999999887888655
Q gi|254780623|r  126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL  205 (517)
Q Consensus       126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~  205 (517)
                      =|+.||-|.||+|+-+.  +|+.||||+.+-.-.                         ..+..+...++.+      .+
T Consensus         7 ~lG~G~fg~Vy~~~~~~--~g~~vAiK~~~~~~~-------------------------~~~~~~~~~~~~~------~~   53 (267)
T cd06628           7 LIGSGSFGSVYLGMNAH--SGELMAVKQVEIPSN-------------------------SIGVQDRKRKMLD------AL   53 (267)
T ss_pred             EEEECCCEEEEEEEECC--CCCEEEEEEEEECCC-------------------------CCHHHHHHHHHHH------HH
T ss_conf             88207481999999889--998999999950455-------------------------5026788999999------99


Q ss_pred             HHHHHHHHHHHCCCCCCCCC-CCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH------
Q ss_conf             99998898720244677664-30000102217833530024786324267733200225689999999999989------
Q gi|254780623|r  206 RLEAAAFSEMAENTVKDQGF-RVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT------  278 (517)
Q Consensus       206 ~~Ea~n~~~~~~~~~~~~~v-~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi------  278 (517)
                      .+|+..+.+++.     |.| ..=.++. -...-.++|||++|-.+.+.-  +..+    .+.+..+..|+.|+      
T Consensus        54 ~~E~~il~~l~H-----pnIv~~~~~~~-~~~~~~iv~Ey~~gg~L~~~l--~~~~----~l~e~~~~~~~~qil~gL~y  121 (267)
T cd06628          54 QREINLLKELHH-----ENIVQYLGSSQ-DAGHLNIFLEYVPGGSVAALL--NNYG----AFEESLVRNFVRQILKGLNY  121 (267)
T ss_pred             HHHHHHHHHCCC-----CCCCCEEEEEE-ECCEEEEEEEECCCCCHHHHH--HHCC----CCCHHHHHHHHHHHHHHHHH
T ss_conf             999999987799-----89992999997-899999999903969699999--8659----99999999999999999999


Q ss_pred             -HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHH
Q ss_conf             -744866178786228980289535743403121698999
Q gi|254780623|r  279 -LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRER  317 (517)
Q Consensus       279 -~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r  317 (517)
                       -..|+.|-|.-|+||+++.+|.+-+.|||+...+++...
T Consensus       122 LH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~  161 (267)
T cd06628         122 LHNRGIIHRDIKGANILVDNKGGIKISDFGISKKLEANSL  161 (267)
T ss_pred             HHHCCCEEEECCHHHEEECCCCCEEEEECCCCEECCCCCC
T ss_conf             9868904321677776688999899995778747568863


No 50 
>cd05067 PTKc_Lck_Blk Catalytic Domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk. Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr
Probab=98.85  E-value=1.6e-08  Score=85.24  Aligned_cols=144  Identities=15%  Similarity=0.227  Sum_probs=92.0

Q ss_pred             HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99867--6667788886555502128887236876403104688777788999875321146854334691799999998
Q gi|254780623|r  120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ  197 (517)
Q Consensus       120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~  197 (517)
                      ++.++  +.|++|+.|.||+|.+++   +++||||+.+++-.                           +.         
T Consensus         5 ~~~~~~~~~iG~G~fg~Vy~~~~~~---~~~VAvK~l~~~~~---------------------------~~---------   45 (260)
T cd05067           5 RETLKLVKKLGAGQFGEVWMGYYNN---HTKVAIKSLKEGTM---------------------------SP---------   45 (260)
T ss_pred             HHHEEEEEEEECCCCCEEEEEEECC---CCEEEEEEECCCCC---------------------------CH---------
T ss_conf             7997973598318785999999889---98999999896789---------------------------99---------


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCH-HCCCCEEEEECCCCCCCCHHHHHHH-HCCCHH---HHHHHHHH
Q ss_conf             878886559999889872024467766430000102-2178335300247863242677332-002256---89999999
Q gi|254780623|r  198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWN-RTERDVITMEWIDGVKISDTEKLRA-CGHDLE---RLSVTLVQ  272 (517)
Q Consensus       198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~-~st~~VLvmE~i~G~~i~d~~~l~~-~~~d~~---~la~~l~~  272 (517)
                           -.|.+|++.+.+++.     |.|.  +.|.- ...+-.|||||++|-.+.+.-.... ......   .++..+++
T Consensus        46 -----~~f~~E~~il~~l~H-----pnIV--~~~g~~~~~~~~lv~Ey~~~G~L~~~l~~~~~~~l~~~~~~~i~~qia~  113 (260)
T cd05067          46 -----EAFLAEANLMKQLQH-----ERLV--RLYAVVTQEPIYIVTEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAE  113 (260)
T ss_pred             -----HHHHHHHHHHHHCCC-----CCCC--CEEEEEECCCEEEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             -----999999999986899-----7898--1999995696399999069988999983067899999999999999999


Q ss_pred             HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             9999897448661787862289802895357434031216989
Q gi|254780623|r  273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      + +.-+-..|+.|.|.-|.||+++.++.+.+-|||+...++..
T Consensus       114 g-l~yLH~~~ivHrDlKp~NILl~~~~~~Kl~DFGls~~~~~~  155 (260)
T cd05067         114 G-MAYIERKNYIHRDLRAANILVSETLCCKIADFGLARIIEDN  155 (260)
T ss_pred             H-HHHHHHCCEECCCCCCCEEEECCCCCEEEEECCCCEECCCC
T ss_conf             9-99997489760546621189869998897103550673688


No 51 
>smart00221 STYKc Protein kinase; unclassified specificity. Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.
Probab=98.85  E-value=1.3e-08  Score=85.93  Aligned_cols=143  Identities=15%  Similarity=0.193  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.++-|.||+|+...  +|+.||||+.++.-..                                 +.      .-.
T Consensus         5 ~~iG~G~fg~Vy~~~~~~--~~~~vAiK~i~~~~~~---------------------------------~~------~~~   43 (225)
T smart00221        5 KKLGEGAFGKVYLARDKG--TGELVAVKVLKKEKTE---------------------------------KQ------REE   43 (225)
T ss_pred             EEEECCCCCEEEEEEECC--CCCEEEEEEEEHHCCH---------------------------------HH------HHH
T ss_conf             998328892999999999--9989999998354098---------------------------------89------999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCH---HHHHHHHHHHHHHHHH
Q ss_conf             599998898720244677664300001022178--33530024786324267733200225---6899999999999897
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDL---ERLSVTLVQSFLLHTL  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~---~~la~~l~~~~~~qi~  279 (517)
                      +.+|++.+.+++.     |.  |-++|.-+.++  -.+||||++|-.+.+.-.-.....+.   ..++..++.+ +.-+-
T Consensus        44 ~~~E~~il~~l~h-----pn--Iv~~~~~~~~~~~~~ivmEy~~~G~L~~~l~~~~~~~~~~~~~~~~~qi~~g-l~~lH  115 (225)
T smart00221       44 FLREIRILKKLKH-----PN--IVKLYGVFEDPEPLYLVMEYCEGGDLFDYLRKKGGKLSEEEARFYLRQILEA-LEYLH  115 (225)
T ss_pred             HHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHH
T ss_conf             9999999997799-----89--9818779878999999998779990899999769999999999999999999-99999


Q ss_pred             HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHH
Q ss_conf             4486617878622898028953574340312169899
Q gi|254780623|r  280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRE  316 (517)
Q Consensus       280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~  316 (517)
                      ..|+.|-|.-|.||+++.+|.+-+.|||+...+++..
T Consensus       116 ~~~iiHrDiKp~NIl~~~~~~~kl~DFG~a~~~~~~~  152 (225)
T smart00221      116 SLGIVHRDLKPENILLGMDGLVKLADFGLARFIHRDL  152 (225)
T ss_pred             HCCEEECCCCHHHEEECCCCCEEEEECCCCEECCCCC
T ss_conf             7996745277788799899989999667777867897


No 52 
>cd05096 PTKc_DDR1 Catalytic Domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin domain receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k
Probab=98.85  E-value=2.3e-08  Score=83.99  Aligned_cols=144  Identities=19%  Similarity=0.239  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHHHHHHEECCC--------------CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             86766677888865555021288--------------8723687640310468877778899987532114685433469
Q gi|254780623|r  122 EFDDPIAAASIAQVHPAVVHDIN--------------GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLC  187 (517)
Q Consensus       122 ~fdePlasASiaQVh~A~l~d~~--------------~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~  187 (517)
                      .|.+.|++|+-|+||+|++++.+              .+..||||+.+++..+.                          
T Consensus         8 ~~~~~iG~G~FG~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~VAvK~l~~~~~~~--------------------------   61 (304)
T cd05096           8 LFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKN--------------------------   61 (304)
T ss_pred             EEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCHH--------------------------
T ss_conf             881088138587999989889864420002222346872689999977657867--------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHHH------
Q ss_conf             17999999988788865599998898720244677664300001022--1783353002478632426773320------
Q gi|254780623|r  188 FSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRAC------  259 (517)
Q Consensus       188 ~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~~------  259 (517)
                                   ..-+|.+|++.+.+++.     |.  |=+.|.-.  ...-.|||||++|-.+.+.-.-+..      
T Consensus        62 -------------~~~~f~~Ei~il~~l~H-----pN--IV~l~G~~~~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~  121 (304)
T cd05096          62 -------------ARNDFLKEVKILSRLKD-----PN--IIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEEN  121 (304)
T ss_pred             -------------HHHHHHHHHHHHHHCCC-----CC--EEEEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCCC
T ss_conf             -------------99999999999986699-----99--74289999889998999974789958999976344310034


Q ss_pred             ------------CCC---HHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC
Q ss_conf             ------------022---56899999999999897448661787862289802895357434031216
Q gi|254780623|r  260 ------------GHD---LERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL  312 (517)
Q Consensus       260 ------------~~d---~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l  312 (517)
                                  ..+   +-.+|..++...- =+-..++.|.|.-|.||+++.++.+-+-|||+...+
T Consensus       122 ~~~~~~~~~~~~~l~~~~~l~ia~qia~gl~-yLh~~~iiHrDLK~~NILl~~~~~~Kl~DFGlsr~~  188 (304)
T cd05096         122 GNDAVPPAHCLPAISYSSLLHVALQIASGMK-YLSSLNFVHRDLATRNCLVGENLTIKIADFGMSRNL  188 (304)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHCCCEEECCCCHHCEEECCCCCEEEECCCCCEEC
T ss_conf             5544453334455789999999999999878-987299882756652068889998999515055056


No 53 
>cd05065 PTKc_EphR_B Catalytic Domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr
Probab=98.85  E-value=1.7e-08  Score=85.01  Aligned_cols=147  Identities=14%  Similarity=0.165  Sum_probs=94.7

Q ss_pred             HHHH--HHHHHHHHHHHHHHHEECC-CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9867--6667788886555502128-887236876403104688777788999875321146854334691799999998
Q gi|254780623|r  121 CEFD--DPIAAASIAQVHPAVVHDI-NGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ  197 (517)
Q Consensus       121 ~~fd--ePlasASiaQVh~A~l~d~-~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~  197 (517)
                      ++|+  +-|++|+-|+||+|+++.. ..+..||||+.+.+..+.                                    
T Consensus         4 ~~~~l~~~iG~G~fG~Vy~g~~~~~g~~~~~VAvK~l~~~~~~~------------------------------------   47 (269)
T cd05065           4 SCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEK------------------------------------   47 (269)
T ss_pred             HHCEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCHH------------------------------------
T ss_conf             99298889921778399999993799650799999988457979------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC---CCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHH
Q ss_conf             87888655999988987202446776643000010221---783353002478632426773320022568---999999
Q gi|254780623|r  198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT---ERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLV  271 (517)
Q Consensus       198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s---t~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~  271 (517)
                         ..-+|.+|++.+.+++.     |.|  -+.|- +|   ++-.|||||++|-++.+.-.......+...   ++..++
T Consensus        48 ---~~~~f~~E~~il~~l~H-----pNI--v~~~g-~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~~ia  116 (269)
T cd05065          48 ---QRRDFLSEASIMGQFDH-----PNI--IHLEG-VVTKSRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLRGIA  116 (269)
T ss_pred             ---HHHHHHHHHHHHHHCCC-----CCC--CEEEE-EEEECCEEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             ---99999999999986899-----788--71999-99889988999991899918999973679999999999999999


Q ss_pred             HHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             99999897448661787862289802895357434031216989
Q gi|254780623|r  272 QSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       272 ~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      . -+.-+-..|++|.|.-|.|++++.++.+-+-|||+...+.+.
T Consensus       117 ~-gl~yLH~~~iiHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~  159 (269)
T cd05065         117 A-GMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDD  159 (269)
T ss_pred             H-HHHHHHHCCEECCCCCCCCEEECCCCCEEEEECCCCEECCCC
T ss_conf             9-999986698741667703066779996998335356776678


No 54 
>cd05074 PTKc_Tyro3 Catalytic Domain of the Protein Tyrosine Kinase, Tyro3. Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac
Probab=98.85  E-value=1.4e-08  Score=85.74  Aligned_cols=145  Identities=15%  Similarity=0.291  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHHHHEE-CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             766677888865555021-2888723687640310468877778899987532114685433469179999999887888
Q gi|254780623|r  124 DDPIAAASIAQVHPAVVH-DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME  202 (517)
Q Consensus       124 dePlasASiaQVh~A~l~-d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E  202 (517)
                      .+-|+.|+-|+||+|.++ +.++|++||||+.+++....                            .-.+         
T Consensus         4 ~~~iG~G~fG~Vy~~~~~~~~~~~~~vAvK~l~~~~~~~----------------------------~~~~---------   46 (273)
T cd05074           4 GRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSS----------------------------SDIE---------   46 (273)
T ss_pred             CCEEECCCCEEEEEEEEECCCCCCEEEEEEEECHHHCCH----------------------------HHHH---------
T ss_conf             878965888199999994568877599999988120887----------------------------8999---------


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHCC----CHHCCC----CEEEEECCCCCCCCHHHHHHHHC-----CCHHH---H
Q ss_conf             65599998898720244677664300001----022178----33530024786324267733200-----22568---9
Q gi|254780623|r  203 MDLRLEAAAFSEMAENTVKDQGFRVPKID----WNRTER----DVITMEWIDGVKISDTEKLRACG-----HDLER---L  266 (517)
Q Consensus       203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy----~~~st~----~VLvmE~i~G~~i~d~~~l~~~~-----~d~~~---l  266 (517)
                       .|.+|++-+.+++.     |.|.  +.|    ..-+..    -.++|||++|-.+.+.-.....+     .+.+.   +
T Consensus        47 -~~~~E~~~l~~l~H-----pnIv--~l~g~~~~~~~~~~~~~~~~v~e~~~~G~L~~~l~~~~~~~~~~~l~~~~~~~i  118 (273)
T cd05074          47 -EFLREAACMKEFDH-----PNVI--KLIGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRF  118 (273)
T ss_pred             -HHHHHHHHHHHCCC-----CCCC--EEEEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf             -99999999996799-----9833--189999844666766510899983799888999876103577888899999999


Q ss_pred             HHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             999999999989744866178786228980289535743403121698
Q gi|254780623|r  267 SVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       267 a~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      +..++.+ +.-+-..|+.|.|.-|.||++++++++.+.|||+...+.+
T Consensus       119 ~~qia~g-l~yLH~~~iiHRDlKp~NiLl~~~~~~kl~DFGls~~~~~  165 (273)
T cd05074         119 MIDIASG-MEYLSSKNFIHRDLAARNCMLNENMTVCVADFGLSKKIYS  165 (273)
T ss_pred             HHHHHHH-HHHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCEECCC
T ss_conf             9999999-9999858936255656558998999789984687627789


No 55 
>cd06612 STKc_MST1_2 Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activ
Probab=98.84  E-value=4e-08  Score=82.15  Aligned_cols=139  Identities=18%  Similarity=0.255  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-||.|+-|.||+|+-+.  +|+.||||+.+-.      .                      +.        .      +
T Consensus         9 ~~IG~G~fg~V~~~~~~~--~~~~~AiK~i~~~------~----------------------~~--------~------~   44 (256)
T cd06612           9 EKLGEGSYGSVYKAIHKE--TGQVVAIKVVPVE------E----------------------DL--------Q------E   44 (256)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECCC------C----------------------CH--------H------H
T ss_conf             598207691999999989--9989999998654------5----------------------89--------9------9


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCC---HHHHHHHHHHHHHHHHH
Q ss_conf             599998898720244677664300001022178--3353002478632426773320022---56899999999999897
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHD---LERLSVTLVQSFLLHTL  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d---~~~la~~l~~~~~~qi~  279 (517)
                      +.+|++.+..+..     |  .|-+.|.-+.++  -.|||||++|-.+.+.-.......+   ...++..++.+ +..+-
T Consensus        45 ~~~E~~il~~~~H-----p--nIv~~~~~~~~~~~~~lvmEy~~~g~L~~~l~~~~~~~~e~~v~~~~~qi~~a-l~ylH  116 (256)
T cd06612          45 IIKEISILKQCDS-----P--YIVKYYGSYFKNTDLWIVMEYCGAGSVSDIMKITNKTLTEEEIAAILYQTLKG-LEYLH  116 (256)
T ss_pred             HHHHHHHHHHCCC-----C--CCCEEEEEEEECCEEEEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH-HHHHH
T ss_conf             9999999986799-----9--99809999998999999997899993999999848999999999999999999-99999


Q ss_pred             HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             448661787862289802895357434031216989
Q gi|254780623|r  280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      ..|+.|-|.-|.||+++.+|.+-+.|||+.+.++..
T Consensus       117 ~~~iiHRDlKp~NILl~~~~~~Ki~DFGls~~~~~~  152 (256)
T cd06612         117 SNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDT  152 (256)
T ss_pred             HCCEEEEECCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf             899366135889955889999999427686185788


No 56 
>cd06606 STKc_MAPKKK Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included
Probab=98.84  E-value=1.3e-08  Score=85.80  Aligned_cols=142  Identities=20%  Similarity=0.270  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.||.|+-|+||+|+-++  +|+.||||+.+-.-...                            .-.+          .
T Consensus         6 ~~IG~G~fg~V~~~~~~~--~~~~vAiK~i~~~~~~~----------------------------~~~~----------~   45 (259)
T cd06606           6 KLLGRGSFGSVYLALSKD--TGELVAVKSVELSSDSE----------------------------EELE----------S   45 (259)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECHHCCCH----------------------------HHHH----------H
T ss_conf             796318992999999999--99899999984310898----------------------------9999----------9


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCH--HCCCHHCCCCEEEEECCCCCCCCHHHHHHHH-CCCH---HHHHHHHHHHHHHHH
Q ss_conf             599998898720244677664300--0010221783353002478632426773320-0225---689999999999989
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVP--KIDWNRTERDVITMEWIDGVKISDTEKLRAC-GHDL---ERLSVTLVQSFLLHT  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP--~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~-~~d~---~~la~~l~~~~~~qi  278 (517)
                      +.+|.+.+.+++     .|.| |+  ..+.+-...-.|||||++|-.+.+.-  +.. ..+.   ..++..++.+. .-+
T Consensus        46 ~~~E~~~l~~l~-----hpnI-v~~~~~~~~~~~~~~lvmEy~~~g~L~~~i--~~~~~~~e~~~~~~~~qi~~al-~yl  116 (259)
T cd06606          46 LEREIRILSKLQ-----HPNI-VRYYGCEVTEENTLNIFMEYVSGGSLASLL--KKFGKLPEPVIRRYTRQILEGL-AYL  116 (259)
T ss_pred             HHHHHHHHHHCC-----CCCE-EEEEEEEEECCCEEEEEEECCCCCCHHHHH--HHCCCCCHHHHHHHHHHHHHHH-HHH
T ss_conf             999999998779-----9898-079899994798899999789998899999--8659999999999999999999-999


Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             7448661787862289802895357434031216989
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      -..|+.|-|.-|.||+++.+|.+-+.|||+...++..
T Consensus       117 H~~~iiHrDlKp~NILl~~~~~iKl~DFGla~~~~~~  153 (259)
T cd06606         117 HSNGIVHRDIKGANILLDSDGVVKLADFGCAKRLASI  153 (259)
T ss_pred             HHCCEEECCCCHHHEEECCCCCEEEEECCCEEECCCC
T ss_conf             9799984403889969878998999987824896777


No 57 
>cd05033 PTKc_EphR Catalytic Domain of Ephrin Receptor Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment
Probab=98.84  E-value=2.9e-08  Score=83.19  Aligned_cols=146  Identities=15%  Similarity=0.241  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHHHHHHEECC-CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             8676667788886555502128-887236876403104688777788999875321146854334691799999998878
Q gi|254780623|r  122 EFDDPIAAASIAQVHPAVVHDI-NGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTK  200 (517)
Q Consensus       122 ~fdePlasASiaQVh~A~l~d~-~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~  200 (517)
                      +|++-|++|+-|.||+|+++.. ..+..||||+.+++..+                                       .
T Consensus         7 ~~~~~IG~G~fg~Vy~~~~~~~~~~~~~vAvK~l~~~~~~---------------------------------------~   47 (266)
T cd05033           7 TIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSD---------------------------------------K   47 (266)
T ss_pred             EEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCH---------------------------------------H
T ss_conf             9988993076839999999279965079999998865797---------------------------------------8


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCH--HCCCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHHHHH
Q ss_conf             886559999889872024467766430000102--21783353002478632426773320022568---9999999999
Q gi|254780623|r  201 MEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWN--RTERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQSFL  275 (517)
Q Consensus       201 ~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~--~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~~~~  275 (517)
                      .+.+|.+|++.+.+++.     |.|  -+.|.-  -.+.-.|||||++|-++.+.-.-.....+...   ++..++.+ +
T Consensus        48 ~~~~f~~E~~~l~~l~H-----pnI--v~l~g~~~~~~~~~lV~Ey~~~GsL~~~L~~~~~~l~~~~~~~i~~~ia~g-l  119 (266)
T cd05033          48 QRLDFLTEASIMGQFDH-----PNI--IRLEGVVTKSRPVMIITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASG-M  119 (266)
T ss_pred             HHHHHHHHHHHHHHCCC-----CCE--EEEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-H
T ss_conf             99999999999984899-----788--119999968999999998589996999997278999999999999999999-9


Q ss_pred             HHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             989744866178786228980289535743403121698
Q gi|254780623|r  276 LHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       276 ~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      .-+-..|+.|.|.-|.||+++.++.+-+-|||+...++.
T Consensus       120 ~yLH~~~ivHrDlK~~NILl~~~~~~Kl~DFGls~~~~~  158 (266)
T cd05033         120 KYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLED  158 (266)
T ss_pred             HHHHHCCEECCCCCCCEEEECCCCCEEEEECCCCEECCC
T ss_conf             988558887055672137787999889965677757778


No 58 
>cd06635 STKc_TAO1 Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an im
Probab=98.83  E-value=8.2e-08  Score=79.70  Aligned_cols=152  Identities=16%  Similarity=0.148  Sum_probs=90.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf             89999998676667788886555502128887236876403104688777788999875321146854334691799999
Q gi|254780623|r  115 PIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRA  194 (517)
Q Consensus       115 ~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e  194 (517)
                      +++..|..+ +-|++||-|.||+|+-+  .+|+.||||+.+..-.                          .+. +    
T Consensus        22 d~~k~y~~l-~~IG~G~fG~Vy~a~~~--~tg~~vAiK~i~~~~~--------------------------~~~-~----   67 (317)
T cd06635          22 DPEKLFTDL-REIGHGSFGAVYFARDV--RTNEVVAIKKMSYSGK--------------------------QSN-E----   67 (317)
T ss_pred             CHHHCCEEE-EEECCCCCEEEEEEEEC--CCCCEEEEEEECHHHC--------------------------CCH-H----
T ss_conf             956638710-89513818299999988--9997999999863351--------------------------687-9----


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCC---HHHHHHH
Q ss_conf             9988788865599998898720244677664300001022178--3353002478632426773320022---5689999
Q gi|254780623|r  195 LEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHD---LERLSVT  269 (517)
Q Consensus       195 ~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d---~~~la~~  269 (517)
                      ..      -++.+|.+-+.+++.     |.|.  +.|.-+.++  -.|||||+.|-.. +.-........   ...++..
T Consensus        68 ~~------~~~~~Ei~il~~l~H-----pnIV--~~~~~~~~~~~~~ivmEy~~G~~~-~l~~~~~~~l~e~~~~~i~~q  133 (317)
T cd06635          68 KW------QDIIKEVKFLQRIKH-----PNSI--EYKGCYLREHTAWLVMEYCLGSAS-DLLEVHKKPLQEVEIAAITHG  133 (317)
T ss_pred             HH------HHHHHHHHHHHHCCC-----CCCC--EEEEEEEECCEEEEEEEECCCCHH-HHHHHHCCCCCHHHHHHHHHH
T ss_conf             99------999999999997799-----8998--099999989988999995289858-999982699999999999999


Q ss_pred             HHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             9999999897448661787862289802895357434031216989
Q gi|254780623|r  270 LVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       270 l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      ++.+ +.-+-..|+.|-|.-|.||+++.+|.+-+.|||+...+++.
T Consensus       134 il~a-L~ylH~~~IiHRDLKp~NILl~~~~~vKl~DFG~a~~~~~~  178 (317)
T cd06635         134 ALQG-LAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASIASPA  178 (317)
T ss_pred             HHHH-HHHHHHCCCEEEECCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf             9999-99999789333225488867889999899945687443799


No 59 
>cd06650 PKc_MEK1 MEK1 (MAPKK1 or MKK1):  Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase
Probab=98.83  E-value=4.5e-09  Score=89.48  Aligned_cols=142  Identities=21%  Similarity=0.317  Sum_probs=86.3

Q ss_pred             HHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             867--666778888655550212888723687640310468877778899987532114685433469179999999887
Q gi|254780623|r  122 EFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT  199 (517)
Q Consensus       122 ~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  199 (517)
                      .|+  +.|+.||-|.||+|+-+.  +|+.||+|+.+....                     +            .....+
T Consensus         6 dyeii~~IG~G~fG~Vy~a~~~~--tg~~vAiK~i~~~~~---------------------~------------~~~~~~   50 (333)
T cd06650           6 DFEKISELGAGNGGVVFKVSHKP--SGLIMARKLIHLEIK---------------------P------------AIRNQI   50 (333)
T ss_pred             CCEEEEEEECCCCEEEEEEEECC--CCCEEEEEEECHHHC---------------------H------------HHHHHH
T ss_conf             78880276038991999999889--995999999765428---------------------7------------899999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHH----HHHHHHH
Q ss_conf             88865599998898720244677664300001022178--33530024786324267733200225689----9999999
Q gi|254780623|r  200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERL----SVTLVQS  273 (517)
Q Consensus       200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~l----a~~l~~~  273 (517)
                      .      +|++-+.++..     |.  |-+.|.-+.++  -.|||||++|-.+.+.-  +..+.-....    +..++.+
T Consensus        51 ~------~Ei~il~~l~h-----pn--IV~~~~~~~~~~~~~ivmEy~~gg~L~~~l--~~~~~~~e~~~~~i~~qi~~g  115 (333)
T cd06650          51 I------RELQVLHECNS-----PY--IVGFYGAFYSDGEISICMEHMDGGSLDQVL--KKAGRIPEQILGKVSIAVIKG  115 (333)
T ss_pred             H------HHHHHHHHCCC-----CC--CCCEEEEEEECCEEEEEEECCCCCCHHHHH--HHCCCCCHHHHHHHHHHHHHH
T ss_conf             9------99999986799-----99--991989999899999999838999789999--754999999999999999999


Q ss_pred             HHHHH-HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             99989-744866178786228980289535743403121698
Q gi|254780623|r  274 FLLHT-LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       274 ~~~qi-~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      .- -+ -.+|+.|-|.-|.||+++.+|.+-+.|||+.+.+..
T Consensus       116 L~-ylH~~~~IiHRDIKP~NILi~~~g~vKL~DFGla~~~~~  156 (333)
T cd06650         116 LT-YLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID  156 (333)
T ss_pred             HH-HHHHHCCEEECCCCHHHEEECCCCCEEEEECCCCCCCCC
T ss_conf             99-998628872224663117998999899997888763554


No 60 
>cd05049 PTKc_Trk Catalytic Domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases. Protein Tyrosine Kinase (PTK) family; Tropomyosin related kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt
Probab=98.83  E-value=2e-08  Score=84.46  Aligned_cols=143  Identities=15%  Similarity=0.217  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHHHHEEC---CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             67666778888655550212---888723687640310468877778899987532114685433469179999999887
Q gi|254780623|r  123 FDDPIAAASIAQVHPAVVHD---INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT  199 (517)
Q Consensus       123 fdePlasASiaQVh~A~l~d---~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  199 (517)
                      |.+.|++|+-|.||+|++..   .+.++.||||+.++...+                                       
T Consensus         9 ~~~~iG~G~fG~Vy~g~~~~~~~~~~~~~VAvK~l~~~~~~---------------------------------------   49 (280)
T cd05049           9 LKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASN---------------------------------------   49 (280)
T ss_pred             EEEEEECCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCH---------------------------------------
T ss_conf             98699137586999999826754887889999998975786---------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC---CCCEEEEECCCCCCCCHHHHHH--------HH-----CCCH
Q ss_conf             888655999988987202446776643000010221---7833530024786324267733--------20-----0225
Q gi|254780623|r  200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT---ERDVITMEWIDGVKISDTEKLR--------AC-----GHDL  263 (517)
Q Consensus       200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s---t~~VLvmE~i~G~~i~d~~~l~--------~~-----~~d~  263 (517)
                      ..+-+|.+|++.+.+++.     |.|.  +.|. +|   ..-.|||||++|-.+.+.-..+        ..     ..+.
T Consensus        50 ~~~~~f~~E~~~l~~l~H-----pnIV--~l~g-~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~~~l~~  121 (280)
T cd05049          50 DARKDFEREAELLTNFQH-----ENIV--KFYG-VCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTL  121 (280)
T ss_pred             HHHHHHHHHHHHHHHCCC-----CCCC--CEEE-EEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCH
T ss_conf             899999999999987799-----8874--0788-9977997799998069991999998709751001235555777799


Q ss_pred             H---HHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             6---8999999999998974486617878622898028953574340312169
Q gi|254780623|r  264 E---RLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       264 ~---~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                      .   .++..++.+. .-+-..|+.|.|.-|.||+++.++.+-+-|||+...+.
T Consensus       122 ~~~~~i~~qia~gl-~yLH~~~ivHrDlK~~NiLl~~~~~~Kl~DFGls~~~~  173 (280)
T cd05049         122 SQLLQIAVQIASGM-VYLASQHFVHRDLATRNCLVGYDLVVKIGDFGMSRDVY  173 (280)
T ss_pred             HHHHHHHHHHHHHH-HHHHHCCEECCCCCCCEEEECCCCCEEEEECCCCCCCC
T ss_conf             99999999999999-98866893426657401798789888963235543236


No 61 
>cd05610 STKc_MASTL STKc_MASTL: Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknow
Probab=98.83  E-value=6e-09  Score=88.49  Aligned_cols=141  Identities=20%  Similarity=0.318  Sum_probs=87.9

Q ss_pred             HHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             867--666778888655550212888723687640310468877778899987532114685433469179999999887
Q gi|254780623|r  122 EFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT  199 (517)
Q Consensus       122 ~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  199 (517)
                      .|+  ++|+.|+.|.||+|+-++  +|+.|||||.+..       |+         .          +     ++.... 
T Consensus         5 df~ilk~IG~G~fG~Vyla~~~~--~g~~~AiK~l~~~-------~~---------~----------~-----~~~~~~-   50 (669)
T cd05610           5 EFVIVKPISRGAFGKVYLGRKKN--NSKLYAVKVVKKA-------DM---------I----------N-----KNMVHQ-   50 (669)
T ss_pred             CEEEEEEEECCCCCEEEEEEECC--CCCEEEEEEEEHH-------HC---------C----------C-----HHHHHH-
T ss_conf             27998896417581999999899--9989999998278-------82---------4----------9-----899999-


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHH----HHHHHHHHH
Q ss_conf             888655999988987202446776643000010221783--35300247863242677332002256----899999999
Q gi|254780623|r  200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLE----RLSVTLVQS  273 (517)
Q Consensus       200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~----~la~~l~~~  273 (517)
                           +..|++.+...+     .|.  |-+.|+.+.+..  .|||||++|-.+.+.-  +..+.-..    .+...++.+
T Consensus        51 -----~~~E~~~l~~~~-----hp~--Iv~l~~~~~~~~~~ylvmEy~~gg~L~~~l--~~~~~~~e~~~~~~~~qi~~a  116 (669)
T cd05610          51 -----VQAERDALALSK-----SPF--IVHLYYSLQSANNVYLVMEYLIGGDVKSLL--HIYGYFDEEMAVKYISEVALA  116 (669)
T ss_pred             -----HHHHHHHHHHCC-----CCC--CCEEEEEEEECCEEEEEEECCCCCCHHHHH--HHHCCCCHHHHHHHHHHHHHH
T ss_conf             -----999999998669-----986--795999999899999998278998299999--984899999999999999999


Q ss_pred             HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             99989744866178786228980289535743403121
Q gi|254780623|r  274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                       +.-+-..|+.|-|.-|.||+++.+|.+-+.|||+...
T Consensus       117 -L~~lH~~gIiHRDiKp~NiLl~~~g~vKl~DFGlSk~  153 (669)
T cd05610         117 -LDYLHRHGIIHRDLKPDNMLISNEGHIKLTDFGLSKV  153 (669)
T ss_pred             -HHHHHHCCCEECCCCHHHEEECCCCCEEEEECCCCCC
T ss_conf             -9999978876225780030077899789930474303


No 62 
>cd00192 PTKc Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan
Probab=98.82  E-value=7.4e-09  Score=87.81  Aligned_cols=144  Identities=15%  Similarity=0.203  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHHHEEC-CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             666778888655550212-8887236876403104688777788999875321146854334691799999998878886
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHD-INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM  203 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d-~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El  203 (517)
                      |+|+.|+-|.||+|++++ ++.++.||||+.++...+.                             ..        +  
T Consensus         1 ~~iG~G~fg~V~~a~~~~~~~~~~~VAvK~~~~~~~~~-----------------------------~~--------~--   41 (261)
T cd00192           1 KKLGEGAFGEVYKGELKGKGGKKTPVAVKTLKEDASDS-----------------------------ER--------E--   41 (261)
T ss_pred             CCCCCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCHH-----------------------------HH--------H--
T ss_conf             93874888289999997799725999999989327999-----------------------------99--------9--


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCHHCCCH--HCCCCEEEEECCCCCCCCHHHHHH-------HHCCC---HHHHHHHHH
Q ss_conf             559999889872024467766430000102--217833530024786324267733-------20022---568999999
Q gi|254780623|r  204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWN--RTERDVITMEWIDGVKISDTEKLR-------ACGHD---LERLSVTLV  271 (517)
Q Consensus       204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~--~st~~VLvmE~i~G~~i~d~~~l~-------~~~~d---~~~la~~l~  271 (517)
                      +|.+|++.+.+++.     |.|.  +.|.-  ....-.|||||++|-++.+.-.-.       .....   +..++..++
T Consensus        42 ~~~~E~~~l~~l~H-----pnIv--~~~g~~~~~~~~~iv~Ey~~~GsL~~~l~~~~~~~~~~~~~l~~~~~~~~~~qia  114 (261)
T cd00192          42 DFLKEAKIMKKLGH-----PNIV--RLLGVCTEEEPLYLVLEYMEGGDLLDFLRKSRPVFSPESSTLSLKDLLSFAYQIA  114 (261)
T ss_pred             HHHHHHHHHHHCCC-----CCEE--EEEEEEEECCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             99999999986899-----8884--2878996799889999806999599999863555444468899999999999999


Q ss_pred             HHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             99999897448661787862289802895357434031216989
Q gi|254780623|r  272 QSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       272 ~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      ++ +.-+-..|+.|.|.-|.||+++.+|.+-+-|||+...+++.
T Consensus       115 ~g-l~yLH~~~iiHrDiKp~NILl~~~~~~Kl~DFGls~~~~~~  157 (261)
T cd00192         115 SG-MEYLASKNFVHRDLAARNVLVGEDLVVKIADFGLSRDIYDD  157 (261)
T ss_pred             HH-HHHHHHCCCCCCCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf             99-99997699557877678789879996899216576576789


No 63 
>cd05148 PTKc_Srm_Brk Catalytic Domain of the Protein Tyrosine Kinases, Srm and Brk. Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom
Probab=98.82  E-value=2.5e-08  Score=83.67  Aligned_cols=144  Identities=15%  Similarity=0.169  Sum_probs=93.5

Q ss_pred             HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99867--6667788886555502128887236876403104688777788999875321146854334691799999998
Q gi|254780623|r  120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ  197 (517)
Q Consensus       120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~  197 (517)
                      ++.|+  +.|++||-|+||+|++++   +.+||||+.+-.       +               +        ...     
T Consensus         5 ~~~~~~~~~iG~G~fg~Vy~~~~~~---~~~VAvK~i~~~-------~---------------~--------~~~-----   46 (261)
T cd05148           5 REEFTLERKLGSGYFGEVWEGLWKN---RVRVAIKILKSD-------D---------------L--------LKQ-----   46 (261)
T ss_pred             HHHCEEEEEEECCCCCEEEEEEECC---CCEEEEEEECCC-------C---------------H--------HHH-----
T ss_conf             8985850299518883999999999---989999998746-------7---------------2--------789-----


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHH-HHHCCCH---HHHHHHHH
Q ss_conf             87888655999988987202446776643000010221--783353002478632426773-3200225---68999999
Q gi|254780623|r  198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKL-RACGHDL---ERLSVTLV  271 (517)
Q Consensus       198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l-~~~~~d~---~~la~~l~  271 (517)
                           -+|.+|++.+.+++.     |.  |-+.|.-..  ..-.+||||++|-.+.+.-.- +....+.   -.++..++
T Consensus        47 -----~~f~~Ei~~l~~l~H-----pn--Iv~~~g~~~~~~~~~iv~Ey~~~GsL~~~l~~~~~~~l~~~~~~~i~~qia  114 (261)
T cd05148          47 -----QDFQKEVQALKRLRH-----KH--LISLFAVCSVGEPVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVA  114 (261)
T ss_pred             -----HHHHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             -----999999999986799-----88--841877992199899999817998389986244688799999999999999


Q ss_pred             HHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             9999989744866178786228980289535743403121698
Q gi|254780623|r  272 QSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       272 ~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      .+ +.-+-..|+.|.|.-|.||+++.++.+-+-|||....+..
T Consensus       115 ~g-l~yLH~~~iiHrDLK~~NiLl~~~~~~Kl~DFGls~~~~~  156 (261)
T cd05148         115 EG-MAYLEEQNSIHRDLAARNILVGEDLVCKVADFGLARLIKE  156 (261)
T ss_pred             HH-HHHHHHCCCCCCCCCCCEEEECCCCCEEECCCCCCEECCC
T ss_conf             99-9999869966675661769988999499814755467478


No 64 
>cd06657 STKc_PAK4 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability a
Probab=98.82  E-value=2.9e-08  Score=83.16  Aligned_cols=147  Identities=18%  Similarity=0.231  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf             99999986766677888865555021288872368764031046887777889998753211468543346917999999
Q gi|254780623|r  116 IEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL  195 (517)
Q Consensus       116 ~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~  195 (517)
                      +...|..++ .|+.||-|+||+|+-+.  +|+.||||+..-                    ..  .     .       -
T Consensus        18 p~~~y~~~~-kIG~G~fg~V~~a~~~~--tg~~vAiK~i~~--------------------~~--~-----~-------~   60 (292)
T cd06657          18 PRTYLDNFI-KIGEGSTGIVCIATVKS--SGKLVAVKKMDL--------------------RK--Q-----Q-------R   60 (292)
T ss_pred             HHHHCCCCE-EECCCCCCEEEEEEECC--CCCEEEEEEEEC--------------------CC--C-----C-------H
T ss_conf             489775286-96228881999999889--998999999830--------------------56--4-----0-------3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHH
Q ss_conf             98878886559999889872024467766430000102217--83353002478632426773320022568---99999
Q gi|254780623|r  196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRACGHDLER---LSVTL  270 (517)
Q Consensus       196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l  270 (517)
                      ...+      .+|.+.++.+..     |.|  =+.|..+.+  .-.|||||++|-.+.+.-.  ....+-..   ++..+
T Consensus        61 ~~~~------~~Ei~il~~l~H-----pnI--v~l~~~~~~~~~~ylvmEy~~gG~L~~~~~--~~~l~e~~i~~i~~qi  125 (292)
T cd06657          61 RELL------FNEVVIMRDYQH-----ENV--VEMYNSYLVGDELWVVMEFLEGGALTDIVT--HTRMNEEQIAAVCLAV  125 (292)
T ss_pred             HHHH------HHHHHHHHHCCC-----CCC--CCEEEEEEECCEEEEEEECCCCCCHHHHHH--HCCCCHHHHHHHHHHH
T ss_conf             8999------999999986799-----899--829899998999999996769787999998--1899999999999999


Q ss_pred             HHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             999999897448661787862289802895357434031216989
Q gi|254780623|r  271 VQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       271 ~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      +.+ +.-+-..|+.|-|.-|.||+++.+|++-+.|||....++..
T Consensus       126 l~a-L~yLH~~~IiHRDiKpeNILl~~~g~iKL~DFGla~~~~~~  169 (292)
T cd06657         126 LKA-LSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE  169 (292)
T ss_pred             HHH-HHHHHHCCCEEEECCCHHEEECCCCCEEEEEEEEEEECCCC
T ss_conf             999-99999789453226713067858998899960213664777


No 65 
>cd06607 STKc_TAO Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3.
Probab=98.82  E-value=1.3e-08  Score=85.99  Aligned_cols=151  Identities=17%  Similarity=0.127  Sum_probs=90.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf             89999998676667788886555502128887236876403104688777788999875321146854334691799999
Q gi|254780623|r  115 PIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRA  194 (517)
Q Consensus       115 ~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e  194 (517)
                      ++++.|.-. +-|++||-|.||+|+-+.  +|+.||||+.+..-.                          -+    .+.
T Consensus        12 dp~~~Y~~l-~~IG~G~fg~Vy~a~~~~--tg~~vAiK~i~~~~~--------------------------~~----~~~   58 (307)
T cd06607          12 DPEKLFTDL-REIGHGSFGAVYFARDVR--TNEVVAIKKMSYSGK--------------------------QS----NEK   58 (307)
T ss_pred             CHHHCEEEE-EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHC--------------------------CC----HHH
T ss_conf             967807953-896038881999999889--997999999851112--------------------------57----899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHH---HHHHH
Q ss_conf             9988788865599998898720244677664300001022178--335300247863242677332002256---89999
Q gi|254780623|r  195 LEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLE---RLSVT  269 (517)
Q Consensus       195 ~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~  269 (517)
                             .-++.+|.+.+.+++.     |.|.  +.|.-+.++  -.|||||+.|-..+-.. ....+.+..   .++..
T Consensus        59 -------~~~~~~Ei~il~~l~H-----pnIv--~~~~~~~~~~~~~ivmEy~~G~~~~~~~-~~~~~l~e~~i~~i~~q  123 (307)
T cd06607          59 -------WQDIIKEVRFLQQLRH-----PNTI--EYKGCYLREHTAWLVMEYCLGSASDILE-VHKKPLQEVEIAAICHG  123 (307)
T ss_pred             -------HHHHHHHHHHHHHCCC-----CCCC--CEEEEEEECCEEEEEEEECCCCHHHHHH-HHCCCCCHHHHHHHHHH
T ss_conf             -------9999999999996799-----8999--1999999899899999907898489999-84389999999999999


Q ss_pred             HHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             999999989744866178786228980289535743403121698
Q gi|254780623|r  270 LVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       270 l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      ++.+ +.-+-..|+.|-|.-|.||+++.+|.+-+.|||+...+++
T Consensus       124 il~a-L~yLH~~~iiHRDlKP~NILl~~~g~vKl~DFG~a~~~~~  167 (307)
T cd06607         124 ALQG-LAYLHSHERIHRDIKAGNILLTEPGTVKLADFGSASLVSP  167 (307)
T ss_pred             HHHH-HHHHHHCCEEECCCCCCEEEECCCCCEEEEECCCCEECCC
T ss_conf             9999-9999868976054670007898999999986798744378


No 66 
>cd05097 PTKc_DDR_like Catalytic Domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Discoidin domain receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including 
Probab=98.82  E-value=8.7e-08  Score=79.53  Aligned_cols=143  Identities=18%  Similarity=0.267  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHHHHHHEECC----------CCCC--EEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf             8676667788886555502128----------8872--368764031046887777889998753211468543346917
Q gi|254780623|r  122 EFDDPIAAASIAQVHPAVVHDI----------NGYR--KVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFS  189 (517)
Q Consensus       122 ~fdePlasASiaQVh~A~l~d~----------~~g~--~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~  189 (517)
                      .+.+.|++|+.|.||+|+.+-.          .+|+  .||||+.+++..+.                            
T Consensus         8 ~l~~~iG~G~FG~Vy~~~~~g~~~~~~~~~~~~~~~~~~VAvK~l~~~~~~~----------------------------   59 (295)
T cd05097           8 RLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKT----------------------------   59 (295)
T ss_pred             EEEEEECCCCCCEEEEEEECCCCHHCCCCCCCCCCCEEEEEEEEECCCCCHH----------------------------
T ss_conf             8833981374859896488474210133553458945799999978658978----------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCH--HCCCCEEEEECCCCCCCCHHHHHHHH--------
Q ss_conf             99999998878886559999889872024467766430000102--21783353002478632426773320--------
Q gi|254780623|r  190 AVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWN--RTERDVITMEWIDGVKISDTEKLRAC--------  259 (517)
Q Consensus       190 ~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~--~st~~VLvmE~i~G~~i~d~~~l~~~--------  259 (517)
                                 ..-+|.+|++.+.+++.     |.|  =+.|.-  -..+-.|||||++|-++.+.-.-...        
T Consensus        60 -----------~~~~f~~E~~il~~l~H-----pNI--V~l~G~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~~  121 (295)
T cd05097          60 -----------ARNDFLKEIKIMSRLKN-----PNI--IRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHAN  121 (295)
T ss_pred             -----------HHHHHHHHHHHHHHCCC-----CCC--CCEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf             -----------99999999999986799-----799--889899998996799997377993999986223332112235


Q ss_pred             ---CCCHH---HHHHHHHH--HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             ---02256---89999999--99998974486617878622898028953574340312169
Q gi|254780623|r  260 ---GHDLE---RLSVTLVQ--SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       260 ---~~d~~---~la~~l~~--~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                         ..+..   .+|..++.  .|+   -..++.|.|.-|.||+++.++.+-+-|||+...+.
T Consensus       122 ~~~~l~~~~~l~ia~qia~gl~yL---h~~~iiHrDLK~~NiLl~~~~~~Ki~DFGlar~~~  180 (295)
T cd05097         122 NIPSVSIANLLYMAVQIASGMKYL---ASLNFVHRDLATRNCLVGNHYTIKIADFGMSRNLY  180 (295)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHH---HHCCEECCCCCCCEEEECCCCCEEEEECCCCCCCC
T ss_conf             778668999999999999999998---54985526667040888899978996442552567


No 67 
>cd06643 STKc_SLK Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.
Probab=98.81  E-value=2.2e-08  Score=84.10  Aligned_cols=148  Identities=16%  Similarity=0.153  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf             99999986766677888865555021288872368764031046887777889998753211468543346917999999
Q gi|254780623|r  116 IEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL  195 (517)
Q Consensus       116 ~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~  195 (517)
                      +++.|.-. +.||.|+-|+||+|+-+.  +|+.||||+....-                                 -++.
T Consensus         3 ~~d~Y~il-~~iG~G~fg~Vy~a~~~~--~~~~~AvK~~~~~~---------------------------------~~~~   46 (282)
T cd06643           3 PEEFWEII-GELGDGAFGKVYKAQNKE--TGVLAAAKVIDTKS---------------------------------EEEL   46 (282)
T ss_pred             HHHCEEEE-EEEECCCCEEEEEEEECC--CCCEEEEEEECCCC---------------------------------HHHH
T ss_conf             45887974-598027683999999889--99499999977248---------------------------------8999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCH---HHHHHHH
Q ss_conf             988788865599998898720244677664300001022178--33530024786324267733200225---6899999
Q gi|254780623|r  196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDL---ERLSVTL  270 (517)
Q Consensus       196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~---~~la~~l  270 (517)
                             -++.+|.+.+..++.     |.  |-+.|.-+.++  -.|||||++|-.+.+.-.-.....+-   ..++..+
T Consensus        47 -------~~~~~Ei~il~~l~H-----pn--Iv~l~~~~~~~~~~~lvmE~~~gg~L~~~l~~~~~~l~e~~~~~i~~qi  112 (282)
T cd06643          47 -------EDYMVEIDILASCDH-----PN--IVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTEPQIRVVCKQT  112 (282)
T ss_pred             -------HHHHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             -------999999999986799-----89--9929999998998999999379994899998707999999999999999


Q ss_pred             HHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             99999989744866178786228980289535743403121698
Q gi|254780623|r  271 VQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       271 ~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      +.+ +.-+-..|+.|-|..|.||+++.+|.+-+.|||+......
T Consensus       113 ~~g-l~ylH~~~iiHRDIKp~NILl~~~g~vKl~DFGls~~~~~  155 (282)
T cd06643         113 LEA-LNYLHENKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTR  155 (282)
T ss_pred             HHH-HHHHHHCCEEEEECCHHHEEECCCCCEEEEECCCCEECCC
T ss_conf             999-9999978976633666877887999999960747730787


No 68 
>cd06917 STKc_NAK1_like Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner.
Probab=98.81  E-value=1.6e-08  Score=85.17  Aligned_cols=143  Identities=20%  Similarity=0.256  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +=||.|+-|.||+|.-..  +|+.|||||..-..                      ..          ++       --+
T Consensus         7 ~~iG~G~fg~V~~a~~~~--~~~~vAiK~i~~~~----------------------~~----------~~-------~~~   45 (277)
T cd06917           7 ELIGRGAYGAVYRGKHVP--TGRVVALKIINLDT----------------------PD----------DD-------VSD   45 (277)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECCCC----------------------CH----------HH-------HHH
T ss_conf             797027683999999989--99899999985314----------------------96----------79-------999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHH---HHHHHHHHHHHHHHH
Q ss_conf             599998898720244677664300001022178--335300247863242677332002256---899999999999897
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLE---RLSVTLVQSFLLHTL  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~l~~~~~~qi~  279 (517)
                      +.+|++-+..++..  +.|  .|=+.|..+.++  -.+||||++|-.+.+.-  +....+-.   .++..++.+ +.-+-
T Consensus        46 ~~~Ei~~l~~l~h~--~~p--nIv~~~~~~~~~~~~~ivmE~~~~g~L~~~~--~~~~~~e~~~~~~~~qi~~a-l~ylH  118 (277)
T cd06917          46 IQREVALLSQLRQS--QPP--NITKYYGSYLKGPRLWIIMEYAEGGSVRTLM--KAGPIAEKYISVIIREVLVA-LKYIH  118 (277)
T ss_pred             HHHHHHHHHHCCCC--CCC--CEEEEEEEEEECCEEEEEEECCCCCCHHHHH--HCCCCCHHHHHHHHHHHHHH-HHHHH
T ss_conf             99999999971789--999--8789999999899999999377988899998--54999999999999999999-99998


Q ss_pred             HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             448661787862289802895357434031216989
Q gi|254780623|r  280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      ..|+.|-|.-|+||+++.+|++-+.|||+...+.+.
T Consensus       119 ~~~iiHRDlKpeNILl~~~~~vKL~DFGla~~~~~~  154 (277)
T cd06917         119 KVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQN  154 (277)
T ss_pred             HCCCEEEECCHHHCEECCCCCEEEECCCCCEECCCC
T ss_conf             789555345625410679998899045276574689


No 69 
>cd06649 PKc_MEK2 MEK2 (MAPKK2 or MKK2): Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase 
Probab=98.81  E-value=6.4e-09  Score=88.28  Aligned_cols=143  Identities=20%  Similarity=0.268  Sum_probs=86.5

Q ss_pred             HHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             867--666778888655550212888723687640310468877778899987532114685433469179999999887
Q gi|254780623|r  122 EFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT  199 (517)
Q Consensus       122 ~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  199 (517)
                      .|+  +.|+.||-|.||+|+-+.  +|+.||+|+.+.....                                 .....+
T Consensus         6 dye~i~~IG~G~fG~Vy~a~~~~--tg~~vAiK~i~~~~~~---------------------------------~~~~~~   50 (331)
T cd06649           6 DFERISELGAGNGGVVTKVQHKP--SGLIMARKLIHLEIKP---------------------------------AIRNQI   50 (331)
T ss_pred             CCEEEEEEECCCCEEEEEEEECC--CCCEEEEEEECHHHCH---------------------------------HHHHHH
T ss_conf             38881386128994999999889--9949999996543087---------------------------------899999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHHHCCCHHH----HHHHHHHH
Q ss_conf             888655999988987202446776643000010221--783353002478632426773320022568----99999999
Q gi|254780623|r  200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRACGHDLER----LSVTLVQS  273 (517)
Q Consensus       200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~~~~d~~~----la~~l~~~  273 (517)
                            .+|++-+..+.     .|.  |-+.|..+.  +.-.+||||++|-.+.++-  +..+.-...    ++..++.+
T Consensus        51 ------~rE~~il~~l~-----hpn--IV~~~~~~~~~~~~~ivmEy~~gg~L~~~l--~~~~~~~e~~~~~i~~qil~g  115 (331)
T cd06649          51 ------IRELQVLHECN-----SPY--IVGFYGAFYSDGEISICMEHMDGGSLDQVL--KEAKRIPEEILGKVSIAVLRG  115 (331)
T ss_pred             ------HHHHHHHHHCC-----CCC--CCCEEEEEEECCEEEEEEECCCCCCHHHHH--HHCCCCCHHHHHHHHHHHHHH
T ss_conf             ------99999998679-----989--995999999899999999838999689999--864999999999999999999


Q ss_pred             HHHHH-HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             99989-7448661787862289802895357434031216989
Q gi|254780623|r  274 FLLHT-LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       274 ~~~qi-~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      .- -+ -.+|++|-|.-|.||+++.+|.+-+.|||+.+.+...
T Consensus       116 L~-yLH~~~~IiHRDiKP~NILl~~~g~vKL~DFGla~~~~~~  157 (331)
T cd06649         116 LA-YLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS  157 (331)
T ss_pred             HH-HHHHCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCC
T ss_conf             99-9985398865356611068989999999567987655557


No 70 
>cd06615 PKc_MEK MEK1/2 (MAPK kinase 1/2, MAPKK1/2 or MKK1/2): Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, extracellul
Probab=98.81  E-value=9.8e-09  Score=86.86  Aligned_cols=136  Identities=21%  Similarity=0.303  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.||-|.||+|+-+.  +|+.||+|+.+-...                     +            .....+.    
T Consensus         7 ~~iG~G~fg~V~~a~~~~--t~~~~A~K~i~~~~~---------------------~------------~~~~~~~----   47 (308)
T cd06615           7 GELGAGNGGVVTKVLHRP--SGLIMARKLIHLEIK---------------------P------------AIRNQII----   47 (308)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHC---------------------H------------HHHHHHH----
T ss_conf             786118892999999889--996999999865519---------------------8------------9999999----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH----
Q ss_conf             59999889872024467766430000102217--833530024786324267733200225689999999999989----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT----  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi----  278 (517)
                        +|.+.+..+.     .|.  |-+.|..+.+  .-.|||||++|-.+.+.  ++..+.-..    ..+..++.|+    
T Consensus        48 --~Ei~il~~~~-----hpn--Iv~l~~~~~~~~~~~ivmEy~~gg~L~~~--l~~~~~l~e----~~~~~i~~qil~~L  112 (308)
T cd06615          48 --RELKVLHECN-----SPY--IVGFYGAFYSDGEISICMEHMDGGSLDQV--LKKAGRIPE----NILGKISIAVLRGL  112 (308)
T ss_pred             --HHHHHHHHCC-----CCC--CCCEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCH----HHHHHHHHHHHHHH
T ss_conf             --9999998679-----999--99099999989999999973799809999--976499999----99999999999999


Q ss_pred             ---H-HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             ---7-44866178786228980289535743403121698
Q gi|254780623|r  279 ---L-RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       279 ---~-~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                         - ..|+.|-|.-|.||+++.+|.+-+.|||+.+.+.+
T Consensus       113 ~ylH~~~~IiHRDiKP~NILl~~~g~vKl~DFGls~~~~~  152 (308)
T cd06615         113 TYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID  152 (308)
T ss_pred             HHHHHHCCEEEEECCCCCEEECCCCCEEEEEECCCEECCC
T ss_conf             9998719987533461227897999999986033302155


No 71 
>cd06654 STKc_PAK1 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulati
Probab=98.80  E-value=2.1e-08  Score=84.37  Aligned_cols=139  Identities=15%  Similarity=0.219  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.||-|.||+|+-+.  +|+.||||+.+..                    . .+.             ...      
T Consensus        26 ~~iG~G~fg~Vy~a~~~~--t~~~vAiK~i~~~--------------------~-~~~-------------~~~------   63 (296)
T cd06654          26 EKIGQGASGTVYTAMDVA--TGQEVAIRQMNLQ--------------------Q-QPK-------------KEL------   63 (296)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEEHH--------------------H-CCH-------------HHH------
T ss_conf             897038683999999889--9989999998432--------------------2-753-------------899------


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHHHHHHHHH
Q ss_conf             599998898720244677664300001022178--3353002478632426773320022568---99999999999897
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQSFLLHTL  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~~~~~qi~  279 (517)
                      +.+|...+.++.     .|.|  -+.|..+.+.  -.+||||++|-.+.+.  +...+.+-..   ++..++.+ +.-+-
T Consensus        64 ~~~Ei~il~~l~-----HpnI--v~l~~~~~~~~~~~ivmE~~~gg~L~~~--l~~~~l~e~~~~~i~~qil~a-L~ylH  133 (296)
T cd06654          64 IINEILVMRENK-----NPNI--VNYLDSYLVGDELWVVMEYLAGGSLTDV--VTETCMDEGQIAAVCRECLQA-LEFLH  133 (296)
T ss_pred             HHHHHHHHHHCC-----CCCC--CEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCHHHHHHHHHHHHHH-HHHHH
T ss_conf             999999998779-----9998--9099999989999999962899947999--871699999999999999999-99998


Q ss_pred             HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             448661787862289802895357434031216989
Q gi|254780623|r  280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      ..|+.|-|.-|.||+++.+|.+-+.|||+...++++
T Consensus       134 ~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~  169 (296)
T cd06654         134 SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE  169 (296)
T ss_pred             HCCCEECCCCCHHEEECCCCCEEEEECCCCEECCCC
T ss_conf             789650217805458989999999957888566788


No 72 
>cd06638 STKc_myosinIIIA Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear hair cells. It is localized to the distal ends of actin-bundled structures.
Probab=98.80  E-value=1e-08  Score=86.74  Aligned_cols=140  Identities=18%  Similarity=0.320  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.||-|.||+|+-+.  +|+.||||+.++.-                            +   .-+          .
T Consensus        24 ~~iG~G~fg~Vy~a~~~~--~g~~vAiK~i~~~~----------------------------~---~~~----------~   60 (286)
T cd06638          24 ETIGKGTYGKVFKVLNKK--NGSKAAVKILDPIH----------------------------D---IDE----------E   60 (286)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECCHH----------------------------C---CHH----------H
T ss_conf             598226383999999758--99899999989011----------------------------6---589----------9


Q ss_pred             HHHHHHHHHHHHCCCCCCCC-CCCHHCCCH--HC--CCCEEEEECCCCCCCCHHHH-HHHHCCCHHHHHHHHHHHHHHH-
Q ss_conf             59999889872024467766-430000102--21--78335300247863242677-3320022568999999999998-
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQG-FRVPKIDWN--RT--ERDVITMEWIDGVKISDTEK-LRACGHDLERLSVTLVQSFLLH-  277 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~--~s--t~~VLvmE~i~G~~i~d~~~-l~~~~~d~~~la~~l~~~~~~q-  277 (517)
                      +.+|.+.+.++++    .|. |.+=.+|.+  ..  ..-.|||||++|-.+.|+-. ....+   +.+.+..+..+++| 
T Consensus        61 ~~~E~~il~~l~~----HpnIv~~~~~~~~~~~~~~~~~~ivmE~~~gg~L~dl~~~~~~~~---~~~~e~~~~~i~~qi  133 (286)
T cd06638          61 IEAEYNILKALSD----HPNVVKFYGMYYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRG---ERMEEPIIAYILHEA  133 (286)
T ss_pred             HHHHHHHHHHHCC----CCCCCEEEEEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHH
T ss_conf             9999999997459----999784999996526565988999997689988999999988607---889999999999999


Q ss_pred             ------HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             ------9744866178786228980289535743403121698
Q gi|254780623|r  278 ------TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       278 ------i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                            +-..|+.|-|.-|.||+++.+|.+-+.|||+...++.
T Consensus       134 l~aL~ylH~~~iiHRDiKp~NILl~~~~~vKl~DFGla~~~~~  176 (286)
T cd06638         134 LMGLQHLHVNKTIHRDVKGNNILLTTEGGVKLVDFGVSAQLTS  176 (286)
T ss_pred             HHHHHHHHHCCCEEEECCHHHEEECCCCCEEEEECCCCEECCC
T ss_conf             9999999988954202667887886899879962676337368


No 73 
>cd05625 STKc_LATS1 STKc_LATS1: Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype and poor prognosis. LATS1 induces G2 arrest and promotes cytokinesis. It 
Probab=98.80  E-value=3.7e-09  Score=90.11  Aligned_cols=136  Identities=22%  Similarity=0.336  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.||-|+||+|+-++  +|+.||+|+.+..       ++         ..           ..    -...+     
T Consensus         7 k~iG~G~fG~V~la~~~~--t~~~~AiK~i~k~-------~~---------~~-----------~~----~~~~~-----   48 (382)
T cd05625           7 KTLGIGAFGEVCLARKVD--TGALYAMKTLRKK-------DV---------LL-----------RN----QVAHV-----   48 (382)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECHH-------HC---------CC-----------HH----HHHHH-----
T ss_conf             588148683999999889--9989999998257-------73---------24-----------67----99999-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH-----
Q ss_conf             5999988987202446776643000010221783--353002478632426773320022568999999999998-----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH-----  277 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q-----  277 (517)
                       .+|.+-+.+..     ++.  |.+.|..+.+++  .|||||++|-.+.+.  +...+.-...    .+..|+.|     
T Consensus        49 -~~E~~il~~~~-----hp~--Iv~l~~~f~~~~~lylVmEy~~gGdL~~~--l~~~~~~~e~----~a~~~~~qi~~aL  114 (382)
T cd05625          49 -KAERDILAEAD-----NEW--VVRLYYSFQDKDNLYFVMDYIPGGDMMSL--LIRMGIFPED----LAQFYIAELTCAV  114 (382)
T ss_pred             -HHHHHHHHHCC-----CCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHCCCCCCHH----HHHHHHHHHHHHH
T ss_conf             -99999998689-----998--77599999989999999972599707775--4125579999----9999999999999


Q ss_pred             --HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC
Q ss_conf             --97448661787862289802895357434031216
Q gi|254780623|r  278 --TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL  312 (517)
Q Consensus       278 --i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l  312 (517)
                        +-..|+.|-|.-|.||+++.+|.+-+.|||++..+
T Consensus       115 ~~lH~~gIiHRDLKPeNILld~~g~iKL~DFGla~~~  151 (382)
T cd05625         115 ESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGF  151 (382)
T ss_pred             HHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCCCC
T ss_conf             9998555401557666378889998899406886343


No 74 
>pfam07714 Pkinase_Tyr Protein tyrosine kinase.
Probab=98.80  E-value=1.6e-08  Score=85.17  Aligned_cols=145  Identities=16%  Similarity=0.218  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHHHEEC--CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             7666778888655550212--88872368764031046887777889998753211468543346917999999988788
Q gi|254780623|r  124 DDPIAAASIAQVHPAVVHD--INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKM  201 (517)
Q Consensus       124 dePlasASiaQVh~A~l~d--~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~  201 (517)
                      .+.|++||-|.||+|+.++  ...+++||||+.++...                     +        .          .
T Consensus         4 ~~~iG~G~fg~Vy~~~~~~~~~~~~~~VAvK~~~~~~~---------------------~--------~----------~   44 (258)
T pfam07714         4 GKKLGEGAFGEVYKGTLKGLGEGTETKVAVKTLKEGAS---------------------E--------E----------E   44 (258)
T ss_pred             EEEEEECCCCEEEEEEEECCCCCCCEEEEEEEECCCCC---------------------H--------H----------H
T ss_conf             46995087839999999378775684999999894489---------------------8--------9----------9


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCH--HCCCCEEEEECCCCCCCCHHHHHHHHCCCH---HHHHHHHHHHHHH
Q ss_conf             86559999889872024467766430000102--217833530024786324267733200225---6899999999999
Q gi|254780623|r  202 EMDLRLEAAAFSEMAENTVKDQGFRVPKIDWN--RTERDVITMEWIDGVKISDTEKLRACGHDL---ERLSVTLVQSFLL  276 (517)
Q Consensus       202 ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~--~st~~VLvmE~i~G~~i~d~~~l~~~~~d~---~~la~~l~~~~~~  276 (517)
                      +-+|.+|++.+.+++.     |.|.  +.|.-  ....-.|||||++|-.+.+.-.-.....+.   ..++..++.+ +.
T Consensus        45 ~~~~~~E~~~l~~l~H-----pnIV--~~~~~~~~~~~~~lvmEy~~~G~L~~~l~~~~~~l~~~~~~~i~~qi~~g-l~  116 (258)
T pfam07714        45 REEFLEEASIMKKLSH-----PNIV--RLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHGEKLTLKDLLQMALQIAKG-ME  116 (258)
T ss_pred             HHHHHHHHHHHHHCCC-----CCEE--EEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-HH
T ss_conf             9999999999986899-----9884--28779978998899997689990899998658997999999999999999-99


Q ss_pred             HHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             897448661787862289802895357434031216989
Q gi|254780623|r  277 HTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       277 qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      -+-..|+.|.|.-|.||+++.+|.+-+.|||+...+...
T Consensus       117 yLH~~~iiHrDiKp~NiLl~~~~~~Kl~DFGla~~~~~~  155 (258)
T pfam07714       117 YLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDD  155 (258)
T ss_pred             HHHHCCEEECCCCCEEEEECCCCCEEEEECCCCEECCCC
T ss_conf             998599751667630589879993999846787687799


No 75 
>cd06627 STKc_Cdc7_like Serine/threonine kinases (STKs), cell division control protein 7 (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in
Probab=98.80  E-value=2.9e-09  Score=90.92  Aligned_cols=137  Identities=18%  Similarity=0.248  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|++||-|.||+|+-+.  +|+.||||+....-.                           +- +   +.       -+
T Consensus         6 ~~lG~G~fg~V~~a~~~~--tg~~vAiK~i~~~~~---------------------------~~-~---~~-------~~   45 (254)
T cd06627           6 DLIGKGAFGVVYKGLNLE--TGDFVAIKQISLEKI---------------------------KE-E---AL-------KS   45 (254)
T ss_pred             EEEECCCCCEEEEEEECC--CCCEEEEEEEEHHHC---------------------------CH-H---HH-------HH
T ss_conf             697217681999999889--997999999865769---------------------------98-9---99-------99


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH-----
Q ss_conf             599998898720244677664300001022178--3353002478632426773320022568999999999998-----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH-----  277 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q-----  277 (517)
                      +.+|++.+.+++.     |.  |-+.|.-+.++  -.+||||++|-.+.+.-  +..+.    +.+..+..|+.|     
T Consensus        46 ~~~Ei~il~~l~H-----pn--Iv~~~~~~~~~~~~~ivmEy~~gg~L~~~l--~~~~~----l~e~~~~~~~~qi~~al  112 (254)
T cd06627          46 IMQEIDLLKNLNH-----PN--IVKYIGSVKTSDSLYIILEYAENGSLRQII--KKFGK----FPESLVAVYVYQVLQGL  112 (254)
T ss_pred             HHHHHHHHHHCCC-----CC--CCCEEEEEEECCEEEEEEECCCCCCHHHHH--HHCCC----CCHHHHHHHHHHHHHHH
T ss_conf             9999999986799-----89--995999999899999999687998499999--87499----99999999999999999


Q ss_pred             --HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             --9744866178786228980289535743403121698
Q gi|254780623|r  278 --TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       278 --i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                        +-..|+.|-|.-|.||+++.+|.+-+.|||+...++.
T Consensus       113 ~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~  151 (254)
T cd06627         113 AYLHEQGVIHRDIKAANILTTKDGVVKLADFGVATKLSD  151 (254)
T ss_pred             HHHHHCCEEEEECCHHHEEECCCCCEEEECCCCCEECCC
T ss_conf             999989948711477877887999989925888438467


No 76 
>cd06621 PKc_MAPKK_Pek1_like Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharo
Probab=98.80  E-value=1e-08  Score=86.68  Aligned_cols=143  Identities=17%  Similarity=0.234  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.||-|+||+|+-+.  +|+.||||+....                    . .+            +..+.+     
T Consensus         7 ~~lG~G~fg~V~~a~~~~--~~~~~AiK~i~~~--------------------~-~~------------~~~~~~-----   46 (287)
T cd06621           7 SRLGEGAGGSVTKCRLKN--TGMIFALKTITTD--------------------P-NP------------DLQKQI-----   46 (287)
T ss_pred             EEEECCCCEEEEEEEECC--CCEEEEEEEECCC--------------------C-CH------------HHHHHH-----
T ss_conf             573048890999999899--9919999998303--------------------5-95------------899999-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCC-CCCHHCCCHH-CCCCEEEEECCCCCCCCHHH-HHHHHCC-CHHH----HHHHHHHHHHH
Q ss_conf             59999889872024467766-4300001022-17833530024786324267-7332002-2568----99999999999
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQG-FRVPKIDWNR-TERDVITMEWIDGVKISDTE-KLRACGH-DLER----LSVTLVQSFLL  276 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~-st~~VLvmE~i~G~~i~d~~-~l~~~~~-d~~~----la~~l~~~~~~  276 (517)
                       .+|.+-+..+.     .|. |..=.+|.+- .+.-.+||||++|-.+.++- .....+. -...    ++..++.+ +.
T Consensus        47 -~~Ei~il~~l~-----HpnIv~~~~~~~~~~~~~~~ivmEy~~gg~L~~~~~~~~~~~~~~~e~~~~~i~~qil~g-L~  119 (287)
T cd06621          47 -LRELEINKSCK-----SPYIVKYYGAFLDESSSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKG-LS  119 (287)
T ss_pred             -HHHHHHHHHCC-----CCCCCCEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HH
T ss_conf             -99999998579-----999990978997088998999995469993999999998717999999999999999999-99


Q ss_pred             HHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             89744866178786228980289535743403121698
Q gi|254780623|r  277 HTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       277 qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      -+-..|+.|-|.-|.||+++.+|.+-+.|||..+++..
T Consensus       120 ylH~~~iiHRDlKp~NILl~~~g~vKl~DFG~s~~~~~  157 (287)
T cd06621         120 YLHSRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVN  157 (287)
T ss_pred             HHHHCCCEECCCCHHHEEECCCCCEEEEECCCCCCCCC
T ss_conf             99979904221674550067999899997855755577


No 77 
>cd05064 PTKc_EphR_A10 Catalytic Domain of the Protein Tyrosine Kinase, Ephrin Receptor A10. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor
Probab=98.80  E-value=2.6e-08  Score=83.63  Aligned_cols=143  Identities=10%  Similarity=0.106  Sum_probs=88.7

Q ss_pred             HHHH--HHHHHHHHHHHHHHHEECCC-CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9867--66677888865555021288-87236876403104688777788999875321146854334691799999998
Q gi|254780623|r  121 CEFD--DPIAAASIAQVHPAVVHDIN-GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ  197 (517)
Q Consensus       121 ~~fd--ePlasASiaQVh~A~l~d~~-~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~  197 (517)
                      ++|+  +-|++||-|+||+|.++-.+ .+..||||..+.+..+.                                    
T Consensus         5 ~~~~l~~~lG~G~Fg~Vy~g~~~~~~~~~~~VavK~l~~~~~~~------------------------------------   48 (266)
T cd05064           5 KSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDK------------------------------------   48 (266)
T ss_pred             HHEEEEEEEEECCCCEEEEEEEECCCCEEEEEEEEEECCCCCHH------------------------------------
T ss_conf             99598569952778699999998899778999999978768979------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHH
Q ss_conf             87888655999988987202446776643000010221--783353002478632426773320022568---9999999
Q gi|254780623|r  198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQ  272 (517)
Q Consensus       198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~  272 (517)
                         .+.+|.+|+..+.+++.     |.|  -+.|.-.+  ..-.|||||++|-++.+.-.-+....+...   ++..++.
T Consensus        49 ---~~~~f~~E~~~l~~l~H-----pnI--V~~~g~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~l~~~~~~~i~~~ia~  118 (266)
T cd05064          49 ---QRRGFLAEALTLGQFDH-----SNI--VRLEGVITRGNTMMIVTEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLAS  118 (266)
T ss_pred             ---HHHHHHHHHHHHHHCCC-----CCC--CCEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             ---99999999999985899-----798--85999999899999999857999189998635799999999999999999


Q ss_pred             HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHE
Q ss_conf             99998974486617878622898028953574340312
Q gi|254780623|r  273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITG  310 (517)
Q Consensus       273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg  310 (517)
                      + +.-+-..|+.|.|.-|.|++++.++.+-+-|||...
T Consensus       119 g-l~yLh~~~iiHrDlK~~NiLl~~~~~~Kl~DFG~~~  155 (266)
T cd05064         119 G-MKYLSEMGYVHKGLAAHKVLVNSDLVCKISGFRRLQ  155 (266)
T ss_pred             H-HHHHHHCCEEECCCCHHHEEECCCCCEEECCCCCCC
T ss_conf             9-999875895506766550898899978988773644


No 78 
>cd06648 STKc_PAK_II Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since g
Probab=98.80  E-value=2.9e-08  Score=83.20  Aligned_cols=147  Identities=19%  Similarity=0.246  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf             99999986766677888865555021288872368764031046887777889998753211468543346917999999
Q gi|254780623|r  116 IEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL  195 (517)
Q Consensus       116 ~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~  195 (517)
                      +.+.|..+ +-|+.||-|.||+|+-+.  +|+.||||+....  +                    .     .       -
T Consensus        17 p~~~y~~l-~~IG~G~fg~V~~a~~~~--tg~~vAiK~i~~~--~--------------------~-----~-------~   59 (285)
T cd06648          17 PRSYLDNF-VKIGEGSTGIVCIATDKS--TGRQVAVKKMDLR--K--------------------Q-----Q-------R   59 (285)
T ss_pred             HHHHCEEE-EEECCCCCEEEEEEEECC--CCCEEEEEEEECC--C--------------------C-----C-------H
T ss_conf             47870788-996237691999999889--9989999998411--1--------------------0-----1-------3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHH
Q ss_conf             988788865599998898720244677664300001022178--3353002478632426773320022568---99999
Q gi|254780623|r  196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLER---LSVTL  270 (517)
Q Consensus       196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l  270 (517)
                      ...      +.+|.+.+.++..     |.  |-+.|.-+.+.  -.|||||++|-.+.+.-  .....+...   ++..+
T Consensus        60 ~~~------~~~Ei~il~~l~H-----pn--IV~~~~~~~~~~~~~ivmE~~~gg~L~~~i--~~~~l~e~~~~~i~~qi  124 (285)
T cd06648          60 REL------LFNEVVIMRDYQH-----PN--IVEMYSSYLVGDELWVVMEFLEGGALTDIV--THTRMNEEQIATVCLAV  124 (285)
T ss_pred             HHH------HHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHHH--HCCCCCHHHHHHHHHHH
T ss_conf             999------9999999986899-----99--982999999899999999689999179998--73899999999999999


Q ss_pred             HHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             999999897448661787862289802895357434031216989
Q gi|254780623|r  271 VQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       271 ~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      +.+ +.-+-..|+.|-|.-|.||+++.+|.+-+.|||+...++.+
T Consensus       125 l~a-L~yLH~~~IiHRDlKpeNILl~~~g~vKl~DFGla~~~~~~  168 (285)
T cd06648         125 LKA-LSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKE  168 (285)
T ss_pred             HHH-HHHHHHCCCEECCCCCHHEEECCCCCEEEEECCCCEECCCC
T ss_conf             999-99999789352547713268879998899954320333667


No 79 
>cd05574 STKc_phototropin_like STKc_phototropin_like: Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-terminal photosensory domain and a C-terminal catalyti
Probab=98.80  E-value=1.2e-08  Score=86.15  Aligned_cols=141  Identities=12%  Similarity=0.179  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.||-|+||+|+-+.  +|+.||||+....-.                    ..       .+.+    ..+     
T Consensus         7 ~~LG~G~fg~V~~~~~~~--t~~~~AiK~i~k~~~--------------------~~-------~~~~----~~~-----   48 (315)
T cd05574           7 KLLGKGDVGRVYLVRLKG--TGKLFALKVLDKKEM--------------------IK-------RNKV----KRV-----   48 (315)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHHC--------------------CC-------HHHH----HHH-----
T ss_conf             880128891999999999--998999999837886--------------------68-------7899----999-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH---
Q ss_conf             5999988987202446776643000010221783--35300247863242677332002256899999999999897---
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL---  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~---  279 (517)
                       .+|.+-+.++.     .|.  |.+.|.-+.+++  .|||||++|-.+.+.-.-...+    .+.+..+..|+.|++   
T Consensus        49 -~~E~~il~~l~-----Hpn--Iv~l~~~~~~~~~~ylvmE~~~gG~L~~~l~~~~~~----~l~e~~~~~~~~qil~al  116 (315)
T cd05574          49 -LTEQEILATLD-----HPF--LPTLYASFQTETYLCLVMDYCPGGELFRLLQRQPGK----CFPEEVARFYAAEVLLAL  116 (315)
T ss_pred             -HHHHHHHHHCC-----CCC--CCEEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCC----CCCHHHHHHHHHHHHHHH
T ss_conf             -99999998779-----989--990999998899899999778998389999860489----999999999999999999


Q ss_pred             ----HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             ----448661787862289802895357434031216989
Q gi|254780623|r  280 ----RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       280 ----~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                          ..|+.|-|.-|.||+++.+|.+.+.|||....++..
T Consensus       117 ~ylH~~~IvHRDlKPeNILl~~~g~vkl~DFgls~~~~~~  156 (315)
T cd05574         117 EYLHLLGIVYRDLKPENILLHEDGHIMLSDFDLSKQSDVE  156 (315)
T ss_pred             HHHHHCCEEEEECCHHEEEECCCCCEEEEECCCCEECCCC
T ss_conf             9998587886204521079979997899546863233767


No 80 
>cd05579 STKc_MAST_like STKc_MAST_like: Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harb
Probab=98.79  E-value=1.1e-08  Score=86.46  Aligned_cols=132  Identities=21%  Similarity=0.369  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67788886555502128887236876403104688777788999875321146854334691799999998878886559
Q gi|254780623|r  127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR  206 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~  206 (517)
                      |++||-|+||+|+-+  .+|+.||||+....-   ...                +        .    ....      +.
T Consensus         1 iG~G~fg~V~~~~~~--~t~~~~AvK~i~~~~---~~~----------------~--------~----~~~~------~~   41 (265)
T cd05579           1 ISKGAYGRVFLAKKK--STGDIYAIKVIKKAD---MIR----------------K--------N----QVDQ------VL   41 (265)
T ss_pred             CCCCCCEEEEEEEEC--CCCCEEEEEEECHHH---CCC----------------H--------H----HHHH------HH
T ss_conf             968819089999989--999899999981788---668----------------7--------8----9999------99


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH------
Q ss_conf             99988987202446776643000010221783--3530024786324267733200225689999999999989------
Q gi|254780623|r  207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT------  278 (517)
Q Consensus       207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi------  278 (517)
                      +|...+.+++.     |  .|-++|.-+.+++  .+||||++|-.+.+.  ++..+    .+-+..+..|+.|+      
T Consensus        42 ~E~~~l~~l~h-----p--nIv~~~~~~~~~~~~~ivmE~~~gg~L~~~--l~~~~----~l~e~~~~~~~~qll~gl~~  108 (265)
T cd05579          42 TERNILSQAQN-----P--FVVKLYYSFQGKKNLYLVMEYLPGGDLASL--LENVG----SLDEDMARIYIAEIVLALEY  108 (265)
T ss_pred             HHHHHHHHCCC-----C--CCCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCC----CCCHHHHHHHHHHHHHHHHH
T ss_conf             99999997799-----9--989199999989989999847999908999--98769----99999999999999999999


Q ss_pred             -HHCCEECCCCCCCEEEEECCCCEEEEECCHHE
Q ss_conf             -74486617878622898028953574340312
Q gi|254780623|r  279 -LRDGFFHADLHPGNLFVDSKGYIVAVDMGITG  310 (517)
Q Consensus       279 -~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg  310 (517)
                       -..|+.|-|.-|.||+++.+|++-+.|||+..
T Consensus       109 lH~~~ivHRDIKpeNiLl~~~g~vKl~DFGls~  141 (265)
T cd05579         109 LHSNGIIHRDLKPDNILIDSNGHLKLTDFGLSK  141 (265)
T ss_pred             HHHCCCCCCCCCHHHEEECCCCCEEEEECCCCC
T ss_conf             998884526575333668799988981045684


No 81 
>cd05032 PTKc_InsR_like Catalytic Domain of Insulin Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological 
Probab=98.79  E-value=7.7e-08  Score=79.91  Aligned_cols=146  Identities=15%  Similarity=0.216  Sum_probs=92.3

Q ss_pred             HHHH--HHHHHHHHHHHHHHHEE---CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf             9867--66677888865555021---288872368764031046887777889998753211468543346917999999
Q gi|254780623|r  121 CEFD--DPIAAASIAQVHPAVVH---DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL  195 (517)
Q Consensus       121 ~~fd--ePlasASiaQVh~A~l~---d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~  195 (517)
                      +.++  +.|++||-|.||+|.++   +++.+++||||+.++.-..                                   
T Consensus         6 ~~~~i~~~iG~G~fG~Vy~g~~~~~~~~~~~~~vAvK~~~~~~~~-----------------------------------   50 (277)
T cd05032           6 EKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASM-----------------------------------   50 (277)
T ss_pred             HHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCH-----------------------------------
T ss_conf             994973699217670999888668765776749999997566697-----------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHH---------HCCCHH
Q ss_conf             9887888655999988987202446776643000010221--78335300247863242677332---------002256
Q gi|254780623|r  196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRA---------CGHDLE  264 (517)
Q Consensus       196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~---------~~~d~~  264 (517)
                          .+..+|.+|++.+.+++.     +.  |-+.|.-.+  .+-.+||||++|-++.+.-.-..         ...+..
T Consensus        51 ----~~~~~f~~E~~il~~l~h-----~n--Iv~~~g~~~~~~~~~ivmEy~~~GsL~~~l~~~~~~~~~~~~~~~l~~~  119 (277)
T cd05032          51 ----RERIEFLNEASVMKEFNC-----HH--VVRLLGVVSTGQPTLVIMELMARGDLKSYLRSRRPEAENNPGLGPPTLQ  119 (277)
T ss_pred             ----HHHHHHHHHHHHHHHCCC-----CC--EEEEEEEEEECCEEEEEEECCCCCCHHHHHHHHCCHHHCCCCCCCCCHH
T ss_conf             ----899999999999987799-----88--8158678868998899998479992899998616401113667998999


Q ss_pred             ---HHHHHHHH--HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             ---89999999--9999897448661787862289802895357434031216989
Q gi|254780623|r  265 ---RLSVTLVQ--SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       265 ---~la~~l~~--~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                         .++..++.  .|+   -..++.|.|.-|.||+++.++.+-+-|||+...++..
T Consensus       120 ~~~~i~~qia~gl~yL---H~~~IiHrDlK~~NILl~~~~~~Ki~DFGls~~~~~~  172 (277)
T cd05032         120 EFIQMAAEIADGMAYL---AAKKFVHRDLAARNCMVAEDLTVKIGDFGMARDIYET  172 (277)
T ss_pred             HHHHHHHHHHHHHHHH---HHCCCCCCCCCCCEEEECCCCCEEECCCCCCEECCCC
T ss_conf             9999999999999999---8689544778877489879998897314100033667


No 82 
>cd05572 STKc_cGK_PKG STKc_cGK_PKG: Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a  soluble pr
Probab=98.78  E-value=1.1e-08  Score=86.62  Aligned_cols=137  Identities=20%  Similarity=0.282  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67788886555502128887236876403104688777788999875321146854334691799999998878886559
Q gi|254780623|r  127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR  206 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~  206 (517)
                      |++||-|+||+|+-+.  +|+.||+|+....-.                    ..           .....      .+.
T Consensus         1 LG~G~fg~V~~~~~~~--t~~~~AiK~i~k~~~--------------------~~-----------~~~~~------~~~   41 (262)
T cd05572           1 LGVGGFGRVELVQYKS--KNRTFALKCVKKRHI--------------------VE-----------TGQQE------HIF   41 (262)
T ss_pred             CCCCCCEEEEEEEECC--CCCEEEEEEECHHHC--------------------CC-----------HHHHH------HHH
T ss_conf             9778366999999889--998999999857886--------------------68-----------67999------999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH-------
Q ss_conf             9998898720244677664300001022178--3353002478632426773320022568999999999998-------
Q gi|254780623|r  207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH-------  277 (517)
Q Consensus       207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q-------  277 (517)
                      +|.+.+..+.     .|.  |.+.|.-+-++  -.+||||++|-.+.+.  +...+.    +-+..+..|+.|       
T Consensus        42 ~E~~il~~l~-----Hpn--Iv~l~~~~~~~~~~yivmE~~~gg~L~~~--i~~~~~----l~e~~~~~~~~qil~al~y  108 (262)
T cd05572          42 SEKEILEECN-----SPF--IVRLYRTFKDKKYIYFLMEYCLGGELWTI--LRDRGL----LDEYTARFYTACVVEAFEY  108 (262)
T ss_pred             HHHHHHHHCC-----CCC--CCCEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCC----CCHHHHHHHHHHHHHHHHH
T ss_conf             9999998779-----989--99789999989999999927999898999--998499----9999999999999999999


Q ss_pred             HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             97448661787862289802895357434031216989
Q gi|254780623|r  278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      +-..|+.|-|.-|.||+++.+|.+-+.|||....+...
T Consensus       109 lH~~~IiHRDiKpeNILi~~~g~vKl~DFG~a~~~~~~  146 (262)
T cd05572         109 LHNRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSG  146 (262)
T ss_pred             HHHCCCEEEECCCCCCCCCCCCCEEECCCCEEEECCCC
T ss_conf             99789476056875413257999886404600686788


No 83 
>cd06619 PKc_MKK5 Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (
Probab=98.78  E-value=1.8e-08  Score=84.89  Aligned_cols=140  Identities=20%  Similarity=0.232  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             76667788886555502128887236876403104688777788999875321146854334691799999998878886
Q gi|254780623|r  124 DDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM  203 (517)
Q Consensus       124 dePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El  203 (517)
                      .|-|++||-|.||+|+-+.  +|+.||||+.+....                                 .+..+.+    
T Consensus         6 ~e~iG~G~fg~Vy~a~~~~--t~~~vAiK~i~~~~~---------------------------------~~~~~~~----   46 (279)
T cd06619           6 QEILGHGNGGTVYKAYHLL--TRRILAVKVIPLDIT---------------------------------VELQKQI----   46 (279)
T ss_pred             EEEEECCCCEEEEEEEECC--CCCEEEEEEECHHCC---------------------------------HHHHHHH----
T ss_conf             7898517892999999999--997999999884319---------------------------------8999999----


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             5599998898720244677664300001022178--33530024786324267733200225689999999999989744
Q gi|254780623|r  204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRD  281 (517)
Q Consensus       204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~  281 (517)
                        .+|.+-+.+..     .|.  |=+.|..+.++  -.+||||++|-.++....+.+.  ....++..++.+ +.-+-..
T Consensus        47 --~~Ei~il~~l~-----hpn--Iv~~~~~~~~~~~~~iv~E~~~gg~L~~~~~~~e~--~~~~i~~qi~~a-L~ylH~~  114 (279)
T cd06619          47 --MSELEILYKCD-----SPY--IIGFYGAFFVENRISICTEFMDGGSLDVYRKIPEH--VLGRIAVAVVKG-LTYLWSL  114 (279)
T ss_pred             --HHHHHHHHHCC-----CCC--CCEEEEEEEECCEEEEEEECCCCCCHHHHHCCCHH--HHHHHHHHHHHH-HHHHHHC
T ss_conf             --99999998679-----999--99197999989998999971699859998568999--999999999999-9999978


Q ss_pred             CEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             866178786228980289535743403121698
Q gi|254780623|r  282 GFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       282 GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      |+.|-|.-|+||+++.+|.+-+.|||....+..
T Consensus       115 ~iiHRDiKp~NILl~~~g~vKl~DFGla~~~~~  147 (279)
T cd06619         115 KILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVN  147 (279)
T ss_pred             CEEECCCCCCCCCCCCCCCEEECCCCCCEECCC
T ss_conf             905353677664388999999855836425478


No 84 
>cd07846 STKc_CDKL2_3 The catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3 subfamily. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, a
Probab=98.78  E-value=1.3e-08  Score=85.83  Aligned_cols=142  Identities=17%  Similarity=0.278  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.||-|+||+|.-++  +|+.||||+..+.-..                                ++..+..     
T Consensus         7 ~~iG~G~fg~Vy~~~~~~--t~~~vAiK~~~~~~~~--------------------------------~~~~~~~-----   47 (286)
T cd07846           7 GLVGEGSYGMVMKCRHKE--TGQIVAIKKFLESEDD--------------------------------KMVKKIA-----   47 (286)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCCC--------------------------------HHHHHHH-----
T ss_conf             188337087999999889--9989999998210156--------------------------------7889999-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHC
Q ss_conf             599998898720244677664300001022178335300247863242677332002256---89999999999989744
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLE---RLSVTLVQSFLLHTLRD  281 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~l~~~~~~qi~~~  281 (517)
                       .+|...+.+++.    ..-|..=.++. ..+.-.+||||++|-.+.+..... .+.+..   .++..++.+. .-+-..
T Consensus        48 -~~Ei~il~~l~H----pnIv~~~~~~~-~~~~~~iv~E~~~~~~l~~l~~~~-~~l~~~~i~~i~~qil~al-~ylH~~  119 (286)
T cd07846          48 -MREIRMLKQLRH----ENLVNLIEVFR-RKKRLYLVFEFVDHTVLDDLEKYP-NGLDESRVRKYLFQVLRGI-EFCHSH  119 (286)
T ss_pred             -HHHHHHHHHCCC----CCCCCEEEEEE-ECCEEEEEEECCCCCCHHHHHHCC-CCCCHHHHHHHHHHHHHHH-HHHHHC
T ss_conf             -999999986799----79991999999-899899999589988299998626-9989999999999999999-999978


Q ss_pred             CEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             86617878622898028953574340312169
Q gi|254780623|r  282 GFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       282 GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                      |+.|.|.-|.||+++.+|.+-+.|||....+.
T Consensus       120 ~iiHRDlKpeNILl~~~~~iKl~DFGla~~~~  151 (286)
T cd07846         120 NIIHRDIKPENILVSQSGVVKLCDFGFARTLA  151 (286)
T ss_pred             CCEECCCCHHHEEECCCCCEEEEECCCHHHCC
T ss_conf             93526587899678889989983323034306


No 85 
>cd06656 STKc_PAK3 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the b
Probab=98.78  E-value=1.8e-08  Score=84.83  Aligned_cols=151  Identities=16%  Similarity=0.227  Sum_probs=94.4

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf             04788999999867666778888655550212888723687640310468877778899987532114685433469179
Q gi|254780623|r  111 ALKAPIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSA  190 (517)
Q Consensus       111 elg~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~  190 (517)
                      ..|.|-++ |.- -+.|+.|+-|.||+|.-..  +|+.||||+....                    . .+.        
T Consensus        13 s~gdp~~~-Y~~-~~~iG~G~fg~Vy~a~~~~--tg~~vAiK~i~~~--------------------~-~~~--------   59 (297)
T cd06656          13 SVGDPKKK-YTR-FEKIGQGASGTVYTAIDIA--TGQEVAIKQMNLQ--------------------Q-QPK--------   59 (297)
T ss_pred             CCCCCCCC-EEE-EEEECCCCCEEEEEEEECC--CCCEEEEEEEEHH--------------------H-CCH--------
T ss_conf             99996603-188-7897048581999999889--9989999998733--------------------2-762--------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHH---
Q ss_conf             99999988788865599998898720244677664300001022178--3353002478632426773320022568---
Q gi|254780623|r  191 VVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLER---  265 (517)
Q Consensus       191 ~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~---  265 (517)
                           ...      +.+|...+.++.     .|.  |-+.|..+.+.  -.+||||++|-.+.+.-  .....+-..   
T Consensus        60 -----~~~------~~~Ei~~l~~l~-----Hpn--Iv~~~~~~~~~~~~~iVmEy~~gg~L~~~l--~~~~l~e~~~~~  119 (297)
T cd06656          60 -----KEL------IINEILVMRENK-----NPN--IVNYLDSYLVGDELWVVMEYLAGGSLTDVV--TETCMDEGQIAA  119 (297)
T ss_pred             -----HHH------HHHHHHHHHHCC-----CCC--CCEEEEEEEECCEEEEEEECCCCCCHHHHH--HCCCCCHHHHHH
T ss_conf             -----899------999999998679-----999--890999999899999999558999289987--516999999999


Q ss_pred             HHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             99999999999897448661787862289802895357434031216989
Q gi|254780623|r  266 LSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       266 la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      ++..++.+ +.-+-..|+.|-|.-|.||+++.+|.+-+.|||+...++++
T Consensus       120 i~~qil~a-L~ylH~~~IiHRDlKP~NILl~~~g~vKL~DFGla~~~~~~  168 (297)
T cd06656         120 VCRECLQA-LDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE  168 (297)
T ss_pred             HHHHHHHH-HHHHHHCCCCCCCCCHHHEEECCCCCEEEECCCCCEECCCC
T ss_conf             99999999-99999789550418816468989999999858888576788


No 86 
>cd05068 PTKc_Frk_like Catalytic Domain of Fyn-related kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a
Probab=98.78  E-value=6.2e-08  Score=80.65  Aligned_cols=142  Identities=17%  Similarity=0.218  Sum_probs=90.0

Q ss_pred             HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             9867--66677888865555021288872368764031046887777889998753211468543346917999999988
Q gi|254780623|r  121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV  198 (517)
Q Consensus       121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  198 (517)
                      .+++  +-|++||-|.||+|++++   ..+||||+.+++-.                           +           
T Consensus         6 ~~~~~~~~iG~G~fg~Vy~~~~~~---~~~VAvK~~~~~~~---------------------------~-----------   44 (261)
T cd05068           6 TSIQLLRKLGAGQFGEVWEGLWNN---TTPVAVKTLKPGTM---------------------------D-----------   44 (261)
T ss_pred             HHEEEEEEEECCCCEEEEEEEECC---CCEEEEEEECCCCC---------------------------C-----------
T ss_conf             996986798318780999999899---98999999847889---------------------------9-----------


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHH-HCCCHHH---HHHHHHH
Q ss_conf             7888655999988987202446776643000010221--78335300247863242677332-0022568---9999999
Q gi|254780623|r  199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRA-CGHDLER---LSVTLVQ  272 (517)
Q Consensus       199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~-~~~d~~~---la~~l~~  272 (517)
                         +=+|.+|++.+.+++.     |.  |-+.|.-.+  ..-.+||||++|-.+.+.-.-.. ...+...   ++..++.
T Consensus        45 ---~~~~~~E~~~l~~l~H-----pn--Iv~~~g~~~~~~~~~iv~E~~~~G~L~~~l~~~~~~~l~~~~~~~i~~qia~  114 (261)
T cd05068          45 ---PKDFLAEAQIMKKLRH-----PK--LIQLYAVCTLEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVAS  114 (261)
T ss_pred             ---HHHHHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             ---9999999999986899-----68--9909999998998999999069998999996378888999999999999999


Q ss_pred             HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             999989744866178786228980289535743403121698
Q gi|254780623|r  273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      . +.-+-..|+.|.|.-|.||+++.+|++.+-|||+...+..
T Consensus       115 g-l~yLH~~~iiHrDLKp~NILl~~~~~vKl~DFGls~~~~~  155 (261)
T cd05068         115 G-MAYLEAQNYIHRDLAARNVLVGENNICKVADFGLARVIKE  155 (261)
T ss_pred             H-HHHHHHCCEECCCCCCCEEEECCCCCEEEEECCCCEECCC
T ss_conf             9-9999867972065661558988999689983432124468


No 87 
>cd06640 STKc_MST4 Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration.
Probab=98.77  E-value=1.5e-08  Score=85.36  Aligned_cols=148  Identities=23%  Similarity=0.312  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf             99999986766677888865555021288872368764031046887777889998753211468543346917999999
Q gi|254780623|r  116 IEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL  195 (517)
Q Consensus       116 ~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~  195 (517)
                      +++.|... +.|++||-|.||+|+-.  .+|+.||||+....-                     ..           +++
T Consensus         2 P~e~y~~l-~~iG~G~fg~Vy~a~~~--~t~~~vAiK~i~~~~---------------------~~-----------~~~   46 (277)
T cd06640           2 PEELFTKL-ERIGKGSFGEVFKGIDN--RTQQVVAIKIIDLEE---------------------AE-----------DEI   46 (277)
T ss_pred             HHHCEEEE-EEECCCCCCEEEEEEEC--CCCCEEEEEEECHHH---------------------CH-----------HHH
T ss_conf             34741988-99713889099999989--999799999986787---------------------84-----------799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHH---HHH
Q ss_conf             988788865599998898720244677664300001022178--335300247863242677332002256899---999
Q gi|254780623|r  196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLS---VTL  270 (517)
Q Consensus       196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la---~~l  270 (517)
                             -++.+|.+-+.++..     |.  |-+.|..+.+.  -.+||||++|-.+.+.  ++....+...++   ..+
T Consensus        47 -------~~~~~Ei~il~~l~h-----pn--Iv~~~~~~~~~~~~~ivmEy~~gg~l~~~--i~~~~~~e~~~~~~~~qi  110 (277)
T cd06640          47 -------EDIQQEITVLSQCDS-----PY--VTKYYGSYLKGTKLWIIMEYLGGGSALDL--LRAGPFDEFQIATMLKEI  110 (277)
T ss_pred             -------HHHHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHCCCCCHHHHHHHHHHH
T ss_conf             -------999999999986799-----88--89499999989999999979997939999--863999999999999999


Q ss_pred             HHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             999999897448661787862289802895357434031216989
Q gi|254780623|r  271 VQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       271 ~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      +.+ +.-+-..|+.|-|.-|.||+++.+|.+-+.|||+.+.+++.
T Consensus       111 ~~a-L~ylH~~~iiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~  154 (277)
T cd06640         111 LKG-LDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDT  154 (277)
T ss_pred             HHH-HHHHHHCCCCCCCCCHHHEEECCCCCEEEEECCCCCCCCCC
T ss_conf             999-99999779823345636604779999999638765166788


No 88 
>cd06637 STKc_TNIK Serine/threonine kinases (STKs),Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytos
Probab=98.77  E-value=8e-09  Score=87.54  Aligned_cols=141  Identities=13%  Similarity=0.191  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.|+-|.||+|+-..  +|+.||||+....-.                           . .   +          +
T Consensus        12 ~~IG~G~fg~Vy~a~~~~--~~~~~AiK~i~~~~~---------------------------~-~---~----------~   48 (272)
T cd06637          12 ELVGNGTYGQVYKGRHVK--TGQLAAIKVMDVTGD---------------------------E-E---E----------E   48 (272)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCC---------------------------C-H---H----------H
T ss_conf             799228782999999989--997999999866878---------------------------6-9---9----------9


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--------CCCCEEEEECCCCCCCCHHHHHHH-HCCCHH---HHHHHHHH
Q ss_conf             599998898720244677664300001022--------178335300247863242677332-002256---89999999
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNR--------TERDVITMEWIDGVKISDTEKLRA-CGHDLE---RLSVTLVQ  272 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--------st~~VLvmE~i~G~~i~d~~~l~~-~~~d~~---~la~~l~~  272 (517)
                      +.+|.+-+.++..    .+.|  -..|.-+        .+.=.+||||++|-.+.+.-.... ....-.   .++..++.
T Consensus        49 ~~~E~~~l~~~~~----h~ni--~~~~~~~~~~~~~~~~~~~~ivmE~~~~G~L~~~l~~~~~~~~~e~~i~~i~~qi~~  122 (272)
T cd06637          49 IKQEINMLKKYSH----HRNI--ATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILR  122 (272)
T ss_pred             HHHHHHHHHHCCC----CCCE--EEEEEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             9999999985659----9807--489999996578887888999995889997999998716899999999999999999


Q ss_pred             HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             9999897448661787862289802895357434031216989
Q gi|254780623|r  273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      + +.-+-..|+.|-|.-|.||+++.+|.+-+.|||+...++..
T Consensus       123 g-l~ylH~~~iiHRDlKp~NILl~~~~~vKi~DFGls~~~~~~  164 (272)
T cd06637         123 G-LSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRT  164 (272)
T ss_pred             H-HHHHHHCCCCCCCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf             9-99999899156746789989879998999858886587667


No 89 
>cd05577 STKc_GRK STKc_GRK: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diver
Probab=98.77  E-value=8.3e-08  Score=79.65  Aligned_cols=144  Identities=17%  Similarity=0.182  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67788886555502128887236876403104688777788999875321146854334691799999998878886559
Q gi|254780623|r  127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR  206 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~  206 (517)
                      |++||-|.||+|+-++  +|+.||||+....--.                 .              ++      .+-...
T Consensus         1 iG~G~fg~V~~~~~~~--~~~~~AvK~i~~~~~~-----------------~--------------~~------~~~~~~   41 (277)
T cd05577           1 LGKGGFGEVCACQVRA--TGKMYACKKLDKKRIK-----------------K--------------RK------GETMAL   41 (277)
T ss_pred             CCCCCCEEEEEEEECC--CCCEEEEEEECHHHCC-----------------C--------------HH------HHHHHH
T ss_conf             9767486999999989--9989999998478803-----------------0--------------56------799999


Q ss_pred             HHHHHHHHHHCCCCCCCCC-CCHHCCCHHCCCCEEEEECCCCCCCCHHH-HHHHHCCCHH---HHHHHHHHHHHHHHHHC
Q ss_conf             9998898720244677664-30000102217833530024786324267-7332002256---89999999999989744
Q gi|254780623|r  207 LEAAAFSEMAENTVKDQGF-RVPKIDWNRTERDVITMEWIDGVKISDTE-KLRACGHDLE---RLSVTLVQSFLLHTLRD  281 (517)
Q Consensus       207 ~Ea~n~~~~~~~~~~~~~v-~vP~vy~~~st~~VLvmE~i~G~~i~d~~-~l~~~~~d~~---~la~~l~~~~~~qi~~~  281 (517)
                      +|+..+..+..     +.| .+=.+|. -.+.-.+||||++|-.+.+.- .....+.+.+   .++..++.+ +.-+-..
T Consensus        42 ~E~~il~~l~~-----p~iv~~~~~~~-~~~~~~~vme~~~ggdL~~~l~~~~~~~l~e~~~~~~~~ql~~a-l~ylH~~  114 (277)
T cd05577          42 NEKIILEKVSS-----PFIVSLAYAFE-TKDALCLVLTLMNGGDLKFHIYNVGNPGFDEARARFYAAEIICG-LEHLHRR  114 (277)
T ss_pred             HHHHHHHHCCC-----CCCCEEEEEEE-ECCEEEEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHH-HHHHHHC
T ss_conf             99999987799-----98993989999-89989999996579838999986389998999999999999999-9999878


Q ss_pred             CEECCCCCCCEEEEECCCCEEEEECCHHEECCHHH
Q ss_conf             86617878622898028953574340312169899
Q gi|254780623|r  282 GFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRE  316 (517)
Q Consensus       282 GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~  316 (517)
                      |+.|-|.-|.||+++.+|.+-+.|||+...++...
T Consensus       115 ~IiHRDiKp~NiLl~~~g~iKl~DFGla~~~~~~~  149 (277)
T cd05577         115 RIVYRDLKPENILLDDHGHIRISDLGLAVEFPEGK  149 (277)
T ss_pred             CEEECCCCCCCCCCCCCCCEEEEECCEEEECCCCC
T ss_conf             92506668644130689978972668147867997


No 90 
>cd05600 STKc_Sid2p_Dbf2p STKc_Sid2p_Dbf2p: Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) a
Probab=98.77  E-value=2.2e-08  Score=84.10  Aligned_cols=224  Identities=18%  Similarity=0.199  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|++||-|+||+|+-++  +|+.||||+.+.....                          +.    ++ ...+.    
T Consensus         7 ~~iG~G~fG~V~~a~~k~--t~~~~AiK~i~k~~~~--------------------------~~----~~-~~~~~----   49 (333)
T cd05600           7 TQVGQGGYGQVFLAKKKD--TGEIVALKRMKKSLLF--------------------------KL----NE-VRHVL----   49 (333)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHCC--------------------------CH----HH-HHHHH----
T ss_conf             783317884999999889--9989999998578865--------------------------87----99-99999----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH-----
Q ss_conf             599998898720244677664300001022178--3353002478632426773320022568999999999998-----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH-----  277 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q-----  277 (517)
                        +|..-+...+     .|.|  -+.|..+.++  -.|||||++|-.+.+.  +...+    .+.+.-+..|+.|     
T Consensus        50 --~E~~il~~~~-----hp~I--v~l~~~f~d~~~lylvmEy~~gGdL~~~--l~~~~----~l~e~~a~~~~~qil~aL  114 (333)
T cd05600          50 --TERDILTTTK-----SEWL--VKLLYAFQDDEYLYLAMEYVPGGDFRTL--LNNLG----VLSEDHARFYMAEMFEAV  114 (333)
T ss_pred             --HHHHHHHHCC-----CCCC--CEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCC----CCCHHHHHHHHHHHHHHH
T ss_conf             --9999998679-----9998--8599999989999999973799819999--98759----999999999999999999


Q ss_pred             --HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf             --974486617878622898028953574340312169899999997669997187278999999841266778936899
Q gi|254780623|r  278 --TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFA  355 (517)
Q Consensus       278 --i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~  355 (517)
                        +-..|+.|-|.-|.||+++.+|.+-+.|||+...+.....                    .  -.| .+...-++.+ 
T Consensus       115 ~ylH~~~IiHRDLKPeNILl~~~g~iKL~DFGlak~~~~~~~--------------------t--~~G-Tp~YmAPEvl-  170 (333)
T cd05600         115 DALHELGYIHRDLKPENFLIDASGHIKLTDFGLSKGIVTYAN--------------------S--VVG-SPDYMAPEVL-  170 (333)
T ss_pred             HHHHHCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCC--------------------C--EEC-CCCCCCHHHH-
T ss_conf             999858689862476542326789889987664546755568--------------------5--116-8431089886-


Q ss_pred             HHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH---HHCCCCCHHHHHHHHHHHHH
Q ss_conf             999985210013343331135689999975452797128889999999999884998---76889888999999999999
Q gi|254780623|r  356 QAIRAIGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVAR---MLNPEFNMWVSSEPIVEEWI  432 (517)
Q Consensus       356 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~~~ll~r~l~~lEG~~~---~LdP~~d~~~~~~p~~~~~l  432 (517)
                            ...-++...+-+++|-++.+++.-..-|.-.-|.+..   ..+.....+..   .-.|..++-..++.++++++
T Consensus       171 ------~~~~y~~~~DiWSlGvilyemltG~~PF~g~~~~~~~---~~I~~~~~~~~~P~~~~~~~~~S~~a~DLI~kLL  241 (333)
T cd05600         171 ------RGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETW---ENLKYWKETLQRPVYDDPRFNLSDEAWDLITKLI  241 (333)
T ss_pred             ------CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH---HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf             ------8999892788898999999998787998998989999---9997442122688766765677999999999886


Q ss_pred             H
Q ss_conf             8
Q gi|254780623|r  433 R  433 (517)
Q Consensus       433 ~  433 (517)
                      .
T Consensus       242 ~  242 (333)
T cd05600         242 N  242 (333)
T ss_pred             C
T ss_conf             7


No 91 
>cd05614 STKc_MSK2_N STKc_MSK2_N: Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the 
Probab=98.76  E-value=2.5e-08  Score=83.78  Aligned_cols=143  Identities=15%  Similarity=0.234  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHHHEE-CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021-28887236876403104688777788999875321146854334691799999998878886
Q gi|254780623|r  125 DPIAAASIAQVHPAVVH-DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM  203 (517)
Q Consensus       125 ePlasASiaQVh~A~l~-d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El  203 (517)
                      +.|+.||-|+||.|+-. +..+|+.||+|+.+..-.                ..+          ....    ...    
T Consensus         6 k~LG~G~fG~Vylv~~~~~~~tg~~~AiK~i~k~~~----------------~~~----------~~~~----~~~----   51 (332)
T cd05614           6 KVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAAL----------------VQK----------AKTV----EHT----   51 (332)
T ss_pred             EEEECCCCEEEEEEEECCCCCCCCEEEEEEEEHHHH----------------CCC----------HHHH----HHH----
T ss_conf             795138880899999853078895899999817884----------------221----------7899----999----


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHC-CCH---HHHHHHHHHHHHHH
Q ss_conf             5599998898720244677664300001022178--33530024786324267733200-225---68999999999998
Q gi|254780623|r  204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACG-HDL---ERLSVTLVQSFLLH  277 (517)
Q Consensus       204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~-~d~---~~la~~l~~~~~~q  277 (517)
                        ..|.+.++..+    +.+.|  -+.|..+.++  -.+||||++|-.+.+.  +...+ .+.   +.++..++.+ +.-
T Consensus        52 --~~E~~il~~~~----~~p~i--v~l~~~f~~~~~~ylVmEy~~gG~L~~~--l~~~~~l~e~~~~~~~~qi~~a-L~y  120 (332)
T cd05614          52 --RTERNVLEHVR----QSPFL--VTLHYAFQTEAKLHLILDYVSGGEMFTH--LYQRDNFSEDEVRFYSGEIILA-LEH  120 (332)
T ss_pred             --HHHHHHHHHCC----CCCCE--EEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHH
T ss_conf             --99999999626----89977--8999999879989999967799989999--9864999999999999999999-999


Q ss_pred             HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC
Q ss_conf             97448661787862289802895357434031216
Q gi|254780623|r  278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL  312 (517)
Q Consensus       278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l  312 (517)
                      +-..|+.|-|.-|.||+++.+|.+.+.|||+...+
T Consensus       121 LH~~gIiHRDlKPeNILl~~~g~ikL~DFGlak~~  155 (332)
T cd05614         121 LHKLGIVYRDIKLENILLDSEGHVVLTDFGLSKEF  155 (332)
T ss_pred             HHHCCCEECCCCHHHEEECCCCCEEEECCHHHHHH
T ss_conf             98788652567667700358998896024013655


No 92 
>cd05595 STKc_PKB_beta STKc_PKB_beta: Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insuli
Probab=98.76  E-value=5.7e-08  Score=80.96  Aligned_cols=136  Identities=18%  Similarity=0.197  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67788886555502128887236876403104688777788999875321146854334691799999998878886559
Q gi|254780623|r  127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR  206 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~  206 (517)
                      |+.||-|+|++|+-+.  +|+.||+||.+....  +..                            ++.       ....
T Consensus         3 lG~G~fG~V~~~~~k~--tg~~~AiKvi~k~~~--~~~----------------------------~~~-------~~~~   43 (323)
T cd05595           3 LGKGTFGKVILVREKA--TGRYYAMKILRKEVI--IAK----------------------------DEV-------AHTV   43 (323)
T ss_pred             EEECCCEEEEEEEECC--CCCEEEEEEEEHHHC--CCH----------------------------HHH-------HHHH
T ss_conf             5227284999999889--998999999806885--598----------------------------999-------9999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHH----HHHHHHHHHHHHHHH
Q ss_conf             99988987202446776643000010221783--353002478632426773320022568----999999999998974
Q gi|254780623|r  207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLER----LSVTLVQSFLLHTLR  280 (517)
Q Consensus       207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~----la~~l~~~~~~qi~~  280 (517)
                      +|.+.+.+++     +|.  |-+.|..+.+++  .+||||++|-.+.+.  +...+.-...    ++..++.+ +.-+-.
T Consensus        44 ~E~~il~~l~-----Hp~--Iv~l~~~f~~~~~lylVmEy~~gGdL~~~--l~~~~~~~e~~a~~~~~qi~~a-L~yLH~  113 (323)
T cd05595          44 TESRVLQNTR-----HPF--LTALKYAFQTHDRLCFVMEYANGGELFFH--LSRERVFTEERARFYGAEIVSA-LEYLHS  113 (323)
T ss_pred             HHHHHHHHCC-----CCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHHH
T ss_conf             9999998679-----998--88599999989999999965699848999--9865999999999999999999-999987


Q ss_pred             CCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             4866178786228980289535743403121
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                      .|+.|-|.-|.||+++.+|.+-+.|||++..
T Consensus       114 ~~IiHRDLKPeNILl~~~g~iKL~DFGlak~  144 (323)
T cd05595         114 RDVVYRDIKLENLMLDKDGHIKITDFGLCKE  144 (323)
T ss_pred             CCEECCCCCHHHCCCCCCCCEEECCCCCCEE
T ss_conf             7902365471222303689665223240022


No 93 
>cd06626 STKc_MEKK4 Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs,
Probab=98.76  E-value=2.3e-08  Score=84.00  Aligned_cols=141  Identities=22%  Similarity=0.239  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-|+.||-|.||+|+-..  +|+.||||+.+-                    +.       .+.         .  ..-.
T Consensus         6 ~~lG~G~~g~Vy~~~~~~--~~~~vAiK~i~~--------------------~~-------~~~---------~--~~~~   45 (264)
T cd06626           6 NKIGGGTFGKVYTAVNLD--TGELMAVKEIRI--------------------QD-------NDP---------K--TIKE   45 (264)
T ss_pred             CEEECCCCEEEEEEEECC--CCCEEEEEEECH--------------------HH-------CCH---------H--HHHH
T ss_conf             498217481999999889--998999999810--------------------00-------897---------9--9999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHHHCCCHHH----HHHHHHHHHHHHH
Q ss_conf             599998898720244677664300001022--1783353002478632426773320022568----9999999999989
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRACGHDLER----LSVTLVQSFLLHT  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~----la~~l~~~~~~qi  278 (517)
                      +.+|.+.+.++..     |.|  -+.|.-+  ...-.|||||++|-.+.+.-  +..+.....    ++..++.+. .-+
T Consensus        46 ~~~E~~il~~l~H-----pnI--v~~~~~~~~~~~~~lvmE~~~~g~L~~~l--~~~~~~~e~~~~~~~~qi~~al-~yl  115 (264)
T cd06626          46 IADEMKVLELLKH-----PNL--VKYYGVEVHREKVYIFMEYCSGGTLEELL--EHGRILDEHVIRVYTLQLLEGL-AYL  115 (264)
T ss_pred             HHHHHHHHHHCCC-----CCC--CEEEEEEEECCEEEEEEECCCCCCHHHHH--HHCCCCCHHHHHHHHHHHHHHH-HHH
T ss_conf             9999999987799-----898--94999998899999999789999699999--7079999999999999999999-999


Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             7448661787862289802895357434031216989
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      -..|+.|-|.-|.||+++.+|.+-+.|||+...++..
T Consensus       116 H~~~iiHRDlKp~NILl~~~~~vKl~DFG~a~~~~~~  152 (264)
T cd06626         116 HSHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNN  152 (264)
T ss_pred             HHCCEEECCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf             9899453755789956889996999547674586778


No 94 
>cd05073 PTKc_Hck Catalytic Domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase. Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa
Probab=98.76  E-value=1.3e-08  Score=85.81  Aligned_cols=142  Identities=19%  Similarity=0.257  Sum_probs=93.0

Q ss_pred             HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99867--6667788886555502128887236876403104688777788999875321146854334691799999998
Q gi|254780623|r  120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ  197 (517)
Q Consensus       120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~  197 (517)
                      .++|+  +.|++|+-|.||+|+...   +.+||||+.+++-.                           +    .     
T Consensus         5 ~~~~~l~~~iG~G~fG~Vy~~~~~~---~~~VAvK~l~~~~~---------------------------~----~-----   45 (260)
T cd05073           5 RESLKLEKKLGAGQFGEVWMATYNK---HTKVAVKTMKPGSM---------------------------S----V-----   45 (260)
T ss_pred             HHHEEEEEEEECCCCCEEEEEEECC---CCEEEEEEECCCCC---------------------------C----H-----
T ss_conf             7997972399417886999999899---99999999856767---------------------------8----9-----


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHH-HCCCHH---HHHHHHH
Q ss_conf             878886559999889872024467766430000102217--8335300247863242677332-002256---8999999
Q gi|254780623|r  198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRA-CGHDLE---RLSVTLV  271 (517)
Q Consensus       198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~-~~~d~~---~la~~l~  271 (517)
                           -+|.+|+..+.+++.     |.|.  +.|. .|+  .-.+||||++|-++.+.-.-.. ......   .++..++
T Consensus        46 -----~~f~~E~~~l~~l~H-----pniv--~~~~-~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~~qia  112 (260)
T cd05073          46 -----EAFLAEANVMKTLQH-----DKLV--KLHA-VVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIA  112 (260)
T ss_pred             -----HHHHHHHHHHHHCCC-----CCEE--EEEE-EEECCCEEEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             -----999999999986899-----8886--4999-99469539999916998999998636677789999999999999


Q ss_pred             HHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             9999989744866178786228980289535743403121698
Q gi|254780623|r  272 QSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       272 ~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      .. +..+-..|+.|.|.-|+|++++.++.+-+.|||+...+++
T Consensus       113 ~g-l~yLH~~~iiHrDlKp~NiLl~~~~~~Kl~DFGls~~~~~  154 (260)
T cd05073         113 EG-MAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIED  154 (260)
T ss_pred             HH-HHHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCEECCC
T ss_conf             99-9999869926676772007886998789985688658579


No 95 
>cd06641 STKc_MST3 Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation.
Probab=98.76  E-value=1.7e-08  Score=85.00  Aligned_cols=144  Identities=23%  Similarity=0.317  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf             99999986766677888865555021288872368764031046887777889998753211468543346917999999
Q gi|254780623|r  116 IEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL  195 (517)
Q Consensus       116 ~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~  195 (517)
                      +++.|... +.|++|+-|.||+|+-+  .+|+.||||+....-                     ..           ++.
T Consensus         2 p~e~y~~l-~~iG~G~fg~Vy~a~~~--~~~~~vAiK~i~~~~---------------------~~-----------~~~   46 (277)
T cd06641           2 PEELFTKL-EKIGKGSFGEVFKGIDN--RTQKVVAIKIIDLEE---------------------AE-----------DEI   46 (277)
T ss_pred             HHHCEEEE-EEECCCCCEEEEEEEEC--CCCCEEEEEEECHHH---------------------CH-----------HHH
T ss_conf             34740985-89603878099999989--999799999983797---------------------84-----------799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             988788865599998898720244677664300001022178--335300247863242677332002256899999999
Q gi|254780623|r  196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQS  273 (517)
Q Consensus       196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~  273 (517)
                             -++.+|+.-+.++..     |.  |-+.|..+.++  -.+||||++|-.+.+.  ++....+-     .-+..
T Consensus        47 -------~~~~~Ei~il~~l~h-----pn--Iv~~~~~~~~~~~~~ivmEy~~gg~l~~~--~~~~~l~e-----~~~~~  105 (277)
T cd06641          47 -------EDIQQEITVLSQCDS-----PY--VTKYYGSYLKDTKLWIIMEYLGGGSALDL--LEPGPLDE-----TQIAT  105 (277)
T ss_pred             -------HHHHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHCCCCCH-----HHHHH
T ss_conf             -------999999999986799-----88--99399999989999999979997969999--85499899-----99999


Q ss_pred             HHHHH-------HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             99989-------7448661787862289802895357434031216989
Q gi|254780623|r  274 FLLHT-------LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       274 ~~~qi-------~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      ++.|+       -..|+.|-|.-|.||+++.+|.+-+.|||+.+.+++.
T Consensus       106 ~~~qi~~aL~ylH~~~iiHRDlKp~NILl~~~~~vKl~DFGla~~~~~~  154 (277)
T cd06641         106 ILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDT  154 (277)
T ss_pred             HHHHHHHHHHHHHHCCCCCEECCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf             9999999999999779810024535568879999999436784052788


No 96 
>cd05573 STKc_ROCK_NDR_like STKc_ROCK_NDR_like: Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. 
Probab=98.76  E-value=1.7e-08  Score=85.08  Aligned_cols=139  Identities=19%  Similarity=0.308  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.||.|+||+|+-+.  +|+.||+|+.+..-.                .          +     .+....      
T Consensus         7 ~~lG~G~fg~V~~a~~~~--t~~~~AiK~i~k~~~----------------~----------~-----~~~~~~------   47 (354)
T cd05573           7 KVIGRGAFGEVWLVRKKD--TGKVYAMKILRKSDM----------------L----------K-----RNQVAH------   47 (354)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHH----------------C----------C-----HHHHHH------
T ss_conf             686328683999999889--998999999827881----------------3----------8-----799999------


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH-----
Q ss_conf             599998898720244677664300001022178--3353002478632426773320022568999999999998-----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH-----  277 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q-----  277 (517)
                      +.+|...+....     +|.  |.+.|..+.++  -.|||||++|-.+.+.  +...+.    +.+..+..|+.|     
T Consensus        48 ~~~E~~il~~~~-----hp~--iv~l~~~f~~~~~~ylvmEy~~ggdL~~~--l~~~~~----l~e~~~~~~~~qi~~al  114 (354)
T cd05573          48 VRAERDILADAD-----SPW--IVKLYYSFQDEEYLYLVMEYMPGGDLMTL--LIKYDV----FPEETARFYIAELVLAI  114 (354)
T ss_pred             HHHHHHHHHHCC-----CCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCC----CCHHHHHHHHHHHHHHH
T ss_conf             999999998679-----999--89399999989999999968899888899--986699----99999999999999999


Q ss_pred             --HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             --97448661787862289802895357434031216989
Q gi|254780623|r  278 --TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       278 --i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                        +-..|+.|-|.-|.||+++.+|.+-+.|||+...+...
T Consensus       115 ~~lH~~~iiHRDlKPeNILl~~~g~vKL~DFGlak~~~~~  154 (354)
T cd05573         115 DSVHKLGFIHRDIKPDNILIDADGHIKLADFGLCKKMKKA  154 (354)
T ss_pred             HHHHHCCEEECCCCCCEEEECCCCCEEEEECCCCEECCCC
T ss_conf             9999789175135256589889998898025463014546


No 97 
>cd06655 STKc_PAK2 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptoti
Probab=98.76  E-value=2.5e-08  Score=83.74  Aligned_cols=151  Identities=17%  Similarity=0.281  Sum_probs=95.0

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf             04788999999867666778888655550212888723687640310468877778899987532114685433469179
Q gi|254780623|r  111 ALKAPIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSA  190 (517)
Q Consensus       111 elg~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~  190 (517)
                      .+|.+-++ |.- -+.|+.|+-|+||+|+-+.  +|+.||||+...                    ++ .+.        
T Consensus        13 s~gd~~~~-Y~~-~~~iG~G~fg~V~~a~~~~--t~~~vAiK~i~~--------------------~~-~~~--------   59 (296)
T cd06655          13 SIGDPKKK-YTR-YEKIGQGASGTVFTAIDVA--TGQEVAIKQINL--------------------QK-QPK--------   59 (296)
T ss_pred             CCCCCCCC-EEE-EEEECCCCCEEEEEEEECC--CCCEEEEEEEEC--------------------CC-CCH--------
T ss_conf             99995503-396-2798038680999999889--998999999862--------------------00-853--------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHHHCCCHHH---
Q ss_conf             999999887888655999988987202446776643000010221--783353002478632426773320022568---
Q gi|254780623|r  191 VVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRACGHDLER---  265 (517)
Q Consensus       191 ~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---  265 (517)
                        .+   .      +.+|+..+.++..     |.  |-+.|.-+.  ..-.+||||++|-.+.+.-  ...+.+-..   
T Consensus        60 --~~---~------~~~Ei~il~~l~H-----pn--Iv~l~~~~~~~~~~~ivmEy~~gg~L~~~i--~~~~l~e~~~~~  119 (296)
T cd06655          60 --KE---L------IINEILVMKELKN-----PN--IVNFLDSFLVGDELFVVMEYLAGGSLTDVV--TETCMDEAQIAA  119 (296)
T ss_pred             --HH---H------HHHHHHHHHHCCC-----CC--CCCEEEEEEECCEEEEEEECCCCCCHHHHH--HHCCCCHHHHHH
T ss_conf             --89---9------9999999996799-----89--991999999899999999658999289998--706999999999


Q ss_pred             HHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             99999999999897448661787862289802895357434031216989
Q gi|254780623|r  266 LSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       266 la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      ++..++.+ +.-+-..|+.|-|.-|.||+++.+|.+-+.|||+...+++.
T Consensus       120 i~~qil~a-L~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~  168 (296)
T cd06655         120 VCRECLQA-LEFLHANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPE  168 (296)
T ss_pred             HHHHHHHH-HHHHHHCCCCCCCCCHHHEEECCCCCEEEECCCCCEECCCC
T ss_conf             99999999-99999888744779768778889999999818887777788


No 98 
>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu
Probab=98.76  E-value=1.2e-08  Score=86.31  Aligned_cols=152  Identities=14%  Similarity=0.192  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHHHEECCC-CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             766677888865555021288-8723687640310468877778899987532114685433469179999999887888
Q gi|254780623|r  124 DDPIAAASIAQVHPAVVHDIN-GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME  202 (517)
Q Consensus       124 dePlasASiaQVh~A~l~d~~-~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E  202 (517)
                      .+.|+.||-|+||+|+++.++ ++++||||+.+......                           .+           .
T Consensus         4 ~~~lG~G~fG~Vy~~~~~~~~~~~~~VAvK~~~~~~~~~---------------------------~~-----------~   45 (273)
T cd05035           4 GKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTY---------------------------SE-----------I   45 (273)
T ss_pred             EEEEECCCCEEEEEEEEECCCCEEEEEEEEEECCCCCCH---------------------------HH-----------H
T ss_conf             018830768099999996899868899999977665888---------------------------99-----------9


Q ss_pred             HHHHHHHHHHHHHHCCC-CCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHH-----CCCH---HHHHHHHHHH
Q ss_conf             65599998898720244-6776643000010221783353002478632426773320-----0225---6899999999
Q gi|254780623|r  203 MDLRLEAAAFSEMAENT-VKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRAC-----GHDL---ERLSVTLVQS  273 (517)
Q Consensus       203 lD~~~Ea~n~~~~~~~~-~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~-----~~d~---~~la~~l~~~  273 (517)
                      -+|.+|++.+.+++.-+ -..-++.+-.-..+....-.+||||++|-.+.+.-.-...     ..+.   -+++..++.+
T Consensus        46 ~~f~~E~~~l~~l~HpnIV~l~g~~~~~~~~~~~~~~~iv~ey~~~G~L~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~g  125 (273)
T cd05035          46 EEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALG  125 (273)
T ss_pred             HHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             99999999998679999950899998656456678628999857999589999750456787768999999999999999


Q ss_pred             HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             99989744866178786228980289535743403121698
Q gi|254780623|r  274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                       +.-+-..|+.|.|.-|.||+++.++++.+-|||+...+.+
T Consensus       126 -l~yLH~~~ivHrDlKp~NiLl~~~~~~kl~DFGls~~~~~  165 (273)
T cd05035         126 -MEYLSNRNFIHRDLAARNCMLREDMTVCVADFGLSKKIYS  165 (273)
T ss_pred             -HHHHHHCCCCCCCCCHHEEEECCCCCEEEECCCCCEECCC
T ss_conf             -9988209927676762028898999789941788616679


No 99 
>cd05630 STKc_GRK6 STKc_GRK6: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translatio
Probab=98.76  E-value=6.9e-08  Score=80.29  Aligned_cols=144  Identities=15%  Similarity=0.207  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.|+-|+||+|.-+.  +|+.||+|+....-                 +...              +....      
T Consensus         6 k~lG~G~fG~V~~~~~~~--tg~~~AiK~i~~~~-----------------~~~~--------------~~~~~------   46 (285)
T cd05630           6 RVLGKGGFGEVCACQVRA--TGKMYACKKLEKKR-----------------IKKR--------------KGESM------   46 (285)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHH-----------------CCCH--------------HHHHH------
T ss_conf             897027281999999989--99799999983788-----------------0235--------------78999------


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHH-HHHHHHCCCHHH---HHHHHHHHHHHHH
Q ss_conf             599998898720244677664300001022178--3353002478632426-773320022568---9999999999989
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDT-EKLRACGHDLER---LSVTLVQSFLLHT  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~-~~l~~~~~d~~~---la~~l~~~~~~qi  278 (517)
                      ..+|.+.++++..     +.  |.+.+..+.++  -.|||||++|-.+.+. ......+.+-..   ++..++.+ +.-+
T Consensus        47 ~~~E~~il~~l~h-----~~--iv~l~~~~~~~~~~~lv~e~~~ggdL~~~i~~~~~~~~~e~~~~~~~~qi~~a-l~yl  118 (285)
T cd05630          47 ALNEKQILEKVNS-----RF--VVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCG-LEDL  118 (285)
T ss_pred             HHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHH-HHHH
T ss_conf             9999999987699-----88--89498999869989999995369918999997188999999999999999999-9999


Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             7448661787862289802895357434031216989
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      -..|+.|-|.-|.||+++.+|.+-+.|||+...+++.
T Consensus       119 H~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~  155 (285)
T cd05630         119 HQERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEG  155 (285)
T ss_pred             HHCCCCCCCCCCCCEEECCCCCEEEEECCCCEECCCC
T ss_conf             8798653777733053569997899845622675899


No 100
>cd05072 PTKc_Lyn Catalytic Domain of the Protein Tyrosine Kinase, Lyn. Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa
Probab=98.76  E-value=3.6e-08  Score=82.46  Aligned_cols=143  Identities=19%  Similarity=0.258  Sum_probs=92.1

Q ss_pred             HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             9867--66677888865555021288872368764031046887777889998753211468543346917999999988
Q gi|254780623|r  121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV  198 (517)
Q Consensus       121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  198 (517)
                      +.++  +.|++|+-|.||+|.+++   +.+||||+.+++-.                           +    .+     
T Consensus         6 ~~~~~~~~IG~G~fg~Vy~~~~~~---~~~VAvK~~~~~~~---------------------------~----~~-----   46 (261)
T cd05072           6 ESIKMVKKLGAGQFGEVWMGFYNN---STKVAVKTLKPGTM---------------------------S----VQ-----   46 (261)
T ss_pred             HHEEEEEEEECCCCCEEEEEEECC---CCEEEEEEECCCCC---------------------------C----HH-----
T ss_conf             997972398328886999999999---99999999866755---------------------------7----99-----


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHH-HCCCHH---HHHHHHHH
Q ss_conf             7888655999988987202446776643000010221--78335300247863242677332-002256---89999999
Q gi|254780623|r  199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRA-CGHDLE---RLSVTLVQ  272 (517)
Q Consensus       199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~-~~~d~~---~la~~l~~  272 (517)
                           +|.+|++.+..++.     +.  |-+.|.-+.  ..-.|||||++|-.+.+.-.-.. ...+..   .++..++.
T Consensus        47 -----~f~~E~~~l~~l~H-----pn--IV~~~g~~~~~~~~~lv~E~~~~GsL~~~l~~~~~~~~~~~~~~~~~~qia~  114 (261)
T cd05072          47 -----AFLEEANLMKTLQH-----DK--LVRLYAVVTKEEPIYIITEYMAKGSLLDFLKSDEGSKVQLPKLIDFSAQIAE  114 (261)
T ss_pred             -----HHHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             -----99999999986899-----88--8729999988998899998079993899985366888799999999999999


Q ss_pred             HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             9999897448661787862289802895357434031216989
Q gi|254780623|r  273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      + +.-+-..|+.|.|.-|.||+++.++.+-+-|||+...++..
T Consensus       115 g-L~yLH~~~iiHrDlK~~NiLl~~~~~~Kl~DFGls~~~~~~  156 (261)
T cd05072         115 G-MAYIEKKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDN  156 (261)
T ss_pred             H-HHHHHHCCEECCCCCCCEEEECCCCCEEEEECCCCEECCCC
T ss_conf             9-99998689266614637489889997999855875686799


No 101
>smart00219 TyrKc Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily.
Probab=98.75  E-value=2.9e-08  Score=83.15  Aligned_cols=143  Identities=18%  Similarity=0.253  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHHHHHEEC--CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             67666778888655550212--8887236876403104688777788999875321146854334691799999998878
Q gi|254780623|r  123 FDDPIAAASIAQVHPAVVHD--INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTK  200 (517)
Q Consensus       123 fdePlasASiaQVh~A~l~d--~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~  200 (517)
                      |++-|++||.|+||+|+++.  ...++.||||+.++.....                                       
T Consensus         3 l~~~lG~G~fg~Vy~a~~~~~~~~~~~~VAvK~i~~~~~~~---------------------------------------   43 (258)
T smart00219        3 LGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQ---------------------------------------   43 (258)
T ss_pred             ECCEEECCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCHH---------------------------------------
T ss_conf             46387228885999999958988557799999988557989---------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHH-HHHHCCCH---HHHHHHHHHH-
Q ss_conf             8865599998898720244677664300001022--178335300247863242677-33200225---6899999999-
Q gi|254780623|r  201 MEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEK-LRACGHDL---ERLSVTLVQS-  273 (517)
Q Consensus       201 ~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~-l~~~~~d~---~~la~~l~~~-  273 (517)
                      ..-+|.+|++.+.+++.     |.|.  +.|.-+  ...-.|||||++|-.+.+.-. ........   ..++..++.+ 
T Consensus        44 ~~~~~~~E~~il~~l~H-----pnIv--~~~g~~~~~~~~~lvmE~~~~G~L~~~l~~~~~~~l~~~~~~~i~~qi~~gl  116 (258)
T smart00219       44 QIEEFLREARIMRKLDH-----PNIV--KLLGVCTEEEPLMIVMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGM  116 (258)
T ss_pred             HHHHHHHHHHHHHHCCC-----CCEE--EEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             99999999999986799-----9885--3868997799889999668899199999755899999999999999999999


Q ss_pred             -HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             -99989744866178786228980289535743403121698
Q gi|254780623|r  274 -FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       274 -~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                       |++   ..|+.|.|.-|.||+++.++.+-+.|||+...++.
T Consensus       117 ~yLH---~~~ivHrDiKp~NILl~~~~~~Kl~DFGla~~~~~  155 (258)
T smart00219      117 EYLE---SKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYD  155 (258)
T ss_pred             HHHH---HCCEECCCCCHHHEEECCCCCEEEEECCCCEECCC
T ss_conf             9998---69985061758837888999599997788668889


No 102
>cd06609 STKc_MST3_like Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins req
Probab=98.75  E-value=4e-08  Score=82.15  Aligned_cols=140  Identities=20%  Similarity=0.236  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.||-|.||+|+-+.  +|+.||||+....-   ...                             +. .      .
T Consensus         7 ~~iG~G~fg~Vy~a~~~~--t~~~vAvK~i~~~~---~~~-----------------------------~~-~------~   45 (274)
T cd06609           7 ECIGKGSFGEVYKAIDKR--TNQVVAIKVIDLEE---AED-----------------------------EI-E------D   45 (274)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHH---CHH-----------------------------HH-H------H
T ss_conf             798217684999999989--99899999981676---948-----------------------------99-9------9


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHH---HHHHHHHHHHHHH
Q ss_conf             599998898720244677664300001022178--33530024786324267733200225689---9999999999897
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERL---SVTLVQSFLLHTL  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~l---a~~l~~~~~~qi~  279 (517)
                      +.+|.+.+.++..     |.  |-+.|.-+.++  -.+||||++|-.+.+.-  +....+-..+   +..++.+ +.-+-
T Consensus        46 ~~~Ei~~l~~l~h-----pn--Iv~~~~~~~~~~~~~ivmEy~~gg~L~~~l--~~~~~~e~~~~~~~~qi~~a-L~ylH  115 (274)
T cd06609          46 IQQEIQFLSQCRS-----PY--ITKYYGSFLKGSKLWIIMEYCGGGSCLDLL--KPGKLDETYIAFILREVLLG-LEYLH  115 (274)
T ss_pred             HHHHHHHHHHCCC-----CC--CCCEEEEEEECCEEEEEEECCCCCCHHHHH--HCCCCCHHHHHHHHHHHHHH-HHHHH
T ss_conf             9999999986799-----89--990999999899999999788979799999--70899999999999999999-99998


Q ss_pred             HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             448661787862289802895357434031216989
Q gi|254780623|r  280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      ..|+.|-|.-|.||+++.+|.+-+.|||....++..
T Consensus       116 ~~~iiHRDlKp~NILl~~~g~vKl~DFG~a~~~~~~  151 (274)
T cd06609         116 EEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTST  151 (274)
T ss_pred             HCCEEEEECCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf             699788774668836778999899457886471688


No 103
>cd06645 STKc_MAP4K3 Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MA
Probab=98.74  E-value=2.7e-08  Score=83.45  Aligned_cols=143  Identities=17%  Similarity=0.271  Sum_probs=90.4

Q ss_pred             HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             9867--66677888865555021288872368764031046887777889998753211468543346917999999988
Q gi|254780623|r  121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV  198 (517)
Q Consensus       121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  198 (517)
                      +.++  +.|++||.|+||+|+-+.  +|+.||||+.+-.                       +.          +++.  
T Consensus         9 ~~y~~~~~iG~G~fg~Vy~~~~~~--t~~~~AvK~i~~~-----------------------~~----------~~~~--   51 (267)
T cd06645           9 EDFELIQRIGSGTYGDVYKARNVN--TGELAAIKVIKLE-----------------------PG----------EDFA--   51 (267)
T ss_pred             HHEEEEEEEECCCCEEEEEEEECC--CCCEEEEEEEECC-----------------------CH----------HHHH--
T ss_conf             940972498328685999999889--9979999999477-----------------------42----------0299--


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHHHC-CC---HHHHHHHHHH
Q ss_conf             7888655999988987202446776643000010221--7833530024786324267733200-22---5689999999
Q gi|254780623|r  199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRACG-HD---LERLSVTLVQ  272 (517)
Q Consensus       199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~~~-~d---~~~la~~l~~  272 (517)
                           .+.+|+..+.+++.     |.|  -+.|.-+.  ..-.+||||++|-.+.+.-.  ..+ .+   ...++..++.
T Consensus        52 -----~~~~Ei~~l~~l~H-----pnI--v~~~~~~~~~~~~~ivmEy~~~g~L~~~~~--~~~~~~e~~~~~~~~qi~~  117 (267)
T cd06645          52 -----VVQQEIIMMKDCKH-----SNI--VAYFGSYLRRDKLWICMEFCGGGSLQDIYH--VTGPLSESQIAYVSRETLQ  117 (267)
T ss_pred             -----HHHHHHHHHHHCCC-----CCE--EEEEEEEEECCEEEEEEECCCCCCHHHHHH--HCCCCCHHHHHHHHHHHHH
T ss_conf             -----99999999986899-----988--289999998998999997369991999998--7299999999999999999


Q ss_pred             HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             9999897448661787862289802895357434031216989
Q gi|254780623|r  273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      + +.-+-..|+.|-|.-|.||+++.+|++.+.|||+...++..
T Consensus       118 a-l~yLH~~~iiHRDlKp~NILl~~~g~vKl~DFGls~~~~~~  159 (267)
T cd06645         118 G-LYYLHSKGKMHRDIKGANILLTDNGHVKLADFGVSAQITAT  159 (267)
T ss_pred             H-HHHHHHCCCEEEECCHHHEEECCCCCEEEECCCCCEECCCC
T ss_conf             9-99999779356005533279879998999138675464787


No 104
>cd05571 STKc_PKB STKc_PKB: Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis.
Probab=98.74  E-value=1.2e-07  Score=78.46  Aligned_cols=136  Identities=16%  Similarity=0.157  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67788886555502128887236876403104688777788999875321146854334691799999998878886559
Q gi|254780623|r  127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR  206 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~  206 (517)
                      |+.||-|+||+|+-+.  +|+.||+||.+....  +..                         +   +. ..+      .
T Consensus         3 LG~G~fG~V~l~~~k~--t~~~~AiKvi~k~~~--~~~-------------------------~---~~-~~~------~   43 (323)
T cd05571           3 LGKGTFGKVILVREKA--TGKYYAMKILKKEVI--IAK-------------------------D---EV-AHT------L   43 (323)
T ss_pred             EEECCCEEEEEEEECC--CCCEEEEEEECHHHC--CCH-------------------------H---HH-HHH------H
T ss_conf             3207293999999889--998999999836886--497-------------------------9---99-999------9


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCC-CH---HHHHHHHHHHHHHHHHH
Q ss_conf             9998898720244677664300001022178--335300247863242677332002-25---68999999999998974
Q gi|254780623|r  207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGH-DL---ERLSVTLVQSFLLHTLR  280 (517)
Q Consensus       207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~-d~---~~la~~l~~~~~~qi~~  280 (517)
                      +|.+-+.+.+     +|.  |-+.|..+.++  -.+||||++|-.+.+.  +...+. +-   +.++..++.+ +.-+-.
T Consensus        44 ~E~~il~~l~-----Hp~--Iv~l~~~f~~~~~lylVmEy~~gGdL~~~--l~~~~~l~e~~~~~~~~qi~~a-L~yLH~  113 (323)
T cd05571          44 TESRVLQNTR-----HPF--LTALKYSFQTHDRLCFVMEYANGGELFFH--LSRERVFSEDRARFYGAEIVSA-LGYLHS  113 (323)
T ss_pred             HHHHHHHHCC-----CCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHHH
T ss_conf             9999998679-----998--89599999989999999973599869999--9874999999999999999999-999997


Q ss_pred             CCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             4866178786228980289535743403121
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                      .|+.|-|.-|.||+++.+|.+-+.|||++..
T Consensus       114 ~~IiHRDLKPeNILl~~~g~iKL~DFGlak~  144 (323)
T cd05571         114 CDVVYRDLKLENLMLDKDGHIKITDFGLCKE  144 (323)
T ss_pred             CCCEEEEECCCCCCCCCCCCEEEEECCEEEE
T ss_conf             8926754044445424689788621215452


No 105
>cd05633 STKc_GRK3 STKc_GRK3: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory recept
Probab=98.74  E-value=3.2e-08  Score=82.87  Aligned_cols=143  Identities=16%  Similarity=0.168  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67788886555502128887236876403104688777788999875321146854334691799999998878886559
Q gi|254780623|r  127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR  206 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~  206 (517)
                      |+.|+-|.||+|+-++  +|+.||||+....-   +..                            .+......      
T Consensus         2 iG~G~fG~V~~~~~~~--tg~~~AiK~i~k~~---~~~----------------------------~~~~~~~~------   42 (279)
T cd05633           2 IGRGGFGEVYGCRKAD--TGKMYAMKCLDKKR---IKM----------------------------KQGETLAL------   42 (279)
T ss_pred             CCCCCCEEEEEEEECC--CCCEEEEEEECHHH---HHH----------------------------HHHHHHHH------
T ss_conf             8208370999999889--99899999984788---014----------------------------67789999------


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCC-CH---HHHHHHHHHHHHHHHHH
Q ss_conf             9998898720244677664300001022178--335300247863242677332002-25---68999999999998974
Q gi|254780623|r  207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGH-DL---ERLSVTLVQSFLLHTLR  280 (517)
Q Consensus       207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~-d~---~~la~~l~~~~~~qi~~  280 (517)
                      .|...+.....  .+.|.|.  ..+..+.++  -.+||||++|-.+.+.  +...+. +.   ..++..++.+ +.-+-.
T Consensus        43 ~e~~~~~~~~~--~~~p~iv--~~~~~~~~~~~~~lvmE~~~gg~L~~~--l~~~~~l~e~~~~~~~~qil~a-L~ylH~  115 (279)
T cd05633          43 NERIMLSLVST--GDCPFIV--CMTYAFHTPDKLCFILDLMNGGDLHYH--LSQHGVFSEKEMRFYATEIILG-LEHMHN  115 (279)
T ss_pred             HHHHHHHHHHC--CCCCCEE--EEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHHH
T ss_conf             99999999852--7999787--899999989999999984599869999--9875999999999999999999-999987


Q ss_pred             CCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             48661787862289802895357434031216989
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      .|+.|-|.-|.||+++.+|.+-+.|||+...++..
T Consensus       116 ~~IiHRDlKP~NILl~~~g~~Kl~DFGla~~~~~~  150 (279)
T cd05633         116 RFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK  150 (279)
T ss_pred             CCCEECCCCCCCCCCCCCCCEEECCCCEEEECCCC
T ss_conf             89874104733324036897696501055662688


No 106
>cd05042 PTKc_Aatyk Catalytic Domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina
Probab=98.74  E-value=5.8e-08  Score=80.85  Aligned_cols=140  Identities=14%  Similarity=0.141  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      |.|++|+-|+||+|+.+++++..+||||..+.....                                       .++.+
T Consensus         1 e~iG~G~fG~Vy~g~~~~~~~~~~vavK~l~~~~~~---------------------------------------~~~~~   41 (269)
T cd05042           1 DEIGNGWFGKVLLGEAHRGMSKARVVVKELRASATP---------------------------------------DEQLL   41 (269)
T ss_pred             CCCCCCCCCEEEEEEECCCCEEEEEEEEEECCCCCH---------------------------------------HHHHH
T ss_conf             988678683899999807985289999997876897---------------------------------------99999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHH----CCCH---HHHHHHHHH--HHH
Q ss_conf             5999988987202446776643000010221783353002478632426773320----0225---689999999--999
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRAC----GHDL---ERLSVTLVQ--SFL  275 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~----~~d~---~~la~~l~~--~~~  275 (517)
                      |.+|++.+.+++.-+    -|.+=.+.. -..+-.|||||++|-.+.+.-.-...    ..+.   ..++..++.  .|+
T Consensus        42 f~~Ei~~l~~l~HpN----Iv~~~g~~~-~~~~~~lv~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~ia~~ia~gl~yL  116 (269)
T cd05042          42 FLQEVQPYRELNHPN----VLQCLGQCI-ESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWL  116 (269)
T ss_pred             HHHHHHHHHHCCCCC----CCEEEEEEE-ECCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             999999998689989----860999998-899899999906998299998855555444556999999999999999999


Q ss_pred             HHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             989744866178786228980289535743403121
Q gi|254780623|r  276 LHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       276 ~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                      +   ..|+.|.|..|.||+++.++.+.+-|||+...
T Consensus       117 H---~~~ivHrDlK~~NiLl~~~~~~Ki~DFGla~~  149 (269)
T cd05042         117 H---QADFIHSDLALRNCQLTADLSVKIGDYGLALE  149 (269)
T ss_pred             H---HCCEEECCCCCCEEEECCCCCEEEEECCCCCC
T ss_conf             7---58954267654017888999299986757730


No 107
>cd05092 PTKc_TrkA Catalytic Domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A. Protein Tyrosine Kinase (PTK) family; Tropomyosin related kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory
Probab=98.73  E-value=6.9e-08  Score=80.31  Aligned_cols=144  Identities=15%  Similarity=0.150  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHHHHEEC---CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             7666778888655550212---8887236876403104688777788999875321146854334691799999998878
Q gi|254780623|r  124 DDPIAAASIAQVHPAVVHD---INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTK  200 (517)
Q Consensus       124 dePlasASiaQVh~A~l~d---~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~  200 (517)
                      .+-|++||-|+||+|+.+.   ..++..||||+.++.-.+                                        
T Consensus        10 ~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~----------------------------------------   49 (280)
T cd05092          10 KWELGEGAFGKVFLAECANLLPEQDKMLVAVKALKEANES----------------------------------------   49 (280)
T ss_pred             EEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHH----------------------------------------
T ss_conf             6795457686899999867755876779999997856868----------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHH--------H------HCCC--
Q ss_conf             8865599998898720244677664300001022178--33530024786324267733--------2------0022--
Q gi|254780623|r  201 MEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLR--------A------CGHD--  262 (517)
Q Consensus       201 ~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~--------~------~~~d--  262 (517)
                      ..-+|.+|++-+.+++.     |.  |-+.|.-.+..  -.|||||++|-.+.+.-...        .      ...+  
T Consensus        50 ~~~~~~~E~~~l~~l~H-----pn--Iv~~~g~~~~~~~~~lvmEy~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~  122 (280)
T cd05092          50 ARQDFQREAELLTVLQH-----QH--IVRFYGVCTEGEPLAMVFEYMRHGDLNRFLRSHGPDAKILDEGKDVAPGQLTLP  122 (280)
T ss_pred             HHHHHHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEEECCCCCHHHHHHHHCCCCCCCHHCCCCCCCCCCHH
T ss_conf             99999999999986789-----98--670888992399899999806999089999870874100000024666777999


Q ss_pred             -HHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             -56899999999999897448661787862289802895357434031216989
Q gi|254780623|r  263 -LERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       263 -~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                       .-.++..++.+.. -+-..|+.|.|.-|.||+++.++.+-+-|||+...+...
T Consensus       123 ~~~~i~~qia~gl~-yLHs~~iiHRDlKp~NiLl~~~~~~Kl~DFGls~~~~~~  175 (280)
T cd05092         123 QMLHIAAQIASGMV-YLASLHFVHRDLATRNCLVGEGLVVKIGDFGMSRDIYST  175 (280)
T ss_pred             HHHHHHHHHHHHHH-HHHHCCCCCCCCCCCEEEECCCCCEEECCCEECCCCCCC
T ss_conf             99999999999999-984099736866714289879994897526303315777


No 108
>cd05609 STKc_MAST STKc_MAST: Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAS
Probab=98.73  E-value=7.8e-08  Score=79.88  Aligned_cols=137  Identities=20%  Similarity=0.232  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.||.|+||+|+-+.  +|+.||||+....       +         ..           ..+-.    ..+.    
T Consensus         7 ~~lG~G~fg~V~~a~~~~--t~~~~AiK~i~k~-------~---------~~-----------~~~~~----~~~~----   49 (305)
T cd05609           7 KLISNGAYGAVYLVRHKE--TRQRFAMKKINKQ-------N---------LI-----------LRNQI----QQVF----   49 (305)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEEHH-------H---------CC-----------CHHHH----HHHH----
T ss_conf             786318892999999989--9989999998067-------7---------03-----------44699----9999----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHH----HHHHHHHHHHHHH
Q ss_conf             5999988987202446776643000010221783--353002478632426773320022568----9999999999989
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLER----LSVTLVQSFLLHT  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~----la~~l~~~~~~qi  278 (517)
                        .|.+-+...     ++|  .|.+.|..+-+++  .+||||++|-.+.+.-  ...+.-...    ++..++.+ +.-+
T Consensus        50 --~E~~il~~~-----~hp--~Iv~l~~~~~~~~~~ylvmEy~~gg~L~~~i--~~~~~l~~~~~~~~~~qi~~a-L~yl  117 (305)
T cd05609          50 --VERDILTFA-----ENP--FVVSMFCSFETRRHLCMVMEYVEGGDCATLL--KNIGPLPVDMARMYFAETVLA-LEYL  117 (305)
T ss_pred             --HHHHHHHHC-----CCC--CEEEEEEEEEECCEEEEEEECCCCCCHHHHH--HHCCCCCHHHHHHHHHHHHHH-HHHH
T ss_conf             --999999857-----899--7811136998699899999658998989999--864999999999999999999-9999


Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHE
Q ss_conf             74486617878622898028953574340312
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITG  310 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg  310 (517)
                      -..|+.|-|.-|.||+++.+|.+-+.|||+..
T Consensus       118 H~~~IiHRDlKPeNILl~~~g~iKl~DFGlak  149 (305)
T cd05609         118 HNYGIVHRDLKPDNLLITSMGHIKLTDFGLSK  149 (305)
T ss_pred             HHCCCCCCCCCCCEEEECCCCCEEEEECCCCC
T ss_conf             97896115576122798899988998778773


No 109
>cd07836 STKc_Pho85 The catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85 subfamily. Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the
Probab=98.73  E-value=2.7e-08  Score=83.45  Aligned_cols=136  Identities=18%  Similarity=0.297  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-|+.|+-|.||+|.-+.  +|+.||||+.+-.-.+.                  .+               ...     
T Consensus         6 ~~iG~G~fg~V~~~~~~~--~~~~vAiK~i~~~~~~~------------------~~---------------~~~-----   45 (284)
T cd07836           6 EKLGEGTYATVYKGRNRT--TGEIVALKEIHLDAEEG------------------TP---------------STA-----   45 (284)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHCCCC------------------CH---------------HHH-----
T ss_conf             596128583999999889--99899999986200233------------------18---------------999-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH----
Q ss_conf             5999988987202446776643000010221--7833530024786324267733200225689999999999989----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT----  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi----  278 (517)
                       .+|.+.+..++.     |.  |-+.|.-+-  +.-++||||++| .+.+.-  ...+ .+..+-...+..+++|+    
T Consensus        46 -~~Ei~il~~l~h-----pn--Iv~l~~~~~~~~~~~iv~E~~~~-~L~~~l--~~~~-~~~~l~~~~i~~~~~Qil~aL  113 (284)
T cd07836          46 -IREISLMKELKH-----EN--IVRLHDVIHTESKLMLVFEYMEK-DLKKYM--DTHG-NRGALDPNTVKSFTYQLLKGI  113 (284)
T ss_pred             -HHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCC-CHHHHH--HHHC-CCCCCCHHHHHHHHHHHHHHH
T ss_conf             -999999997799-----89--89297899569989999985899-889999--9726-578999999999999999999


Q ss_pred             ---HHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC
Q ss_conf             ---7448661787862289802895357434031216
Q gi|254780623|r  279 ---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL  312 (517)
Q Consensus       279 ---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l  312 (517)
                         -..|+.|.|.-|.||+++.+|++-+.|||+...+
T Consensus       114 ~ylH~~gIiHRDlKP~NILl~~~~~vKL~DFG~a~~~  150 (284)
T cd07836         114 AFCHENRVLHRDLKPQNLLINKRGELKLADFGLARAF  150 (284)
T ss_pred             HHHHHCCEEEEECCCCEEEECCCCCEEEEECCCHHHC
T ss_conf             9999789154215611069989998899763731324


No 110
>cd06613 STKc_MAP4K3_like Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-bindin
Probab=98.73  E-value=1.7e-08  Score=85.02  Aligned_cols=140  Identities=19%  Similarity=0.242  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             76667788886555502128887236876403104688777788999875321146854334691799999998878886
Q gi|254780623|r  124 DDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM  203 (517)
Q Consensus       124 dePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El  203 (517)
                      .+.||.|+-|+||+|+-+.  +|+.||||+.+-.                       .       .+   ++       -
T Consensus         8 ~~~iG~G~fg~V~~~~~~~--~g~~~AiK~~~~~-----------------------~-------~~---~~-------~   45 (261)
T cd06613           8 LQRIGSGTYGDVYKARDIA--TGELAAVKVIKLE-----------------------P-------GD---DF-------E   45 (261)
T ss_pred             EEEEECCCCEEEEEEEECC--CCCEEEEEEEECC-----------------------C-------HH---HH-------H
T ss_conf             1098417583999999889--9989999998058-----------------------6-------65---79-------9


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHC-CCH---HHHHHHHHHHHHHH
Q ss_conf             55999988987202446776643000010221783--3530024786324267733200-225---68999999999998
Q gi|254780623|r  204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACG-HDL---ERLSVTLVQSFLLH  277 (517)
Q Consensus       204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~-~d~---~~la~~l~~~~~~q  277 (517)
                      ++.+|++.+.++..     |  .|.+.|..+.+++  .+||||++|-.+.+.-  +..+ .+-   ..++..++.+ +.-
T Consensus        46 ~~~~Ei~il~~l~H-----p--nIv~~~~~~~~~~~~~ivmEy~~~g~L~~~~--~~~~~~~e~~i~~~~~qil~a-L~y  115 (261)
T cd06613          46 IIQQEISMLKECRH-----P--NIVAYFGSYLRRDKLWIVMEYCGGGSLQDIY--QVTGPLSELQIAYVCRETLKG-LAY  115 (261)
T ss_pred             HHHHHHHHHHHCCC-----C--CCCEEEEEEEECCEEEEEEECCCCCCHHHHH--HHCCCCCHHHHHHHHHHHHHH-HHH
T ss_conf             99999999986799-----8--9992999999899999999797989099999--734999999999999999999-999


Q ss_pred             HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             97448661787862289802895357434031216989
Q gi|254780623|r  278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      +-..|+.|-|.-|.||+++.+|.+-+.|||....++..
T Consensus       116 lH~~~iiHRDiKp~NILl~~~~~vKi~DFGla~~~~~~  153 (261)
T cd06613         116 LHSQGKIHRDIKGANILLTEDGDVKLADFGVSAQLTAT  153 (261)
T ss_pred             HHHCCCEECCCCHHHEEECCCCCEEEECCCCCEECCCC
T ss_conf             99889053456779879889999999258266575687


No 111
>cd05051 PTKc_DDR Catalytic Domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors. Protein Tyrosine Kinase (PTK) family; Discoidin domain receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke
Probab=98.73  E-value=2e-07  Score=76.65  Aligned_cols=142  Identities=17%  Similarity=0.219  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHHHHEEC--------------CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf             7666778888655550212--------------88872368764031046887777889998753211468543346917
Q gi|254780623|r  124 DDPIAAASIAQVHPAVVHD--------------INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFS  189 (517)
Q Consensus       124 dePlasASiaQVh~A~l~d--------------~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~  189 (517)
                      -+.|+.|+.|.||+|..+.              .+.++.||||+.+++..+.                            
T Consensus        10 ~~~iG~G~FG~Vy~a~~~~~~~~~~~~~~~~~~~~~~~~VAvK~l~~~~~~~----------------------------   61 (296)
T cd05051          10 VEKLGEGQFGEVHLCEAEGLQDFSEKAFAENDSADAPRLVAVKKLRPDASDN----------------------------   61 (296)
T ss_pred             EEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHH----------------------------
T ss_conf             0698228881999707748764321111124557776589999978768978----------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC---CCCEEEEECCCCCCCCHHHHHHH--------
Q ss_conf             9999999887888655999988987202446776643000010221---78335300247863242677332--------
Q gi|254780623|r  190 AVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT---ERDVITMEWIDGVKISDTEKLRA--------  258 (517)
Q Consensus       190 ~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s---t~~VLvmE~i~G~~i~d~~~l~~--------  258 (517)
                                 ..-+|.+|++.+.+++.     |.|  =+.|. .|   ..-.|||||++|-.+.+.-.-..        
T Consensus        62 -----------~~~~f~~Ei~il~~l~H-----pnI--v~~~g-~~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~  122 (296)
T cd05051          62 -----------AREDFLKEVKILSRLSD-----PNI--ARLLG-VCTQDPPLCMIMEYMENGDLNQFLQKHVAETSGLAC  122 (296)
T ss_pred             -----------HHHHHHHHHHHHHHCCC-----CCC--CCEEE-EEEECCEEEEEEEECCCCCHHHHHHHCCCCCCCCCC
T ss_conf             -----------99999999999986899-----488--87989-998899889999906899789999863565432001


Q ss_pred             --HCCCH---HHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             --00225---68999999999998974486617878622898028953574340312169
Q gi|254780623|r  259 --CGHDL---ERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       259 --~~~d~---~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                        .....   -.++..++... .-+-..++.|.|.-|.||+++.++.+-+-|||+...+.
T Consensus       123 ~~~~l~~~~~~~i~~qia~gl-~yLh~~~iiHrDlK~~NiLl~~~~~~Ki~DFGlsr~~~  181 (296)
T cd05051         123 NSKTLSFSTLLYMATQIASGM-KYLESLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLY  181 (296)
T ss_pred             CCCCCCHHHHHHHHHHHHHHH-HHHHHCCEECCCCCCCEEEECCCCCEEEEECCCCCCCC
T ss_conf             357789999999999999999-99977993447567265998899989998656773457


No 112
>cd07867 STKc_CDC2L6 The catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinase, Cell Division Cycle 2-like 6. Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, ca
Probab=98.73  E-value=3.5e-08  Score=82.56  Aligned_cols=142  Identities=19%  Similarity=0.278  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             66778888655550212888723687640310468877778899987532114685433469179999999887888655
Q gi|254780623|r  126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL  205 (517)
Q Consensus       126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~  205 (517)
                      =|+.||-|+||+|..+|+..++.||||+.+..-                           ..         ...      
T Consensus         8 kiG~G~fg~V~~~~~~d~~~~~~vAiK~i~~~~---------------------------~~---------~~~------   45 (317)
T cd07867           8 KVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG---------------------------IS---------MSA------   45 (317)
T ss_pred             EEEECCCEEEEEEEECCCCCCEEEEEEEECCCC---------------------------CC---------HHH------
T ss_conf             951161809999997139737799999989877---------------------------72---------899------


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC-EEEEECCCCCCCCHHHHHHH---HCCCHHHHHHHHHHHHHHHHH--
Q ss_conf             999988987202446776643000010221783-35300247863242677332---002256899999999999897--
Q gi|254780623|r  206 RLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD-VITMEWIDGVKISDTEKLRA---CGHDLERLSVTLVQSFLLHTL--  279 (517)
Q Consensus       206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~-VLvmE~i~G~~i~d~~~l~~---~~~d~~~la~~l~~~~~~qi~--  279 (517)
                      .+|...+++++.    ..-|..=.+|.+.++.. .|||||++|. +.++-....   ....+..+.+..+..++.|++  
T Consensus        46 ~rEi~iL~~l~h----pniv~l~~~~~~~~~~~~~lv~e~~~~~-l~~~i~~~~~~~~~~~~~~l~~~~i~~i~~qll~a  120 (317)
T cd07867          46 CREIALLRELKH----PNVIALQKVFLSHSDRKVWLLFDYAEHD-LWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDG  120 (317)
T ss_pred             HHHHHHHHHCCC----CCCCCEEEEEECCCCCEEEEEEECCCCC-HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             999999987789----8998288999627997899999727997-89998862210102576678999999999999999


Q ss_pred             -----HCCEECCCCCCCEEEEE----CCCCEEEEECCHHEECCH
Q ss_conf             -----44866178786228980----289535743403121698
Q gi|254780623|r  280 -----RDGFFHADLHPGNLFVD----SKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       280 -----~~GfFHaDPHpGNi~v~----~dg~i~~lDfG~vg~l~~  314 (517)
                           ..|+.|.|..|.||++.    .+|++-+.|||....++.
T Consensus       121 l~ylH~~~IiHRDiKP~NILi~~~~~~~~~vKi~DFG~a~~~~~  164 (317)
T cd07867         121 IHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNS  164 (317)
T ss_pred             HHHHHHCCEECCCCCCCCEEEECCCCCCCCEEECCCCCCEECCC
T ss_conf             99998789552678700079823687668467646660034388


No 113
>cd05080 PTKc_Tyk2_rpt2 Catalytic (Repeat 2) Domain of the Protein Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign
Probab=98.73  E-value=7.6e-08  Score=79.95  Aligned_cols=140  Identities=14%  Similarity=0.199  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHHEE--CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021--2888723687640310468877778899987532114685433469179999999887888
Q gi|254780623|r  125 DPIAAASIAQVHPAVVH--DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME  202 (517)
Q Consensus       125 ePlasASiaQVh~A~l~--d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E  202 (517)
                      +.|++|+-|+||+++.+  +.++|+.||||+.+++..+.                                       ..
T Consensus        10 k~iG~G~FG~V~~~~~~~~~~~~g~~vAvK~l~~~~~~~---------------------------------------~~   50 (283)
T cd05080          10 RVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQ---------------------------------------NT   50 (283)
T ss_pred             EEECCCCCEEEEEEEEEEEECCCCEEEEEEEECCCCCHH---------------------------------------HH
T ss_conf             795257784999806841378889299999988445977---------------------------------------89


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC---C--EEEEECCCCCCCCHHHHHHHHCCCHH---HHHHHHHHHH
Q ss_conf             65599998898720244677664300001022178---3--35300247863242677332002256---8999999999
Q gi|254780623|r  203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER---D--VITMEWIDGVKISDTEKLRACGHDLE---RLSVTLVQSF  274 (517)
Q Consensus       203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~---~--VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~l~~~~  274 (517)
                      -+|.+|+..+..++.     |.|  -+.| .+|+.   +  .|||||++|-++.+.  ++....+..   .++..++.. 
T Consensus        51 ~~~~~E~~il~~l~H-----pnI--v~~~-g~~~~~~~~~~~lv~Ey~~~GsL~~~--l~~~~l~~~~~~~~~~qia~g-  119 (283)
T cd05080          51 SGWKKEINILKTLYH-----ENI--VKYK-GCCSEQGGKGLQLIMEYVPLGSLRDY--LPKHKLNLAQLLLFAQQICEG-  119 (283)
T ss_pred             HHHHHHHHHHHHCCC-----CCE--EEEE-EEEECCCCCEEEEEEECCCCCCHHHH--HHCCCCCHHHHHHHHHHHHHH-
T ss_conf             999999999986799-----877--0089-89832899689999976799998886--301799999999999999999-


Q ss_pred             HHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             9989744866178786228980289535743403121698
Q gi|254780623|r  275 LLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       275 ~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      +.-+-..|+.|.|.-|.||+++.++.+-+-|||+...++.
T Consensus       120 l~yLH~~~iiHRDlK~~NiLl~~~~~~Ki~DFGlsr~~~~  159 (283)
T cd05080         120 MAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPE  159 (283)
T ss_pred             HHHHHCCCCCCCCCCCCEEEECCCCCEEEEECEEEEECCC
T ss_conf             9998309915375674107887899789842220144478


No 114
>cd05608 STKc_GRK1 STKc_GRK1: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod 
Probab=98.73  E-value=4.4e-08  Score=81.84  Aligned_cols=141  Identities=14%  Similarity=0.227  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67788886555502128887236876403104688777788999875321146854334691799999998878886559
Q gi|254780623|r  127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR  206 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~  206 (517)
                      |+.||-|.||+|+-+.  +|+.||||+....-   +              ..      .    ...    ...      .
T Consensus         1 LG~G~fg~V~~~~~~~--tg~~~AiK~i~k~~---~--------------~~------~----~~~----~~~------~   41 (280)
T cd05608           1 LGKGGFGEVSACQMRA--TGKMYACKKLNKKR---L--------------KK------R----KGY----EGA------M   41 (280)
T ss_pred             CCCCCCEEEEEEEECC--CCCEEEEEEEEHHH---C--------------CC------H----HHH----HHH------H
T ss_conf             9778574999999999--99799999980788---2--------------25------6----899----999------9


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHH-HHHH--HCCCHH---HHHHHHHHHHHHHH
Q ss_conf             9998898720244677664300001022178--33530024786324267-7332--002256---89999999999989
Q gi|254780623|r  207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTE-KLRA--CGHDLE---RLSVTLVQSFLLHT  278 (517)
Q Consensus       207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~-~l~~--~~~d~~---~la~~l~~~~~~qi  278 (517)
                      +|.+.+.++..     +.  |.+.|..+.++  -.|||||++|-.+.+.- ....  .+.+-.   .++..++.+ +.-+
T Consensus        42 ~E~~il~~l~h-----~~--iv~l~~~~~~~~~~~lvmE~~~gG~L~~~i~~~~~~~~~~~e~~~~~~~~qi~~a-L~yl  113 (280)
T cd05608          42 VEKRILARVHS-----RF--IVSLAYAFQTKTDLCLVMTLMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIILG-LEHL  113 (280)
T ss_pred             HHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHH
T ss_conf             99999986699-----87--8859999987997899997268991899998755417998999999999999999-9999


Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             744866178786228980289535743403121698
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      -..|+.|-|.-|.||+++.+|.+-+.|||....+.+
T Consensus       114 H~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~  149 (280)
T cd05608         114 HQHRIVYRDLKPENVLLDNDGNVRISDLGLAVELKD  149 (280)
T ss_pred             HHCCCEEEECCCCCEEECCCCCEEEECCCCCEEECC
T ss_conf             878926801473212146999889840464268327


No 115
>cd05611 STKc_Rim15_like STKc_Rim15_like: Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stati
Probab=98.72  E-value=2.3e-08  Score=84.00  Aligned_cols=135  Identities=19%  Similarity=0.360  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      ++|+.||-|+||+|+-+.  +|+.||||+.+..       +         .          ...           .+..+
T Consensus         2 ~~iG~G~fg~V~~a~~~~--t~~~~AiK~i~~~-------~---------~----------~~~-----------~~~~~   42 (260)
T cd05611           2 KPISKGAFGSVYLAKKRS--TGDYFAIKVLKKS-------D---------M----------IAK-----------NQVTN   42 (260)
T ss_pred             CCCCCCCCCEEEEEEECC--CCCEEEEEEEEHH-------H---------C----------CCH-----------HHHHH
T ss_conf             643558481999999889--9989999998257-------7---------5----------466-----------79999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH----
Q ss_conf             599998898720244677664300001022178--33530024786324267733200225689999999999989----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT----  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi----  278 (517)
                      +..|..++....    +.|.  |-+.|.-+-++  -.+||||++|-.+.+.-  +..+    .+.+..+..++.|+    
T Consensus        43 ~~~e~~~~~~~~----~hpn--Iv~~~~~~~~~~~~~lvmEy~~gg~L~~~i--~~~~----~l~e~~~~~~~~qil~al  110 (260)
T cd05611          43 VKAERAIMMIQG----ESPY--VAKLYYSFQSKDYLYLVMEYLNGGDCASLI--KTLG----GLPEDWAKQYIAEVVLGV  110 (260)
T ss_pred             HHHHHHHHHHHC----CCCC--EEEEEEEEEECCEEEEEEECCCCCCHHHHH--HHCC----CCCHHHHHHHHHHHHHHH
T ss_conf             999999999737----9995--756999999899999998388998799999--8749----999999999999999999


Q ss_pred             ---HHCCEECCCCCCCEEEEECCCCEEEEECCHHE
Q ss_conf             ---74486617878622898028953574340312
Q gi|254780623|r  279 ---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITG  310 (517)
Q Consensus       279 ---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg  310 (517)
                         -..|+.|-|.-|.||+++.+|.+-+.|||+..
T Consensus       111 ~ylH~~~IiHRDiKpeNILl~~~~~~Kl~DFGls~  145 (260)
T cd05611         111 EDLHQRGIIHRDIKPENLLIDQTGHLKLTDFGLSR  145 (260)
T ss_pred             HHHHHCCEECCCCCHHHEEECCCCCEEEEECCCCC
T ss_conf             99998890506666534668799989995178785


No 116
>PTZ00263 protein kinase A catalytic subunit; Provisional
Probab=98.72  E-value=9.4e-08  Score=79.27  Aligned_cols=145  Identities=18%  Similarity=0.265  Sum_probs=91.4

Q ss_pred             HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             9867--66677888865555021288872368764031046887777889998753211468543346917999999988
Q gi|254780623|r  121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV  198 (517)
Q Consensus       121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  198 (517)
                      ..|+  +.|+.||-|+||+|+-+.  +|+.||+|+.+..--                .          +.     .....
T Consensus        18 ~dyei~~~LG~G~fG~V~~a~~k~--t~~~~AiK~i~k~~~----------------~----------~~-----~~~~~   64 (329)
T PTZ00263         18 SDFEMGETLGTGSFGRVRIAKHKG--TGEYYAIKCLKKREI----------------L----------KM-----KQVQH   64 (329)
T ss_pred             CCCEEEEEEECCCCCEEEEEEECC--CCCEEEEEEEEHHHC----------------C----------CH-----HHHHH
T ss_conf             063898897327380999999989--998999999837884----------------5----------98-----99999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHH----HHHHHH
Q ss_conf             7888655999988987202446776643000010221783--3530024786324267733200225689----999999
Q gi|254780623|r  199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERL----SVTLVQ  272 (517)
Q Consensus       199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~l----a~~l~~  272 (517)
                            +.+|.+.+..++     +|.  |.+.|..+.+++  .+||||++|-.+-+.  +...+.-....    +..++.
T Consensus        65 ------~~~E~~il~~l~-----Hp~--Iv~l~~~f~~~~~lylvmEy~~gGdL~~~--l~~~~~l~e~~a~~~~~qi~~  129 (329)
T PTZ00263         65 ------VAQEKSILMELS-----HPF--IVNMMCSFQDENRVYFLLEFVVGGELFTH--LRKAGRFPNDVAKFYHAELVL  129 (329)
T ss_pred             ------HHHHHHHHHHCC-----CCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHH
T ss_conf             ------999999999779-----989--89099999989999999986899858999--976489999999999999999


Q ss_pred             HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             999989744866178786228980289535743403121698
Q gi|254780623|r  273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      + +.-+-..|+.|-|.-|.||+++.+|.+-+.|||+...++.
T Consensus       130 a-L~yLH~~~IiHRDLKPeNILl~~~g~vKL~DFGlak~~~~  170 (329)
T PTZ00263        130 A-FEYLHSKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPD  170 (329)
T ss_pred             H-HHHHHHCCCEECCCCCCCEEECCCCCEEECCHHHHHCCCC
T ss_conf             9-9999978886043354324674799886234055420675


No 117
>cd05069 PTKc_Yes Catalytic Domain of the Protein Tyrosine Kinase, Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an
Probab=98.72  E-value=3e-08  Score=83.12  Aligned_cols=144  Identities=16%  Similarity=0.184  Sum_probs=92.8

Q ss_pred             HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99867--6667788886555502128887236876403104688777788999875321146854334691799999998
Q gi|254780623|r  120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ  197 (517)
Q Consensus       120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~  197 (517)
                      ++++.  +.|+.|+.|.||+|+++.   +.+||||+.+++-.                           ..    +    
T Consensus         5 ~~~l~~~~~IG~G~fG~V~~g~~~~---~~~VAvK~~~~~~~---------------------------~~----~----   46 (260)
T cd05069           5 RESLRLDVKLGQGCFGEVWMGTWNG---TTKVAIKTLKPGTM---------------------------MP----E----   46 (260)
T ss_pred             HHHEEEEEEEECCCCCEEEEEEECC---CCEEEEEEECCCCC---------------------------CH----H----
T ss_conf             7996842798118886999999899---98999999876768---------------------------88----9----


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC-CEEEEECCCCCCCCHHHHHH-HHCCCHH---HHHHHHHH
Q ss_conf             8788865599998898720244677664300001022178-33530024786324267733-2002256---89999999
Q gi|254780623|r  198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER-DVITMEWIDGVKISDTEKLR-ACGHDLE---RLSVTLVQ  272 (517)
Q Consensus       198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~-~VLvmE~i~G~~i~d~~~l~-~~~~d~~---~la~~l~~  272 (517)
                            .|.+|++-+.+++.     |.|.  +.|.-.+.+ -.|+|||++|-++.+.-.-. ....+..   .++..++.
T Consensus        47 ------~f~~E~~~l~~l~H-----pnIv--~~~g~~~~~~~~iv~Ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~qia~  113 (260)
T cd05069          47 ------AFLQEAQIMKKLRH-----DKLV--PLYAVVSEEPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIAD  113 (260)
T ss_pred             ------HHHHHHHHHHHCCC-----CCEE--EEEEEECCCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             ------99999999986799-----8887--6746773697699998079998899997388886899999999999999


Q ss_pred             HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             9999897448661787862289802895357434031216989
Q gi|254780623|r  273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      +. .-+-..|+.|.|.-|.||++++++.+-+-|||+...+++.
T Consensus       114 gl-~yLH~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~  155 (260)
T cd05069         114 GM-AYIERMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDN  155 (260)
T ss_pred             HH-HHHHHCCEECCCCCCCEEEECCCCCEEEEECCCCEECCCC
T ss_conf             99-9997699034615637289879997898214652573688


No 118
>cd06652 STKc_MEKK2 Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays r
Probab=98.72  E-value=3.5e-08  Score=82.57  Aligned_cols=139  Identities=22%  Similarity=0.288  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-|+.|+-|+||+|+-.+  +|+.||||+.+-+-.                    .+        ..-.+. .      .
T Consensus         8 ~~lG~G~fg~Vy~a~~~~--tg~~vAvK~i~~~~~--------------------~~--------~~~~~~-~------~   50 (265)
T cd06652           8 KLLGQGAFGRVYLCYDAD--TGRELAVKQVQFDPE--------------------SP--------ETSKEV-N------A   50 (265)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEECCCC--------------------CH--------HHHHHH-H------H
T ss_conf             698318883999999889--997999999931635--------------------55--------679999-9------9


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC---CC-CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH--
Q ss_conf             5999988987202446776643000010221---78-33530024786324267733200225689999999999989--
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRT---ER-DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT--  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s---t~-~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi--  278 (517)
                      +.+|++-+..+..     +.  |.+.|.-+-   .. -.++|||++|-.+.+.  ++..+.    +.+..+..++.|+  
T Consensus        51 ~~~Ei~~l~~l~H-----pn--Iv~~~~~~~~~~~~~~~ivmEy~~gg~L~~~--l~~~~~----l~e~~~~~~~~qi~~  117 (265)
T cd06652          51 LECEIQLLKNLLH-----ER--IVQYYGCLRDPMERTLSIFMEHMPGGSIKDQ--LKSYGA----LTENVTRKYTRQILE  117 (265)
T ss_pred             HHHHHHHHHHCCC-----CC--EEEEEEEEECCCCCEEEEEEEECCCCCHHHH--HHHCCC----CCHHHHHHHHHHHHH
T ss_conf             9999999984799-----88--7318899980899889999970192988999--987499----999999999999999


Q ss_pred             -----HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             -----74486617878622898028953574340312169
Q gi|254780623|r  279 -----LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       279 -----~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                           -..|+.|-|.-|.||+++.+|.+-+.|||+...+.
T Consensus       118 al~ylH~~~IiHRDiKp~NIL~~~~g~vKl~DFGla~~~~  157 (265)
T cd06652         118 GVSYLHSNMIVHRDIKGANILRDSVGNVKLGDFGASKRLQ  157 (265)
T ss_pred             HHHHHHHCCEEECCCCHHHEEECCCCCEEEEECCCCCCCC
T ss_conf             9999997998535487898648899999996277541655


No 119
>cd07875 STKc_JNK1 The catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes
Probab=98.72  E-value=3.6e-08  Score=82.44  Aligned_cols=149  Identities=20%  Similarity=0.257  Sum_probs=83.6

Q ss_pred             HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             9867--66677888865555021288872368764031046887777889998753211468543346917999999988
Q gi|254780623|r  121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV  198 (517)
Q Consensus       121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  198 (517)
                      ..++  +.|++||-|+||+|+=+.  +|+.||||+.+-...+..                                ....
T Consensus        24 ~rY~i~~~IG~G~fG~V~~a~d~~--t~~~vAIK~i~~~~~~~~--------------------------------~~~~   69 (364)
T cd07875          24 KRYQNLKPIGSGAQGIVCAAYDAI--LERNVAIKKLSRPFQNQT--------------------------------HAKR   69 (364)
T ss_pred             CCEEEEEEEECCCCEEEEEEEECC--CCCEEEEEEECCHHCCHH--------------------------------HHHH
T ss_conf             674880896016386999999889--998999999892242968--------------------------------9999


Q ss_pred             HHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHHHH
Q ss_conf             7888655999988987202-446776643000010221783353002478632426773320022568---999999999
Q gi|254780623|r  199 TKMEMDLRLEAAAFSEMAE-NTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQSF  274 (517)
Q Consensus       199 l~~ElD~~~Ea~n~~~~~~-~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~~~  274 (517)
                      +.+|      ..-++.+.. |.-..-.+..|.-..+.-..-.+||||++|. +.+.  ++ ...+...   ++..++.+ 
T Consensus        70 ~~rE------i~il~~l~HpnIV~l~~~~~~~~~~~~~~~~yiV~E~~~~~-L~~~--i~-~~l~~~~i~~i~~Qil~a-  138 (364)
T cd07875          70 AYRE------LVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDAN-LCQV--IQ-MELDHERMSYLLYQMLCG-  138 (364)
T ss_pred             HHHH------HHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCC-HHHH--HH-HCCCHHHHHHHHHHHHHH-
T ss_conf             9999------99998679959995889994067555478189999567987-8999--87-339999999999999999-


Q ss_pred             HHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             9989744866178786228980289535743403121698
Q gi|254780623|r  275 LLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       275 ~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      +.-+-..|+.|.|.-|.||+++.+|.+-+.|||+....++
T Consensus       139 l~ylH~~~IiHRDlKP~NILl~~~~~iKi~DFGlAr~~~~  178 (364)
T cd07875         139 IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT  178 (364)
T ss_pred             HHHHHHCCCEECCCCHHHEEECCCCCEEEEECCCCCCCCC
T ss_conf             9999878834446888887888899889832123523588


No 120
>cd06653 STKc_MEKK3_like_1 Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating
Probab=98.72  E-value=3e-08  Score=83.04  Aligned_cols=143  Identities=19%  Similarity=0.250  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.||-|.||+|+-.+  +|+.||||+..-+-                       ..     .....+.       -.
T Consensus         8 ~~iG~G~fg~Vy~~~~~~--tg~~~AvK~i~~~~-----------------------~~-----~~~~~~~-------~~   50 (264)
T cd06653           8 KLLGRGAFGEVYLCYDAD--TGRELAVKQVPFDP-----------------------DS-----QETSKEV-------NA   50 (264)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECCCC-----------------------CH-----HHHHHHH-------HH
T ss_conf             597228684999999889--99799999985673-----------------------24-----6659999-------99


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC-CCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH------
Q ss_conf             59999889872024467766430000102217-83353002478632426773320022568999999999998------
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE-RDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH------  277 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st-~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q------  277 (517)
                      +.+|.+.+.+++..    .-|..=.++.+... .-.+||||++|-.+.+.  ++..+.    +.+..+..|+.|      
T Consensus        51 ~~~Ei~~l~~l~Hp----nIv~~~~~~~~~~~~~~~ivmEy~~gg~L~~~--l~~~~~----l~e~~~~~~~~qi~~al~  120 (264)
T cd06653          51 LECEIQLLKNLRHD----RIVQYYGCLRDPEEKKLSIFVEYMPGGSIKDQ--LKAYGA----LTENVTRRYTRQILQGVS  120 (264)
T ss_pred             HHHHHHHHHHCCCC----CCCCEEEEEECCCCCEEEEEEECCCCCCHHHH--HHHCCC----CCHHHHHHHHHHHHHHHH
T ss_conf             99999999877999----97839999993899889999981495988999--987499----999999999999999999


Q ss_pred             -HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             -9744866178786228980289535743403121698
Q gi|254780623|r  278 -TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       278 -i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                       +-..|+.|-|.-|.||+++.+|.+-+.|||+...+..
T Consensus       121 ylH~~~iiHRDiKp~NIL~~~~~~vKl~DFG~a~~~~~  158 (264)
T cd06653         121 YLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRIQT  158 (264)
T ss_pred             HHHHCCEEECCCCHHHEEECCCCCEEEEECCCCCCCCC
T ss_conf             99979977665778995488999999986898726553


No 121
>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (Repeat 2) Domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th
Probab=98.72  E-value=9.1e-08  Score=79.35  Aligned_cols=144  Identities=17%  Similarity=0.202  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHHHEE--CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021--2888723687640310468877778899987532114685433469179999999887888
Q gi|254780623|r  125 DPIAAASIAQVHPAVVH--DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME  202 (517)
Q Consensus       125 ePlasASiaQVh~A~l~--d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E  202 (517)
                      +.|++|+-|+||+|+.+  ++++|+.||||..+..-                              .   ++       .
T Consensus        10 ~~iG~G~fG~V~~~~~~~~~~~~g~~vAiK~~~~~~------------------------------~---~~-------~   49 (284)
T cd05081          10 QQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHST------------------------------A---EH-------L   49 (284)
T ss_pred             EEECCCCCEEEEEEEECCEECCCCCEEEEEEECCCC------------------------------H---HH-------H
T ss_conf             997147385999879825057888199999988778------------------------------6---88-------9


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC-EEEEECCCCCCCCHHHHHHHHCCC---HHHHHHHHHHHHHHHH
Q ss_conf             655999988987202446776643000010221783-353002478632426773320022---5689999999999989
Q gi|254780623|r  203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD-VITMEWIDGVKISDTEKLRACGHD---LERLSVTLVQSFLLHT  278 (517)
Q Consensus       203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~-VLvmE~i~G~~i~d~~~l~~~~~d---~~~la~~l~~~~~~qi  278 (517)
                      -+|.+|++.+..++.-.    -|.+=.+..+-..+. .|||||++|-++.+.-.-.....+   ...++..++.. +.-+
T Consensus        50 ~~~~~Ei~il~~l~HpN----Iv~~~g~~~~~~~~~~~lV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~~~ia~g-l~yL  124 (284)
T cd05081          50 RDFEREIEILKSLQHDN----IVKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKG-MEYL  124 (284)
T ss_pred             HHHHHHHHHHHHCCCCC----EEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHH
T ss_conf             99999999999768998----825888997289967999996489899899997478889999999999999999-9988


Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             74486617878622898028953574340312169
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                      -..|+.|.|.-|.||+++.++++.+-|||+...++
T Consensus       125 H~~~iiHrDlK~~NILld~~~~~Kl~DFGla~~~~  159 (284)
T cd05081         125 GSKRYVHRDLATRNILVESENRVKIGDFGLTKVLP  159 (284)
T ss_pred             HHCCCCCCCCCHHEEEECCCCCEEEECCCCCEECC
T ss_conf             33891416676420798899958990367522668


No 122
>cd06625 STKc_MEKK3_like Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 a
Probab=98.72  E-value=3.3e-08  Score=82.74  Aligned_cols=140  Identities=19%  Similarity=0.246  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-|+.|+-|.||+|+-..  +|+.||||+.+..-...   +                         .-+++       -.
T Consensus         8 ~~lG~G~fg~V~~~~~~~--~g~~vAvK~i~~~~~~~---~-------------------------~~~~~-------~~   50 (263)
T cd06625           8 KLLGQGAFGRVYLCYDVD--TGRELAVKQVPFDPDSP---E-------------------------TKKEV-------NA   50 (263)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEECCCCCH---H-------------------------HHHHH-------HH
T ss_conf             197217583999999889--99799999981211776---7-------------------------89999-------99


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH----
Q ss_conf             599998898720244677664300001022178--33530024786324267733200225689999999999989----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT----  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi----  278 (517)
                      +.+|++.+.++..     |.|  -+.|.-+.++  -.+||||++|-.+.+.-  +..+.    +.+..+..++.|+    
T Consensus        51 ~~~Ei~il~~l~H-----p~I--v~~~~~~~~~~~~~ivmEy~~~g~L~~~l--~~~~~----~~e~~~~~~~~Qi~~al  117 (263)
T cd06625          51 LECEIQLLKNLQH-----ERI--VQYYGCLRDDETLSIFMEYMPGGSVKDQL--KAYGA----LTETVTRKYTRQILEGV  117 (263)
T ss_pred             HHHHHHHHHHCCC-----CCC--CCEEEEEEECCEEEEEEECCCCCCHHHHH--HHCCC----CCHHHHHHHHHHHHHHH
T ss_conf             9999999986799-----898--95999999899999999776988789999--88399----99999999999999999


Q ss_pred             ---HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             ---744866178786228980289535743403121698
Q gi|254780623|r  279 ---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       279 ---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                         -..|+.|-|.-|.||+++.+|.+-+.|||....++.
T Consensus       118 ~ylH~~~IiHRDlKp~NiLl~~~g~vKl~DFG~a~~~~~  156 (263)
T cd06625         118 EYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQT  156 (263)
T ss_pred             HHHHHCCEEEEECCHHHEEECCCCCEEEEECCCCEECCC
T ss_conf             999989946720768986888999999983787615454


No 123
>cd05066 PTKc_EphR_A Catalytic Domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul
Probab=98.71  E-value=8.3e-08  Score=79.67  Aligned_cols=146  Identities=15%  Similarity=0.219  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHHHHEECCC-CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             6766677888865555021288-872368764031046887777889998753211468543346917999999988788
Q gi|254780623|r  123 FDDPIAAASIAQVHPAVVHDIN-GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKM  201 (517)
Q Consensus       123 fdePlasASiaQVh~A~l~d~~-~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~  201 (517)
                      +++.|++|+-|+||+|+++..+ ....||||+.+.+..+.                                       .
T Consensus         8 i~~~iG~G~fG~Vy~~~~~~~~~~~~~VAiK~l~~~~~~~---------------------------------------~   48 (267)
T cd05066           8 IERVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEK---------------------------------------Q   48 (267)
T ss_pred             EEEEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCHH---------------------------------------H
T ss_conf             8369941789599999997799767999999978666979---------------------------------------9


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCC-CCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHHHHHHH
Q ss_conf             865599998898720244677664-3000010221783353002478632426773320022568---999999999998
Q gi|254780623|r  202 EMDLRLEAAAFSEMAENTVKDQGF-RVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQSFLLH  277 (517)
Q Consensus       202 ElD~~~Ea~n~~~~~~~~~~~~~v-~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~~~~~q  277 (517)
                      .-+|.+|++.+.+++.     |.| .+=.++. -...-.|||||++|-.+.+.-.-.....+..+   ++..++.. +.-
T Consensus        49 ~~~f~~E~~il~~l~H-----pnIv~l~g~~~-~~~~~~lv~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~ia~g-l~y  121 (267)
T cd05066          49 RRDFLGEASIMGQFDH-----PNIIHLEGVVT-KSKPVMIVTEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASG-MKY  121 (267)
T ss_pred             HHHHHHHHHHHHHCCC-----CCEEEEEEEEC-CCCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHH
T ss_conf             9999999999986899-----88824999984-4998999998379997899997368999999999999999999-999


Q ss_pred             HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             9744866178786228980289535743403121698
Q gi|254780623|r  278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      +-..|+.|.|.-|.||+++.++.+-+-|||+...+..
T Consensus       122 Lh~~~iiHRDlK~~NiLl~~~~~~Ki~DFGls~~~~~  158 (267)
T cd05066         122 LSDMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLED  158 (267)
T ss_pred             HHHCCEECCCCCCCEEEECCCCCEEECCCCCCEECCC
T ss_conf             9669855466762548988999889854766568778


No 124
>cd05118 STKc_CMGC The catalytic domain of CMGC family Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. 
Probab=98.71  E-value=3.1e-08  Score=83.03  Aligned_cols=138  Identities=19%  Similarity=0.238  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|++|+-|.||+|+-++  +|+.||+|+.+..-..                    +            .....      
T Consensus         5 ~~lG~G~fg~Vy~~~~~~--~~~~~AiK~i~~~~~~--------------------~------------~~~~~------   44 (283)
T cd05118           5 GKIGEGTYGVVYKARDKL--TGEIVAIKKIKLRFES--------------------E------------GIPKT------   44 (283)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHCC--------------------H------------HHHHH------
T ss_conf             894226694999999889--9989999998334539--------------------5------------88999------


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH----
Q ss_conf             5999988987202446776643000010221--7833530024786324267733200225689999999999989----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT----  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi----  278 (517)
                      ..+|++.+.+++.     |.  |-+.|.-+.  +.-.+||||++|--...+.   ..+   ..+-+..+..+++|+    
T Consensus        45 ~~~E~~il~~l~H-----pn--Iv~~~~~~~~~~~~~lvmEy~~~~l~~~l~---~~~---~~l~e~~~~~~~~qil~al  111 (283)
T cd05118          45 ALREIKLLKELNH-----PN--IIKLLDVFRHKGDLYLVFEFMDTDLYKLIK---DRQ---RGLPESLIKSYLYQLLQGL  111 (283)
T ss_pred             HHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCHHHHHH---HCC---CCCCHHHHHHHHHHHHHHH
T ss_conf             9999999986799-----89--893999999899999998177886579999---728---9989999999999999999


Q ss_pred             ---HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             ---7448661787862289802895357434031216989
Q gi|254780623|r  279 ---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       279 ---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                         -..|+.|.|.-|-||+++.+|.+-+.|||+...+++.
T Consensus       112 ~yLH~~~IiHRDlKPeNILl~~~~~iKl~DFG~a~~~~~~  151 (283)
T cd05118         112 AFCHSHGILHRDLKPENLLINTEGVLKLADFGLARSFGSP  151 (283)
T ss_pred             HHHHHCCEEECCCCHHHEEECCCCCEEEEEECCCEECCCC
T ss_conf             9999799660437656668989998899840456252688


No 125
>cd07830 STKc_MAK_like The catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fer
Probab=98.71  E-value=2.6e-08  Score=83.63  Aligned_cols=139  Identities=17%  Similarity=0.327  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.||+|+-|.||+|+-+.  +|+.||||+.+..-                           .+.    +        |..
T Consensus         5 ~~iG~G~fg~V~~~~~~~--~~~~vAvK~i~~~~---------------------------~~~----~--------~~~   43 (283)
T cd07830           5 KQLGDGTFGSVYLARNKE--TGELVAIKKMKKKF---------------------------YSW----E--------ECM   43 (283)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECCCC---------------------------CCH----H--------HHH
T ss_conf             898417286999999889--99899999988013---------------------------897----8--------999


Q ss_pred             HHHHHHHHHHHHCCCCCCCC-CCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-----
Q ss_conf             59999889872024467766-430000102217833530024786324267733200225689999999999989-----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQG-FRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT-----  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi-----  278 (517)
                      ..+|...+.++.    +.+. |..=.++.+ ...-.+||||++| .+.+.  +....  ...+.+..+..+++|+     
T Consensus        44 ~~~E~~~l~~~~----~hpnIv~~~~~~~~-~~~~~iVmEy~~g-~l~~~--l~~~~--~~~~~e~~i~~~~~Ql~~al~  113 (283)
T cd07830          44 NLREVKSLRKLN----EHPNIVKLKEVFRE-NDELYFVFEYMEG-NLYQL--MKDRK--GKPFSESVIRSIIYQILQGLA  113 (283)
T ss_pred             HHHHHHHHHHHC----CCCCEEEEEEEEEE-CCEEEEEEECCCC-CHHHH--HHHCC--CCCCCHHHHHHHHHHHHHHHH
T ss_conf             999999999716----99988268789988-9999999968899-87999--98627--999899999999999999999


Q ss_pred             --HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             --744866178786228980289535743403121698
Q gi|254780623|r  279 --LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       279 --~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                        -..|++|.|.-|.||+++.+|.+-+.|||+...+..
T Consensus       114 ylH~~~iiHRDIKP~NILl~~~~~iKl~DFG~a~~~~~  151 (283)
T cd07830         114 HIHKHGFFHRDLKPENLLVSGPEVVKIADFGLAREIRS  151 (283)
T ss_pred             HHHHCCCCCCCCCHHHEEECCCCCEEEEECCCCEECCC
T ss_conf             99979936365767997987899889974477656566


No 126
>cd06642 STKc_STK25_YSK1 Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares feat
Probab=98.71  E-value=3.3e-08  Score=82.78  Aligned_cols=148  Identities=19%  Similarity=0.261  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf             99999986766677888865555021288872368764031046887777889998753211468543346917999999
Q gi|254780623|r  116 IEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL  195 (517)
Q Consensus       116 ~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~  195 (517)
                      +++.|... +.|+.||-|.||+|+-..  +|+.||||+....-                     ..           ++.
T Consensus         2 p~e~y~~l-~~iG~G~fg~Vy~~~~~~--~~~~vAiK~i~~~~---------------------~~-----------~~~   46 (277)
T cd06642           2 PEELFTKL-ERIGKGSFGEVYKGIDNR--TKEVVAIKIIDLEE---------------------AE-----------DEI   46 (277)
T ss_pred             HHHCEEEE-EEEECCCCCEEEEEEECC--CCCEEEEEEECHHH---------------------CH-----------HHH
T ss_conf             46820985-896027782999999899--99699999985788---------------------84-----------799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHH
Q ss_conf             988788865599998898720244677664300001022178--3353002478632426773320022568---99999
Q gi|254780623|r  196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLER---LSVTL  270 (517)
Q Consensus       196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l  270 (517)
                             -++.+|++.+.++..     |.  |-+.|..+.+.  -.+||||++|-.+.+.-  +....+-..   ++..+
T Consensus        47 -------~~~~~Ei~il~~l~h-----pn--Iv~~~~~~~~~~~~~ivmEy~~gg~L~~~l--~~~~l~e~~~~~i~~qi  110 (277)
T cd06642          47 -------EDIQQEITVLSQCDS-----PY--ITRYYGSYLKGTKLWIIMEYLGGGSALDLL--KPGPLEETYIATILREI  110 (277)
T ss_pred             -------HHHHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHHH--HCCCCCHHHHHHHHHHH
T ss_conf             -------999999999986799-----88--895999999899999999799959999998--44999999999999999


Q ss_pred             HHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             999999897448661787862289802895357434031216989
Q gi|254780623|r  271 VQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       271 ~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      +.+ +.-+-..|+.|-|.-|.||+++.+|.+-+.|||+...+++.
T Consensus       111 ~~a-l~ylH~~~iiHRDlKp~NILl~~~~~vKl~DFGla~~~~~~  154 (277)
T cd06642         111 LKG-LDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDT  154 (277)
T ss_pred             HHH-HHHHHHCCCCCCCCCCCCCEECCCCCEEEEEECEEEECCCC
T ss_conf             999-99999789550424743111668998888431203551588


No 127
>cd05082 PTKc_Csk Catalytic Domain of the Protein Tyrosine Kinase, C-terminal Src kinase. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re
Probab=98.70  E-value=9.5e-08  Score=79.20  Aligned_cols=144  Identities=19%  Similarity=0.228  Sum_probs=90.4

Q ss_pred             HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99867--6667788886555502128887236876403104688777788999875321146854334691799999998
Q gi|254780623|r  120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ  197 (517)
Q Consensus       120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~  197 (517)
                      +++++  +.|++||.|.||+|..+    |++||||+.+.        |                        ...+    
T Consensus         5 ~~~~~~~~~iG~G~fg~V~~~~~~----g~~vAvK~i~~--------~------------------------~~~~----   44 (256)
T cd05082           5 MKELKLLQTIGKGEFGDVMLGDYR----GNKVAVKCIKN--------D------------------------ATAQ----   44 (256)
T ss_pred             HHHEEEEEEEEECCCCEEEEEEEC----CEEEEEEEECC--------C------------------------CCHH----
T ss_conf             799797459820898389999989----93999999787--------3------------------------0599----


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHH-CCCHH---HHHHHHHHH
Q ss_conf             87888655999988987202446776643000010221783353002478632426773320-02256---899999999
Q gi|254780623|r  198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRAC-GHDLE---RLSVTLVQS  273 (517)
Q Consensus       198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~-~~d~~---~la~~l~~~  273 (517)
                            +|.+|+..+.+++.-    .-|.+=.+..+-.+.-.+||||++|-++.+.-.-+.. ..+..   .++..++++
T Consensus        45 ------~f~~E~~~l~~l~Hp----nIv~~~g~~~~~~~~~~iv~Ey~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~g  114 (256)
T cd05082          45 ------AFLAEASVMTQLRHS----NLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEA  114 (256)
T ss_pred             ------HHHHHHHHHHHCCCC----CCCEEEEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             ------999999999857998----9880999999379829999974899978998865699779999999999999999


Q ss_pred             HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             99989744866178786228980289535743403121698
Q gi|254780623|r  274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                       +..+-..|+.|.|.-|.||+++.++.+.+-|||+....+.
T Consensus       115 -l~yLH~~~iiHrDlK~~NiLv~~~~~~Kl~DFGls~~~~~  154 (256)
T cd05082         115 -MEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS  154 (256)
T ss_pred             -HHHHHHCCCCCCCCCHHHEEECCCCCEEEEECCCCEECCC
T ss_conf             -9999739937775776228898999289800577707777


No 128
>cd06622 PKc_MAPKK_PBS2_like Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cer
Probab=98.70  E-value=4.1e-08  Score=82.05  Aligned_cols=142  Identities=16%  Similarity=0.227  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.||.|+-|.||+|+-+.  +|+.||+|+.+....+                             .-++          .
T Consensus         7 ~~IG~G~fg~Vy~a~~~~--t~~~vAiK~i~~~~~~-----------------------------~~~~----------~   45 (286)
T cd06622           7 DELGKGNYGSVYKVLHRP--TGVTMAMKEIRLELDE-----------------------------SKFN----------Q   45 (286)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHCH-----------------------------HHHH----------H
T ss_conf             896138790999999989--9969999998644098-----------------------------9999----------9


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHH-H-HHCCCH---HHHHHHHHHHHHHH
Q ss_conf             599998898720244677664300001022178--3353002478632426773-3-200225---68999999999998
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKL-R-ACGHDL---ERLSVTLVQSFLLH  277 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l-~-~~~~d~---~~la~~l~~~~~~q  277 (517)
                      +.+|...+.++..     |.  |-+.|..+.++  -.+||||++|-.+.++-.. . ..+.+.   ..++..++.+.-..
T Consensus        46 ~~~Ei~il~~l~h-----pn--Iv~l~~~~~~~~~~~ivmE~~~~G~L~~l~~~~~~~~~~~e~~~~~i~~ql~~gL~yl  118 (286)
T cd06622          46 IIMELDILHKAVS-----PY--IVDFYGAFFIEGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFL  118 (286)
T ss_pred             HHHHHHHHHHCCC-----CC--EECCCEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             9999999986799-----98--9435418998998999998079991999986033357899999999999999999999


Q ss_pred             HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             9744866178786228980289535743403121698
Q gi|254780623|r  278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      --..|+.|-|.-|.||+++.+|.+-+.|||+.+.+..
T Consensus       119 H~~~~IiHRDIKP~NILi~~~g~vKl~DFG~a~~~~~  155 (286)
T cd06622         119 KEEHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVA  155 (286)
T ss_pred             HHHCCEEECCCCHHHEEECCCCCEEEEECCCCCCCCC
T ss_conf             8728974155777766688999899973788866566


No 129
>cd05626 STKc_LATS2 STKc_LATS2: Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with poor prognosis in acute lymphoblastic leukemia and breast cancer.
Probab=98.70  E-value=2.3e-08  Score=84.01  Aligned_cols=139  Identities=22%  Similarity=0.321  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.||-|+||+|+-++  +|+.||+|+.+..       +         ...+               +....+     
T Consensus         7 k~LG~G~fG~V~la~~~~--tg~~~AiK~i~k~-------~---------~~~~---------------~~~~~~-----   48 (381)
T cd05626           7 KTLGIGAFGEVCLACKVD--THALYAMKTLRKK-------D---------VLNR---------------NQVAHV-----   48 (381)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEEHH-------H---------CCCH---------------HHHHHH-----
T ss_conf             287138784999999889--9988999998067-------8---------5598---------------999999-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHH----HHHHHHHHHHHH
Q ss_conf             5999988987202446776643000010221783--3530024786324267733200225689----999999999989
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERL----SVTLVQSFLLHT  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~l----a~~l~~~~~~qi  278 (517)
                       .+|.+-+.+..     .+  .|.+.|..+.++.  .|||||++|-.+.+.  +...+.-....    +..++.+ +.-+
T Consensus        49 -~~E~~il~~~~-----hp--~Iv~l~~~f~~~~~~ylvmEy~~gGdL~~~--l~~~~~~~e~~a~~~~~qi~~a-L~yl  117 (381)
T cd05626          49 -KAERDILAEAD-----NE--WVVKLYYSFQDKDNLYFVMDYIPGGDMMSL--LIRMEVFPEVLARFYIAELTLA-IESV  117 (381)
T ss_pred             -HHHHHHHHHCC-----CC--CCCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHH
T ss_conf             -99999998689-----98--979499999989999999974799828787--7634999999999999999999-9999


Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC
Q ss_conf             7448661787862289802895357434031216
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL  312 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l  312 (517)
                      -..|+.|-|.-|.||+++.+|.+-+.|||++..+
T Consensus       118 H~~gIiHRDLKPeNILl~~~g~iKL~DFGla~~~  151 (381)
T cd05626         118 HKMGFIHRDIKPDNILIDLDGHIKLTDFGLCTGF  151 (381)
T ss_pred             HHCCCCCCCCCCCEEEECCCCCEEECCCCCCCCC
T ss_conf             8666730215467367889998898156765344


No 130
>cd07850 STKc_JNK The catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different
Probab=98.70  E-value=2e-08  Score=84.41  Aligned_cols=153  Identities=18%  Similarity=0.229  Sum_probs=84.7

Q ss_pred             HHHHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf             9999867--66677888865555021288872368764031046887777889998753211468543346917999999
Q gi|254780623|r  118 ELYCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL  195 (517)
Q Consensus       118 ~~F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~  195 (517)
                      ++...++  +.|+.||-|+||+|+-+.  +|+.||||+.+.......                                .
T Consensus        13 ~v~~rY~i~~~lG~G~fG~V~~a~d~~--t~~~vAiK~i~~~~~~~~--------------------------------~   58 (353)
T cd07850          13 TVLKRYQNLKPIGSGAQGIVCAAYDTV--TKQNVAIKKLSRPFQNVT--------------------------------H   58 (353)
T ss_pred             CCCCCCEEEEEEECCCCEEEEEEEECC--CCCEEEEEEECHHHCCHH--------------------------------H
T ss_conf             030262883697314084999999889--998999999883453828--------------------------------8


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHH
Q ss_conf             9887888655999988987202-446776643000010221783353002478632426773320022568---999999
Q gi|254780623|r  196 EQVTKMEMDLRLEAAAFSEMAE-NTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLV  271 (517)
Q Consensus       196 ~~~l~~ElD~~~Ea~n~~~~~~-~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~  271 (517)
                      .....      +|...+..+.. |.-..-++..|+-.-+-...-.+||||++|- +.+.-   ....+...   ++..++
T Consensus        59 ~~~~~------rEi~~l~~l~HpnIv~l~~~f~~~~~~~~~~~~yivmE~~~~~-L~~~~---~~~l~~~~~~~i~~Qil  128 (353)
T cd07850          59 AKRAY------RELVLMKLVNHKNIIGLLNAFTPQKSLEEFQDVYLVMELMDAN-LCQVI---QMDLDHERMSYLLYQML  128 (353)
T ss_pred             HHHHH------HHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCC-HHHHH---HCCCCHHHHHHHHHHHH
T ss_conf             99999------9999998679969993888984066433276389999417998-99998---60399999999999999


Q ss_pred             HHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             99999897448661787862289802895357434031216989
Q gi|254780623|r  272 QSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       272 ~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      .+ +.-+-..|+.|.|.-|.||+++.+|.+-+.|||+.......
T Consensus       129 ~a-L~ylH~~gIiHRDLKPeNILl~~~~~vKL~DFGlA~~~~~~  171 (353)
T cd07850         129 CG-IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTS  171 (353)
T ss_pred             HH-HHHHHHCCCEECCCCHHHEEECCCCCEEECCCCHHEECCCC
T ss_conf             99-99998789355668757779989997862231220003688


No 131
>cd06633 STKc_TAO3 Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pa
Probab=98.70  E-value=7.4e-08  Score=80.07  Aligned_cols=151  Identities=17%  Similarity=0.167  Sum_probs=91.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf             89999998676667788886555502128887236876403104688777788999875321146854334691799999
Q gi|254780623|r  115 PIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRA  194 (517)
Q Consensus       115 ~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e  194 (517)
                      ++++.|... +.|+.||-|.||+|+-+.  +|+.||||+....-..                          + .+    
T Consensus        18 dp~~~y~~l-~~IG~G~fg~Vy~a~~~~--tg~~vAiK~i~~~~~~--------------------------~-~~----   63 (313)
T cd06633          18 DPEEIFVGL-HEIGHGSFGAVYFATNSH--TNEVVAVKKMSYSGKQ--------------------------T-NE----   63 (313)
T ss_pred             CHHHHEEEE-EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHCC--------------------------C-HH----
T ss_conf             968842423-896037585999999889--9989999998634413--------------------------6-59----


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHH---HHHHH
Q ss_conf             99887888655999988987202446776643000010221783--35300247863242677332002256---89999
Q gi|254780623|r  195 LEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLE---RLSVT  269 (517)
Q Consensus       195 ~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~  269 (517)
                      -      .-++.+|.+.+.+++.     |.|.  +.|.-+.+++  .+||||++|-..+... ......+-.   .++..
T Consensus        64 ~------~~~~~~Ei~il~~l~H-----pnIV--~~~~~~~~~~~~yivmEy~~G~~~~~l~-~~~~~l~e~~~~~i~~q  129 (313)
T cd06633          64 K------WQDIIKEVKFLQQLKH-----PNTI--EYKGCYLKEHTAWLVMEYCLGSASDLLE-VHKKPLQEVEIAAITHG  129 (313)
T ss_pred             H------HHHHHHHHHHHHHCCC-----CCCC--CEEEEEEECCEEEEEEEECCCCHHHHHH-HHCCCCCHHHHHHHHHH
T ss_conf             9------9999999999997799-----8999--0989999899889999962797378999-83689999999999999


Q ss_pred             HHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             999999989744866178786228980289535743403121698
Q gi|254780623|r  270 LVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       270 l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      ++.+ +.-+-..|+.|-|.-|.||+++.+|.+-+.|||+....++
T Consensus       130 il~a-L~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFG~a~~~~~  173 (313)
T cd06633         130 ALQG-LAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASKSSP  173 (313)
T ss_pred             HHHH-HHHHHHCCEEECCCCHHHEEECCCCCEEEEECCCCEECCC
T ss_conf             9999-9999868966530666555688999989985178664379


No 132
>cd07839 STKc_CDK5 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5 subfamily. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiatio
Probab=98.70  E-value=1.9e-08  Score=84.59  Aligned_cols=138  Identities=17%  Similarity=0.290  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.||.||-|.||+|+-++  +|+.||||+.+..-..                                +.......    
T Consensus         6 ~~iG~G~fg~V~~~~~~~--t~~~vAiK~i~~~~~~--------------------------------~~~~~~~~----   47 (284)
T cd07839           6 EKIGEGTYGTVFKAKNRE--THEIVALKRVRLDDDD--------------------------------EGVPSSAL----   47 (284)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEECCCCC--------------------------------HHHHHHHH----
T ss_conf             482047283999999889--9979999998303464--------------------------------67799999----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHH--CCCH---HHHHHHHHHHHHHH
Q ss_conf             599998898720244677664300001022178--3353002478632426773320--0225---68999999999998
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRAC--GHDL---ERLSVTLVQSFLLH  277 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~--~~d~---~~la~~l~~~~~~q  277 (517)
                        +|.+.+..+..     |.  |-+.|.-+.++  -.+||||++| .+.+.  +...  ..+.   +.+...++.+. .-
T Consensus        48 --~Ei~il~~l~h-----pn--Iv~~~~~~~~~~~~~ivmE~~~~-~l~~~--~~~~~~~~~~~~~~~~~~qil~gl-~y  114 (284)
T cd07839          48 --REICLLKELKH-----KN--IVRLYDVLHSDKKLTLVFEYCDQ-DLKKY--FDSCNGDIDPEIVKSFMFQLLKGL-AF  114 (284)
T ss_pred             --HHHHHHHHCCC-----CC--CCCEEEEECCCCEEEEEEECCCC-CHHHH--HHHHCCCCCHHHHHHHHHHHHHHH-HH
T ss_conf             --99999986799-----99--72021125009979999960797-78999--997279999999999999999999-99


Q ss_pred             HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             974486617878622898028953574340312169
Q gi|254780623|r  278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                      +-..|+.|-|.-|.||+++.+|.+-+.|||+...++
T Consensus       115 lH~~~IiHRDiKpeNILl~~~~~vKL~DFGla~~~~  150 (284)
T cd07839         115 CHSHNVLHRDLKPQNLLINKNGELKLADFGLARAFG  150 (284)
T ss_pred             HHHCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCC
T ss_conf             986985712177302688899999995517663169


No 133
>cd05575 STKc_SGK STKc_SGK: Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis.
Probab=98.70  E-value=2.8e-08  Score=83.31  Aligned_cols=134  Identities=18%  Similarity=0.237  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67788886555502128887236876403104688777788999875321146854334691799999998878886559
Q gi|254780623|r  127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR  206 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~  206 (517)
                      |+.||-|+||+|+-+.  +|+.||+|+.+...-                .+.               .-...+..|    
T Consensus         3 LG~G~fG~V~~a~~k~--t~~~~AiK~i~k~~~----------------~~~---------------~~~~~~~~E----   45 (323)
T cd05575           3 IGKGSFGKVLLAKHKE--DGKFYAVKVLQKKAI----------------LKK---------------NEQKHIMAE----   45 (323)
T ss_pred             EEECCCEEEEEEEECC--CCCEEEEEEECHHHC----------------CCH---------------HHHHHHHHH----
T ss_conf             7328495999999889--998999999827883----------------587---------------899999999----


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH------
Q ss_conf             9998898720244677664300001022178--33530024786324267733200225689999999999989------
Q gi|254780623|r  207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT------  278 (517)
Q Consensus       207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi------  278 (517)
                        ...+   .++. ++|.  |.+.|..+.++  -.+||||++|-.+.+.  +...+.    +.+.-+..|+.|+      
T Consensus        46 --~~il---~~~l-~Hp~--Iv~l~~~f~~~~~~ylvmEy~~gGdL~~~--l~~~~~----l~e~~a~~~~~qi~~aL~y  111 (323)
T cd05575          46 --RNVL---LKNV-KHPF--LVGLHYSFQTKEKLYFVLDYVNGGELFFH--LQRERS----FPEPRARFYAAEIASALGY  111 (323)
T ss_pred             --HHHH---HHHC-CCCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCC----CCHHHHHHHHHHHHHHHHH
T ss_conf             --9999---9868-9998--89499999989999999968899888999--987499----9999999999999999999


Q ss_pred             -HHCCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             -744866178786228980289535743403121
Q gi|254780623|r  279 -LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       279 -~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                       -..|+.|-|.-|.||+++.+|.+.+.|||+...
T Consensus       112 lH~~~IiHRDLKPeNILl~~~g~ikL~DFGlak~  145 (323)
T cd05575         112 LHSLNIIYRDLKPENILLDSKGHVVLTDFGLCKE  145 (323)
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCEEEEECHHHHH
T ss_conf             9987944356674333205899788602015343


No 134
>cd05583 STKc_MSK_N STKc_MSK_N: Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active
Probab=98.70  E-value=1.3e-07  Score=78.07  Aligned_cols=146  Identities=12%  Similarity=0.193  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHHEE-CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021-28887236876403104688777788999875321146854334691799999998878886
Q gi|254780623|r  125 DPIAAASIAQVHPAVVH-DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM  203 (517)
Q Consensus       125 ePlasASiaQVh~A~l~-d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El  203 (517)
                      +.||.|+-|+||.|+-. +..+|+.||||+.+..-.   ..+-.                       ..+    .     
T Consensus         6 ~~iG~G~fg~V~~a~~~~~~~~~~~~AiK~~~k~~~---~~~~~-----------------------~~~----~-----   50 (288)
T cd05583           6 RVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATI---VQKAK-----------------------TAE----H-----   50 (288)
T ss_pred             EEEECCCCEEEEEEEECCCCCCCCEEEEEEECHHHH---HHHHH-----------------------HHH----H-----
T ss_conf             794148883999999855378795899999807884---12267-----------------------899----9-----


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHHHCCC---HHHHHHHHHHHHHHHH
Q ss_conf             559999889872024467766430000102217--83353002478632426773320022---5689999999999989
Q gi|254780623|r  204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRACGHD---LERLSVTLVQSFLLHT  278 (517)
Q Consensus       204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~~~~d---~~~la~~l~~~~~~qi  278 (517)
                       ...|...+.....    .+.  |.+.|.-+.+  .-.+||||++|-.+.+.-. +....+   -+.++..++.+ ++-+
T Consensus        51 -~~~E~~~l~~l~~----~~~--Iv~l~~~~~~~~~~yivmE~~~gg~L~~~l~-~~~~l~e~~~~~~~~qil~~-l~yl  121 (288)
T cd05583          51 -TRTERQVLEAVRR----CPF--LVTLHYAFQTDTKLHLILDYVNGGELFTHLY-QREHFTESEVRVYIAEIVLA-LDHL  121 (288)
T ss_pred             -HHHHHHHHHHCCC----CCC--EEEEEEEEEECCEEEEEEECCCCCCHHHHHH-HCCCCCHHHHHHHHHHHHHH-HHHH
T ss_conf             -9999999997059----997--7799999998999999997889988999998-75998999999999999999-9999


Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             744866178786228980289535743403121698
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      -..|+.|-|..|.||+++.+|++.+.|||+...+..
T Consensus       122 H~~~ivHRDiKp~NILi~~~~~ikl~DFG~a~~~~~  157 (288)
T cd05583         122 HQLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLA  157 (288)
T ss_pred             HHCCEEECCCCHHHCCCCCCCCEEEEECCCCEECCC
T ss_conf             988903166771324345889989988675734358


No 135
>cd05628 STKc_NDR1 STKc_NDR1: Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, muscle, lung and spleen. It is not an essential protein because mice deficient o
Probab=98.70  E-value=4e-08  Score=82.15  Aligned_cols=146  Identities=24%  Similarity=0.293  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|++||-|+||+|+-++  +|+.||+|+.+..       +         +.++               +-...+..|  
T Consensus         7 k~iG~G~fG~V~~~~~~~--tg~~~AiK~i~k~-------~---------~~~~---------------~~~~~~~~E--   51 (363)
T cd05628           7 KVIGRGAFGEVRLVQKKD--TGHVYAMKILRKA-------D---------MLEK---------------EQVGHIRAE--   51 (363)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECHH-------H---------CCCH---------------HHHHHHHHH--
T ss_conf             582128684999999899--9989999998167-------8---------1589---------------999999999--


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCC-CH---HHHHHHHHHHHHHHH
Q ss_conf             5999988987202446776643000010221783--35300247863242677332002-25---689999999999989
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGH-DL---ERLSVTLVQSFLLHT  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~-d~---~~la~~l~~~~~~qi  278 (517)
                          ...+...     +++  .|.+.|..+.+++  .|||||++|-.+.+.  +...+. .-   ..++..++.+ +.-+
T Consensus        52 ----~~il~~~-----~~~--~iv~l~~~f~~~~~lylvmEy~~GGdL~~~--l~~~~~l~e~~~~~~~~qi~~a-L~~l  117 (363)
T cd05628          52 ----RDILVEA-----DSL--WVVKMFYSFQDKLNLYLIMEFLPGGDMMTL--LMKKDTLTEEETQFYIAETVLA-IDSI  117 (363)
T ss_pred             ----HHHHHHC-----CCC--CEEEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHH
T ss_conf             ----9999868-----999--776598999989989999955589728998--8726998999999999999999-9999


Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHH
Q ss_conf             74486617878622898028953574340312169899999
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRF  319 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~  319 (517)
                      -..|+.|-|.-|.||+++.+|.+-+.|||++..+....+..
T Consensus       118 H~~gIiHRDLKPeNILld~~g~iKL~DFGla~~l~~~~~~~  158 (363)
T cd05628         118 HQLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTE  158 (363)
T ss_pred             HHCCEEECCCCCCEEEECCCCCEEECCCCCCCCCCCCCCCC
T ss_conf             74878951256661788899988976477652234233320


No 136
>cd05584 STKc_p70S6K STKc_p70S6K: Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p7
Probab=98.70  E-value=1.6e-07  Score=77.36  Aligned_cols=140  Identities=16%  Similarity=0.248  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHEE-CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             6677888865555021-288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  126 PIAAASIAQVHPAVVH-DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       126 PlasASiaQVh~A~l~-d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      .|+.|+-|.||.|+-. +.++|+.+|+||.+..--   ..+                           +.-...+..   
T Consensus         3 ~LG~G~fG~V~la~~~~~~~t~~~~AiKvi~k~~~---~~~---------------------------~~~~~~~~~---   49 (323)
T cd05584           3 VLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATI---VRN---------------------------QKDTAHTKA---   49 (323)
T ss_pred             EECCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHH---CCC---------------------------HHHHHHHHH---
T ss_conf             86228981899999745588895899999807884---406---------------------------788999999---


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHH----HHHHHHHHHHHH
Q ss_conf             5999988987202446776643000010221783--3530024786324267733200225689----999999999989
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERL----SVTLVQSFLLHT  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~l----a~~l~~~~~~qi  278 (517)
                         |.+-++.+.     +|.  |.+.|..+.+++  .+||||++|-.+.+.  +...+.-....    +..++.+ +.-+
T Consensus        50 ---E~~il~~l~-----Hp~--Iv~l~~~f~~~~~lylVmEy~~GGdL~~~--l~~~~~~~e~~~~~~~~qi~~a-L~yl  116 (323)
T cd05584          50 ---ERNILEAVK-----HPF--IVDLIYAFQTGGKLYLILEYLSGGELFMH--LEREGIFMEDTACFYLSEISLA-LEHL  116 (323)
T ss_pred             ---HHHHHHHCC-----CCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHH
T ss_conf             ---999998679-----989--89099999989999999964799979999--9764999999999999999999-9999


Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             744866178786228980289535743403121
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                      -..|+.|-|.-|.||+++.+|.+-+.|||+...
T Consensus       117 H~~gIiHRDlKPeNILl~~~g~iKL~DFGlak~  149 (323)
T cd05584         117 HQQGIIYRDLKPENILLDAQGHVKLTDFGLCKE  149 (323)
T ss_pred             HHCCEEECCCCCCCCCCCCCCCEEECCHHHHHH
T ss_conf             749789573662134657899877410245554


No 137
>cd05601 STKc_CRIK STKc_CRIK: Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnormal cytokinesis and massive apoptosis in neuronal precursors. A Down syndrome
Probab=98.70  E-value=5.3e-08  Score=81.15  Aligned_cols=140  Identities=18%  Similarity=0.319  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.||.|.||+|+-+.  +|+.||||+.+.....                    .       .    +-..      .
T Consensus         7 ~~LG~G~fG~V~~a~~~~--tg~~~AiK~i~k~~~~--------------------~-------~----~~~~------~   47 (330)
T cd05601           7 SVIGRGHFGEVQVVREKA--TGDIYAMKVMKKSVLL--------------------A-------Q----ETVS------F   47 (330)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHCC--------------------C-------H----HHHH------H
T ss_conf             684217582999999889--9989999998268867--------------------9-------8----9999------9


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH-----
Q ss_conf             5999988987202446776643000010221783--353002478632426773320022568999999999998-----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH-----  277 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q-----  277 (517)
                      +..|...+....     +|  .|.+.+..+.+++  .+||||++|-.+.+.  +...+   ..+.+..+..|+.|     
T Consensus        48 ~~~E~~il~~~~-----hp--~Iv~l~~~f~~~~~~yivmEy~~gGdL~~~--l~~~~---~~l~e~~~~~~~~qi~~al  115 (330)
T cd05601          48 FEEERDIMAIAN-----SP--WIPQLQYAFQDKDNLYLVMEYHPGGDLLSL--LNRYE---DQFDESMAQFYLAELVLAI  115 (330)
T ss_pred             HHHHHHHHHHCC-----CC--CCCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCC---CCCCHHHHHHHHHHHHHHH
T ss_conf             999999998679-----99--889499999989999999983799748999--98618---9999999999999999999


Q ss_pred             --HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             --97448661787862289802895357434031216989
Q gi|254780623|r  278 --TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       278 --i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                        +-..|+.|-|.-|.||+++.+|.+-+.|||+...++..
T Consensus       116 ~yLH~~gIiHRDiKPeNILld~~g~iKL~DFGla~~~~~~  155 (330)
T cd05601         116 HSLHQMGYVHRDIKPENILIDRTGHIKLADFGSAAKLNAN  155 (330)
T ss_pred             HHHHHCCEEECCCCCCCEEECCCCCEEEEECCCEEEECCC
T ss_conf             9997486884546500034658998898026554771588


No 138
>cd05039 PTKc_Csk_like Catalytic Domain of C-terminal Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk 
Probab=98.70  E-value=5.4e-08  Score=81.11  Aligned_cols=137  Identities=15%  Similarity=0.167  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             67666778888655550212888723687640310468877778899987532114685433469179999999887888
Q gi|254780623|r  123 FDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME  202 (517)
Q Consensus       123 fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E  202 (517)
                      |.++||.|+-|.||+|+.+    |++||||+.+.+-                               ...+         
T Consensus        10 ~~~~iG~G~fg~Vy~g~~~----g~~VAiK~~~~~~-------------------------------~~~~---------   45 (256)
T cd05039          10 LGATIGKGEFGDVMLGDYR----GQKVAVKCLKDDS-------------------------------TAAQ---------   45 (256)
T ss_pred             EEEEEEECCCEEEEEEEEC----CCEEEEEEECCCC-------------------------------CHHH---------
T ss_conf             8339920898089999999----9199999988886-------------------------------5699---------


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHH-HHCCC---HHHHHHHHHHHHHH
Q ss_conf             655999988987202446776643000010221--7833530024786324267733-20022---56899999999999
Q gi|254780623|r  203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLR-ACGHD---LERLSVTLVQSFLL  276 (517)
Q Consensus       203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~-~~~~d---~~~la~~l~~~~~~  276 (517)
                       +|.+|++.+.+++.     |.|  -+.|.-..  ..-.|||||++|-++.+.-.-. ....+   +..++..++++ +.
T Consensus        46 -~f~~E~~~l~~l~H-----pNI--v~~~g~~~~~~~~~iV~Ey~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~g-l~  116 (256)
T cd05039          46 -AFLAEASVMTTLRH-----PNL--VQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEG-ME  116 (256)
T ss_pred             -HHHHHHHHHHHCCC-----CCE--EEEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHH-HH
T ss_conf             -99999999985899-----888--2088899889999999975899978999975489899999999999999999-99


Q ss_pred             HHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC
Q ss_conf             897448661787862289802895357434031216
Q gi|254780623|r  277 HTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL  312 (517)
Q Consensus       277 qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l  312 (517)
                      -+-..|+.|.|.-|.||+++.+|.+-+-|||+....
T Consensus       117 yLH~~~iiHrDlK~~NiLl~~~~~~Kl~DFGls~~~  152 (256)
T cd05039         117 YLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEA  152 (256)
T ss_pred             HHHHCCCEECCCCCCEEEECCCCCEEEEECCCCEEC
T ss_conf             997589332546751388899994899305467006


No 139
>cd05116 PTKc_Syk Catalytic Domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio
Probab=98.70  E-value=3.4e-07  Score=74.97  Aligned_cols=141  Identities=18%  Similarity=0.220  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             66778888655550212888723687640310468877778899987532114685433469179999999887888655
Q gi|254780623|r  126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL  205 (517)
Q Consensus       126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~  205 (517)
                      -|++|+-|+||+|..++.++++.||||+.+-...                    .+        ...+          .|
T Consensus         2 ~LG~G~fG~V~~g~~~~~~~~~~VAvK~~~~~~~--------------------~~--------~~~~----------~~   43 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNN--------------------DP--------ALKD----------EL   43 (257)
T ss_pred             CCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCC--------------------CH--------HHHH----------HH
T ss_conf             0430888099998999789997999999853569--------------------97--------9999----------99


Q ss_pred             HHHHHHHHHHHCCCCCCCC-CCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHH-CCC---HHHHHHHHHHHHHHHHHH
Q ss_conf             9999889872024467766-43000010221783353002478632426773320-022---568999999999998974
Q gi|254780623|r  206 RLEAAAFSEMAENTVKDQG-FRVPKIDWNRTERDVITMEWIDGVKISDTEKLRAC-GHD---LERLSVTLVQSFLLHTLR  280 (517)
Q Consensus       206 ~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~-~~d---~~~la~~l~~~~~~qi~~  280 (517)
                      .+|++.+.+++.     |. |.+=.+..  +..-++||||+++-++.+.-  ... ...   ...++..++.. +.-+-.
T Consensus        44 ~~E~~~l~~l~H-----pnIv~~~g~~~--~~~~~ivmE~~~~g~L~~~L--~~~~~~~~~~~~~~~~qia~g-l~yLH~  113 (257)
T cd05116          44 LREANVMQQLDN-----PYIVRMIGICE--AESWMLVMELAELGPLNKFL--QKNKHVTEKNITELVHQVSMG-MKYLEE  113 (257)
T ss_pred             HHHHHHHHHCCC-----CCEEEEEEEEE--CCCEEEEEECCCCCCHHHHH--HHCCCCCHHHHHHHHHHHHHH-HHHHHH
T ss_conf             999999986799-----98805889995--89479999858999999998--537999999999999999999-999986


Q ss_pred             CCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             4866178786228980289535743403121698
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      .|+.|.|.-|.||+++.++.+-+-|||+...++.
T Consensus       114 ~~ivHrDLK~~NiLl~~~~~~Kl~DFGls~~~~~  147 (257)
T cd05116         114 TNFVHRDLAARNVLLVTQHYAKISDFGLSKALGA  147 (257)
T ss_pred             CCCCCCCCCHHHEEECCCCCEEEEECCCCEECCC
T ss_conf             8937661676558884899789997476426679


No 140
>cd07860 STKc_CDK2_3 The catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A comp
Probab=98.70  E-value=4.5e-08  Score=81.76  Aligned_cols=137  Identities=20%  Similarity=0.316  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-|+.||-|.||+|+-+  .+|+.||||+.+-....                                +.....+.    
T Consensus         6 ~~iG~G~fg~V~~~~~~--~t~~~vAiK~i~~~~~~--------------------------------~~~~~~~~----   47 (284)
T cd07860           6 EKIGEGTYGVVYKARNK--LTGEVVALKKIRLDTET--------------------------------EGVPSTAI----   47 (284)
T ss_pred             EECCCCCCEEEEEEEEC--CCCCEEEEEEECCCCCC--------------------------------HHHHHHHH----
T ss_conf             78523658499999988--99989999998122133--------------------------------36699999----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH---
Q ss_conf             5999988987202446776643000010221--78335300247863242677332002256899999999999897---
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL---  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~---  279 (517)
                        +|.+.+.++.     .|.|  =+.|.-+-  ..-.+||||++| .+.+.  ++..  ....+.+..+..|++|++   
T Consensus        48 --~Ei~il~~l~-----HpnI--v~l~~~~~~~~~~yiv~E~~~~-~L~~~--~~~~--~~~~~~~~~i~~~~~Qil~al  113 (284)
T cd07860          48 --REISLLKELN-----HPNI--VKLLDVIHTENKLYLVFEFLHQ-DLKKF--MDAS--PLSGIPLPLIKSYLFQLLQGL  113 (284)
T ss_pred             --HHHHHHHHCC-----CCCE--EEEEEEECCCCEEEEEEECCCC-CHHHH--HHHC--CCCCCCHHHHHHHHHHHHHHH
T ss_conf             --9999998679-----9998--1461004449989999964898-78999--8752--568999999999999999999


Q ss_pred             ----HCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             ----4486617878622898028953574340312169
Q gi|254780623|r  280 ----RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       280 ----~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                          ..|+.|.|.-|.||+++.+|.+-+.|||+...+.
T Consensus       114 ~yLH~~~IiHRDiKPeNILl~~~~~iKl~DFGla~~~~  151 (284)
T cd07860         114 AFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFG  151 (284)
T ss_pred             HHHHHCCCEEEECCHHHEEECCCCCEEEEECCCCCCCC
T ss_conf             99987893673267566468899989994357522468


No 141
>cd05034 PTKc_Src_like Catalytic Domain of Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t
Probab=98.70  E-value=3.2e-08  Score=82.87  Aligned_cols=142  Identities=17%  Similarity=0.201  Sum_probs=91.3

Q ss_pred             HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             9867--66677888865555021288872368764031046887777889998753211468543346917999999988
Q gi|254780623|r  121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV  198 (517)
Q Consensus       121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  198 (517)
                      ++|+  +.|++||-|+||+|+.+.   +.+||||+.+++-.                           +.    +     
T Consensus         6 ~~~~l~~~iG~G~fG~Vy~~~~~~---~~~VAvK~l~~~~~---------------------------~~----~-----   46 (261)
T cd05034           6 ESLKLERKLGAGQFGEVWMGTWNG---TTKVAVKTLKPGTM---------------------------SP----E-----   46 (261)
T ss_pred             HHEEEEEEEECCCCCEEEEEEECC---CCEEEEEEECCCCC---------------------------CH----H-----
T ss_conf             995982598428883899999999---99999999874789---------------------------99----9-----


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHH-HCCCHH---HHHHHHHH
Q ss_conf             788865599998898720244677664300001022--178335300247863242677332-002256---89999999
Q gi|254780623|r  199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRA-CGHDLE---RLSVTLVQ  272 (517)
Q Consensus       199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~-~~~d~~---~la~~l~~  272 (517)
                           +|.+|++.+.+++.     |.|  =+.|.-.  ...-.|||||++|-.+.+.-.-.. ......   .++..++.
T Consensus        47 -----~f~~E~~~l~~l~H-----pnI--V~~~g~~~~~~~~~iv~Ey~~~G~L~~~l~~~~~~~l~~~~~~~i~~qia~  114 (261)
T cd05034          47 -----AFLEEAQIMKKLRH-----DKL--VQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAE  114 (261)
T ss_pred             -----HHHHHHHHHHHCCC-----CCE--EEEEEEEEECCEEEEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf             -----99999999986899-----798--559999988998999997589988899972188888999999999999999


Q ss_pred             HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             999989744866178786228980289535743403121698
Q gi|254780623|r  273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      + +.-+-..|+.|.|.-|.||+++.++.+-+-|||+...+..
T Consensus       115 g-l~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFGls~~~~~  155 (261)
T cd05034         115 G-MAYLESRNYIHRDLAARNVLVGENLVCKVADFGLARLIED  155 (261)
T ss_pred             H-HHHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCEECCC
T ss_conf             9-9999869957543272758988999799972787557578


No 142
>cd05631 STKc_GRK4 STKc_GRK4: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as 
Probab=98.70  E-value=2e-08  Score=84.47  Aligned_cols=144  Identities=18%  Similarity=0.254  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|++||-|+||+|+-+.  +|+.||+|+....--                 ..              .+      .+.-
T Consensus         6 k~lG~G~fg~V~~~~~~~--tg~~~AiK~i~~~~~-----------------~~--------------~~------~~~~   46 (285)
T cd05631           6 RVLGKGGFGEVCACQVRA--TGKMYACKKLEKKRI-----------------KK--------------RK------GEAM   46 (285)
T ss_pred             EEECCCCCEEEEEEEECC--CCCEEEEEEECHHHH-----------------CC--------------HH------HHHH
T ss_conf             895038182999999989--997999999837881-----------------02--------------57------8999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHH-HHHHHCCCHHH---HHHHHHHHHHHHH
Q ss_conf             5999988987202446776643000010221783--3530024786324267-73320022568---9999999999989
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTE-KLRACGHDLER---LSVTLVQSFLLHT  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~-~l~~~~~d~~~---la~~l~~~~~~qi  278 (517)
                      ..+|.+.+.++..     +  .|.+.+..+.+++  .+||||++|-.+.+.- .....+.+-..   .+..++.+ +.-+
T Consensus        47 ~~~E~~il~~~~h-----~--~iv~l~~~~~~~~~~~lv~e~~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~a-l~yl  118 (285)
T cd05631          47 ALNEKRILEKVNS-----R--FVVSLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCG-LEDL  118 (285)
T ss_pred             HHHHHHHHHHCCC-----C--CCCEEEEEEEECCEEEEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHH-HHHH
T ss_conf             9999999987699-----8--888599999979999999996579858999986389999999999999999999-9999


Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             7448661787862289802895357434031216989
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      -..|+.|-|.-|.||+++.+|.+-+.|||+...+++.
T Consensus       119 H~~~IiHRDlKPeNILl~~~~~iKl~DFGla~~~~~~  155 (285)
T cd05631         119 QRERIVYRDLKPENILLDDRGHIRISDLGLAVQIPEG  155 (285)
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCEEEEECCCEEECCCC
T ss_conf             9779757766865656578996899765845887899


No 143
>cd07876 STKc_JNK2 The catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes
Probab=98.69  E-value=3.4e-08  Score=82.70  Aligned_cols=151  Identities=19%  Similarity=0.219  Sum_probs=84.7

Q ss_pred             HHHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf             999867--666778888655550212888723687640310468877778899987532114685433469179999999
Q gi|254780623|r  119 LYCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALE  196 (517)
Q Consensus       119 ~F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~  196 (517)
                      +...|+  +.|+.||-|.||+|+=+.  +|+.||||+.+....+                                +...
T Consensus        19 vl~rY~i~~~IG~G~fG~V~~a~d~~--tg~~VAIK~i~~~~~~--------------------------------~~~~   64 (359)
T cd07876          19 VLKRYQQLKPIGSGAQGIVCAAFDTV--LGINVAVKKLSRPFQN--------------------------------QTHA   64 (359)
T ss_pred             HHHCEEEEEEEECCCCEEEEEEEECC--CCCEEEEEEECCHHCC--------------------------------HHHH
T ss_conf             13363881597215086999999889--9989999998910149--------------------------------7999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHH---HHHHHHHH
Q ss_conf             887888655999988987202-44677664300001022178335300247863242677332002256---89999999
Q gi|254780623|r  197 QVTKMEMDLRLEAAAFSEMAE-NTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLE---RLSVTLVQ  272 (517)
Q Consensus       197 ~~l~~ElD~~~Ea~n~~~~~~-~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~l~~  272 (517)
                      ..+.      +|...+..+.. |.-..-++..|.-..+.-..-.+||||++|. +.+.-   ....+..   .++..++.
T Consensus        65 ~~~~------rEi~il~~l~HpnIv~l~~~f~~~~~~~~~~~~ylvmE~~~~~-L~~~i---~~~l~~~~~~~i~~qil~  134 (359)
T cd07876          65 KRAY------RELVLLKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMDAN-LCQVI---HMELDHERMSYLLYQMLC  134 (359)
T ss_pred             HHHH------HHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCC-HHHHH---HCCCCHHHHHHHHHHHHH
T ss_conf             9999------9999998679969882899994167421266079999607998-89998---526999999999999999


Q ss_pred             HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             999989744866178786228980289535743403121698
Q gi|254780623|r  273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      + ++-+-..|+.|-|.-|.||+++.+|.+-+.|||+....+.
T Consensus       135 g-L~ylH~~gIiHRDIKP~NILl~~~g~iKL~DFGlAr~~~~  175 (359)
T cd07876         135 G-IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTACT  175 (359)
T ss_pred             H-HHHHHHCCEEECCCCHHHEEECCCCCEEECCCCCCCCCCC
T ss_conf             9-9999868923057866876987899776235340301367


No 144
>cd05598 STKc_LATS STKc_LATS: Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.
Probab=98.69  E-value=3e-08  Score=83.11  Aligned_cols=142  Identities=23%  Similarity=0.339  Sum_probs=86.1

Q ss_pred             HHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             867--666778888655550212888723687640310468877778899987532114685433469179999999887
Q gi|254780623|r  122 EFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT  199 (517)
Q Consensus       122 ~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  199 (517)
                      .|+  +.|++|+-|.||+|+-++  +|+.||+|+.+..       +         +..+               +-...+
T Consensus         2 ~fe~ik~iG~G~fG~V~la~~~~--t~~~~AiK~i~k~-------~---------~~~~---------------~~~~~~   48 (376)
T cd05598           2 MFVKIKTIGIGAFGEVCLVRKVD--TNALYAMKTLRKA-------D---------VLMR---------------NQAAHV   48 (376)
T ss_pred             CCEEEEEEECCCCEEEEEEEECC--CCCEEEEEEECHH-------H---------CCCH---------------HHHHHH
T ss_conf             67698798238881999999899--9989999998268-------8---------0276---------------799999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHH----HHHHHH
Q ss_conf             888655999988987202446776643000010221783--35300247863242677332002256899----999999
Q gi|254780623|r  200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLS----VTLVQS  273 (517)
Q Consensus       200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la----~~l~~~  273 (517)
                      ..|.      .-+...     +.|.  |.+.|..+.++.  .|||||++|-.+.+.  +...+.-....+    ..++.+
T Consensus        49 ~~E~------~il~~~-----~hp~--Iv~l~~~f~~~~~lylvmEy~~gGdL~~~--l~~~~~~~e~~a~~~~~qi~~a  113 (376)
T cd05598          49 KAER------DILAEA-----DNEW--VVKLYYSFQDKDNLYFVMDYIPGGDMMSL--LIRLGIFEEDLARFYIAELTCA  113 (376)
T ss_pred             HHHH------HHHHHC-----CCCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH
T ss_conf             9999------999868-----9998--89499999989999999964799708999--9873999999999999999999


Q ss_pred             HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC
Q ss_conf             999897448661787862289802895357434031216
Q gi|254780623|r  274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL  312 (517)
Q Consensus       274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l  312 (517)
                       +.-+-..|+.|-|.-|.||+++.+|.+-+.|||++..+
T Consensus       114 -L~ylH~~giiHRDlKPeNILl~~~g~iKL~DFGla~~~  151 (376)
T cd05598         114 -IESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGF  151 (376)
T ss_pred             -HHHHHHCCEEECCCCHHEEEECCCCCEEEEECCCCCCC
T ss_conf             -99997376776555500168889998899725886444


No 145
>cd05629 STKc_NDR_like_fungal STKc_NDR_like_fungal: Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of Ace2p activity and cellular morphogenesis) network. CBK1 and Orb6 play s
Probab=98.69  E-value=6e-08  Score=80.79  Aligned_cols=137  Identities=18%  Similarity=0.288  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.|+-|.||+|+-++  +|+.||||+.+..-                +          .. ..    -...+     
T Consensus         7 k~lG~G~fG~V~~a~~~~--tg~~~AiK~i~k~~----------------~----------~~-~~----~~~~~-----   48 (377)
T cd05629           7 KVIGKGAFGEVRLVQKKD--TGKIYAMKTLLKSE----------------M----------FK-KD----QLAHV-----   48 (377)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHH----------------C----------CC-HH----HHHHH-----
T ss_conf             782228583999999889--99899999984688----------------0----------58-89----99999-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH-----
Q ss_conf             5999988987202446776643000010221783--353002478632426773320022568999999999998-----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH-----  277 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q-----  277 (517)
                       ..|..-+...     +.|.  |.+.|..+.+.+  .|||||++|-.+.+.  +...+.    +.+..+..|+.|     
T Consensus        49 -~~E~~il~~~-----~hp~--Iv~l~~~f~~~~~~ylvmEy~~ggdL~~~--l~~~~~----~~e~~~~~~~~qi~~al  114 (377)
T cd05629          49 -KAERDVLAES-----DSPW--VVSLYYSFQDAQYLYLIMEFLPGGDLMTM--LIKYDT----FSEDVTRFYMAECVLAI  114 (377)
T ss_pred             -HHHHHHHHHC-----CCCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCC----CCHHHHHHHHHHHHHHH
T ss_conf             -9999999868-----9998--79499999989999999958999748899--986499----99999999999999999


Q ss_pred             --HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             --974486617878622898028953574340312169
Q gi|254780623|r  278 --TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       278 --i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                        +-..|+.|-|.-|.||+++.+|.+-+.|||+...+.
T Consensus       115 ~~lH~~giiHRDlKPeNILl~~~g~iKL~DFGls~~~~  152 (377)
T cd05629         115 EAVHKLGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFH  152 (377)
T ss_pred             HHHHHCEEEECCCCCCEEEECCCCCEEECCCCCCCCCC
T ss_conf             99874728964576555898799988981266763433


No 146
>cd07848 STKc_CDKL5 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5 subfamily. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations a
Probab=98.69  E-value=3.7e-08  Score=82.43  Aligned_cols=144  Identities=15%  Similarity=0.241  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-|+.||-|+||+|+-+.  +|+.||||+.+..-.                                -++....+.+|+ 
T Consensus         7 ~~iG~G~fg~V~~~~~~~--t~~~vAiK~i~~~~~--------------------------------~~~~~~~~~rEi-   51 (287)
T cd07848           7 GVVGEGAYGVVLKCRHKE--TKEIVAIKKFKDSEE--------------------------------NEEVKETTLREL-   51 (287)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCC--------------------------------CHHHHHHHHHHH-
T ss_conf             796417486999999889--998999999874005--------------------------------979999999999-


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHC
Q ss_conf             599998898720244677664300001022178335300247863242677332002256---89999999999989744
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLE---RLSVTLVQSFLLHTLRD  281 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~l~~~~~~qi~~~  281 (517)
                           +-+..+..    ..-|..=.+|. ..+.-.|||||++|-.+..+.... .+....   .+...++.+ +.-+-..
T Consensus        52 -----~il~~l~h----~nIv~l~~~f~-~~~~~~lVmE~~~~~ll~~~~~~~-~~~~~~~i~~~~~qil~a-l~ylH~~  119 (287)
T cd07848          52 -----KMLRTLKQ----ENIVELKEAFR-RRGKLYLVFEYVEKNMLELLEEMP-NGVPPEKVRSYIYQLIKA-IHWCHKN  119 (287)
T ss_pred             -----HHHHHCCC----CCCCEEEEEEE-ECCEEEEEEECCCCCHHHHHHHCC-CCCCHHHHHHHHHHHHHH-HHHHHHC
T ss_conf             -----99986799----89873989999-899999999758998199998644-899999999999999999-9999988


Q ss_pred             CEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             8661787862289802895357434031216989
Q gi|254780623|r  282 GFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       282 GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      |+.|-|.-|.||+++.+|.+-+.|||+...+++.
T Consensus       120 ~IiHRDiKPeNILl~~~~~iKl~DFG~a~~~~~~  153 (287)
T cd07848         120 DIVHRDIKPENLLISHNDVLKLCDFGFARNLSEG  153 (287)
T ss_pred             CCCCCCCCHHHEEECCCCCEEEECCCCCEECCCC
T ss_conf             9240567789978888998898137644464677


No 147
>cd05632 STKc_GRK5 STKc_GRK5: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids
Probab=98.69  E-value=8.1e-08  Score=79.74  Aligned_cols=145  Identities=19%  Similarity=0.280  Sum_probs=88.0

Q ss_pred             HH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             67--6667788886555502128887236876403104688777788999875321146854334691799999998878
Q gi|254780623|r  123 FD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTK  200 (517)
Q Consensus       123 fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~  200 (517)
                      |+  +.|++|+-|+||+|+-+.  +|+.||||+....-                . ..              .+....  
T Consensus         2 f~~~k~LG~G~fg~V~~~~~~~--tg~~~AiK~i~k~~----------------~-~~--------------~~~~~~--   46 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRA--TGKMYACKKLEKKR----------------I-KK--------------RKGESM--   46 (285)
T ss_pred             CEEEEEEECCCCEEEEEEEECC--CCCEEEEEEEEHHH----------------H-CC--------------HHHHHH--
T ss_conf             5662896028290999999999--99799999981788----------------0-13--------------577999--


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHH-HHHHHCCCHHH---HHHHHHHHH
Q ss_conf             88655999988987202446776643000010221783--3530024786324267-73320022568---999999999
Q gi|254780623|r  201 MEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTE-KLRACGHDLER---LSVTLVQSF  274 (517)
Q Consensus       201 ~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~-~l~~~~~d~~~---la~~l~~~~  274 (517)
                          ..+|.+.++++..     +.  |.+.|..+.+++  .+||||++|-.+.+.- .....+.+-..   ++..++.+ 
T Consensus        47 ----~~~E~~il~~l~h-----~~--iv~l~~~~~~~~~~~lv~E~~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~a-  114 (285)
T cd05632          47 ----ALNEKQILEKVNS-----RF--VVSLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFEEERVLFYAAEICCG-  114 (285)
T ss_pred             ----HHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHH-
T ss_conf             ----9999999987699-----88--88498999979989999996379848999996289999999999999999999-


Q ss_pred             HHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             9989744866178786228980289535743403121698
Q gi|254780623|r  275 LLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       275 ~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      +.-+-..|+.|-|.-|.||+++.+|.+-+.|||+...+++
T Consensus       115 L~ylH~~~IiHRDlKPeNILl~~~g~iKl~DFGla~~~~~  154 (285)
T cd05632         115 LEDLHRENIVYRDLKPENILLDDYGHIRISDLGLAIKIPE  154 (285)
T ss_pred             HHHHHHCCCCCCCCCHHHHCCCCCCEEEEEECCCEEECCC
T ss_conf             9999888875167886660534798189965574278479


No 148
>cd06610 STKc_OSR1_SPAK Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WN
Probab=98.68  E-value=3.4e-08  Score=82.64  Aligned_cols=139  Identities=24%  Similarity=0.288  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|++|+-|.||+|+-+.  +|+.||||+....                    . .+        +-+        +  .
T Consensus         7 ~~iG~G~fg~Vy~a~~~~--~~~~vAiK~i~~~--------------------~-~~--------~~~--------~--~   45 (266)
T cd06610           7 EVIGSGATAVVQRAICLP--NGEKVAIKRIDLE--------------------K-CQ--------TSM--------D--E   45 (266)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEEHH--------------------H-CH--------HHH--------H--H
T ss_conf             697227484999999989--9989999998779--------------------8-94--------899--------9--9


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH----
Q ss_conf             599998898720244677664300001022178--33530024786324267733200225689999999999989----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT----  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi----  278 (517)
                      +.+|++.+.+++.     |.  |-+.|..+.++  -.+||||++|-.+.+.-.....   ...+-+..+..++.|+    
T Consensus        46 ~~~E~~~l~~l~H-----pn--Iv~~~~~~~~~~~~~ivmE~~~~g~L~~~~~~~~~---~~~~~e~~~~~~~~qi~~al  115 (266)
T cd06610          46 LRKEIQAMSLCHH-----PN--VVKYYTSFVVGDELWVVMPLMSGGSCLDIMKYSYP---QGGLDEAIIATILKEVLKGL  115 (266)
T ss_pred             HHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHHHHHHCC---CCCCCHHHHHHHHHHHHHHH
T ss_conf             9999999986799-----89--89199999989999999967689979999986264---79999999999999999999


Q ss_pred             ---HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             ---744866178786228980289535743403121698
Q gi|254780623|r  279 ---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       279 ---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                         -..|+.|-|.-|.||+++.+|.+-+.|||+...+..
T Consensus       116 ~ylH~~~iiHRDiKP~NILl~~~~~vKl~DFGla~~l~~  154 (266)
T cd06610         116 EYLHKNGQIHRDIKAGNILLDSDGSVKLADFGVSASLAD  154 (266)
T ss_pred             HHHHHCCCCCCCCCHHHEEECCCCCEEEECCCCCEECCC
T ss_conf             999978932266666667997999999966876346357


No 149
>cd05052 PTKc_Abl Catalytic Domain of the Protein Tyrosine Kinase, Abelson kinase. Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays
Probab=98.68  E-value=7.5e-08  Score=80.02  Aligned_cols=143  Identities=16%  Similarity=0.181  Sum_probs=92.5

Q ss_pred             HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99867--6667788886555502128887236876403104688777788999875321146854334691799999998
Q gi|254780623|r  120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ  197 (517)
Q Consensus       120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~  197 (517)
                      +++|+  +.|+.|+-|+||+|+.+.  +|+.||||+.+.+-                           .+    .+    
T Consensus         5 ~~d~~~~~~iG~G~fG~Vyk~~~~~--~~~~VAvK~~~~~~---------------------------~~----~~----   47 (263)
T cd05052           5 RTDITMKHKLGGGQYGEVYEGVWKK--YSLTVAVKTLKEDT---------------------------ME----VE----   47 (263)
T ss_pred             HHHEEEEEEEEECCCCEEEEEEECC--CCEEEEEEEECCCC---------------------------CC----HH----
T ss_conf             7993874598407882999999889--99499999988875---------------------------61----99----


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHH-HHHCCCH---HHHHHHHH
Q ss_conf             87888655999988987202446776643000010221--783353002478632426773-3200225---68999999
Q gi|254780623|r  198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKL-RACGHDL---ERLSVTLV  271 (517)
Q Consensus       198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l-~~~~~d~---~~la~~l~  271 (517)
                            +|.+|++.+.+++.     |.|  -+.|.-+.  ..-.|||||++|-++.+.-.- .....+.   ..+|..++
T Consensus        48 ------~~~~Ei~il~~l~H-----pnI--v~~~g~~~~~~~~~iv~Ey~~~G~L~~~l~~~~~~~~~~~~~~~ia~qia  114 (263)
T cd05052          48 ------EFLKEAAVMKEIKH-----PNL--VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQIS  114 (263)
T ss_pred             ------HHHHHHHHHHHCCC-----CCC--CCEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             ------99999999985799-----999--85889994699899999827999089999756988899999999999999


Q ss_pred             HHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             999998974486617878622898028953574340312169
Q gi|254780623|r  272 QSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       272 ~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                      .+ +.-+-..|+.|.|.-|.||+++.++.+-+-|||+...++
T Consensus       115 ~g-l~yLH~~~iiHrDLK~~NiLl~~~~~vKl~DFGls~~~~  155 (263)
T cd05052         115 SA-MEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMT  155 (263)
T ss_pred             HH-HHHHHHCCCCCCCCCCCCEEECCCCCEEEEECCCCEECC
T ss_conf             99-999965895357566020567799949998667655657


No 150
>cd05605 STKc_GRK4_like STKc_GRK4_like: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (
Probab=98.68  E-value=1.5e-07  Score=77.70  Aligned_cols=144  Identities=15%  Similarity=0.204  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-|+.||-|+||+|+-+.  +|+.||+|+....-   +.             +.               +....      
T Consensus         6 ~~lG~G~fg~V~~~~~~~--t~~~~AiK~i~k~~---~~-------------~~---------------~~~~~------   46 (285)
T cd05605           6 RVLGKGGFGEVCACQVRA--TGKMYACKKLEKKR---IK-------------KR---------------KGEAM------   46 (285)
T ss_pred             EEECCCCCEEEEEEEECC--CCCEEEEEEEEHHH---HC-------------CH---------------HHHHH------
T ss_conf             996138082999999999--99899999983788---20-------------05---------------78999------


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHH-HHHHHHCCCHH---HHHHHHHHHHHHHH
Q ss_conf             599998898720244677664300001022178--3353002478632426-77332002256---89999999999989
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDT-EKLRACGHDLE---RLSVTLVQSFLLHT  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~-~~l~~~~~d~~---~la~~l~~~~~~qi  278 (517)
                      ..+|.+.++++..     +.  |.+.|..+.++  -.+||||++|-.+... ......+.+-.   .++..++.+ +.-+
T Consensus        47 ~~~E~~il~~l~h-----p~--Iv~l~~~~~~~~~~~lvmE~~~gGdL~~~i~~~~~~~l~e~~~~~~~~qil~a-l~yl  118 (285)
T cd05605          47 ALNEKQILEKINS-----PF--VVSLAYAYETKDALCLVLTLMNGGDLKFHIYNMGNPGFEEERAVFYAAEITCG-LEHL  118 (285)
T ss_pred             HHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHH
T ss_conf             9999999987799-----98--99398999979989999996479848999997278999999999999999999-9999


Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             7448661787862289802895357434031216989
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      -..|+.|-|.-|.||+++.+|.+-+.|||+...++..
T Consensus       119 H~~~IiHRDlKPeNiLl~~~g~vKl~DFGla~~~~~~  155 (285)
T cd05605         119 HRERIVYRDLKPENILLDDYGHVRISDLGLAVEIPEG  155 (285)
T ss_pred             HHCCEEECCCCCCCCCCCCCCCEEEEECCCEEECCCC
T ss_conf             8789265525732101226894898145712786799


No 151
>cd05586 STKc_Sck1_like STKc_Sck1_like: Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes.
Probab=98.68  E-value=1.1e-07  Score=78.62  Aligned_cols=135  Identities=17%  Similarity=0.212  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67788886555502128887236876403104688777788999875321146854334691799999998878886559
Q gi|254780623|r  127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR  206 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~  206 (517)
                      |+.||-|.||+|+-++  +|+.||+|+.+..-                +.          +-    ++.. ..      .
T Consensus         1 IG~G~fG~V~~a~~~~--tg~~~AiK~i~k~~----------------~~----------~~----~~~~-~~------~   41 (330)
T cd05586           1 IGKGTFGQVYQVRKKD--TRRIYAMKVLSKKE----------------IV----------AK----KEVA-HT------I   41 (330)
T ss_pred             CCCCCCEEEEEEEECC--CCCEEEEEEEEHHH----------------HH----------CH----HHHH-HH------H
T ss_conf             9668264999999889--99899999984788----------------00----------65----8899-99------9


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH-------
Q ss_conf             9998898720244677664300001022178--3353002478632426773320022568999999999998-------
Q gi|254780623|r  207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH-------  277 (517)
Q Consensus       207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q-------  277 (517)
                      .|.+-+.+.  ...+.|.|  -+.+..+.++  -.+||||++|-.+.+.  +...+.    +.+.-+..|+.|       
T Consensus        42 ~E~~il~~~--~~~~~p~I--v~l~~~f~~~~~lylVmEy~~gGdL~~~--l~~~~~----l~e~~~~~~~~qi~~aL~y  111 (330)
T cd05586          42 GERNILVRT--LLDESPFI--VGLKFSFQTDSDLYLVTDYMSGGELFWH--LQKEGR----FSEDRAKFYIAELVLALEH  111 (330)
T ss_pred             HHHHHHHHH--HHCCCCCE--EEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCC----CCHHHHHHHHHHHHHHHHH
T ss_conf             999999998--51599838--5899999989999999957899888999--987599----9999999999999999999


Q ss_pred             HHHCCEECCCCCCCEEEEECCCCEEEEECCHHE
Q ss_conf             974486617878622898028953574340312
Q gi|254780623|r  278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITG  310 (517)
Q Consensus       278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg  310 (517)
                      +-..|+.|-|.-|.||+++.+|.+.+.|||+..
T Consensus       112 LH~~gIiHRDLKPeNILl~~~g~iKL~DFGlak  144 (330)
T cd05586         112 LHKYDIVYRDLKPENILLDATGHIALCDFGLSK  144 (330)
T ss_pred             HHHCCCEECCCCCCCCCCCCCCCEEECCCCCCC
T ss_conf             998893340327654111578974322334001


No 152
>cd06646 STKc_MAP4K5 Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MA
Probab=98.68  E-value=4.8e-08  Score=81.52  Aligned_cols=141  Identities=18%  Similarity=0.190  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.||+||-|+||+|.-..  +|+.||||+.+..-                      .           +++. .      
T Consensus        15 ~~iG~G~fg~Vy~a~~~~--~~~~vAiK~i~~~~----------------------~-----------~~~~-~------   52 (267)
T cd06646          15 QRVGSGTYGDVYKARNLH--TGELAAVKIIKLEP----------------------G-----------DDFS-L------   52 (267)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEECCC----------------------C-----------CHHH-H------
T ss_conf             898227684999999889--99799999981575----------------------1-----------4389-9------


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHC-CCHH---HHHHHHHHHHHHHHHH
Q ss_conf             59999889872024467766430000102217833530024786324267733200-2256---8999999999998974
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACG-HDLE---RLSVTLVQSFLLHTLR  280 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~-~d~~---~la~~l~~~~~~qi~~  280 (517)
                      +.+|...+.+++.    ..-|.+-.+|.+ ...-.+||||++|-.+.+.-  ...+ .+-.   .++..++.+ +.-+-.
T Consensus        53 ~~~Ei~il~~l~H----pnIv~~~~~~~~-~~~~~lvmEy~~~g~L~~~l--~~~~~~~e~~i~~i~~qil~a-l~ylH~  124 (267)
T cd06646          53 IQQEIFMVKECKH----CNIVAYFGSYLS-REKLWICMEYCGGGSLQDIY--HVTGPLSELQIAYVCRETLQG-LAYLHS  124 (267)
T ss_pred             HHHHHHHHHHCCC----CCEEEEEEEEEE-CCEEEEEEEECCCCCHHHHH--HHCCCCCHHHHHHHHHHHHHH-HHHHHH
T ss_conf             9999999986899----998289899988-99889999814899699999--863999999999999999999-999998


Q ss_pred             CCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             48661787862289802895357434031216989
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      .|+.|-|.-|.||+++.+|.+-+.|||+...++..
T Consensus       125 ~~ivHRDlKp~NILl~~~~~vKl~DFGla~~~~~~  159 (267)
T cd06646         125 KGKMHRDIKGANILLTDNGDVKLADFGVAAKITAT  159 (267)
T ss_pred             CCCEEECCCCHHEEECCCCCEEEECCCCCEECCCC
T ss_conf             79874016703179979999999448686463687


No 153
>cd05110 PTKc_HER4 Catalytic Domain of the Protein Tyrosine Kinase, HER4. Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin
Probab=98.68  E-value=1.7e-07  Score=77.18  Aligned_cols=145  Identities=14%  Similarity=0.148  Sum_probs=87.4

Q ss_pred             HHH--HHHHHHHHHHHHHHHEECCCCCCE----EEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf             867--666778888655550212888723----68764031046887777889998753211468543346917999999
Q gi|254780623|r  122 EFD--DPIAAASIAQVHPAVVHDINGYRK----VAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL  195 (517)
Q Consensus       122 ~fd--ePlasASiaQVh~A~l~d~~~g~~----VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~  195 (517)
                      +|+  +.|++|+-|.||+|+...  .|+.    ||||+.++....                                   
T Consensus         8 dl~~~k~LG~G~FG~Vy~a~~~~--~g~~~~~~vAvK~l~~~~~~-----------------------------------   50 (303)
T cd05110           8 ELKRVKVLGSGAFGTVYKGIWVP--EGETVKIPVAIKILNETTGP-----------------------------------   50 (303)
T ss_pred             HCEEEEEEEECCCCEEEEEEEEC--CCCEEEEEEEEEEECCCCCH-----------------------------------
T ss_conf             99882598207894999589908--99888789999997744487-----------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCH-HCCCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHH
Q ss_conf             98878886559999889872024467766430000102-21783353002478632426773320022568---999999
Q gi|254780623|r  196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWN-RTERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLV  271 (517)
Q Consensus       196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~-~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~  271 (517)
                          ..+.+|.+|+..+..++.     |.|  -+.|.- .+..-.+||||++|-.+.+.-.-.........   ++..++
T Consensus        51 ----~~~~~f~~E~~il~~l~H-----pnI--V~l~g~~~~~~~~lV~E~~~~G~L~~~l~~~~~~l~~~~~~~~~~qia  119 (303)
T cd05110          51 ----KANVEFMDEALIMASMDH-----PHL--VRLLGVCLSPTIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIA  119 (303)
T ss_pred             ----HHHHHHHHHHHHHHHCCC-----CCC--CCEEEEEEECCEEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             ----899999999999986899-----898--919899985885999997689878887775168889999999999999


Q ss_pred             HHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             99999897448661787862289802895357434031216989
Q gi|254780623|r  272 QSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       272 ~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      .+ +.-+-..|+.|.|.-|+||+++.+|.+-+.|||+...+...
T Consensus       120 ~g-l~yLH~~~IiHRDLKp~NILl~~~~~vKI~DFGlar~~~~~  162 (303)
T cd05110         120 KG-MMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGD  162 (303)
T ss_pred             HH-HHHHHHCCCCCCCCCCCCEEECCCCCEEECCCCCCEECCCC
T ss_conf             99-99996689534665310479889998898126452555799


No 154
>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.68  E-value=8.7e-08  Score=79.51  Aligned_cols=97  Identities=25%  Similarity=0.358  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEE
Q ss_conf             59999889872024467766430000102217833530024786324267733200225689999999999989744866
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFF  284 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfF  284 (517)
                      -.+||+.+.+.++.     .|.+|.||.=......||||||+|..+.|.-...     +..+++.+-.. .--+-..|+.
T Consensus        46 t~~Earil~~a~~~-----GV~~P~v~dvD~~~~~I~me~I~G~~lkd~l~~~-----~~~~~r~vG~~-vg~lH~~giv  114 (204)
T COG3642          46 TRREARILAKAREA-----GVPVPIVYDVDPDNGLIVMEYIEGELLKDALEEA-----RPDLLREVGRL-VGKLHKAGIV  114 (204)
T ss_pred             HHHHHHHHHHHHHC-----CCCCCEEEEECCCCCEEEEEEECCHHHHHHHHHC-----CHHHHHHHHHH-HHHHHHCCEE
T ss_conf             89999999999976-----9998769997399877999985881689998721-----66899999999-9988756800


Q ss_pred             CCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             178786228980289535743403121698
Q gi|254780623|r  285 HADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       285 HaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      |+||-+-||++. +++++|||||+-. .++
T Consensus       115 HGDLTtsNiIl~-~~~i~~IDfGLg~-~s~  142 (204)
T COG3642         115 HGDLTTSNIILS-GGRIYFIDFGLGE-FSD  142 (204)
T ss_pred             CCCCCCCEEEEE-CCCEEEEECCCCC-CCC
T ss_conf             578861328983-8968999778432-456


No 155
>cd06630 STKc_MEKK1 Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regul
Probab=98.68  E-value=8.3e-08  Score=79.68  Aligned_cols=141  Identities=18%  Similarity=0.232  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-|+.||-|.||+|.-.  .+|+.||||+.+..-.                     ..   .+-.+.+          -+
T Consensus         6 ~~iG~G~fg~Vy~~~~~--~~g~~~AiK~i~~~~~---------------------~~---~~~~~~~----------~~   49 (268)
T cd06630           6 QQLGTGAFSSCYQARDV--KTGTLMAVKQVTYVRN---------------------TS---SEQEEVV----------EA   49 (268)
T ss_pred             CEEECCCCCEEEEEEEC--CCCCEEEEEEECHHHC---------------------CH---HHHHHHH----------HH
T ss_conf             38512748499999988--9998999999813216---------------------43---5549999----------99


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH----
Q ss_conf             599998898720244677664300001022--17833530024786324267733200225689999999999989----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT----  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi----  278 (517)
                      +.+|.+.+.++.     .|.|.  +.|..+  ...-.+||||++|-.+.+.-  +..+.    +-+..+..|++|+    
T Consensus        50 ~~~Ei~il~~l~-----HpnIv--~~~~~~~~~~~~~ivmEy~~gg~L~~~l--~~~~~----~~e~~~~~~~~qi~~gl  116 (268)
T cd06630          50 LRKEIRLMARLN-----HPHII--RMLGATCEDSHFNLFVEWMAGGSVSHLL--SKYGA----FKEAVIINYTEQLLRGL  116 (268)
T ss_pred             HHHHHHHHHHCC-----CCCEE--EEEEEEEECCEEEEEEECCCCCCHHHHH--HHCCC----CCHHHHHHHHHHHHHHH
T ss_conf             999999998689-----99994--1247999899999999934989799999--87499----99999999999999999


Q ss_pred             ---HHCCEECCCCCCCEEEEECCCC-EEEEECCHHEECCH
Q ss_conf             ---7448661787862289802895-35743403121698
Q gi|254780623|r  279 ---LRDGFFHADLHPGNLFVDSKGY-IVAVDMGITGRLSK  314 (517)
Q Consensus       279 ---~~~GfFHaDPHpGNi~v~~dg~-i~~lDfG~vg~l~~  314 (517)
                         -..|+.|-|.-|.||+++.+|. +-+.|||....+..
T Consensus       117 ~ylH~~~IiHRDiKp~NiLl~~~g~~vKl~DFG~a~~~~~  156 (268)
T cd06630         117 SYLHENQIIHRDVKGANLLIDSTGQRLRIADFGAAARLAA  156 (268)
T ss_pred             HHHHHCCCEECCCCCCEEEEECCCCEEEEEECCCCCCCCC
T ss_conf             9999789263346654499938999799987898703466


No 156
>cd05098 PTKc_FGFR1 Catalytic Domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=98.68  E-value=2.3e-07  Score=76.20  Aligned_cols=161  Identities=14%  Similarity=0.164  Sum_probs=96.8

Q ss_pred             HHHHC--CCCHHHHHHHHH--HHHHHHHHHHHHHHHEECCC-----CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             75404--788999999867--66677888865555021288-----8723687640310468877778899987532114
Q gi|254780623|r  108 VASAL--KAPIEELYCEFD--DPIAAASIAQVHPAVVHDIN-----GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEK  178 (517)
Q Consensus       108 ie~el--g~~~~~~F~~fd--ePlasASiaQVh~A~l~d~~-----~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~  178 (517)
                      .|-||  ...|+--++.+.  +.|+.||-|+||+|+....+     ...+||||+.+++..+   .              
T Consensus         3 ~~~~~p~~~~weI~~~~l~l~~~iG~G~FG~Vy~a~~~~~~~~~~~~~~~VAvK~l~~~~~~---~--------------   65 (307)
T cd05098           3 SEYELPEDPRWEVPRDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATE---K--------------   65 (307)
T ss_pred             CCCCCCCCCCCCCCHHHEEECCEEECCCCEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCH---H--------------
T ss_conf             65679999877234899698469812667199999992677667870379999997876898---9--------------


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHH
Q ss_conf             68543346917999999988788865599998898720244677664300001022--1783353002478632426773
Q gi|254780623|r  179 LLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKL  256 (517)
Q Consensus       179 ~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l  256 (517)
                                            ..-+|.+|++.+.++.+    .+.|  =+.|...  ...-.|||||++|-.+.+.-..
T Consensus        66 ----------------------~~~~~~~E~~~l~~l~~----H~nI--v~l~g~~~~~~~~~lV~Ey~~~GsL~~~L~~  117 (307)
T cd05098          66 ----------------------DLSDLISEMEMMKMIGK----HKNI--INLLGACTQDGPLYVIVEYASKGNLREYLRA  117 (307)
T ss_pred             ----------------------HHHHHHHHHHHHHHHCC----CCCE--EEEEEEEEECCEEEEEEEECCCCCHHHHHHH
T ss_conf             ----------------------99999999999985149----9987--0799999889988999980699999999986


Q ss_pred             HH---------------HCCCHH---HHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             32---------------002256---89999999999989744866178786228980289535743403121698
Q gi|254780623|r  257 RA---------------CGHDLE---RLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       257 ~~---------------~~~d~~---~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      ..               ...+.+   .++..++.. +.-+-..|+.|.|.-|.||+++.++.+-+-|||+...+..
T Consensus       118 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~g-l~yLH~~~iiHRDLK~~NILl~~~~~~Ki~DFGla~~~~~  192 (307)
T cd05098         118 RRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARG-MEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHH  192 (307)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCC
T ss_conf             27764211246554721237999999999999999-9999848996786670202076899789715022322566


No 157
>cd07870 STKc_PFTAIRE2 The catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase. Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal re
Probab=98.68  E-value=9.5e-08  Score=79.22  Aligned_cols=133  Identities=17%  Similarity=0.176  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.||-|+||+|+-+.  +|+.||||+....-.+.                                 .....     
T Consensus        11 ~~lG~G~fg~V~~a~~~~--tg~~vAiK~i~~~~~~~---------------------------------~~~~~-----   50 (291)
T cd07870          11 EKLGEGSYATVYKGISRI--NGQLVALKVISMKTEEG---------------------------------VPFTA-----   50 (291)
T ss_pred             EEEECCCCCEEEEEEECC--CCCEEEEEEEEHHHCCC---------------------------------CHHHH-----
T ss_conf             893137280999999889--99799999983200123---------------------------------07899-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH----
Q ss_conf             59999889872024467766430000102217--833530024786324267733200225689999999999989----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT----  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi----  278 (517)
                       .+|.+.+..++     .+.|.  +.|.-+.+  .-.+||||++|--..... -...+.+.     .-+..|+.|+    
T Consensus        51 -~rEi~il~~l~-----HpnIv--~l~~~~~~~~~~~lv~Ey~~~~l~~~~~-~~~~~l~~-----~~i~~~~~Qil~aL  116 (291)
T cd07870          51 -IREASLLKGLK-----HANIV--LLHDIIHTKETLTFVFEYMHTDLAQYMI-QHPGGLHP-----YNVRLFMFQLLRGL  116 (291)
T ss_pred             -HHHHHHHHHCC-----CCCEE--EEEECCCCCCEEEEEEECCCCHHHHHHH-HCCCCCCH-----HHHHHHHHHHHHHH
T ss_conf             -99999998679-----99987--7831015786589999735724589999-66799999-----99999999999999


Q ss_pred             ---HHCCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             ---744866178786228980289535743403121
Q gi|254780623|r  279 ---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       279 ---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                         -..|+.|.|.-|.||+++.+|.+-+.|||+...
T Consensus       117 ~ylH~~~IiHRDlKPeNILi~~~~~vKl~DFGla~~  152 (291)
T cd07870         117 AYIHGQHILHRDLKPQNLLISYLGELKLADFGLARA  152 (291)
T ss_pred             HHHHHCCCEECCCCHHHEEECCCCCEEEEEECCCCC
T ss_conf             999878834144871325787899889987524302


No 158
>cd05086 PTKc_Aatyk2 Catalytic Domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage
Probab=98.68  E-value=9.2e-08  Score=79.32  Aligned_cols=136  Identities=15%  Similarity=0.191  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             66778888655550212888723687640310468877778899987532114685433469179999999887888655
Q gi|254780623|r  126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL  205 (517)
Q Consensus       126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~  205 (517)
                      =|++|+-|+||+|.+++++++..||||+.+++....                                       .+-+|
T Consensus         2 kiG~G~fG~Vy~~~~~~~~~~~~~~vk~~~~~~~~~---------------------------------------~~~~f   42 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSK---------------------------------------EQNEF   42 (268)
T ss_pred             CCCCCCCCEEEEEEEECCCEEEEEEEEEECCCCCHH---------------------------------------HHHHH
T ss_conf             084274849999999759816999999967878989---------------------------------------99999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCHHCCCHHC---CCCEEEEECCCCCCCCHHHHHHHHCC---C---HHHHHHHHHHHHHH
Q ss_conf             999988987202446776643000010221---78335300247863242677332002---2---56899999999999
Q gi|254780623|r  206 RLEAAAFSEMAENTVKDQGFRVPKIDWNRT---ERDVITMEWIDGVKISDTEKLRACGH---D---LERLSVTLVQSFLL  276 (517)
Q Consensus       206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s---t~~VLvmE~i~G~~i~d~~~l~~~~~---d---~~~la~~l~~~~~~  276 (517)
                      .+|+..+..++     .|.|.-  .|. .|   .+-.|||||++|-++.+.-.......   +   ..+++..++. -+.
T Consensus        43 ~~E~~~l~~l~-----HpnIv~--~~g-~~~~~~~~~iv~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~qia~-gl~  113 (268)
T cd05086          43 LQQGDPYRILQ-----HPNILQ--CLG-QCVEAIPYLLVFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAA-GVT  113 (268)
T ss_pred             HHHHHHHHHCC-----CCCCCE--EEE-EEEECCEEEEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHH-HHH
T ss_conf             99999998389-----988863--989-998899889999846898489997417666674259999999999999-999


Q ss_pred             HHHHCCEECCCCCCCEEEEECCCCEEEEECCHH
Q ss_conf             897448661787862289802895357434031
Q gi|254780623|r  277 HTLRDGFFHADLHPGNLFVDSKGYIVAVDMGIT  309 (517)
Q Consensus       277 qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~v  309 (517)
                      -+-..|+.|.|.-|.||+++.++.+-+-|||+.
T Consensus       114 yLH~~~ivHrDLK~~NiLl~~~~~~Ki~DFGla  146 (268)
T cd05086         114 HMHKHNFLHSDLALRNCFLTSDLTVKVGDYGIG  146 (268)
T ss_pred             HHHHCCCCCCCCCCCEEEECCCCCEEEEECCCC
T ss_conf             998689716777720189989997999877887


No 159
>cd05046 PTK_CCK4 Catalytic Domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4. Protein Tyrosine Kinase (PTK) family; Colon carcinoma kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is stil
Probab=98.68  E-value=1.3e-07  Score=78.23  Aligned_cols=145  Identities=15%  Similarity=0.206  Sum_probs=89.5

Q ss_pred             HHHH--HHHHHHHHHHHHHHHEECC---CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf             9867--6667788886555502128---8872368764031046887777889998753211468543346917999999
Q gi|254780623|r  121 CEFD--DPIAAASIAQVHPAVVHDI---NGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL  195 (517)
Q Consensus       121 ~~fd--ePlasASiaQVh~A~l~d~---~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~  195 (517)
                      +.|+  +.|+.||-|+||+|+.+..   ...+.||||+..+.-.                                 +  
T Consensus         5 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~---------------------------------~--   49 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKD---------------------------------E--   49 (275)
T ss_pred             HHCEEEEEEECCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCC---------------------------------H--
T ss_conf             99984249802888589999988886567858999998375678---------------------------------6--


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHHH--------CCCH--
Q ss_conf             988788865599998898720244677664300001022--1783353002478632426773320--------0225--
Q gi|254780623|r  196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRAC--------GHDL--  263 (517)
Q Consensus       196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~~--------~~d~--  263 (517)
                          ....+|.+|++.+.+++.     |.|  -+.|.-.  ...-.+||||++|-.+.+.-.....        ..+.  
T Consensus        50 ----~~~~~~~~E~~~l~~l~H-----pnI--V~l~g~~~~~~~~~ivmEy~~~G~L~~~l~~~~~~~~~~~~~~l~~~~  118 (275)
T cd05046          50 ----NLQSEFRRELDMFRKLSH-----KNV--VRLLGLCREAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQ  118 (275)
T ss_pred             ----HHHHHHHHHHHHHHHCCC-----CCC--CCEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCHHH
T ss_conf             ----899999999999986899-----799--919999988994699995558984999998624554334578889999


Q ss_pred             -HHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC
Q ss_conf             -6899999999999897448661787862289802895357434031216
Q gi|254780623|r  264 -ERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL  312 (517)
Q Consensus       264 -~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l  312 (517)
                       -.++..++.. +.-+-..|+.|.|.-|-||+++.++.+-+-|||+....
T Consensus       119 ~~~i~~qia~g-l~yLH~~~iiHrDLKp~NiLl~~~~~~Ki~DfGls~~~  167 (275)
T cd05046         119 KVALCTQIALG-MDHLSNARFVHRDLAARNCLVSSQREVKVSLLSLSKDV  167 (275)
T ss_pred             HHHHHHHHHHH-HHHHHCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCC
T ss_conf             99999999999-99996199316754524089827996786002101025


No 160
>cd05090 PTKc_Ror1 Catalytic Domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like orphan receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly
Probab=98.67  E-value=3.8e-08  Score=82.26  Aligned_cols=145  Identities=12%  Similarity=0.206  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHHHHEE--CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             86766677888865555021--2888723687640310468877778899987532114685433469179999999887
Q gi|254780623|r  122 EFDDPIAAASIAQVHPAVVH--DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT  199 (517)
Q Consensus       122 ~fdePlasASiaQVh~A~l~--d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  199 (517)
                      .|.++|+.||.|+||+|++.  +.+.|+.||||+.++.-.                     +        .         
T Consensus         8 ~~~~~IG~G~fG~Vykg~~~~~~~~~~~~VAiK~l~~~~~---------------------~--------~---------   49 (283)
T cd05090           8 RFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINN---------------------P--------Q---------   49 (283)
T ss_pred             EEEEEEECCCCCEEEEEEEECCCCCCCEEEEEEEECCCCC---------------------H--------H---------
T ss_conf             9987970485869999999478885888999999788789---------------------7--------8---------


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC---CCEEEEECCCCCCCCHHHHHHH----------------HC
Q ss_conf             8886559999889872024467766430000102217---8335300247863242677332----------------00
Q gi|254780623|r  200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE---RDVITMEWIDGVKISDTEKLRA----------------CG  260 (517)
Q Consensus       200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st---~~VLvmE~i~G~~i~d~~~l~~----------------~~  260 (517)
                       ..-+|.+|++-+.+++.     |.|.  +.|. .|+   +-.+||||++|-.+.+.-....                ..
T Consensus        50 -~~~~f~~E~~~l~~l~H-----pNIV--~l~g-~~~~~~~~~iv~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~~  120 (283)
T cd05090          50 -QWGEFQQEASLMAELHH-----PNIV--CLLG-VVTQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSS  120 (283)
T ss_pred             -HHHHHHHHHHHHHHCCC-----CCCC--EEEE-EEEECCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf             -99999999999986689-----8968--5999-9988997799999459990899997507654333332223321357


Q ss_pred             CCH---HHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             225---689999999999989744866178786228980289535743403121698
Q gi|254780623|r  261 HDL---ERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       261 ~d~---~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      .+.   -.++..++.+ +..+-..|+.|.|..|.||+++.++.+-+-|||+...+..
T Consensus       121 l~~~~~~~i~~qia~g-l~yLH~~~iiHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~  176 (283)
T cd05090         121 LDHGDFLHIAIQIAAG-MEYLSSHFFVHKDLAARNILIGEQLHVKISDLGLSREIYS  176 (283)
T ss_pred             CCHHHHHHHHHHHHHH-HHHHHHCCEECCCCCHHHEEECCCCCEEEEECCCCEECCC
T ss_conf             8999999999999999-9998449856450484127688999899981667726567


No 161
>cd05606 STKc_beta_ARK STKc_beta_ARK: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely e
Probab=98.67  E-value=4.3e-08  Score=81.87  Aligned_cols=140  Identities=16%  Similarity=0.189  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67788886555502128887236876403104688777788999875321146854334691799999998878886559
Q gi|254780623|r  127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR  206 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~  206 (517)
                      |+.|+-|+||+|+-++  +|+.||||+....   .+                        .    ..+-.....+|    
T Consensus         2 iG~G~fg~V~~~~~~~--t~~~~AiK~i~k~---~~------------------------~----~~~~~~~~~~e----   44 (278)
T cd05606           2 IGRGGFGEVYGCRKAD--TGKMYAMKCLDKK---RI------------------------K----MKQGETLALNE----   44 (278)
T ss_pred             CCCCCCEEEEEEEECC--CCCEEEEEEECHH---HH------------------------H----HHHHHHHHHHH----
T ss_conf             8308271999999889--9989999998488---83------------------------0----45668999999----


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH------
Q ss_conf             9998898720244677664300001022178--33530024786324267733200225689999999999989------
Q gi|254780623|r  207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT------  278 (517)
Q Consensus       207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi------  278 (517)
                        ..-+.....  .+.|.|  -+.+..+.++  -.+||||++|-.+.+.  +...+    .+.+.-+..|+.|+      
T Consensus        45 --~~~~~~~~~--~~~p~I--v~l~~~~~~~~~lylvmE~~~gG~L~~~--l~~~~----~~~e~~~~~~~~qil~aL~y  112 (278)
T cd05606          45 --RIMLSLVST--GDCPFI--VCMTYAFHTPDKLCFILDLMNGGDLHYH--LSQHG----VFSEAEMRFYAAEIILGLEH  112 (278)
T ss_pred             --HHHHHHHHC--CCCCCE--EEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCC----CCCHHHHHHHHHHHHHHHHH
T ss_conf             --999999851--899978--7999999989999999984599869999--98759----99999999999999999999


Q ss_pred             -HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             -7448661787862289802895357434031216989
Q gi|254780623|r  279 -LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       279 -~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                       -..|+.|-|.-|.||+++.+|.+-+.|||+...++..
T Consensus       113 lH~~gIiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~  150 (278)
T cd05606         113 MHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK  150 (278)
T ss_pred             HHHCCCEECCCCCCCCCCCCCCCEEEEECCEEEECCCC
T ss_conf             98789887235720024347897799755721664688


No 162
>cd06651 STKc_MEKK3 Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 
Probab=98.67  E-value=4.2e-08  Score=81.97  Aligned_cols=141  Identities=21%  Similarity=0.321  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-|+.||-|.||+|+-.+  +|+.||||+.+-+                       +..     .....++       -.
T Consensus         8 ~~lG~G~fg~Vy~~~~~~--tg~~~AvK~i~~~-----------------------~~~-----~~~~~~~-------~~   50 (266)
T cd06651           8 KLLGQGAFGRVYLCYDVD--TGRELAAKQVQFD-----------------------PES-----PETSKEV-------SA   50 (266)
T ss_pred             CEEECCCCEEEEEEEECC--CCCEEEEEEEECC-----------------------CCC-----HHHHHHH-------HH
T ss_conf             385127581999999889--9979999999536-----------------------354-----3669999-------99


Q ss_pred             HHHHHHHHHHHHCCCCCCCC-CCCHHCCCHHCCC-CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH---
Q ss_conf             59999889872024467766-4300001022178-335300247863242677332002256899999999999897---
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQG-FRVPKIDWNRTER-DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL---  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~st~-~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~---  279 (517)
                      +.+|.+.+.++..     |. |..=.++.+.+.. -.++|||++|-.+.+.  ++..+    .+.+..+..|+.|++   
T Consensus        51 ~~~Ei~~l~~l~H-----pnIv~~~~~~~~~~~~~l~ivmEy~~gg~L~~~--l~~~~----~l~e~~~~~~~~qil~aL  119 (266)
T cd06651          51 LECEIQLLKNLQH-----ERIVQYYGCLRDRAEKTLTIFMEYMPGGSVKDQ--LKAYG----ALTESVTRKYTRQILEGM  119 (266)
T ss_pred             HHHHHHHHHHCCC-----CCEEEEEEEEEECCCCEEEEEEECCCCCCHHHH--HHHCC----CCCHHHHHHHHHHHHHHH
T ss_conf             9999999985899-----997138999996899789999971195988999--98749----999999999999999999


Q ss_pred             ----HCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             ----4486617878622898028953574340312169
Q gi|254780623|r  280 ----RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       280 ----~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                          ..|+.|-|.-|.||+++.+|.+-+.|||+...++
T Consensus       120 ~ylH~~~IiHRDlKp~NIL~~~~~~vKl~DFG~a~~~~  157 (266)
T cd06651         120 SYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQ  157 (266)
T ss_pred             HHHHHCCEEECCCCHHHEEECCCCCEEECCCCCCCCCC
T ss_conf             99986996524387899678789998984157311025


No 163
>cd05590 STKc_nPKC_eta STKc_nPKC_eta: Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro
Probab=98.67  E-value=7.8e-08  Score=79.88  Aligned_cols=137  Identities=18%  Similarity=0.211  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67788886555502128887236876403104688777788999875321146854334691799999998878886559
Q gi|254780623|r  127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR  206 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~  206 (517)
                      |+.||-|+||+|+-+.  +|+.||||+.+....                .+       .-+        ...+.      
T Consensus         3 LG~G~fG~V~~a~~~~--tg~~~AiK~i~k~~~----------------~~-------~~~--------~~~~~------   43 (320)
T cd05590           3 LGKGSFGKVMLARLKE--SGRLYAVKVLKKDVI----------------LQ-------DDD--------VECTM------   43 (320)
T ss_pred             EEECCCCEEEEEEECC--CCCEEEEEEEEHHHC----------------CC-------HHH--------HHHHH------
T ss_conf             1118791999999999--998999999807884----------------38-------478--------99999------


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHC-CCH---HHHHHHHHHHHHHHHHH
Q ss_conf             9998898720244677664300001022178--33530024786324267733200-225---68999999999998974
Q gi|254780623|r  207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACG-HDL---ERLSVTLVQSFLLHTLR  280 (517)
Q Consensus       207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~-~d~---~~la~~l~~~~~~qi~~  280 (517)
                      +|.+.+....    +.|  .|.+.|..+.++  -.+||||++|-.+.+.  +...+ .+-   ..++..++.+ +.-+-.
T Consensus        44 ~E~~il~~~~----~hp--~Iv~l~~~f~~~~~~ylvmEy~~gGdL~~~--l~~~~~l~e~~a~~~~~qi~~a-L~yLH~  114 (320)
T cd05590          44 TEKRILSLAR----NHP--FLTQLYCCFQTPDRLFFVMEFVNGGDLMFH--IQKSRRFDEARARFYAAEITSA-LMFLHD  114 (320)
T ss_pred             HHHHHHHHHC----CCC--CEEEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHHH
T ss_conf             9999999727----999--786699999989999999976799879999--9743899999999999999999-999987


Q ss_pred             CCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             4866178786228980289535743403121
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                      .|+.|-|.-|.||+++.+|.+-+.|||++..
T Consensus       115 ~gIiHRDLKPeNILl~~~g~iKL~DFGlak~  145 (320)
T cd05590         115 KGIIYRDLKLDNVLLDHEGHCKLADFGMCKE  145 (320)
T ss_pred             CCEEECCCCCCCCEECCCCCEEECCHHHHHH
T ss_conf             8907622467534574689889704135343


No 164
>cd07851 STKc_p38 The catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and
Probab=98.67  E-value=1.9e-07  Score=76.96  Aligned_cols=142  Identities=16%  Similarity=0.209  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|++||-|+||+|+-+.  +|+.||||+.+......                                +....+     
T Consensus        21 ~~IG~G~fg~Vy~a~~~~--t~~~vAiK~i~~~~~~~--------------------------------~~~~~~-----   61 (343)
T cd07851          21 SPVGSGAYGQVCSAFDTK--TGRKVAIKKLSRPFQSA--------------------------------IHAKRT-----   61 (343)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHCCH--------------------------------HHHHHH-----
T ss_conf             698317294999999889--99899999988222497--------------------------------999999-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCC-----HHCCCCEEEEECCCCCCCCHHHHHHHHCCCH---HHHHHHHHHHHHH
Q ss_conf             5999988987202446776643000010-----2217833530024786324267733200225---6899999999999
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDW-----NRTERDVITMEWIDGVKISDTEKLRACGHDL---ERLSVTLVQSFLL  276 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~-----~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~---~~la~~l~~~~~~  276 (517)
                       .+|.+.+..+..    ..-|.+-.+|.     +-...-.+||||+. ..+.+.-  +......   +.++..++.+ +.
T Consensus        62 -~rEi~il~~l~H----pnIv~l~d~f~~~~~~~~~~~~yiv~e~~~-~~L~~~i--~~~~l~~~~i~~i~~qil~a-L~  132 (343)
T cd07851          62 -YRELRLLKHMDH----ENVIGLLDVFTPASSLEDFQDVYLVTHLMG-ADLNNIV--KCQKLSDDHIQFLVYQILRG-LK  132 (343)
T ss_pred             -HHHHHHHHHCCC----CCCCEEEEEEECCCCCCCCCEEEEEECCCC-CCHHHHH--HHCCCCHHHHHHHHHHHHHH-HH
T ss_conf             -999999997579----995417888831776555765899974789-7899999--70899999999999999999-99


Q ss_pred             HHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             89744866178786228980289535743403121698
Q gi|254780623|r  277 HTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       277 qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      -+-..|+.|.|.-|+||+++.++.+-++|||+....+.
T Consensus       133 ylH~~~IiHRDlKPeNILl~~~~~vKI~DFGlA~~~~~  170 (343)
T cd07851         133 YIHSAGIIHRDLKPSNIAVNEDCELKILDFGLARHTDD  170 (343)
T ss_pred             HHHHCCCEECCCCHHHEEECCCCCEEECCCCCCEECCC
T ss_conf             99878763376863655886889788714767623477


No 165
>cd07834 STKc_MAPK The catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylat
Probab=98.67  E-value=1.4e-08  Score=85.75  Aligned_cols=138  Identities=22%  Similarity=0.263  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|++||-|+||+|+-+.  +|+.||||+.+.......                                ..+.      
T Consensus         6 ~~lG~G~fg~Vy~a~~~~--t~~~vAiK~i~~~~~~~~--------------------------------~~~~------   45 (330)
T cd07834           6 KPIGSGAYGVVCSAVDTR--TGKKVAIKKISNVFDDLI--------------------------------DAKR------   45 (330)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCCCHH--------------------------------HHHH------
T ss_conf             794226384999999889--998999999883014989--------------------------------9999------


Q ss_pred             HHHHHHHHHHHHCCCCCCCC-CCCHHCCCHHC---CC-CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH--
Q ss_conf             59999889872024467766-43000010221---78-3353002478632426773320022568999999999998--
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQG-FRVPKIDWNRT---ER-DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH--  277 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~s---t~-~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q--  277 (517)
                      +.+|++.+..++.     +. |.+=.++..-+   .. -.|||||++| .+.+.  ++..+    .+.+.-+..|+.|  
T Consensus        46 ~~rEi~il~~l~H-----pnIv~l~~~~~~~~~~~~~~~yiVmE~~~~-dL~~~--i~~~~----~l~e~~~~~~~~qil  113 (330)
T cd07834          46 ILREIKILRHLKH-----ENIIGLLDIFRPPSPEDFNDVYIVTELMET-DLHKV--IKSPQ----PLSEDHIQYFLYQIL  113 (330)
T ss_pred             HHHHHHHHHHCCC-----CCCCEEEEEEECCCCCCCCEEEEEEECCCC-CHHHH--HHCCC----CCCHHHHHHHHHHHH
T ss_conf             9999999997699-----998618899941787778759999979998-89999--97189----999999999999999


Q ss_pred             -----HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             -----9744866178786228980289535743403121698
Q gi|254780623|r  278 -----TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       278 -----i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                           +-..|+.|.|.-|.||+++.+|.+-+.|||+...++.
T Consensus       114 ~aL~ylH~~~IiHRDiKPeNILl~~~~~vKL~DFGla~~~~~  155 (330)
T cd07834         114 RGLKYLHSAGVIHRDLKPSNLLVNSNCDLKICDFGLARGADP  155 (330)
T ss_pred             HHHHHHHHCCCCCCCCCHHHEEECCCCCEEECCCCCCHHCCC
T ss_conf             999999878863676778993156677733311331010356


No 166
>cd05570 STKc_PKC STKc_PKC: Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide 
Probab=98.67  E-value=1.7e-07  Score=77.29  Aligned_cols=134  Identities=18%  Similarity=0.258  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67788886555502128887236876403104688777788999875321146854334691799999998878886559
Q gi|254780623|r  127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR  206 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~  206 (517)
                      |+.||-|+||.|+-+.  +|+.||||+.+...-                ...           .-+    ..+      .
T Consensus         3 IG~G~fG~V~la~~~~--t~~~~AiK~i~k~~~----------------~~~-----------~~~----~~~------~   43 (318)
T cd05570           3 LGKGSFGKVLLAELKG--TDELYAIKVLKKDVV----------------LQD-----------DDV----ECT------M   43 (318)
T ss_pred             EEECCCEEEEEEEECC--CCCEEEEEEECHHHC----------------CCH-----------HHH----HHH------H
T ss_conf             6428891999999999--998999999827885----------------386-----------789----999------9


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH------
Q ss_conf             9998898720244677664300001022178--33530024786324267733200225689999999999989------
Q gi|254780623|r  207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT------  278 (517)
Q Consensus       207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi------  278 (517)
                      +|.+.+....    +.|.  |-+.|.-+.++  -.|||||++|-.+.+.  +...+    .+.+.-+..|+.|+      
T Consensus        44 ~E~~il~~~~----~hp~--Iv~l~~~f~~~~~lylVmEy~~gGdL~~~--l~~~~----~l~e~~a~~~~~qi~~aL~y  111 (318)
T cd05570          44 TEKRVLALAG----KHPF--LTQLHSCFQTKDRLFFVMEYVNGGDLMYH--IQQQG----RFPEPRARFYAAEIVLGLQF  111 (318)
T ss_pred             HHHHHHHHHC----CCCC--EEEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCC----CCCHHHHHHHHHHHHHHHHH
T ss_conf             9999998601----8997--76799999989999999966899878998--75458----99999999999999999999


Q ss_pred             -HHCCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             -744866178786228980289535743403121
Q gi|254780623|r  279 -LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       279 -~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                       -..|+.|-|.-|.||+++.+|.+-+.|||+...
T Consensus       112 LH~~~IiHRDLKPeNILl~~~g~iKL~DFGlak~  145 (318)
T cd05570         112 LHERGIIYRDLKLDNVLLDAEGHIKIADFGMCKE  145 (318)
T ss_pred             HHHCCEEECCCCCCCCEECCCCCEEECCCCHHHH
T ss_conf             9749778675676542165789788603403343


No 167
>PTZ00024 cyclin-dependent protein kinase; Provisional
Probab=98.67  E-value=9.2e-08  Score=79.31  Aligned_cols=143  Identities=18%  Similarity=0.237  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +=|+.||-|+||+|.-+.  +|+.||||+.+..-..                 .            ..++    ...+..
T Consensus        14 ~liG~G~fG~V~~a~d~~--t~~~vAiK~i~~~~~~-----------------~------------~~~~----~~~~~~   58 (325)
T PTZ00024         14 NFLGEGSYGKVYKAYDTI--LKKEVAIKKMKINKIS-----------------N------------YIDD----CGINFV   58 (325)
T ss_pred             CEEECCCCEEEEEEEECC--CCCEEEEEEEEHHHCC-----------------C------------HHHH----HHHHHH
T ss_conf             897207584999999889--9989999998734442-----------------1------------7777----666899


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHHHH
Q ss_conf             5999988987202446776643000010221783--35300247863242677332002----25689999999999989
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGH----DLERLSVTLVQSFLLHT  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~----d~~~la~~l~~~~~~qi  278 (517)
                      +.+|.+-+..++.     +.  |-+.|.-+++++  .+||||++| .+.+.  +...+.    ..+.++..++.+ +.-+
T Consensus        59 ~~rEi~il~~l~H-----~n--Iv~~~~~~~~~~~~~iv~E~~~~-~L~~~--l~~~~~l~~~~~~~i~~qil~g-l~~l  127 (325)
T PTZ00024         59 LLREIKIMKEIKH-----KN--IMSALDLYCEKDYINLVMEIMDY-DLAKI--INRKIFLTDSQKKCILLQILNG-LNVL  127 (325)
T ss_pred             HHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCC-CHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHH
T ss_conf             9999999986799-----89--89398999968956999954787-88999--9716999999999999999999-9999


Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             74486617878622898028953574340312169
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                      -..|+.|-|.-|.||+++.+|.+-+.|||+.....
T Consensus       128 H~~~IiHRDlKPeNILl~~~~~vKi~DFGla~~~~  162 (325)
T PTZ00024        128 HKYYFMHRDLSPANIFINKKGEVKIADFGLCSKYA  162 (325)
T ss_pred             HHCCEEECCCCHHHEEECCCCCEEECCCCCCCCCC
T ss_conf             98897406677899478899998987677772334


No 168
>cd05627 STKc_NDR2 STKc_NDR2: Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regulating neuronal growth and differentiation, as well as in facilitating neurite
Probab=98.67  E-value=2.6e-08  Score=83.64  Aligned_cols=249  Identities=18%  Similarity=0.184  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.||-|.||+|+-++  +|+.||+|+.+..       +         ..+               .+....+..   
T Consensus         7 k~lG~G~fG~V~~a~~~~--tg~~~AiK~i~k~-------~---------~~~---------------~~~~~~~~~---   50 (360)
T cd05627           7 KVIGRGAFGEVRLVQKKD--TGHIYAMKILRKA-------D---------MLE---------------KEQVAHIRA---   50 (360)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEEHH-------H---------CCC---------------HHHHHHHHH---
T ss_conf             680128882999999889--9989999998068-------8---------458---------------999999999---


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHC-CCH---HHHHHHHHHHHHHHH
Q ss_conf             5999988987202446776643000010221783--3530024786324267733200-225---689999999999989
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACG-HDL---ERLSVTLVQSFLLHT  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~-~d~---~~la~~l~~~~~~qi  278 (517)
                         |...+.+..     .+.  |.+.|..+.+++  .|||||++|-.+.+.-  ...+ .+-   ..++..++.+ +.-+
T Consensus        51 ---E~~il~~~~-----hp~--Iv~l~~~f~~~~~~ylvmEy~~gGdL~~~l--~~~~~l~e~~~~~~~~qi~~a-L~~l  117 (360)
T cd05627          51 ---ERDILVEAD-----GAW--VVKMFYSFQDKRNLYLIMEFLPGGDMMTLL--MKKDTLSEEATQFYIAETVLA-IDAI  117 (360)
T ss_pred             ---HHHHHHHCC-----CCC--CCEEEEEEEECCEEEEEEECCCCCCHHHHH--HHCCCCCHHHHHHHHHHHHHH-HHHH
T ss_conf             ---999998789-----998--774999999899999999588997089997--616998999999999999999-9999


Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCC-------HHHHHHHHHH----HH---C
Q ss_conf             74486617878622898028953574340312169899999997669997187-------2789999998----41---2
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRD-------YQRVADVHFE----AG---Y  344 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D-------~~~~~~~l~~----lg---~  344 (517)
                      -..|+.|-|.-|.||+++.+|.+-+.|||++..+.+..+..+..-+.+-...|       ...-++....    +.   .
T Consensus       118 H~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v  197 (360)
T cd05627         118 HQLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTV  197 (360)
T ss_pred             HHCCEEECCCCCCEEEECCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCE
T ss_conf             85768861266662788799988984267652233123310110235577532221224321000000023333356611


Q ss_pred             -CCCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             -6677893689999998521001334333113568999997545279712888999999999988499876889888999
Q gi|254780623|r  345 -VPRHHNRFSFAQAIRAIGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVARMLNPEFNMWVS  423 (517)
Q Consensus       345 -~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~~~ll~r~l~~lEG~~~~LdP~~d~~~~  423 (517)
                       .+...-++.       +...-++...+=+++|-++.+++.=..-|.-.-+.+.  . +.++.-.. -....|+.++-..
T Consensus       198 GTp~YmAPEv-------l~~~~y~~~~DiWSlGvilYeml~G~~PF~~~~~~~~--~-~~I~~~~~-~~~~p~~~~is~~  266 (360)
T cd05627         198 GTPDYIAPEV-------FMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQET--Y-RKVMNWKE-TLVFPPEVPISEK  266 (360)
T ss_pred             ECHHHCCHHH-------HCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH--H-HHHHCCCC-CCCCCCCCCCCHH
T ss_conf             4842349845-------4699988899999999999999749899899998999--9-99973766-4227998988989


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999998
Q gi|254780623|r  424 SEPIVEEWIR  433 (517)
Q Consensus       424 ~~p~~~~~l~  433 (517)
                      ++.++.+++.
T Consensus       267 akDLI~~LL~  276 (360)
T cd05627         267 AKDLILRFCT  276 (360)
T ss_pred             HHHHHHHHCC
T ss_conf             9999998656


No 169
>cd06611 STKc_SLK_like Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the 
Probab=98.66  E-value=1.1e-07  Score=78.64  Aligned_cols=141  Identities=17%  Similarity=0.184  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.||.|+-|.||+|+-+.  +|+.||||+.+..-.                              .-.+          +
T Consensus        11 ~~iG~G~fg~V~~~~~~~--~~~~vAvK~i~~~~~------------------------------~~~~----------~   48 (280)
T cd06611          11 GELGDGAFGKVYKAQHKE--TGLFAAAKIIQIESE------------------------------EELE----------D   48 (280)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEECCCH------------------------------HHHH----------H
T ss_conf             598027784999999889--996999999810898------------------------------9999----------9


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHH---HHHHHHHHHHHHHHH
Q ss_conf             599998898720244677664300001022178--335300247863242677332002256---899999999999897
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLE---RLSVTLVQSFLLHTL  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~l~~~~~~qi~  279 (517)
                      +.+|++.+.+++.     |.  |-+.|.-+.++  -.+||||++|-.+.+.-.-...+.+-.   .++..++.+ +.-+-
T Consensus        49 ~~~Ei~il~~l~H-----pn--Iv~l~~~~~~~~~~~ivmE~~~gg~L~~~l~~~~~~~~e~~~~~i~~qi~~a-l~ylH  120 (280)
T cd06611          49 FMVEIDILSECKH-----PN--IVGLYEAYFYENKLWILIEFCDGGALDSIMLELERGLTEPQIRYVCRQMLEA-LNFLH  120 (280)
T ss_pred             HHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHH
T ss_conf             9999999986799-----89--9909999998998999997689995999999748998999999999999999-99999


Q ss_pred             HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             448661787862289802895357434031216989
Q gi|254780623|r  280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      ..|+.|-|.-|.||+++.+|.+-+.|||+...+...
T Consensus       121 ~~~iiHRDIKp~NILl~~~~~vKl~DFG~s~~~~~~  156 (280)
T cd06611         121 SHKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKST  156 (280)
T ss_pred             HCCCCEEECCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf             889803307626512568999999527776166887


No 170
>cd05587 STKc_cPKC STKc_cPKC:  Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and ga
Probab=98.66  E-value=1.1e-07  Score=78.86  Aligned_cols=139  Identities=19%  Similarity=0.246  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.||-|+||.|+-+.  +|+.|||||.+....  +..                         .   +.. ..     
T Consensus         6 k~LG~G~fG~V~la~~~~--t~~~~AiKvi~k~~~--~~~-------------------------~---~~~-~~-----   47 (324)
T cd05587           6 MVLGKGSFGKVMLAERKG--TDELYAIKILKKDVI--IQD-------------------------D---DVE-CT-----   47 (324)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHC--CCH-------------------------H---HHH-HH-----
T ss_conf             796317690999999999--998999999837883--285-------------------------7---899-99-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCH----HHHHHHHHHHHHHHH
Q ss_conf             5999988987202446776643000010221783--3530024786324267733200225----689999999999989
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDL----ERLSVTLVQSFLLHT  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~----~~la~~l~~~~~~qi  278 (517)
                       ..|.+.+....     .+.+ |-+.|.-+.+.+  .+||||++|-.+.+.  +...+.-.    ..++..++.+ +.-+
T Consensus        48 -~~E~~il~~~~-----~~~~-Iv~l~~~f~~~~~lylvmEy~~GGdL~~~--l~~~~~l~e~~a~~~~~qi~~a-L~yl  117 (324)
T cd05587          48 -MVEKRVLALPG-----KPPF-LTQLHSCFQTMDRLYFVMEYVNGGDLMYH--IQQVGKFKEPHAVFYAAEIAIG-LFFL  117 (324)
T ss_pred             -HHHHHHHHHCC-----CCCE-EEEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHH
T ss_conf             -99999998636-----9982-83899999989999999948799848999--9980999999999999999999-9999


Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             744866178786228980289535743403121
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                      -..|+.|-|.-|.||+++.+|.+-+.|||++..
T Consensus       118 H~~~IiHRDLKPeNILl~~~g~iKL~DFGlak~  150 (324)
T cd05587         118 HSKGIIYRDLKLDNVMLDAEGHIKIADFGMCKE  150 (324)
T ss_pred             HHCCCEECCCCCCCEEECCCCCEEEEECCHHHH
T ss_conf             988946055675332575689788600431233


No 171
>cd07847 STKc_CDKL1_4 The catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4 subfamily. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformatio
Probab=98.66  E-value=4.9e-08  Score=81.46  Aligned_cols=142  Identities=17%  Similarity=0.228  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.|+-|.||+|.-+.  +|+.||||+.+..-     .                      +  .   ...+..     
T Consensus         7 ~~lG~G~fg~V~~~~~~~--t~~~vAiK~~~~~~-----~----------------------~--~---~~~~~~-----   47 (286)
T cd07847           7 GKIGEGSYGVVFKCRNRE--TGQIVAIKKFVESE-----D----------------------D--P---VIKKIA-----   47 (286)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECHHC-----C----------------------C--H---HHHHHH-----
T ss_conf             284136085999999889--99899999974002-----4----------------------8--7---899999-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHC
Q ss_conf             59999889872024467766430000102217833530024786324267733200225---689999999999989744
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDL---ERLSVTLVQSFLLHTLRD  281 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~---~~la~~l~~~~~~qi~~~  281 (517)
                       .+|.+.+..++.    ..-|.+=.+|. -.+.-.+||||++|-.+.+...- ..+.+.   +.++..++.+.- -+-..
T Consensus        48 -~~Ei~~l~~l~H----pnIv~~~~~~~-~~~~~~lVmE~~~~~~l~~l~~~-~~~l~e~~~~~i~~qll~al~-ylH~~  119 (286)
T cd07847          48 -LREIRMLKQLKH----PNLVNLIEVFR-RKRRLHLVFEYCDHTVLNELEKN-PRGVPEHQIKKIIWQTLQAVN-FCHKH  119 (286)
T ss_pred             -HHHHHHHHHCCC----CCCCEEEEEEE-ECCEEEEEEECCCCCCHHHHHHC-CCCCCHHHHHHHHHHHHHHHH-HHHHC
T ss_conf             -999999987799----79893999995-69989999965899849999973-799899999999999999999-99988


Q ss_pred             CEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             86617878622898028953574340312169
Q gi|254780623|r  282 GFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       282 GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                      |+.|.|.-|.||+++.+|.+-+.|||+...++
T Consensus       120 ~iiHRDlKpeNILl~~~~~iKl~DFG~a~~~~  151 (286)
T cd07847         120 NCIHRDVKPENILITKQGQIKLCDFGFARILT  151 (286)
T ss_pred             CCCCCCCCHHHEEECCCCCEEEEECCCCEECC
T ss_conf             87426455111038789949996412530135


No 172
>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic Domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells
Probab=98.66  E-value=1.3e-07  Score=78.11  Aligned_cols=138  Identities=17%  Similarity=0.213  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      ++|++|+-|+||+|++.++..+.+||||..+....                                       ..++.+
T Consensus         1 k~iG~G~fG~Vy~g~~~~~~~~~~vavK~~~~~~~---------------------------------------~~~~~~   41 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRASAS---------------------------------------VQEQMK   41 (269)
T ss_pred             CCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCC---------------------------------------HHHHHH
T ss_conf             90753887389999987897255999999788789---------------------------------------799999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC---CCCEEEEECCCCCCCCHHHHHHHHC----CCHH---HHHHHHHHHH
Q ss_conf             5999988987202446776643000010221---7833530024786324267733200----2256---8999999999
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRT---ERDVITMEWIDGVKISDTEKLRACG----HDLE---RLSVTLVQSF  274 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s---t~~VLvmE~i~G~~i~d~~~l~~~~----~d~~---~la~~l~~~~  274 (517)
                      |.+|++.+.+++.     |.|.  +.| .+|   .+..|||||++|-.+.+.-.-...+    .+..   +++..++.. 
T Consensus        42 f~~E~~~l~~l~H-----pNIv--~~~-g~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~~~~~qia~g-  112 (269)
T cd05087          42 FLEEAQPYRSLQH-----PNLL--QCL-GQCTEVTPYLLVMEFCPLGDLKGYLRSCRAAELMTPDPRTLQRMACEIASG-  112 (269)
T ss_pred             HHHHHHHHHHCCC-----CCEE--EEE-EEECCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH-
T ss_conf             9999999984899-----8886--795-587028827999981689869999874454455783899999999999999-


Q ss_pred             HHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHE
Q ss_conf             998974486617878622898028953574340312
Q gi|254780623|r  275 LLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITG  310 (517)
Q Consensus       275 ~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg  310 (517)
                      +.-+-..|+.|.|.-|.||+++.++.+-+-|||+..
T Consensus       113 l~yLH~~~iiHrDLK~~NiLl~~~~~vKl~DFGls~  148 (269)
T cd05087         113 LLHLHKHNYVHSDLALRNCLLTSDLTVKIGDYGLSH  148 (269)
T ss_pred             HHHHHHCCCCCCCCCCCCEEECCCCCEEEEECCCCC
T ss_conf             999952995646455030658689838995557875


No 173
>cd06629 STKc_MAPKKK_Bck1_like Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressio
Probab=98.66  E-value=3.7e-08  Score=82.39  Aligned_cols=144  Identities=24%  Similarity=0.307  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-|+.||-|+||+|.-.+  +|+.||||+.+-.-                ..    . .+   -....++...      .
T Consensus         7 ~~iG~G~fg~V~~a~~~~--tg~~vAvK~i~~~~----------------~~----~-~~---~~~~~~~~~~------~   54 (272)
T cd06629           7 ELIGKGTYGRVYLALNVT--TGEMMAVKQVELPA----------------TI----A-GR---HDSRQKDMVK------A   54 (272)
T ss_pred             CEEECCCCCEEEEEEECC--CCCEEEEEEECCCC----------------CC----C-CC---HHHHHHHHHH------H
T ss_conf             898017083999999889--99899999971010----------------21----2-11---5788899999------9


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH---
Q ss_conf             599998898720244677664300001022178--335300247863242677332002256899999999999897---
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL---  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~---  279 (517)
                      +.+|.+.+.++..     |.| |. .+.-+.++  -.+||||++|-.+.+.-  +..+    .+-+..+..|+.|++   
T Consensus        55 ~~~Ei~~l~~l~H-----pnI-v~-~~~~~~~~~~~~ivmEy~~~g~L~~~l--~~~~----~l~e~~~~~~~~qll~gl  121 (272)
T cd06629          55 LRSEIETLKDLDH-----LNI-VQ-YLGFETTEEYLSIFLEYVPGGSIGSCL--RTYG----RFEEQLVRFFTEQVLEGL  121 (272)
T ss_pred             HHHHHHHHHHCCC-----CCE-EE-EEEEEEECCEEEEEEEECCCCCHHHHH--HHCC----CCCHHHHHHHHHHHHHHH
T ss_conf             9999999986899-----888-65-999995099899999903978789999--8659----999999999999999999


Q ss_pred             ----HCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             ----4486617878622898028953574340312169
Q gi|254780623|r  280 ----RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       280 ----~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                          ..|+.|-|.-|.||+++.+|.+-+.|||+....+
T Consensus       122 ~yLH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~  159 (272)
T cd06629         122 AYLHSKGILHRDLKADNLLVDADGICKISDFGISKKSD  159 (272)
T ss_pred             HHHHHCCCCCCCCCHHHEEECCCCCEEEEECCCCEECC
T ss_conf             99998796178787211799899989994378771557


No 174
>cd05111 PTK_HER3 Pseudokinase Domain of the Protein Tyrosine Kinase, HER3. Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r
Probab=98.66  E-value=2.5e-07  Score=75.91  Aligned_cols=142  Identities=14%  Similarity=0.145  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCE----EEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             666778888655550212888723----6876403104688777788999875321146854334691799999998878
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRK----VAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTK  200 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~----VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~  200 (517)
                      +.|++||-|+||+|++..  .|+.    ||||+.+...                            +     +      .
T Consensus        13 ~~lG~G~FG~Vykg~~~~--~~~~~~~~vaiK~~~~~~----------------------------~-----~------~   51 (279)
T cd05111          13 KVLGSGVFGTVHKGFWIP--EGDSIKIPVAIKTIQDRS----------------------------G-----R------Q   51 (279)
T ss_pred             EEEECCCCCEEEEEEEEC--CCCEEEEEEEEEEECCCC----------------------------C-----H------H
T ss_conf             698127791999899937--998898999999926655----------------------------5-----7------9


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHH---HHHHHHHHH
Q ss_conf             8865599998898720244677664300001022178--33530024786324267733200225689---999999999
Q gi|254780623|r  201 MEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERL---SVTLVQSFL  275 (517)
Q Consensus       201 ~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~l---a~~l~~~~~  275 (517)
                      ..-+|..|+..+.+++.     |.|  -+.|. +|..  -.+||||+++-++.+.-.-.....+...+   +..++.. +
T Consensus        52 ~~~~~~~e~~~l~~l~H-----pnI--v~l~g-~~~~~~~~iv~e~~~~GsL~~~l~~~~~~~~~~~~~~~~~qia~g-l  122 (279)
T cd05111          52 TFTEITDHMLAMGSLDH-----AYI--VRLLG-ICPGASLQLVTQLSPLGSLLDHVRQHRGSLDPQRLLNWCVQIAKG-M  122 (279)
T ss_pred             HHHHHHHHHHHHHHCCC-----CCC--CEEEE-EEECCEEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-H
T ss_conf             99999999999983899-----888--90999-993890799999589995789886457999999999999999999-9


Q ss_pred             HHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHH
Q ss_conf             98974486617878622898028953574340312169899
Q gi|254780623|r  276 LHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRE  316 (517)
Q Consensus       276 ~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~  316 (517)
                      .-+-..|+.|.|.-|.||+++.++.+-+-|||+...+.+..
T Consensus       123 ~yLH~~~iiHrDlK~~NiLl~~~~~~Ki~DFGla~~~~~~~  163 (279)
T cd05111         123 YYLEEHRMVHRNLAARNILLKSDSQVQIADFGVADLLYPDD  163 (279)
T ss_pred             HHHHHCCCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCC
T ss_conf             99976894446667200668789819998556743067888


No 175
>cd05593 STKc_PKB_gamma STKc_PKB_gamma: Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent
Probab=98.66  E-value=1.3e-07  Score=78.19  Aligned_cols=136  Identities=17%  Similarity=0.182  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67788886555502128887236876403104688777788999875321146854334691799999998878886559
Q gi|254780623|r  127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR  206 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~  206 (517)
                      |+.|+-|+||.|+-+.  +|+.||+|+.+....                ..   .           ++ ..      ...
T Consensus         3 LG~G~fG~V~l~~~k~--tg~~~AiKii~k~~~----------------~~---~-----------~~-~~------~~~   43 (325)
T cd05593           3 LGKGTFGKVILVREKA--SGKYYAMKILKKEVI----------------IA---K-----------DE-VA------HTL   43 (325)
T ss_pred             EEECCCEEEEEEEECC--CCCEEEEEEECHHHC----------------CC---H-----------HH-HH------HHH
T ss_conf             5407085999999889--998999999826885----------------48---7-----------99-99------999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHH----HHHHHHHHHHHHHHHH
Q ss_conf             99988987202446776643000010221783--35300247863242677332002256----8999999999998974
Q gi|254780623|r  207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLE----RLSVTLVQSFLLHTLR  280 (517)
Q Consensus       207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~----~la~~l~~~~~~qi~~  280 (517)
                      +|.+-+.+.+     +|.|  .+.|..+.+++  .+||||++|-.+.+.  +...+.-..    .++..++.+ +.-+-.
T Consensus        44 ~E~~iL~~l~-----Hp~I--v~l~~~f~~~~~lylVmEy~~gG~L~~~--l~~~~~l~e~~~~~~~~qil~a-L~yLH~  113 (325)
T cd05593          44 TESRVLKNTR-----HPFL--TSLKYSFQTKDRLCFVMEYVNGGELFFH--LSRERVFSEDRTRFYGAEIVSA-LDYLHS  113 (325)
T ss_pred             HHHHHHHHCC-----CCCC--CEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHHH
T ss_conf             9999998689-----9988--7699999989999999985599989999--8635899999999999999999-999975


Q ss_pred             CCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             4866178786228980289535743403121
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                      .|+.|-|.-|.||+++.+|.+-+.|||+...
T Consensus       114 ~~IiHRDLKPeNILld~~g~iKL~DFGlak~  144 (325)
T cd05593         114 GKIVYRDLKLENLMLDKDGHIKITDFGLCKE  144 (325)
T ss_pred             CCEEECCCCCCCCCCCCCCCEEECCCCHHHH
T ss_conf             9888511575456636789785322023342


No 176
>cd05613 STKc_MSK1_N STKc_MSK1_N: Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the 
Probab=98.66  E-value=3.3e-08  Score=82.81  Aligned_cols=141  Identities=15%  Similarity=0.240  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHHHE-ECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             6667788886555502-128887236876403104688777788999875321146854334691799999998878886
Q gi|254780623|r  125 DPIAAASIAQVHPAVV-HDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM  203 (517)
Q Consensus       125 ePlasASiaQVh~A~l-~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El  203 (517)
                      +.|++||-|+||.|+- .+.++|+.|||||.+..--                .++          ..    ....+.   
T Consensus         6 ~~iG~G~fg~V~~~~~~~~~~t~~~~AiK~i~k~~~----------------~~~----------~~----~~~~~~---   52 (290)
T cd05613           6 KVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATI----------------VQK----------AK----TTEHTR---   52 (290)
T ss_pred             EEEECCCCEEEEEEEECCCCCCCCEEEEEEEEHHHH----------------HHH----------HH----HHHHHH---
T ss_conf             795138883999999853278894999999807884----------------010----------67----899999---


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH----
Q ss_conf             5599998898720244677664300001022178--3353002478632426773320022568999999999998----
Q gi|254780623|r  204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH----  277 (517)
Q Consensus       204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q----  277 (517)
                         .|.+-+..++    ..|.|  -+.|..+.++  -.+||||++|-.+.+.  +...+    .+.+.-+..|+.|    
T Consensus        53 ---~E~~il~~l~----~~p~I--v~l~~~~~~~~~~ylvmEy~~gg~L~~~--l~~~~----~l~e~~~~~~~~qil~a  117 (290)
T cd05613          53 ---TERQVLEHIR----QSPFL--VTLHYAFQTDTKLHLILDYINGGELFTH--LSQRE----RFKEQEVQIYSGEIVLA  117 (290)
T ss_pred             ---HHHHHHHHCC----CCCCE--EEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCC----CCCHHHHHHHHHHHHHH
T ss_conf             ---9999998548----99967--8999999989999999967799888999--98749----99999999999999999


Q ss_pred             ---HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             ---974486617878622898028953574340312169
Q gi|254780623|r  278 ---TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       278 ---i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                         +-..|+.|-|.-|.||+++.+|.+.+.|||+...+.
T Consensus       118 l~ylH~~~IiHRDiKpeNILl~~~g~ikl~DFGls~~~~  156 (290)
T cd05613         118 LEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFH  156 (290)
T ss_pred             HHHHHHCCCEECCCCHHHCCCCCCCCEEECCCCCCEEEC
T ss_conf             999998894532366365446689988983276011212


No 177
>cd05057 PTKc_EGFR_like Catalytic Domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea
Probab=98.66  E-value=1.3e-07  Score=78.21  Aligned_cols=148  Identities=16%  Similarity=0.145  Sum_probs=91.3

Q ss_pred             HHH--HHHHHHHHHHHHHHHEECCC--CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             867--66677888865555021288--87236876403104688777788999875321146854334691799999998
Q gi|254780623|r  122 EFD--DPIAAASIAQVHPAVVHDIN--GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ  197 (517)
Q Consensus       122 ~fd--ePlasASiaQVh~A~l~d~~--~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~  197 (517)
                      .|+  +.|++||.|.||+|++...+  ...+||||+.+..-.                             .+..     
T Consensus         8 d~e~~~~lG~G~fG~Vyk~~~~~~~~~~~~~vaiK~~~~~~~-----------------------------~~~~-----   53 (279)
T cd05057           8 ELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREATS-----------------------------PKAN-----   53 (279)
T ss_pred             HCEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEEECCCCC-----------------------------HHHH-----
T ss_conf             998826973188819998999279986007999999887678-----------------------------7899-----


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHH---HHHHHHHH
Q ss_conf             878886559999889872024467766430000102217833530024786324267733200225689---99999999
Q gi|254780623|r  198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERL---SVTLVQSF  274 (517)
Q Consensus       198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~l---a~~l~~~~  274 (517)
                           -+|.+|+..+.+++.-+    -|.+=.++  .+....+||||++|-++.+.-.-.....+...+   +..++.+ 
T Consensus        54 -----~~~~~E~~~l~~l~Hpn----Iv~l~g~~--~~~~~~lV~e~~~~GsL~~~l~~~~~~l~~~~~~~~~~qia~g-  121 (279)
T cd05057          54 -----KEILDEAYVMASVDHPH----VVRLLGIC--LTSQVQLITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKG-  121 (279)
T ss_pred             -----HHHHHHHHHHHHCCCCC----EEEECEEE--ECCCEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-
T ss_conf             -----99999999998479998----86001289--5497699999579995899997347899999999999999999-


Q ss_pred             HHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             99897448661787862289802895357434031216989
Q gi|254780623|r  275 LLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       275 ~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      +.-+-..|+.|.|.-|.||+++.++.+.+-|||+...++..
T Consensus       122 l~yLH~~~iiHRDlK~~NILl~~~~~~ki~DFGls~~~~~~  162 (279)
T cd05057         122 MSYLEERRLVHRDLAARNVLVKTPNHVKITDFGLAKLLDAD  162 (279)
T ss_pred             HHHHHHCCCCCCCCCHHHEEECCCCCEEEECCCCCEECCCC
T ss_conf             99997689634657631033689992899606643316899


No 178
>cd05603 STKc_SGK2 STKc_SGK2: Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.
Probab=98.65  E-value=1.6e-07  Score=77.49  Aligned_cols=137  Identities=17%  Similarity=0.194  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67788886555502128887236876403104688777788999875321146854334691799999998878886559
Q gi|254780623|r  127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR  206 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~  206 (517)
                      |+.||-|+||+|+-+.  +|+.||+|+.+...-                ...               .....+..|    
T Consensus         3 IG~G~fG~V~~a~~~~--tg~~~AiK~i~k~~~----------------~~~---------------~~~~~~~~E----   45 (321)
T cd05603           3 IGKGSFGKVLLAKRKS--DGSFYAVKVLQKKTI----------------LKK---------------KEQNHIMAE----   45 (321)
T ss_pred             EEECCCEEEEEEEECC--CCCEEEEEEEEHHHH----------------CCH---------------HHHHHHHHH----
T ss_conf             6238794999999889--998999999837880----------------488---------------999999999----


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHC-CCH---HHHHHHHHHHHHHHHHH
Q ss_conf             99988987202446776643000010221783--3530024786324267733200-225---68999999999998974
Q gi|254780623|r  207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACG-HDL---ERLSVTLVQSFLLHTLR  280 (517)
Q Consensus       207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~-~d~---~~la~~l~~~~~~qi~~  280 (517)
                        ..-+   .+.. ++|.  |-+.|..+.+++  .+||||++|-.+.+.  +...+ .+-   ..++..++.+ +.-+-.
T Consensus        46 --~~il---l~~l-~Hp~--Iv~l~~~f~~~~~lyivmEy~~gGdL~~~--l~~~~~~~e~~a~~~~~qi~~a-L~yLH~  114 (321)
T cd05603          46 --RNVL---LKNL-KHPF--LVGLHYSFQTAEKLYFVLDYVNGGELFFH--LQRERCFLEPRARFYAAEVASA-IGYLHS  114 (321)
T ss_pred             --HHHH---HHHC-CCCC--CCCEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHHH
T ss_conf             --9999---9868-9989--99099999989999999968799869999--9874999999999999999999-999998


Q ss_pred             CCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             4866178786228980289535743403121
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                      .|+.|-|.-|.||+++.+|.+.+.|||+...
T Consensus       115 ~~IiHRDLKPeNILld~~g~iKL~DFGlak~  145 (321)
T cd05603         115 LNIIYRDLKPENILLDSQGHVVLTDFGLCKE  145 (321)
T ss_pred             CCCEECCCCCCCCCCCCCCCEEECCCHHHHH
T ss_conf             8944024365540115889888513254331


No 179
>cd05591 STKc_nPKC_epsilon STKc_nPKC_epsilon: Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes 
Probab=98.65  E-value=1.7e-07  Score=77.22  Aligned_cols=134  Identities=16%  Similarity=0.244  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67788886555502128887236876403104688777788999875321146854334691799999998878886559
Q gi|254780623|r  127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR  206 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~  206 (517)
                      |+.|+-|+||.|+-+.  +|+.||||+.+....  ++.+                            +.. ..      .
T Consensus         3 lG~G~fG~V~la~~~~--t~~~~AiKvi~k~~~--~~~~----------------------------~~~-~~------~   43 (321)
T cd05591           3 LGKGSFGKVMLAELKG--TDEVYAIKVLKKDVI--LQDD----------------------------DVD-CT------M   43 (321)
T ss_pred             EEECCCEEEEEEEECC--CCCEEEEEEEEHHHC--CCHH----------------------------HHH-HH------H
T ss_conf             8438792999999999--998999999807885--3846----------------------------799-99------9


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH-------
Q ss_conf             9998898720244677664300001022178--3353002478632426773320022568999999999998-------
Q gi|254780623|r  207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH-------  277 (517)
Q Consensus       207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q-------  277 (517)
                      .|.+.+...    .+.|.  |.+.|..+.++  -.+||||++|-.+.+.  +...+    .+.+..+..|+.|       
T Consensus        44 ~E~~il~~~----~~Hp~--Iv~l~~~f~~~~~lylvmEy~~gGdL~~~--l~~~~----~l~e~~~~~~~~qi~~aL~y  111 (321)
T cd05591          44 TEKRILALA----AKHPF--LTALHCCFQTKDRLFFVMEYVNGGDLMFQ--IQRSR----KFDEPRSRFYAAEVTLALMF  111 (321)
T ss_pred             HHHHHHHHH----CCCCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCC----CCCHHHHHHHHHHHHHHHHH
T ss_conf             999999984----79998--89599999989999999958899818999--98749----99999999999999999999


Q ss_pred             HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             9744866178786228980289535743403121
Q gi|254780623|r  278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                      +-..|+.|-|.-|.||+++.+|.+-+.|||+...
T Consensus       112 lH~~gIiHRDLKPeNILl~~~g~iKL~DFGlak~  145 (321)
T cd05591         112 LHRHGVIYRDLKLDNILLDAEGHCKLADFGMCKE  145 (321)
T ss_pred             HHHCCEEECCCCCCCCCCCCCCCEEECCCCHHHH
T ss_conf             9859778676776553305788577413123222


No 180
>cd07865 STKc_CDK9 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9 subfamily. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participa
Probab=98.65  E-value=8.9e-08  Score=79.43  Aligned_cols=142  Identities=13%  Similarity=0.193  Sum_probs=81.5

Q ss_pred             HHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             867--666778888655550212888723687640310468877778899987532114685433469179999999887
Q gi|254780623|r  122 EFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT  199 (517)
Q Consensus       122 ~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  199 (517)
                      .++  +.|++||-|+||+|+-..  +|+.||||+.+-.                    ....            .+....
T Consensus        13 ~Y~~~~~IG~G~fg~V~~a~~~~--t~~~vAiK~i~~~--------------------~~~~------------~~~~~~   58 (310)
T cd07865          13 KYEKLAKIGQGTFGEVFKARHKK--TKQIVALKKVLME--------------------NEKE------------GFPITA   58 (310)
T ss_pred             CEEEEEEEECCCCCEEEEEEECC--CCCEEEEEEEECC--------------------CCCH------------HHHHHH
T ss_conf             87776697337284999999999--9979999998410--------------------0432------------668999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHC-------CCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             8886559999889872024467766430000-------102217833530024786324267733200225689999999
Q gi|254780623|r  200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKI-------DWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQ  272 (517)
Q Consensus       200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~v-------y~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~  272 (517)
                            .+|.+.+..++.    ..-+.+-.+       +..+-+.-.|||||++|--. +.  +....   ..+...-+.
T Consensus        59 ------~rEi~il~~l~H----~niv~~~~~~~~~~~~~~~~~~~~~lv~E~~~~~l~-~~--~~~~~---~~~~~~~i~  122 (310)
T cd07865          59 ------LREIKILQLLKH----ENVVNLIEICRTKATPYNRFKGSFYLVFEFCEHDLA-GL--LSNKN---VKFTLSEIK  122 (310)
T ss_pred             ------HHHHHHHHHCCC----CCCCEEEEEEEECCCCCCCCCCEEEEEEECCCCCHH-HH--HHHCC---CCCCHHHHH
T ss_conf             ------999999997479----981406889973364555668759999966899768-88--86346---898999999


Q ss_pred             HHHHHH-------HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             999989-------74486617878622898028953574340312169
Q gi|254780623|r  273 SFLLHT-------LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       273 ~~~~qi-------~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                      .+++|+       -..|+.|.|.-|.||+++.+|.+-+.|||+...++
T Consensus       123 ~i~~Qil~aL~yLH~~gIiHRDlKPeNILl~~~~~vKl~DFGla~~~~  170 (310)
T cd07865         123 KVMKQLLNGLYYIHRNKILHRDMKAANILITKDGILKLADFGLARAFS  170 (310)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCEEEECCCCCEECC
T ss_conf             999999999999987877516787899688788988982166441323


No 181
>cd05047 PTKc_Tie Catalytic Domain of Tie Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l
Probab=98.65  E-value=6.8e-07  Score=72.61  Aligned_cols=142  Identities=14%  Similarity=0.138  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67788886555502128887236876403104688777788999875321146854334691799999998878886559
Q gi|254780623|r  127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR  206 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~  206 (517)
                      |+.||-|+||+|+.+.++....||||+.+....+    +                                   .+-+|.
T Consensus         3 IG~G~fG~Vy~~~~~~~g~~~~vaiK~~~~~~~~----~-----------------------------------~~~~~~   43 (270)
T cd05047           3 IGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASK----D-----------------------------------DHRDFA   43 (270)
T ss_pred             CCCCCCCEEEEEEECCCCEEEEEEEEEECCCCCH----H-----------------------------------HHHHHH
T ss_conf             1117996899999938997999999997844482----6-----------------------------------899999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHH---------------HCCCHH---HHHH
Q ss_conf             9998898720244677664300001022178335300247863242677332---------------002256---8999
Q gi|254780623|r  207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRA---------------CGHDLE---RLSV  268 (517)
Q Consensus       207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~---------------~~~d~~---~la~  268 (517)
                      +|+..+.++.++ .  .-|.+=.++ +-...-.|||||++|-.+.+.-.-..               ...+.+   +++.
T Consensus        44 ~E~~~l~~l~~H-p--nIv~l~g~~-~~~~~~~lv~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  119 (270)
T cd05047          44 GELEVLCKLGHH-P--NIINLLGAC-EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAA  119 (270)
T ss_pred             HHHHHHHHCCCC-C--CEEEEEEEE-CCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCHHHHCCCCCCCCCHHHHHHHHH
T ss_conf             999999963489-9--888899898-529989999980799969999985465544620211146557789999999999


Q ss_pred             HHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC
Q ss_conf             99999999897448661787862289802895357434031216
Q gi|254780623|r  269 TLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL  312 (517)
Q Consensus       269 ~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l  312 (517)
                      .++.+ +.-+-..|+.|.|.-|.||+++.++.+-+-|||+....
T Consensus       120 ~ia~g-l~yLH~~~iiHRDlK~~NILl~~~~~~Kl~DFGla~~~  162 (270)
T cd05047         120 DVARG-MDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQ  162 (270)
T ss_pred             HHHHH-HHHHHCCCCCCCCCCHHEEEECCCCCEEEEECCCCCCC
T ss_conf             99999-99871099253767720289999997899566888678


No 182
>cd05060 PTKc_Syk_like Catalytic Domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi
Probab=98.64  E-value=2.7e-07  Score=75.76  Aligned_cols=140  Identities=17%  Similarity=0.136  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHHHEECCC-CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288-87236876403104688777788999875321146854334691799999998878886
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDIN-GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM  203 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~-~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El  203 (517)
                      +.|++||-|.||+|+.+..+ .+..||||+.++.-.....                                       -
T Consensus         1 ~~iG~G~fg~Vy~g~~~~~~~~~~~VAiK~~~~~~~~~~~---------------------------------------~   41 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGK---------------------------------------K   41 (257)
T ss_pred             CCCCCCCCCEEEEEEEECCCCEEEEEEEEEECHHHCHHHH---------------------------------------H
T ss_conf             9485588858998999868984899999998822186789---------------------------------------9


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCC---HHHHHHHHHH--HHHHHH
Q ss_conf             55999988987202446776643000010221783353002478632426773320022---5689999999--999989
Q gi|254780623|r  204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHD---LERLSVTLVQ--SFLLHT  278 (517)
Q Consensus       204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d---~~~la~~l~~--~~~~qi  278 (517)
                      .|.+|++.+.+++.-+    -|.+=.+..  ...-+|||||++|-++.+.-.- ....+   ...++..++.  .|+   
T Consensus        42 ~f~~E~~~l~~l~Hpn----Iv~~~g~~~--~~~~~lV~Ey~~~G~L~~~l~~-~~~~~~~~~~~~~~qia~gl~yL---  111 (257)
T cd05060          42 EFLREASVMAQLDHPC----IVRLIGVCK--GEPLMLVMELAPLGPLLKYLKK-RREIPVSDLKELAHQVAMGMAYL---  111 (257)
T ss_pred             HHHHHHHHHHHCCCCC----EEEEEEEEE--CCCEEEEEECCCCCCHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHH---
T ss_conf             9999999998679998----842641893--6936999986899999999986-79999999999999999999999---


Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             74486617878622898028953574340312169
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                      -..|+.|.|.-|-||+++.+|.+-+-|||+...+.
T Consensus       112 H~~~ivHrDlK~~NiLl~~~~~vKl~DFGls~~~~  146 (257)
T cd05060         112 ESKHFVHRDLAARNVLLVNRHQAKISDFGMSRALG  146 (257)
T ss_pred             HHCCEEECCCCCCCEEECCCCCEEEEECCCCEECC
T ss_conf             86995616567042578689978884140320247


No 183
>cd07880 STKc_p38gamma_MAPK12 The catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MA
Probab=98.64  E-value=8e-08  Score=79.78  Aligned_cols=145  Identities=18%  Similarity=0.240  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             666778888655550212888723687640310-4688777788999875321146854334691799999998878886
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPG-VRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM  203 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~-i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El  203 (517)
                      +.|++||-|+||+|+-+.  +|+.||||+.+.. ..+.                                 +.....   
T Consensus        21 ~~IG~G~fG~V~~a~d~~--t~~~vAiK~i~~~~~~~~---------------------------------~~~~~~---   62 (343)
T cd07880          21 KQVGSGAYGTVCSALDRR--TGAKVAIKKLYRPFQSEL---------------------------------FAKRAY---   62 (343)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHCCHH---------------------------------HHHHHH---
T ss_conf             797216274999999889--998999999873443869---------------------------------999999---


Q ss_pred             HHHHHHHHHHHHHCC-CCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCH---HHHHHHHHHHHHHHHH
Q ss_conf             559999889872024-467766430000102217833530024786324267733200225---6899999999999897
Q gi|254780623|r  204 DLRLEAAAFSEMAEN-TVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDL---ERLSVTLVQSFLLHTL  279 (517)
Q Consensus       204 D~~~Ea~n~~~~~~~-~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~---~~la~~l~~~~~~qi~  279 (517)
                         +|.+.+..++.. .-..-.+..+.-..+..+.-.+||||+ |..+.+...  ......   +.++..++.+ +.-+-
T Consensus        63 ---rEi~il~~l~h~nIv~l~~~f~~~~~~~~~~~~ylv~e~~-g~~L~~~~k--~~~l~e~~i~~i~~Qil~a-L~ylH  135 (343)
T cd07880          63 ---RELRLLKHMKHENVIGLLDVFTPDLSLDRFHDFYLVMPFM-GTDLGKLMK--HEKLSEDRIQFLVYQMLKG-LKYIH  135 (343)
T ss_pred             ---HHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEEEECC-CCCHHHHHH--CCCCCHHHHHHHHHHHHHH-HHHHH
T ss_conf             ---9999998668989561778983277545566079999468-867999986--4998999999999999999-99999


Q ss_pred             HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             44866178786228980289535743403121698
Q gi|254780623|r  280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      ..|+.|.|.-|.||+++.++.+-+.|||+....+.
T Consensus       136 ~~gIiHRDLKPeNILl~~~~~vKl~DFGla~~~~~  170 (343)
T cd07880         136 AAGIIHRDLKPGNLAVNEDCELKILDFGLARQTDS  170 (343)
T ss_pred             HCCCCCCCCCHHHEEECCCCCEEEEECCCCCCCCC
T ss_conf             78964156743656886778579734567744511


No 184
>cd07842 STKc_CDK8_like The catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with 
Probab=98.64  E-value=1e-07  Score=79.03  Aligned_cols=147  Identities=15%  Similarity=0.214  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.|+-|.||+|+.++..+|+.||||+.+......-.                               +.....+|++
T Consensus         6 ~~lG~G~fg~V~~~~~~~~~~~~~~AiK~i~~~~~~~~~-------------------------------~~~~~~~Ei~   54 (315)
T cd07842           6 GCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTG-------------------------------ISQSACREIA   54 (315)
T ss_pred             EEEECCCCEEEEEEEEEECCCCCEEEEEEECCCCCCHHH-------------------------------HHHHHHHHHH
T ss_conf             498325681989999846899949999998421010046-------------------------------6899999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC-EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH----
Q ss_conf             5999988987202446776643000010221783-35300247863242677332002256899999999999897----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD-VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL----  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~-VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~----  279 (517)
                            .++.++    ...-|.+-.+|.+-.+.. .|||||+++--.+-+.....  .....+....+..+++|++    
T Consensus        55 ------il~~l~----hpnIv~l~~~~~~~~~~~~~lv~E~~~~~l~~~i~~~~~--~~~~~~~~~~i~~i~~Qll~aL~  122 (315)
T cd07842          55 ------LLRELK----HENVVSLVEVFLEHADKSVYLLFDYAEHDLWQIIKFHRQ--AKRVSIPPSMVKSLLWQILNGVH  122 (315)
T ss_pred             ------HHHHCC----CCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHH--HCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             ------998669----988641778997089878999991379987999998666--22788999999999999999999


Q ss_pred             ---HCCEECCCCCCCEEEEEC----CCCEEEEECCHHEECCH
Q ss_conf             ---448661787862289802----89535743403121698
Q gi|254780623|r  280 ---RDGFFHADLHPGNLFVDS----KGYIVAVDMGITGRLSK  314 (517)
Q Consensus       280 ---~~GfFHaDPHpGNi~v~~----dg~i~~lDfG~vg~l~~  314 (517)
                         ..|+.|.|.-|.||++..    .|.+-+.|||....+..
T Consensus       123 yLH~~~IiHrDlKPeNILl~~~~~~~~~iKl~DFG~a~~~~~  164 (315)
T cd07842         123 YLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNA  164 (315)
T ss_pred             HHHHCCEEECCCCCCCEEEECCCCCCCCEEECCCCEEEECCC
T ss_conf             999889163337610079832567778788668730366157


No 185
>cd07864 STKc_CDK12 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12 subfamily. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. C
Probab=98.64  E-value=4.8e-08  Score=81.52  Aligned_cols=140  Identities=21%  Similarity=0.256  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.|+-|+||+|.-++  +|+.||||+.+-.-..    +                            .+....     
T Consensus        13 ~~lG~G~fg~V~~a~~~~--t~~~vAiK~i~~~~~~----~----------------------------~~~~~~-----   53 (302)
T cd07864          13 GQIGEGTYGQVYKARDKD--TGELVALKKVRLDNEK----E----------------------------GFPITA-----   53 (302)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEECCCCC----H----------------------------HHHHHH-----
T ss_conf             898526381999999889--9979999999501022----2----------------------------448999-----


Q ss_pred             HHHHHHHHHHHH--------CCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             599998898720--------244677664300001022178335300247863242677332002256899999999999
Q gi|254780623|r  205 LRLEAAAFSEMA--------ENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLL  276 (517)
Q Consensus       205 ~~~Ea~n~~~~~--------~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~  276 (517)
                       .+|.+.+..+.        +.+.+.....   .+.+-.+.-.+||||++|--...   +...   ...+.+.-+..|++
T Consensus        54 -~~Ei~il~~l~h~niv~~~~~~~~~~~~~---~~~~~~~~~~iv~E~~~~~l~~~---l~~~---~~~~~e~~~~~~~~  123 (302)
T cd07864          54 -VREIKILRQLNHRSIVNLKEIVTDKQDAL---DFKKDKGAFYLVFEYMDHDLMGL---LESG---LVHFSEDHIKSFMK  123 (302)
T ss_pred             -HHHHHHHHHHCCCCCCCEEEEEECCCCCC---CCCCCCCEEEEEEECCCCCHHHH---HHHC---CCCCCHHHHHHHHH
T ss_conf             -99999999706888330467883055432---20036875999997999966999---9846---78989999999999


Q ss_pred             HHH-------HCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             897-------4486617878622898028953574340312169
Q gi|254780623|r  277 HTL-------RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       277 qi~-------~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                      |++       ..|+.|.|.-|.||+++.+|.+-+.|||+...+.
T Consensus       124 Qil~gL~yLH~~giiHRDlKPeNILi~~~~~vKl~DFG~a~~~~  167 (302)
T cd07864         124 QLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFGLARLYN  167 (302)
T ss_pred             HHHHHHHHHHHCCCEECCCCHHHEEECCCCCEEEEECCCCEECC
T ss_conf             99999999986994604587698699899988997568751046


No 186
>cd05044 PTKc_c-ros Catalytic Domain of the Protein Tyrosine Kinase, C-ros. Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male
Probab=98.64  E-value=1.2e-07  Score=78.32  Aligned_cols=140  Identities=21%  Similarity=0.312  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHEEC----CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             66778888655550212----88872368764031046887777889998753211468543346917999999988788
Q gi|254780623|r  126 PIAAASIAQVHPAVVHD----INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKM  201 (517)
Q Consensus       126 PlasASiaQVh~A~l~d----~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~  201 (517)
                      -|++||.|+||+|+.++    ++++++||||+.+++..+.                                       +
T Consensus         2 ~iG~G~fG~Vy~~~~~~~~~~~~~~~~VAvK~l~~~~~~~---------------------------------------~   42 (270)
T cd05044           2 LLGSGAFGEVYEGTAVDILGPGEGEIRVAVKTLRKGATDQ---------------------------------------E   42 (270)
T ss_pred             CCEECCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCHH---------------------------------------H
T ss_conf             6403888589968984776677556699999988668979---------------------------------------9


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCC-CCHHCCCHHCCCCEEEEECCCCCCCCHHHH-HHH-----HCCCHHH---HHHHHH
Q ss_conf             865599998898720244677664-300001022178335300247863242677-332-----0022568---999999
Q gi|254780623|r  202 EMDLRLEAAAFSEMAENTVKDQGF-RVPKIDWNRTERDVITMEWIDGVKISDTEK-LRA-----CGHDLER---LSVTLV  271 (517)
Q Consensus       202 ElD~~~Ea~n~~~~~~~~~~~~~v-~vP~vy~~~st~~VLvmE~i~G~~i~d~~~-l~~-----~~~d~~~---la~~l~  271 (517)
                      +-+|.+|++-+.+++.     |.| .+=.++. -...-.|||||++|-.+.+.-. ...     .......   ++..++
T Consensus        43 ~~~~~~E~~il~~l~H-----pnIv~~~g~~~-~~~~~~lvmE~~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia  116 (270)
T cd05044          43 KKEFLKEAHLMSNFNH-----PNILKLLGVCL-LNEPQYLILELMEGGDLLSYLRGARVTRFGPPLLTLSELLDICLDVA  116 (270)
T ss_pred             HHHHHHHHHHHHHCCC-----CCCCEEEEEEE-ECCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             9999999999985899-----89881989999-89988999984689869999863133557776679999999999999


Q ss_pred             H--HHHHHHHHCCEECCCCCCCEEEEECCCC------EEEEECCHHEECC
Q ss_conf             9--9999897448661787862289802895------3574340312169
Q gi|254780623|r  272 Q--SFLLHTLRDGFFHADLHPGNLFVDSKGY------IVAVDMGITGRLS  313 (517)
Q Consensus       272 ~--~~~~qi~~~GfFHaDPHpGNi~v~~dg~------i~~lDfG~vg~l~  313 (517)
                      .  .|+   -..|+.|.|.-|.||+++.+|.      +-+.|||+...+.
T Consensus       117 ~gl~yL---H~~~ivHrDlKp~NILl~~~~~~~~~~~vKl~DFGla~~~~  163 (270)
T cd05044         117 KGCVYL---ERMHFIHRDLAARNCLVSEKTYSDADRVVKIGDFGLARDIY  163 (270)
T ss_pred             HHHHHH---HHCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCC
T ss_conf             999999---97895167777441797357777777727981447733446


No 187
>cd07840 STKc_CDK9_like The catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RN
Probab=98.64  E-value=7.7e-08  Score=79.91  Aligned_cols=140  Identities=17%  Similarity=0.279  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|++|+-|+||+|.-+  .+|+.||||+.+..-..                                +++.....    
T Consensus         5 ~~iG~G~fg~V~~~~~~--~t~~~vAiK~i~~~~~~--------------------------------~~~~~~~~----   46 (287)
T cd07840           5 AQIGEGTYGQVYKARNK--KTGELVALKKIRMENEK--------------------------------EGFPITAI----   46 (287)
T ss_pred             EEEECCCCEEEEEEEEC--CCCCEEEEEEEECCCCC--------------------------------HHHHHHHH----
T ss_conf             99732869299999988--99989999998300154--------------------------------06689999----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHH-CCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-----
Q ss_conf             599998898720244677664300001022-17833530024786324267733200225689999999999989-----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNR-TERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT-----  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~-st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi-----  278 (517)
                        +|.+.++.+..    ..-+.+-.++.+- .+.=.+||||++| .+...  +...+.   .+.+.-+..|++|+     
T Consensus        47 --~Ei~il~~l~h----pnIi~~~~~~~~~~~~~~~iv~E~~~~-dL~~~--l~~~~~---~~~~~~~~~~~~qll~al~  114 (287)
T cd07840          47 --REIKLLQKLRH----PNIVRLKEIVTSKGKGSIYMVFEYMDH-DLTGL--LDSPEV---KFTESQIKCYMKQLLEGLQ  114 (287)
T ss_pred             --HHHHHHHHCCC----CCCCCEEEEEEECCCCEEEEEEECCCC-CHHHH--HHHCCC---CCCHHHHHHHHHHHHHHHH
T ss_conf             --99999997799----897636789996699879999926898-78999--982689---9899999999999999999


Q ss_pred             --HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             --744866178786228980289535743403121698
Q gi|254780623|r  279 --LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       279 --~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                        -..|+.|.|.-|.||+++.+|.+-+.|||....++.
T Consensus       115 ylH~~~iiHRDlKp~NILl~~~~~vKl~DFG~a~~~~~  152 (287)
T cd07840         115 YLHSNGILHRDIKGSNILINNDGVLKIADFGLARPYTK  152 (287)
T ss_pred             HHHHCCEEEEECCHHHEEECCCCCEEEEECCCCEECCC
T ss_conf             99879977533677884788999989836798736467


No 188
>cd05599 STKc_NDR_like STKc_NDR_like: Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplication. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. This su
Probab=98.64  E-value=7.8e-08  Score=79.90  Aligned_cols=144  Identities=21%  Similarity=0.316  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.||-|.||+|+-+.  +|+.||||+.+..-                +.+               .+-...+.    
T Consensus         7 k~lG~G~fg~V~~~~~~~--t~~~~AiK~i~k~~----------------~~~---------------~~~~~~~~----   49 (364)
T cd05599           7 KVIGRGAFGEVRLVQKKD--TGHIYAMKKLRKSE----------------MLE---------------KEQVAHVR----   49 (364)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHH----------------CCC---------------HHHHHHHH----
T ss_conf             795228784999999889--99899999984688----------------147---------------78999999----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH-----
Q ss_conf             5999988987202446776643000010221783--353002478632426773320022568999999999998-----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH-----  277 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q-----  277 (517)
                        .|..-+...     +.|.  |.+.|..+.+++  .|||||++|-.+.+.  +...+.    +.+..+..|+.|     
T Consensus        50 --~E~~il~~~-----~hp~--Iv~l~~~f~~~~~~ylvmEy~~gGdL~~~--l~~~~~----l~e~~~~~~~~qi~~aL  114 (364)
T cd05599          50 --AERDILAEA-----DNPW--VVKLYYSFQDENYLYLIMEYLPGGDMMTL--LMKKDT----FTEEETRFYIAETILAI  114 (364)
T ss_pred             --HHHHHHHHC-----CCCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCC----CCHHHHHHHHHHHHHHH
T ss_conf             --999999877-----9998--89399999989999999837889728999--986599----99999999999999999


Q ss_pred             --HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHH
Q ss_conf             --9744866178786228980289535743403121698999999
Q gi|254780623|r  278 --TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFL  320 (517)
Q Consensus       278 --i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l  320 (517)
                        +-..|+.|-|.-|.||+++.+|.+-+.|||+...+.......+
T Consensus       115 ~ylH~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~~  159 (364)
T cd05599         115 DSIHKLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEF  159 (364)
T ss_pred             HHHHHCCEEECCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCH
T ss_conf             999757654000442337997999889972677723333455201


No 189
>cd05058 PTKc_Met_Ron Catalytic Domain of the Protein Tyrosine Kinases, Met and Ron. Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca
Probab=98.64  E-value=6.1e-07  Score=72.96  Aligned_cols=142  Identities=13%  Similarity=0.168  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHHEECCC-CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             677888865555021288-8723687640310468877778899987532114685433469179999999887888655
Q gi|254780623|r  127 IAAASIAQVHPAVVHDIN-GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL  205 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~-~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~  205 (517)
                      |+.||.|.||+|++.+.+ .+..||||.....                            -+. +          ..-+|
T Consensus         3 iG~G~fG~Vykg~~~~~~~~~~~vAvK~l~~~----------------------------~~~-~----------~~~~f   43 (262)
T cd05058           3 IGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRI----------------------------TDL-E----------EVEQF   43 (262)
T ss_pred             EEECCCEEEEEEEEECCCCEEEEEEEEEECCC----------------------------CCH-H----------HHHHH
T ss_conf             01189829998999789985899999997876----------------------------797-8----------99999


Q ss_pred             HHHHHHHHHHHCCCCCCCCC-CCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCC--CHH---HHHHHHHHHHHHHHH
Q ss_conf             99998898720244677664-300001022178335300247863242677332002--256---899999999999897
Q gi|254780623|r  206 RLEAAAFSEMAENTVKDQGF-RVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGH--DLE---RLSVTLVQSFLLHTL  279 (517)
Q Consensus       206 ~~Ea~n~~~~~~~~~~~~~v-~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~--d~~---~la~~l~~~~~~qi~  279 (517)
                      .+|+..+.+++.     |.| .+=.+..+-.+...+||||++|-.+.+.-  +..+.  ..+   .++..++.+ +.-+-
T Consensus        44 ~~E~~~l~~l~H-----pNIv~~~g~~~~~~~~~~iv~e~~~~GsL~~~l--~~~~~~~~~~~~~~i~~qia~g-l~yLH  115 (262)
T cd05058          44 LKEGIIMKDFSH-----PNVLSLLGICLPSEGSPLVVLPYMKHGDLRNFI--RSETHNPTVKDLIGFGLQVAKG-MEYLA  115 (262)
T ss_pred             HHHHHHHHHCCC-----CCCCCEEEEEECCCCCEEEEEECCCCCCHHHHH--HCCCCCCCHHHHHHHHHHHHHH-HHHHC
T ss_conf             999999996799-----993435689985899569999857999799997--5346798899999999999999-99980


Q ss_pred             HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             448661787862289802895357434031216989
Q gi|254780623|r  280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      ..|+.|.|.-|.||+++.++.+-+-|||+...+.+.
T Consensus       116 ~~~ivHrDlK~~NiLld~~~~~Kl~DFGla~~~~~~  151 (262)
T cd05058         116 SKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDK  151 (262)
T ss_pred             CCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCC
T ss_conf             199475757824088889996899764655146566


No 190
>cd07833 STKc_CDKL The catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learn
Probab=98.64  E-value=5.1e-08  Score=81.31  Aligned_cols=142  Identities=14%  Similarity=0.201  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-|+.|+-|+||+|+-+.  +|+.||||+.+..-.                           +     ....+.+     
T Consensus         7 ~~iG~G~fg~V~~~~~~~--~~~~vAiK~~~~~~~---------------------------~-----~~~~~~~-----   47 (288)
T cd07833           7 GVVGEGAYGVVLKCRNKA--TGEIVAIKKFKESED---------------------------D-----EDVKKTA-----   47 (288)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCC---------------------------C-----HHHHHHH-----
T ss_conf             397416086999999889--998999999872337---------------------------8-----8999999-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCH---HHHHHHHHHHHHHHHH
Q ss_conf             599998898720244677664300001022178--33530024786324267733200225---6899999999999897
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDL---ERLSVTLVQSFLLHTL  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~---~~la~~l~~~~~~qi~  279 (517)
                       .+|...+..+.     .|.  |-+.|.-+.++  -.|||||++|-.+..+..- ..+.+.   +.++..++.+. .-+-
T Consensus        48 -~~Ei~il~~l~-----Hpn--Iv~~~~~f~~~~~~~lVmE~~~~~l~~~~~~~-~~~l~~~~i~~i~~qll~aL-~yLH  117 (288)
T cd07833          48 -LREVKVLRQLR-----HEN--IVNLKEAFRRKGRLYLVFEYVERTLLELLEAS-PGGLPPDAVRSYIWQLLQAI-AYCH  117 (288)
T ss_pred             -HHHHHHHHHCC-----CCC--EEEEEEEEEECCEEEEEEECCCCCHHHHHHHC-CCCCCHHHHHHHHHHHHHHH-HHHH
T ss_conf             -99999998679-----999--85598998389999999937799759999976-79989999999999999999-9999


Q ss_pred             HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             448661787862289802895357434031216989
Q gi|254780623|r  280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      ..|+.|.|..|.||+++++|.+-+.|||....++..
T Consensus       118 ~~~iiHRDiKpeNILl~~~~~iKl~DFG~a~~~~~~  153 (288)
T cd07833         118 SHNIIHRDIKPENILVSESGVLKLCDFGFARALRAR  153 (288)
T ss_pred             HCCCCCCCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf             888461667788878888998898005554002468


No 191
>cd05602 STKc_SGK1 STKc_SGK1: Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is as
Probab=98.63  E-value=1.7e-07  Score=77.19  Aligned_cols=137  Identities=20%  Similarity=0.199  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67788886555502128887236876403104688777788999875321146854334691799999998878886559
Q gi|254780623|r  127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR  206 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~  206 (517)
                      |+.||-|+||+|+-+.  +|+.||+|+.+...-                .          +-     .-...+.      
T Consensus         3 LG~G~fG~V~la~~~~--t~~~~AiK~i~k~~~----------------~----------~~-----~~~~~~~------   43 (325)
T cd05602           3 IGKGSFGKVLLARHKS--DEKFYAVKVLQKKAI----------------L----------KK-----KEEKHIM------   43 (325)
T ss_pred             EEECCCEEEEEEEECC--CCCEEEEEEEEHHHC----------------C----------CH-----HHHHHHH------
T ss_conf             6318495999999889--997999999837880----------------3----------76-----8999999------


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHH----HHHHHHHHHHHHHHHH
Q ss_conf             9998898720244677664300001022178--335300247863242677332002256----8999999999998974
Q gi|254780623|r  207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLE----RLSVTLVQSFLLHTLR  280 (517)
Q Consensus       207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~----~la~~l~~~~~~qi~~  280 (517)
                      .|.+-+   .++. ++|.  |.+.|..+.+.  -.+||||++|-.+.+.  +...+.-..    .++..++.+ +.-+-.
T Consensus        44 ~E~~il---l~~l-~hp~--Iv~l~~~f~~~~~lylvmEy~~gGdL~~~--l~~~~~~~e~~a~~~~~qi~~a-L~yLH~  114 (325)
T cd05602          44 SERNVL---LKNV-KHPF--LVGLHFSFQTTDKLYFVLDYINGGELFYH--LQRERCFLEPRARFYAAEIASA-LGYLHS  114 (325)
T ss_pred             HHHHHH---HHHC-CCCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHHH
T ss_conf             999999---9868-9998--89599999989999999957899868999--9753899999999999999999-999998


Q ss_pred             CCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             4866178786228980289535743403121
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                      .|+.|-|.-|.||+++.+|.+.+.|||+...
T Consensus       115 ~~IiHRDLKPeNILld~~g~ikL~DFGlak~  145 (325)
T cd05602         115 LNIVYRDLKPENILLDSQGHIVLTDFGLCKE  145 (325)
T ss_pred             CCCEECCCCCCCCCCCCCCCEEEEECHHHHH
T ss_conf             7965323576465637899888710335565


No 192
>cd05624 STKc_MRCK_beta STKc_MRCK_beta: Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.
Probab=98.63  E-value=3.2e-08  Score=82.84  Aligned_cols=141  Identities=16%  Similarity=0.218  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.||-|.||+|+-++  +|+.||+||.+..-                ....           .    -...+.+|  
T Consensus         7 k~LG~G~fG~V~~a~~~~--t~~~~AiKvi~k~~----------------~~~~-----------~----~~~~~~~E--   51 (331)
T cd05624           7 KVIGRGAFGEVAVVKMKH--TERIYAMKILNKWE----------------MLKR-----------A----ETACFREE--   51 (331)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECHHH----------------HCCH-----------H----HHHHHHHH--
T ss_conf             896327580999999989--99899999984789----------------1378-----------8----99999999--


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHH-HCCCHHHH----HHHHHHHHHHH
Q ss_conf             599998898720244677664300001022178--335300247863242677332-00225689----99999999998
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRA-CGHDLERL----SVTLVQSFLLH  277 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~-~~~d~~~l----a~~l~~~~~~q  277 (517)
                          ..-+...     +.+.  |.+.|..+.++  -.+||||+.|-.+.+.  +.. .+.-....    +..++.+ +.-
T Consensus        52 ----~~il~~~-----~h~~--Iv~l~~~f~~~~~~ylvmEy~~gGdL~~~--l~~~~~~l~e~~~~~~~~qil~a-L~y  117 (331)
T cd05624          52 ----RNVLVNG-----DCQW--ITTLHYAFQDENYLYLVMDYYVGGDLLTL--LSKFEDRLPEDMARFYIAEMVLA-IHS  117 (331)
T ss_pred             ----HHHHHHC-----CCCC--EEEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCCHHHHHHHHHHHHHH-HHH
T ss_conf             ----9999857-----9996--71899999989999999961579889999--98607889899999999999999-999


Q ss_pred             HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             9744866178786228980289535743403121698
Q gi|254780623|r  278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      +-..|+.|-|.-|.||+++.+|.+-+.|||....+..
T Consensus       118 lH~~~IiHRDLKPeNILl~~~g~iKL~DFG~a~~~~~  154 (331)
T cd05624         118 IHQLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQ  154 (331)
T ss_pred             HHHCCEEECCCCCCCCCCCCCCCEEEECCHHHEEECC
T ss_conf             8636688422366563325899788731413203246


No 193
>cd05084 PTKc_Fes Catalytic Domain of the Protein Tyrosine Kinase, Fes. Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular 
Probab=98.63  E-value=2e-07  Score=76.71  Aligned_cols=138  Identities=18%  Similarity=0.201  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             66778888655550212888723687640310468877778899987532114685433469179999999887888655
Q gi|254780623|r  126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL  205 (517)
Q Consensus       126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~  205 (517)
                      =|+.|+-|.||+|+.+.  +|+.||||+.+-...    .                             +.      +-+|
T Consensus         2 ~iG~G~fg~Vy~~~~~~--~~~~vAiK~~~~~~~----~-----------------------------~~------~~~~   40 (252)
T cd05084           2 RIGRGNFGEVFSGRLRA--DNTPVAVKSCRETLP----P-----------------------------EL------KAKF   40 (252)
T ss_pred             CCCCCCCCEEEEEEECC--CCEEEEEEEECCCCC----H-----------------------------HH------HHHH
T ss_conf             07458882899999979--996999999881169----8-----------------------------89------9999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHH---HHHHHHHHHHHHHHHH
Q ss_conf             99998898720244677664300001022178--335300247863242677332002256---8999999999998974
Q gi|254780623|r  206 RLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLE---RLSVTLVQSFLLHTLR  280 (517)
Q Consensus       206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~l~~~~~~qi~~  280 (517)
                      .+|++-+.+++.     |.|  =+.|.-.+++  -.|||||++|-.+.+.-.-+....+..   .++..++.+ +.-+-.
T Consensus        41 ~~E~~il~~l~H-----pnI--v~l~g~~~~~~~~~lv~Ey~~~G~L~~~l~~~~~~l~~~~~~~i~~~ia~g-l~yLH~  112 (252)
T cd05084          41 LMEARILKQYSH-----PNI--VKLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGPRLKVKELIRMAENAAAG-MEYLES  112 (252)
T ss_pred             HHHHHHHHHCCC-----CCC--CCEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHHH
T ss_conf             999999985799-----899--765479988998999997899992899998428999999999999999999-999987


Q ss_pred             CCEECCCCCCCEEEEECCCCEEEEECCHHEEC
Q ss_conf             48661787862289802895357434031216
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRL  312 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l  312 (517)
                      .|+.|.|.-|.||+++.+|.+-+.|||+....
T Consensus       113 ~~ivHrDlKp~NiLl~~~~~~kl~DFGla~~~  144 (252)
T cd05084         113 KHCIHRDLAARNCLVTEKNVLKISDFGMSREE  144 (252)
T ss_pred             CCCCCCCCCHHHEEECCCCEEEEEECCCCEEC
T ss_conf             89446873654289879992999555256056


No 194
>cd06634 STKc_TAO2 Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4
Probab=98.63  E-value=1.5e-07  Score=77.74  Aligned_cols=152  Identities=16%  Similarity=0.140  Sum_probs=91.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf             89999998676667788886555502128887236876403104688777788999875321146854334691799999
Q gi|254780623|r  115 PIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRA  194 (517)
Q Consensus       115 ~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e  194 (517)
                      +++..|... +.|++||-|.||+|+-+.  +|+.||||+....-.                          .+ .+    
T Consensus        12 dp~~~y~~l-~~IG~G~fG~Vy~a~~~~--~~~~vAiK~i~~~~~--------------------------~~-~~----   57 (308)
T cd06634          12 DPEKLFSDL-REIGHGSFGAVYFARDVR--NSEVVAIKKMSYSGK--------------------------QS-NE----   57 (308)
T ss_pred             CHHHHCEEE-EEECCCCCEEEEEEEECC--CCCEEEEEEECHHHC--------------------------CC-HH----
T ss_conf             957717420-797138881999999889--995999999864542--------------------------47-69----


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHH
Q ss_conf             9988788865599998898720244677664300001022178--3353002478632426773320022568---9999
Q gi|254780623|r  195 LEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLER---LSVT  269 (517)
Q Consensus       195 ~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~  269 (517)
                            ..-++.+|++.+.+++.     |.|  -+.|.-+.++  -.|||||+.|-..+-.. ......+...   ++..
T Consensus        58 ------~~~~~~~Ei~il~~l~H-----pnI--V~~~~~~~~~~~~~lVmEy~~G~~~~ll~-~~~~~l~e~~~~~i~~q  123 (308)
T cd06634          58 ------KWQDIIKEVRFLQKLRH-----PNT--IQYRGCYLREHTAWLVMEYCLGSASDLLE-VHKKPLQEVEIAAVTHG  123 (308)
T ss_pred             ------HHHHHHHHHHHHHHCCC-----CCE--EEEEEEEEECCEEEEEEEECCCCHHHHHH-HHCCCCCHHHHHHHHHH
T ss_conf             ------99999999999997789-----998--46987883288679999924897488999-70589999999999999


Q ss_pred             HHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             9999999897448661787862289802895357434031216989
Q gi|254780623|r  270 LVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       270 l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      ++.+ +.-+-..|+.|-|.-|.||+++.+|.+-+.|||+...+.+.
T Consensus       124 il~g-L~yLH~~~IIHRDLKP~NILl~~~g~vKl~DFG~A~~~~~~  168 (308)
T cd06634         124 ALQG-LAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA  168 (308)
T ss_pred             HHHH-HHHHHHCCCCCCCCCCCCEEECCCCCEEEEECCCCEECCCC
T ss_conf             9999-99999888634667622079989998999845676344778


No 195
>cd05615 STKc_cPKC_alpha STKc_cPKC_alpha: Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with ce
Probab=98.63  E-value=4e-07  Score=74.41  Aligned_cols=139  Identities=19%  Similarity=0.220  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|++||-|+||+|+-+.  +|+.||+|+.+....                .    .      - .   +.. ..     
T Consensus         6 ~~LG~G~fG~V~~a~~~~--t~~~~AiK~i~k~~~----------------~----~------~-~---~~~-~~-----   47 (323)
T cd05615           6 MVLGKGSFGKVMLAERKG--TDELYAIKILKKDVV----------------I----Q------D-D---DVE-CT-----   47 (323)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHC----------------C----C------H-H---HHH-HH-----
T ss_conf             795328880999999999--998999999857885----------------3----8------5-7---899-99-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCC-C---HHHHHHHHHHHHHHHH
Q ss_conf             599998898720244677664300001022178--335300247863242677332002-2---5689999999999989
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGH-D---LERLSVTLVQSFLLHT  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~-d---~~~la~~l~~~~~~qi  278 (517)
                       ..|.+.+....    ..+.  |.+.|.-+.+.  -.+||||++|-.+.+.  +...+. +   ...++..++.+ +.-+
T Consensus        48 -~~E~~il~~~~----~~p~--Iv~l~~~f~~~~~~ylvmEy~~gGdL~~~--l~~~~~~~e~~~~~~~~qi~~a-L~yL  117 (323)
T cd05615          48 -MVEKRVLALQD----KPPF--LTQLHSCFQTVDRLYFVMEYVNGGDLMYH--IQQVGKFKEPQAVFYAAEISVG-LFFL  117 (323)
T ss_pred             -HHHHHHHHHCC----CCCC--EEEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHH
T ss_conf             -99999999705----9995--84899999989999999976899827899--9871899999999999999999-9999


Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             744866178786228980289535743403121
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                      -..|+.|-|.-|.||+++.+|.+-+.|||++..
T Consensus       118 H~~~IiHRDLKPeNILld~~g~iKL~DFGlak~  150 (323)
T cd05615         118 HRRGIIYRDLKLDNVMLDSEGHIKIADFGMCKE  150 (323)
T ss_pred             HHCCCEECCCCCCCEEECCCCCEEEEEHHHHHH
T ss_conf             988946466774311387899889854466453


No 196
>cd05070 PTKc_Fyn_Yrk Catalytic Domain of the Protein Tyrosine Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r
Probab=98.63  E-value=6.3e-08  Score=80.59  Aligned_cols=143  Identities=17%  Similarity=0.210  Sum_probs=91.8

Q ss_pred             HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             9867--66677888865555021288872368764031046887777889998753211468543346917999999988
Q gi|254780623|r  121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV  198 (517)
Q Consensus       121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  198 (517)
                      +.|+  +.|++||-|.||+|+++.   +.+||||+.+++-.+                           .    +     
T Consensus         6 ~~~~~~~~IG~G~fG~Vy~g~~~~---~~~VAiK~l~~~~~~---------------------------~----~-----   46 (260)
T cd05070           6 ESLQLIKKLGNGQFGEVWMGTWNG---NTKVAVKTLKPGTMS---------------------------P----E-----   46 (260)
T ss_pred             HHEEEEEEEECCCCCEEEEEEECC---CCEEEEEEECCCCCC---------------------------H----H-----
T ss_conf             998974798218885899999999---999999998836799---------------------------7----9-----


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC-CCEEEEECCCCCCCCHHHHH-HHHCCCHH---HHHHHHHHH
Q ss_conf             78886559999889872024467766430000102217-83353002478632426773-32002256---899999999
Q gi|254780623|r  199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE-RDVITMEWIDGVKISDTEKL-RACGHDLE---RLSVTLVQS  273 (517)
Q Consensus       199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st-~~VLvmE~i~G~~i~d~~~l-~~~~~d~~---~la~~l~~~  273 (517)
                           +|.+|++-+.+++..+    -|   +.|.-++. +-.++|||++|-.+.+.-.- ........   .++..++.+
T Consensus        47 -----~f~~E~~il~~l~H~n----Iv---~~~g~~~~~~~~lv~Ey~~~G~L~~~l~~~~~~~~~~~~~~~i~~qia~g  114 (260)
T cd05070          47 -----SFLEEAQIMKKLRHDK----LV---QLYAVVSEEPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAG  114 (260)
T ss_pred             -----HHHHHHHHHHHCCCCC----CC---EEEEEEECCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             -----9999999998689989----89---49999936975999981799989999862888879999999999999999


Q ss_pred             HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             999897448661787862289802895357434031216989
Q gi|254780623|r  274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                       +.-+-..|+.|.|.-|.||+++.++.+-+.|||+...++..
T Consensus       115 -L~yLH~~~iiHrDlKp~NiLl~~~~~~KL~DFGla~~~~~~  155 (260)
T cd05070         115 -MAYIERMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDN  155 (260)
T ss_pred             -HHHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCEECCCC
T ss_conf             -99985589234504617288878997898565867186789


No 197
>cd07831 STKc_MOK The catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase subfamily. Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and different
Probab=98.63  E-value=8.3e-08  Score=79.66  Aligned_cols=138  Identities=16%  Similarity=0.300  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-|+.||-|.||+|+-..  +|+.||||+.+.....                                       ..+..
T Consensus         5 ~~iG~G~fg~V~~~~~~~--~~~~vAiK~i~~~~~~---------------------------------------~~~~~   43 (282)
T cd07831           5 GKIGEGTFSEVLKAQSRK--TGKYYAIKCMKKHFKS---------------------------------------LEQVN   43 (282)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCCC---------------------------------------HHHHH
T ss_conf             597307180999999889--9989999998800288---------------------------------------88999


Q ss_pred             HHHHHHHHHHHHCCCCCCCC-CCCHHCCCHHCCC-CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH----
Q ss_conf             59999889872024467766-4300001022178-33530024786324267733200225689999999999989----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQG-FRVPKIDWNRTER-DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT----  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~st~-~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi----  278 (517)
                      ..+|...+.++.    +.|. |.+=.++.+-.+. -++||||++|- +-+  .+....   ..+.+..+..|+.|+    
T Consensus        44 ~~~Ei~~l~~l~----~hpnIv~~~~~~~~~~~~~~~lv~E~~~~~-l~~--~l~~~~---~~l~e~~~~~~~~Qil~al  113 (282)
T cd07831          44 NLREIQAMRRLS----PHPNIIRLIEVLFDRKTGRLALVFELMDMN-LYE--LIKGRK---RPLPEKRVKNYMYQLLKSL  113 (282)
T ss_pred             HHHHHHHHHHCC----CCCCEEEEEEEEEECCCCEEEEEEECCCHH-HHH--HHHHCC---CCCCHHHHHHHHHHHHHHH
T ss_conf             999999998537----999984799999967898799999477278-999--999669---9999999999999999999


Q ss_pred             ---HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             ---744866178786228980289535743403121698
Q gi|254780623|r  279 ---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       279 ---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                         -..|+.|-|.-|.||+++ ++.+.+.|||.+..+..
T Consensus       114 ~~LH~~~iiHRDiKp~NILl~-~~~~Kl~DFG~a~~~~~  151 (282)
T cd07831         114 DHMHRNGIFHRDIKPENILIK-DDILKLADFGSCRGIYS  151 (282)
T ss_pred             HHHHHCCEECCCCCCCEEEEE-CCEEEEEECCCCEECCC
T ss_conf             999989906130540139970-89089943364400357


No 198
>cd06636 STKc_MAP4K4_6 Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal e
Probab=98.63  E-value=1.2e-07  Score=78.49  Aligned_cols=146  Identities=16%  Similarity=0.233  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.||-|+||+|+-..  +|+.||||+.+..=.     +                              ...      
T Consensus        22 ~~IG~G~fg~Vy~a~~~~--tg~~~AiK~i~~~~~-----~------------------------------~~~------   58 (282)
T cd06636          22 EVVGNGTYGQVYKGRHVK--TGQLAAIKVMDVTED-----E------------------------------EEE------   58 (282)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCC-----H------------------------------HHH------
T ss_conf             898328582999999989--997999999814406-----1------------------------------999------


Q ss_pred             HHHHHHHHHHHHC--CCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHH-HHHCCCH---HHHHHHHHHHHHHHH
Q ss_conf             5999988987202--446776643000010221783353002478632426773-3200225---689999999999989
Q gi|254780623|r  205 LRLEAAAFSEMAE--NTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKL-RACGHDL---ERLSVTLVQSFLLHT  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~--~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l-~~~~~d~---~~la~~l~~~~~~qi  278 (517)
                      +..|.+.+.++..  |....-.+.+.+-....-..=.|||||++|-.+.+.-.. +.....-   ..++..++.+ +.-+
T Consensus        59 ~~~E~~~l~~~~~h~niv~~~~~~~~~~~~~~~~~l~lvmE~~~~g~L~~~l~~~~~~~~~e~~i~~~~~qi~~a-L~yl  137 (282)
T cd06636          59 IKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRG-LAHL  137 (282)
T ss_pred             HHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHH
T ss_conf             999999999634898188896689970467878889999968999979999987248999999999999999999-9999


Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             744866178786228980289535743403121698
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      -..|+.|-|.-|+||+++.+|.+-+.|||+...++.
T Consensus       138 H~~~IiHRDlKp~NILl~~~~~iKi~DFGls~~~~~  173 (282)
T cd06636         138 HAHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDR  173 (282)
T ss_pred             HHCCCEEEECCHHHEEECCCCCEEEEECCCCEECCC
T ss_conf             978916623565777887999899975778747666


No 199
>cd07829 STKc_CDK_like The catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of 
Probab=98.63  E-value=1.5e-07  Score=77.70  Aligned_cols=140  Identities=16%  Similarity=0.199  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.||+||-|+||+|+-+.  +|+.||+|+.+.+-.+                                +.+....     
T Consensus         5 ~~iG~G~fg~V~~~~~~~--~~~~vAiK~i~~~~~~--------------------------------~~~~~~~-----   45 (282)
T cd07829           5 EKLGEGTYGVVYKARDKK--TGEIVALKKIRLDNEE--------------------------------EGIPSTA-----   45 (282)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHCC--------------------------------HHHHHHH-----
T ss_conf             995127691999999989--9979999998321140--------------------------------3668999-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCH---HHHHHHHHHHHHHHHH
Q ss_conf             599998898720244677664300001022178--33530024786324267733200225---6899999999999897
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDL---ERLSVTLVQSFLLHTL  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~---~~la~~l~~~~~~qi~  279 (517)
                       .+|++.+.++..     |.  |.+.|.-+.++  -.+||||++| .+.+.-.....+.+.   ..++..++.+. .-+-
T Consensus        46 -~rEi~il~~l~h-----~n--Iv~~~~~~~~~~~~~ivmE~~~~-dL~~~l~~~~~~l~~~~~~~~~~Qi~~al-~~LH  115 (282)
T cd07829          46 -LREISLLKELKH-----PN--IVKLLDVIYTENKLYLVFEYCEM-DLKKYLDKRPGPLSPNLIKSIMYQLLRGL-AYCH  115 (282)
T ss_pred             -HHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHHH-HHHH
T ss_conf             -999999997799-----99--99088898149989999957135-78999983489999999999999999999-9999


Q ss_pred             HCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             4486617878622898028953574340312169
Q gi|254780623|r  280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                      ..|+.|.|.-|.||+++.+|.+-+.|||+...++
T Consensus       116 ~~~IiHRDIKpeNILl~~~~~iKl~DFGla~~~~  149 (282)
T cd07829         116 SHRILHRDLKPQNLLINRDGVLKLADFGLARAFG  149 (282)
T ss_pred             HCCEEEEECCHHHEEECCCCCEEECCCCCCEECC
T ss_conf             8995663256676247799998986675533357


No 200
>cd07861 STKc_CDK1_euk The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 
Probab=98.63  E-value=4.7e-08  Score=81.59  Aligned_cols=139  Identities=20%  Similarity=0.276  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.||-|.||+|+-+.  +|+.||||+.+....+.                            .    ....+.    
T Consensus         6 ~~lG~G~fg~V~~~~~~~--t~~~vAvK~i~~~~~~~----------------------------~----~~~~~~----   47 (285)
T cd07861           6 EKIGEGTYGVVYKGRNKK--TGQIVAMKKIRLESEEE----------------------------G----VPSTAI----   47 (285)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEECCCCCH----------------------------H----HHHHHH----
T ss_conf             790128791999999889--99899999980012344----------------------------6----799999----


Q ss_pred             HHHHHHHHHHHHCCCCCCCC-CCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-----
Q ss_conf             59999889872024467766-430000102217833530024786324267733200225689999999999989-----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQG-FRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT-----  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi-----  278 (517)
                        +|...+..++.     |. |..=.++.+ .+.-.+||||+.|--.+-.......    +.+-+..+..|++|+     
T Consensus        48 --~Ei~il~~l~H-----pnIv~~~~~~~~-~~~~~lV~Ey~~~~l~~~l~~~~~~----~~l~~~~i~~~~~ql~~aL~  115 (285)
T cd07861          48 --REISLLKELQH-----PNIVCLQDVLMQ-ESRLYLVFEFLSMDLKKYLDSLPKG----QYMDSMLVKSYLYQILQGIL  115 (285)
T ss_pred             --HHHHHHHHCCC-----CCEEEEEEEEEE-CCEEEEEEECCCCCHHHHHHHHCCC----CCCCHHHHHHHHHHHHHHHH
T ss_conf             --99999987799-----998047245701-9979999972688779999874258----98999999999999999999


Q ss_pred             --HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             --74486617878622898028953574340312169
Q gi|254780623|r  279 --LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       279 --~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                        -..|..|.|.-|.||+++.+|.+-+.|||+...+.
T Consensus       116 ylH~~~IiHRDiKP~NIlld~~~~vKl~DFG~a~~~~  152 (285)
T cd07861         116 FCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLARAFG  152 (285)
T ss_pred             HHHHCCCEECCCCCHHEEECCCCCEEEEECCHHHHCC
T ss_conf             9997993647278211688899988980075277629


No 201
>cd05585 STKc_YPK1_like STKc_YPK1_like: Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development.
Probab=98.63  E-value=1.5e-07  Score=77.69  Aligned_cols=135  Identities=21%  Similarity=0.290  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67788886555502128887236876403104688777788999875321146854334691799999998878886559
Q gi|254780623|r  127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR  206 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~  206 (517)
                      |+.||-|+||+|+-++  +|+.||+|+.+..-                +.++           .   +. ..      +.
T Consensus         1 iG~G~fG~V~~a~~~~--t~~~~AiK~i~k~~----------------~~~~-----------~---~~-~~------~~   41 (312)
T cd05585           1 IGKGSFGKVMQVRKKD--TQRIYALKTIRKAH----------------IVSR-----------S---EV-TH------TL   41 (312)
T ss_pred             CCCCCCEEEEEEEECC--CCCEEEEEEECHHH----------------CCCH-----------H---HH-HH------HH
T ss_conf             9668082989999889--99899999983788----------------5698-----------9---99-99------99


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHC-CCH---HHHHHHHHHHHHHHHHH
Q ss_conf             99988987202446776643000010221783--3530024786324267733200-225---68999999999998974
Q gi|254780623|r  207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACG-HDL---ERLSVTLVQSFLLHTLR  280 (517)
Q Consensus       207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~-~d~---~~la~~l~~~~~~qi~~  280 (517)
                      +|...+.++.     .|.|  -+.|..+.+++  .+||||++|-.+.+.  +...+ .+-   +.++..++.+ +.-+-.
T Consensus        42 ~E~~il~~l~-----hp~I--v~l~~~f~~~~~~ylvmEy~~gG~L~~~--l~~~~~l~e~~~~~~~~qil~a-L~ylH~  111 (312)
T cd05585          42 AERTVLAQVN-----CPFI--VPLKFSFQSPEKLYFVLAFINGGELFHH--LQKEGRFDLSRARFYTAELLCA-LECLHK  111 (312)
T ss_pred             HHHHHHHHCC-----CCCC--CEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHHH
T ss_conf             9999998679-----9988--9499999989999999966799888999--9875999999999999999999-999998


Q ss_pred             CCEECCCCCCCEEEEECCCCEEEEECCHHE
Q ss_conf             486617878622898028953574340312
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKGYIVAVDMGITG  310 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg  310 (517)
                      .|+.|-|.-|.||+++.+|.+.+.|||+..
T Consensus       112 ~~IiHRDLKPeNILl~~~g~iKL~DFGla~  141 (312)
T cd05585         112 FNVIYRDLKPENILLDYQGHIALCDFGLCK  141 (312)
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEECCCHHH
T ss_conf             895057676322322588978750122211


No 202
>cd05062 PTKc_IGF-1R Catalytic Domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh
Probab=98.63  E-value=8.6e-08  Score=79.56  Aligned_cols=145  Identities=16%  Similarity=0.218  Sum_probs=90.9

Q ss_pred             HHHH--HHHHHHHHHHHHHHHEEC---CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf             9867--666778888655550212---88872368764031046887777889998753211468543346917999999
Q gi|254780623|r  121 CEFD--DPIAAASIAQVHPAVVHD---INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL  195 (517)
Q Consensus       121 ~~fd--ePlasASiaQVh~A~l~d---~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~  195 (517)
                      +.++  +.|++||-|.||+|+.+.   +.++.+||||+.+...                                     
T Consensus         6 e~~~i~~~lG~G~fg~Vykg~~~~~~~~~~~~~vAvK~l~~~~-------------------------------------   48 (277)
T cd05062           6 EKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAA-------------------------------------   48 (277)
T ss_pred             HHEEEEEEEECCCCEEEEEEEECCCCCCCCCCEEEEEEECCCC-------------------------------------
T ss_conf             9948756983188809998876485347888589999977565-------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHH-HH-----HCC---CHH
Q ss_conf             9887888655999988987202446776643000010221--783353002478632426773-32-----002---256
Q gi|254780623|r  196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKL-RA-----CGH---DLE  264 (517)
Q Consensus       196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l-~~-----~~~---d~~  264 (517)
                        ...+..+|.+|++.+.+++..     .  |=+.|.-.+  .+..+||||++|-.+.+.-.- ..     .+.   ..+
T Consensus        49 --~~~~~~~f~~E~~~l~~l~h~-----n--Iv~l~g~~~~~~~~~iv~E~~~~G~L~~~l~~~~~~~~~~~~~~~~~~~  119 (277)
T cd05062          49 --SMRERIEFLNEASVMKEFNCH-----H--VVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLK  119 (277)
T ss_pred             --CHHHHHHHHHHHHHHHHCCCC-----C--EEEEEEEEEECCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf             --857899999999999877999-----8--8179999998997799999357990999998606300057534756599


Q ss_pred             ---HHHHHHHH--HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             ---89999999--999989744866178786228980289535743403121698
Q gi|254780623|r  265 ---RLSVTLVQ--SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       265 ---~la~~l~~--~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                         .++..++.  .|++   ..|+.|.|.-|.||+++.|+.+-+-|||+...+.+
T Consensus       120 ~~l~i~~qia~gl~yLH---~~~ivHrDLK~~NiLl~~~~~~Kl~DFGla~~~~~  171 (277)
T cd05062         120 KMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYE  171 (277)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCCCCCCCCCCEEEECCCCCEEEEECCCCEECCC
T ss_conf             99999999999999986---38945365661317888999299830525506566


No 203
>cd06632 STKc_MEKK1_plant Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. ME
Probab=98.62  E-value=6.5e-08  Score=80.51  Aligned_cols=140  Identities=17%  Similarity=0.235  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-|++|+-|-||+|+-+.  +|+.||+|+.+=.-.                     ..    .-.+.+++          
T Consensus         6 ~~iG~G~fg~Vy~~~~~~--~~~~vAiK~i~~~~~---------------------~~----~~~~~~~~----------   48 (258)
T cd06632           6 ELLGSGSFGSVYEGLNLD--DGDFFAVKEVSLADD---------------------GQ----TGQEAVKQ----------   48 (258)
T ss_pred             CEEECCCCEEEEEEEECC--CCCEEEEEEEECCCC---------------------CC----CCHHHHHH----------
T ss_conf             185117581999999889--998999999850102---------------------21----12999999----------


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH----
Q ss_conf             59999889872024467766430000102217--833530024786324267733200225689999999999989----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT----  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi----  278 (517)
                      +.+|++.+.++..     |.  |.+.|.-+.+  .-.+||||++|-.+.+.-  +..+    .+.+..+..|+.|+    
T Consensus        49 ~~~Ei~il~~l~H-----pn--Iv~l~~~~~~~~~~~ivmEy~~~G~L~~~l--~~~~----~l~~~~~~~~~~qi~~aL  115 (258)
T cd06632          49 LEQEIALLSKLQH-----PN--IVQYLGTEREEDNLYIFLELVPGGSLAKLL--KKYG----SFPEPVIRLYTRQILLGL  115 (258)
T ss_pred             HHHHHHHHHHCCC-----CC--CCCEEEEEEECCEEEEEEECCCCCCHHHHH--HHCC----CCCHHHHHHHHHHHHHHH
T ss_conf             9999999986799-----89--893999998899999999786979299999--8749----999999999999999999


Q ss_pred             ---HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             ---744866178786228980289535743403121698
Q gi|254780623|r  279 ---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       279 ---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                         -..|+.|-|.-|.||+++.+|++.+.|||+...++.
T Consensus       116 ~ylH~~~iiHRDlKp~NiLi~~~~~iKl~DFGla~~~~~  154 (258)
T cd06632         116 EYLHDRNTVHRDIKGANILVDTNGVVKLADFGMAKQVVE  154 (258)
T ss_pred             HHHHHCCCEEECCCHHHEEECCCCCEEECCCCCCEECCC
T ss_conf             999988886500474664788999989853787167557


No 204
>cd05050 PTKc_Musk Catalytic Domain of the Protein Tyrosine Kinase, Muscle-specific kinase. Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M
Probab=98.62  E-value=9.3e-08  Score=79.29  Aligned_cols=143  Identities=18%  Similarity=0.272  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHHHEE---CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             66677888865555021---288872368764031046887777889998753211468543346917999999988788
Q gi|254780623|r  125 DPIAAASIAQVHPAVVH---DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKM  201 (517)
Q Consensus       125 ePlasASiaQVh~A~l~---d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~  201 (517)
                      +-|++||-|.||+|+.+   ++..+..||||+..+..                                       .-..
T Consensus        11 ~~iG~G~fG~Vy~a~~~g~~~~~~~~~vAvK~l~~~~---------------------------------------~~~~   51 (288)
T cd05050          11 RDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA---------------------------------------SADM   51 (288)
T ss_pred             EEEECCCCCEEEEEEECCCCCCCCCEEEEEEEECCCC---------------------------------------CHHH
T ss_conf             3982287818999997586458857599999988567---------------------------------------9789


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCHHCCC--HHCCCCEEEEECCCCCCCCHHHHHHH----------------HCCC-
Q ss_conf             8655999988987202446776643000010--22178335300247863242677332----------------0022-
Q gi|254780623|r  202 EMDLRLEAAAFSEMAENTVKDQGFRVPKIDW--NRTERDVITMEWIDGVKISDTEKLRA----------------CGHD-  262 (517)
Q Consensus       202 ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~--~~st~~VLvmE~i~G~~i~d~~~l~~----------------~~~d-  262 (517)
                      +-+|.+|++-+.+++.     |.|  =+.|.  .......+||||+++-.+.+.-.-..                .+.+ 
T Consensus        52 ~~~f~~E~~il~~l~H-----pNI--V~~~g~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  124 (288)
T cd05050          52 QADFQREAALMAEFDH-----PNI--VKLLGVCAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNP  124 (288)
T ss_pred             HHHHHHHHHHHHHCCC-----CCC--CCEEEEEEECCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9999999999985799-----988--337679966997699999168990999998528542100011221000145777


Q ss_pred             -------HHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             -------5689999999999989744866178786228980289535743403121698
Q gi|254780623|r  263 -------LERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       263 -------~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                             .-.++..++.. +.-+-..|+.|.|.-|.|++++.++.+-+-|||....+..
T Consensus       125 ~~l~~~~~l~i~~~ia~g-l~yLH~~~ivHrDlKp~NiLl~~~~~~Kl~DFGls~~~~~  182 (288)
T cd05050         125 LPLSCTEQLCIAKQVAAG-MAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYS  182 (288)
T ss_pred             CCCCHHHHHHHHHHHHHH-HHHHHHCCEECCCCCCCEEEECCCCCEEEEECCCCEECCC
T ss_conf             888999999999999999-9998639905267660668987999888600525404366


No 205
>cd05616 STKc_cPKC_beta STKc_cPKC_beta: Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicin
Probab=98.62  E-value=4.7e-07  Score=73.84  Aligned_cols=139  Identities=19%  Similarity=0.214  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.||-|+||.|+-+.  +|+.||||+.+.....  ..                            ++.. ..     
T Consensus         6 k~LG~G~fG~V~la~~~~--t~~~~AiK~i~k~~~~--~~----------------------------~~~~-~~-----   47 (323)
T cd05616           6 MVLGKGSFGKVMLAERKG--TDELYAIKILKKDVVI--QD----------------------------DDVE-CT-----   47 (323)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHCC--CH----------------------------HHHH-HH-----
T ss_conf             795227680999999999--9989999998278843--84----------------------------7899-99-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCC-CH---HHHHHHHHHHHHHHH
Q ss_conf             599998898720244677664300001022178--335300247863242677332002-25---689999999999989
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGH-DL---ERLSVTLVQSFLLHT  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~-d~---~~la~~l~~~~~~qi  278 (517)
                       ..|.+-+....    ..+.  |.+.|.-+.+.  -.+||||++|-.+.+.  +...+. +-   ..++..++.+ +.-+
T Consensus        48 -~~E~~il~~~~----~~p~--Iv~l~~~f~~~~~lylVmEy~~gGdL~~~--l~~~~~l~e~~~~~~~~qi~~a-L~yL  117 (323)
T cd05616          48 -MVEKRVLALSG----KPPF--LTQLHSCFQTMDRLYFVMEYVNGGDLMYQ--IQQVGRFKEPHAVFYAAEIAIG-LFFL  117 (323)
T ss_pred             -HHHHHHHHHHC----CCCE--EEEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHH
T ss_conf             -99999999717----9992--85999999989999999958899808999--9981999989999999999999-9999


Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             744866178786228980289535743403121
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                      -..|+.|-|.-|.||+++.+|.+-+.|||+...
T Consensus       118 H~~~IiHRDLKPeNILl~~~g~iKL~DFGlak~  150 (323)
T cd05616         118 HSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKE  150 (323)
T ss_pred             HHCCCCCCCCCCCCEEECCCCCEEEEEHHHHHH
T ss_conf             877975025477661476899778853215444


No 206
>cd07873 STKc_PCTAIRE1 The catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and ma
Probab=98.62  E-value=7.4e-08  Score=80.04  Aligned_cols=133  Identities=20%  Similarity=0.308  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.||-|+||+|.-+.  +|+.||||+.+-.-.                     ..            .....     
T Consensus        12 ~~iG~G~fg~V~~~~~~~--t~~~vAiK~i~~~~~---------------------~~------------~~~~~-----   51 (301)
T cd07873          12 DKLGEGTYATVYKGRSKL--TDNLVALKEIRLEHE---------------------EG------------APCTA-----   51 (301)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHHC---------------------CC------------HHHHH-----
T ss_conf             387237692999999889--998999999854332---------------------31------------38899-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH----
Q ss_conf             599998898720244677664300001022178--33530024786324267733200225689999999999989----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT----  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi----  278 (517)
                       .+|.+.+.+++.     |.|  =+.|.-+.++  -.|||||++|. +.+  .++..+.   .+-+.-++.|++|+    
T Consensus        52 -~~Ei~il~~l~H-----pnI--v~l~~~~~~~~~~~lV~Ey~~~~-L~~--~l~~~~~---~~~~~~i~~~~~Qll~al  117 (301)
T cd07873          52 -IREVSLLKDLKH-----ANI--VTLHDIIHTEKSLTLVFEYLDKD-LKQ--YLDDCGN---SINMHNVKLFLFQLLRGL  117 (301)
T ss_pred             -HHHHHHHHHCCC-----CCC--CEEEEEEEECCEEEEEEECCCHH-HHH--HHHHCCC---CCCHHHHHHHHHHHHHHH
T ss_conf             -999999987799-----997--64989994499789999636666-999--9997289---899999999999999999


Q ss_pred             ---HHCCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             ---744866178786228980289535743403121
Q gi|254780623|r  279 ---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       279 ---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                         -..|+.|.|.-|.||+++.+|.+-+.|||+...
T Consensus       118 ~ylH~~gIiHRDiKPeNILl~~~~~iKl~DFGla~~  153 (301)
T cd07873         118 NYCHRRKVLHRDLKPQNLLINERGELKLADFGLARA  153 (301)
T ss_pred             HHHHHCCCEECCCCHHHEEECCCCCEEEEECCCCHH
T ss_conf             999978907642761335888999889997275031


No 207
>cd07835 STKc_CDK1_like The catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1
Probab=98.62  E-value=1e-07  Score=78.95  Aligned_cols=136  Identities=20%  Similarity=0.288  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|++||-|.||+|+-+.  +|+.||||+.+-.-.+                                +.......    
T Consensus         5 ~~iG~G~fg~V~~a~~~~--t~~~vAiK~i~~~~~~--------------------------------~~~~~~~~----   46 (283)
T cd07835           5 EKIGEGTYGVVYKARDKL--TGEIVALKKIRLETED--------------------------------EGVPSTAI----   46 (283)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEECCCCC--------------------------------HHHHHHHH----
T ss_conf             794137182999999889--9979999998100134--------------------------------56799999----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHH-HHHHHHCCCHHHHHHHHHHHHHHHH---
Q ss_conf             599998898720244677664300001022--1783353002478632426-7733200225689999999999989---
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDT-EKLRACGHDLERLSVTLVQSFLLHT---  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~-~~l~~~~~d~~~la~~l~~~~~~qi---  278 (517)
                        +|.+.++.++.     |.  |-+.|.-+  .+.-.+||||++| .+.+. ......+     +.+..+..|+.|+   
T Consensus        47 --~Ei~il~~l~h-----pn--Iv~~~~~~~~~~~~~iv~E~~~~-~L~~~~~~~~~~~-----~~~~~~~~~~~qil~a  111 (283)
T cd07835          47 --REISLLKELNH-----PN--IVRLLDVVHSENKLYLVFEFLDL-DLKKYMDSSPLTG-----LDPPLIKSYLYQLLQG  111 (283)
T ss_pred             --HHHHHHHHCCC-----CC--EEEEEEEEEECCEEEEEEECCCC-CHHHHHHHCCCCC-----CCHHHHHHHHHHHHHH
T ss_conf             --99999987799-----99--83063546009989999976898-7899998635789-----8999999999999999


Q ss_pred             ----HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             ----74486617878622898028953574340312169
Q gi|254780623|r  279 ----LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       279 ----~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                          -..|+.|-|.-|.||+++.+|.+-+.|||+...+.
T Consensus       112 l~ylH~~~IiHRDiKp~NILl~~~~~iKl~DFGla~~~~  150 (283)
T cd07835         112 IAYCHSHRVLHRDLKPQNLLIDREGALKLADFGLARAFG  150 (283)
T ss_pred             HHHHHHCCCEECCCCCCCEEECCCCCEEEEECCCHHHCC
T ss_conf             999997893664077200688899988998767322148


No 208
>cd06644 STKc_STK10_LOK Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.
Probab=98.61  E-value=2.6e-07  Score=75.83  Aligned_cols=139  Identities=17%  Similarity=0.169  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-|++||-|.||+|+-+.  +|+.||+|+....-.+                                 +.       -+
T Consensus        18 ~~lG~G~fg~Vy~a~~~~--t~~~~A~K~i~~~~~~---------------------------------~~-------~~   55 (292)
T cd06644          18 GELGDGAFGKVYKAKNKE--TGALAAAKVIETKSEE---------------------------------EL-------ED   55 (292)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCHH---------------------------------HH-------HH
T ss_conf             698118891999999889--9969999998717999---------------------------------99-------99


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHHHCCCH---HHHHHHHHHHHHHHHH
Q ss_conf             5999988987202446776643000010221--7833530024786324267733200225---6899999999999897
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRACGHDL---ERLSVTLVQSFLLHTL  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~~~~d~---~~la~~l~~~~~~qi~  279 (517)
                      +.+|.+.+..+.     .|.|  -+.|.-+.  +.-.+||||++|-.+.+.-.-...+.+-   ..++..++.+ +.-+-
T Consensus        56 ~~~Ei~il~~l~-----HpnI--v~l~~~~~~~~~~~ivmE~~~gg~L~~~~~~~~~~l~e~~~~~i~~qil~a-l~ylH  127 (292)
T cd06644          56 YMVEIEILATCN-----HPYI--VKLLGAFYWDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVICRQMLEA-LQYLH  127 (292)
T ss_pred             HHHHHHHHHHCC-----CCCC--CCEEEEEEECCEEEEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH-HHHHH
T ss_conf             999999998779-----9999--909899998998999998179983999999717998999999999999999-99999


Q ss_pred             HCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             4486617878622898028953574340312169
Q gi|254780623|r  280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                      ..|+.|-|.-|.||+++.+|.+-+.|||+.....
T Consensus       128 ~~~IiHRDlKp~NILl~~~g~vKl~DFGls~~~~  161 (292)
T cd06644         128 SMKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNV  161 (292)
T ss_pred             HCCCEECCCCHHHEEECCCCCEEEEECCCCEECC
T ss_conf             7991644487675888799989996688864478


No 209
>cd07843 STKc_CDC2L1 The catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1 subfamily. Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CD
Probab=98.61  E-value=1.4e-07  Score=77.81  Aligned_cols=141  Identities=14%  Similarity=0.228  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-|++|+-|+||+|.-+.  +|+.||+|+.+-.-.                                -+.+....     
T Consensus        11 ~~iG~G~fg~V~~~~~~~--t~~~vAiK~i~~~~~--------------------------------~~~~~~~~-----   51 (293)
T cd07843          11 NRIEEGTYGVVYRARDKK--TGEIVALKKLKMEKE--------------------------------KEGFPITS-----   51 (293)
T ss_pred             EEEECCCCCEEEEEEECC--CCCEEEEEEEECHHH--------------------------------HHHHHHHH-----
T ss_conf             783136280999999889--998999999800042--------------------------------20417889-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC-CCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-----
Q ss_conf             5999988987202446776643000010221-7833530024786324267733200225689999999999989-----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRT-ERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT-----  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s-t~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi-----  278 (517)
                       .+|.+.+..++.    ..-|.+-+++-.-. +.-.+||||++| .+.+.  +...   +..+...-+..+++|+     
T Consensus        52 -~rEi~~l~~l~h----pnIv~~~~~~~~~~~~~~~lvmE~~~~-dl~~~--~~~~---~~~~~~~~i~~i~~qil~aL~  120 (293)
T cd07843          52 -LREINILLKLQH----PNIVTVKEVVVGSNLDKIYMVMEYVEH-DLKSL--METM---KQPFLQSEVKTLMLQLLSGVA  120 (293)
T ss_pred             -HHHHHHHHHCCC----CCEEEEEEEEECCCCCEEEEEEECCCC-CHHHH--HHHC---CCCCCHHHHHHHHHHHHHHHH
T ss_conf             -999999997689----994158887605889879999937888-78999--9974---899999999999999999999


Q ss_pred             --HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             --7448661787862289802895357434031216989
Q gi|254780623|r  279 --LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       279 --~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                        -..|..|-|.-|.||+++.+|++.+.|||+...+...
T Consensus       121 yLH~~~IiHRDiKPeNILl~~~~~vKi~DFG~a~~~~~~  159 (293)
T cd07843         121 HLHDNWILHRDLKTSNLLLNNRGILKICDFGLAREYGSP  159 (293)
T ss_pred             HHHHCCEEEEECCHHHEEECCCCCEEEECCCCHHHCCCC
T ss_conf             999889357256756657878998899224753342887


No 210
>cd05088 PTKc_Tie2 Catalytic Domain of the Protein Tyrosine Kinase, Tie2. Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A
Probab=98.61  E-value=7.5e-07  Score=72.27  Aligned_cols=145  Identities=14%  Similarity=0.162  Sum_probs=83.0

Q ss_pred             HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99867--6667788886555502128887236876403104688777788999875321146854334691799999998
Q gi|254780623|r  120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ  197 (517)
Q Consensus       120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~  197 (517)
                      |..|+  +.|+.||-|+||+|+.+..+....||||..+....+    +                                
T Consensus         6 ~~d~~~~~~IG~G~fG~Vyk~~~~~~g~~~~vavK~~~~~~~~----~--------------------------------   49 (303)
T cd05088           6 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASK----D--------------------------------   49 (303)
T ss_pred             HHHCEEEEEEEECCCCEEEEEEECCCCEEEEEEEEEECCCCCH----H--------------------------------
T ss_conf             7995887799507784999999938997999999997844484----7--------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHH---------------HC
Q ss_conf             8788865599998898720244677664300001022--178335300247863242677332---------------00
Q gi|254780623|r  198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRA---------------CG  260 (517)
Q Consensus       198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~---------------~~  260 (517)
                         ..-+|.+|++-+.++.+    .|.|.  +.|.-.  ...-.|||||++|-.+.+.-.-..               ..
T Consensus        50 ---~~~~f~~E~~il~~l~~----HpnIv--~l~g~~~~~~~~~lv~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~~  120 (303)
T cd05088          50 ---DHRDFAGELEVLCKLGH----HPNII--NLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTAST  120 (303)
T ss_pred             ---HHHHHHHHHHHHHHCCC----CCCEE--EEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCCCHHHCCCCCCC
T ss_conf             ---89999999999986269----99888--8988983289789999747998599999754665556201002354567


Q ss_pred             CCHH---HHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHE
Q ss_conf             2256---8999999999998974486617878622898028953574340312
Q gi|254780623|r  261 HDLE---RLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITG  310 (517)
Q Consensus       261 ~d~~---~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg  310 (517)
                      .+..   .++..++.. +.-+-..|+.|.|.-|.||+++.++.+-+-|||+..
T Consensus       121 l~~~~~l~i~~qIa~g-l~yLH~~~IiHRDLKp~NILl~~~~~~KI~DFGls~  172 (303)
T cd05088         121 LSSQQLLHFAADVARG-MDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSR  172 (303)
T ss_pred             CCHHHHHHHHHHHHHH-HHHHHCCCEEECCCCHHHEEECCCCCEEEEECCCCC
T ss_conf             8999999999999999-998711986745577411788899978998267786


No 211
>cd05056 PTKc_FAK Catalytic Domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase. Protein Tyrosine Kinase (PTK) family; Focal Adhesion kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions
Probab=98.61  E-value=2e-07  Score=76.64  Aligned_cols=144  Identities=19%  Similarity=0.151  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHHHHEECCCCCC--EEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             6766677888865555021288872--36876403104688777788999875321146854334691799999998878
Q gi|254780623|r  123 FDDPIAAASIAQVHPAVVHDINGYR--KVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTK  200 (517)
Q Consensus       123 fdePlasASiaQVh~A~l~d~~~g~--~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~  200 (517)
                      +.+.|++||-|.||+|+.+..+ |+  .||||+.+........                                     
T Consensus        10 l~~~iG~G~fG~Vy~~~~~~~~-~~~~~vavK~~~~~~~~~~~-------------------------------------   51 (270)
T cd05056          10 LGRCIGEGQFGDVYQGVYMSPE-NEKIAVAVKTCKNCTSPSVR-------------------------------------   51 (270)
T ss_pred             EEEEEEECCCCEEEEEEEECCC-CEEEEEEEEEECCCCCHHHH-------------------------------------
T ss_conf             7119940778799999998689-80899999996601798999-------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHHHHH
Q ss_conf             88655999988987202446776643000010221--783353002478632426773320022568---9999999999
Q gi|254780623|r  201 MEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQSFL  275 (517)
Q Consensus       201 ~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~~~~  275 (517)
                        =.|.+|++-+.+++.     |.|.  +.|. .|  ++-.|||||++|-.+.+.-.-.....+...   ++..++.+ +
T Consensus        52 --~~~~~E~~~l~~l~H-----pnIv--~~~g-~~~~~~~~ivmE~~~~G~L~~~l~~~~~~l~~~~~~~~~~qia~g-l  120 (270)
T cd05056          52 --EKFLQEAYIMRQFDH-----PHIV--KLIG-VITENPVWIVMELAPLGELRSYLQVNKYSLDLASLILYSYQLSTA-L  120 (270)
T ss_pred             --HHHHHHHHHHHHCCC-----CCCC--CEEE-EEEECCEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-H
T ss_conf             --999999999986899-----8988--4999-997498799999249988999998668999999999999999999-9


Q ss_pred             HHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             9897448661787862289802895357434031216989
Q gi|254780623|r  276 LHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       276 ~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      .-+-..|+.|.|.-|.||+++.++.+-+.|||+...+++.
T Consensus       121 ~ylH~~~iiHrDlKp~NiLl~~~~~vKl~DFGls~~~~~~  160 (270)
T cd05056         121 AYLESKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDE  160 (270)
T ss_pred             HHHHHCCCCCCCCCCCCEEECCCCCEEEEECCCCEECCCC
T ss_conf             9997499635757823230479997899956888686788


No 212
>cd05623 STKc_MRCK_alpha STKc_MRCK_alpha: Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway.
Probab=98.61  E-value=3.5e-08  Score=82.60  Aligned_cols=140  Identities=16%  Similarity=0.223  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.|+-|.||+|+.+.  +|+.||+|+.+..-                ...+           .    -...      
T Consensus         7 ~~IG~G~fG~V~~a~~k~--t~~~~AiK~i~k~~----------------~~~~-----------~----~~~~------   47 (332)
T cd05623           7 KVIGRGAFGEVAVVKLKN--ADKVFAMKILNKWE----------------MLKR-----------A----ETAC------   47 (332)
T ss_pred             EEEECCCCCEEEEEEECC--CCCEEEEEEECHHH----------------HCCH-----------H----HHHH------
T ss_conf             786217370999999989--99799999983789----------------2478-----------9----9999------


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHH-HC-CCH---HHHHHHHHHHHHHH
Q ss_conf             599998898720244677664300001022178--335300247863242677332-00-225---68999999999998
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRA-CG-HDL---ERLSVTLVQSFLLH  277 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~-~~-~d~---~~la~~l~~~~~~q  277 (517)
                      +..|...+...     +.+.  |.+.|..+.++  -.|||||+.|-.+.+.  +.. .+ .+-   +.++..++.+ +.-
T Consensus        48 ~~~E~~il~~~-----~hp~--Iv~l~~~f~~~~~~ylvmEy~~gGdL~~~--l~~~~~~l~e~~~~~~~~qi~~a-L~y  117 (332)
T cd05623          48 FREERDVLVNG-----DNQW--ITTLHYAFQDENNLYLVMDYYVGGDLLTL--LSKFEDRLPEDMARFYLAEMVIA-IDS  117 (332)
T ss_pred             HHHHHHHHHHC-----CCCC--EEEEEEEEEECCEEEEEEEECCCCCHHHH--HHHCCCCCCHHHHHHHHHHHHHH-HHH
T ss_conf             99999999858-----9997--66699999989999999994479738999--98606889999999999999999-999


Q ss_pred             HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             974486617878622898028953574340312169
Q gi|254780623|r  278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                      +-..|+.|-|.-|.||+++.+|.+-+.|||....+.
T Consensus       118 lH~~~IiHRDLKPeNILl~~~g~iKL~DFG~a~~~~  153 (332)
T cd05623         118 VHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLM  153 (332)
T ss_pred             HHHCCCEECCCCCCCCCCCCCCCEEEECCHHHHEEC
T ss_conf             998797531125766033589988983000321003


No 213
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=98.61  E-value=1.2e-07  Score=78.34  Aligned_cols=146  Identities=15%  Similarity=0.228  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.||.|+||+|+-+.  +|+.||+|+..-.-                           +.     +....      .
T Consensus        15 e~IG~GsFG~VylAr~k~--Tg~~vAiK~I~~~~---------------------------l~-----~k~r~------~   54 (484)
T PTZ00266         15 NRIGSGRFGEVFLVRHKH--TGQLFCWKVVAYKG---------------------------LS-----DKEKQ------Q   54 (484)
T ss_pred             EEECCCCCEEEEEEEECC--CCCEEEEEEECHHH---------------------------CC-----HHHHH------H
T ss_conf             596247782999999878--99899999975566---------------------------79-----99999------9


Q ss_pred             HHHHHHHHHHHHCCCCCCCC-CCCHHCCCHHCCC-CEEEEECCCCCCCCHHH-HH-HHHC-CCHH---HHHHHHHHH--H
Q ss_conf             59999889872024467766-4300001022178-33530024786324267-73-3200-2256---899999999--9
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQG-FRVPKIDWNRTER-DVITMEWIDGVKISDTE-KL-RACG-HDLE---RLSVTLVQS--F  274 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~st~-~VLvmE~i~G~~i~d~~-~l-~~~~-~d~~---~la~~l~~~--~  274 (517)
                      +.+|.+.+..++.     |. |..=..|.+-++. -.|||||++|-.+.+.- .. ...+ .+.+   .++..++.+  |
T Consensus        55 l~~Ei~ILk~L~H-----PnIVk~yd~f~d~~~~~lyIVMEYc~GGDL~~~I~~~~~~~~~l~E~~i~~i~~QLl~AL~y  129 (484)
T PTZ00266         55 LVMEVNVIRELNH-----PNIVRYIDRMIDKRRQLLYILMEYCDAGDLGENMRQFYKHYKLVNEQVIFDIALQLIFALAY  129 (484)
T ss_pred             HHHHHHHHHHCCC-----CCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             9999999997799-----99973889999479998999994889981899999998606899999999999999999999


Q ss_pred             HHHHH----HCCEECCCCCCCEEEEECCCC--------EEEEECCHHEECCHH
Q ss_conf             99897----448661787862289802895--------357434031216989
Q gi|254780623|r  275 LLHTL----RDGFFHADLHPGNLFVDSKGY--------IVAVDMGITGRLSKR  315 (517)
Q Consensus       275 ~~qi~----~~GfFHaDPHpGNi~v~~dg~--------i~~lDfG~vg~l~~~  315 (517)
                      +++.-    ..|+.|-|.-|.||+++.++.        +-+.|||+...++..
T Consensus       130 LH~~~~~~~s~~IIHRDLKPeNILL~~~~~~dg~~~~viKL~DFGLAk~l~~~  182 (484)
T PTZ00266        130 CHNCKSGTKTGKVLHRDLKPQNILLSTKHNKDGNKSYVCKIGDFGLCRQIGMS  182 (484)
T ss_pred             HHHCCCCCCCCCEECCCCCHHHEEECCCCCCCCCCCCCEEEEECCCCEECCCC
T ss_conf             97254434558876178877987853576656776750689765675157998


No 214
>cd05582 STKc_RSK_N STKc_RSK_N: Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein ki
Probab=98.61  E-value=1.4e-07  Score=77.91  Aligned_cols=138  Identities=17%  Similarity=0.246  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHEE-CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             6677888865555021-288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  126 PIAAASIAQVHPAVVH-DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       126 PlasASiaQVh~A~l~-d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      .|+.||-|+||.|+-. +.++|+.+|+|+.+...-.  ..                         +           +..
T Consensus         3 ~iG~G~fG~Vylv~~~~~~~tg~~~AiK~i~k~~~~--~~-------------------------~-----------~~~   44 (318)
T cd05582           3 VLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLK--VR-------------------------D-----------RVR   44 (318)
T ss_pred             EECCCCCCEEEEEEEEECCCCCCEEEEEEECHHHCC--HH-------------------------H-----------HHH
T ss_conf             750189808999997000788918999998357668--67-------------------------8-----------999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCC-CH---HHHHHHHHHHHHHHH
Q ss_conf             599998898720244677664300001022178--335300247863242677332002-25---689999999999989
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGH-DL---ERLSVTLVQSFLLHT  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~-d~---~~la~~l~~~~~~qi  278 (517)
                      ..+|.+-+.++.     +|.  |-+.|..+.++  -.|||||++|-.+.+.  +...+. +.   +..+..++.+ +.-+
T Consensus        45 ~~~E~~il~~l~-----Hp~--Iv~l~~~f~~~~~lylvmEy~~gGdL~~~--l~~~~~l~e~~~~~~~~qi~~a-L~yl  114 (318)
T cd05582          45 TKMERDILAEVN-----HPF--IVKLHYAFQTEGKLYLILDFLRGGDLFTR--LSKEVMFTEEDVKFYLAELALA-LDHL  114 (318)
T ss_pred             HHHHHHHHHHCC-----CCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHCCCCCCHHHHHHHHHHHHHH-HHHH
T ss_conf             999999998779-----998--89199999989989999955899848776--3016899999999999999999-9999


Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             744866178786228980289535743403121
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                      -..|+.|-|.-|.||+++.+|.+-+.|||+...
T Consensus       115 H~~~IiHRDlKPeNILld~~g~iKL~DFGlak~  147 (318)
T cd05582         115 HSLGIIYRDLKPENILLDEEGHIKLTDFGLSKE  147 (318)
T ss_pred             HHCCCEEEEECCCCCCCCCCCCEEECCCCHHHH
T ss_conf             878987210145445417889886423122020


No 215
>cd05619 STKc_nPKC_theta STKc_nPKC_theta: Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other
Probab=98.60  E-value=2.6e-07  Score=75.84  Aligned_cols=137  Identities=19%  Similarity=0.274  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67788886555502128887236876403104688777788999875321146854334691799999998878886559
Q gi|254780623|r  127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR  206 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~  206 (517)
                      |+.||-|.||.|+-+.  +|+.||||+.+.....   .                .           ++.. ..      .
T Consensus         3 IG~G~fG~V~la~~~~--t~~~~AiK~i~k~~~~---~----------------~-----------~~~~-~~------~   43 (316)
T cd05619           3 LGKGSFGKVFLAELKG--TNQFFAIKALKKDVVL---M----------------D-----------DDVE-CT------M   43 (316)
T ss_pred             EEECCCEEEEEEEECC--CCCEEEEEEECHHHCC---C----------------C-----------HHHH-HH------H
T ss_conf             4328895999999999--9989999998178733---7----------------1-----------5899-99------9


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHC-CCH---HHHHHHHHHHHHHHHHH
Q ss_conf             9998898720244677664300001022178--33530024786324267733200-225---68999999999998974
Q gi|254780623|r  207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACG-HDL---ERLSVTLVQSFLLHTLR  280 (517)
Q Consensus       207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~-~d~---~~la~~l~~~~~~qi~~  280 (517)
                      .|.+.+...   . +.|.  |-+.|..+.++  -.|||||++|-.+.+.  +...+ .+.   ...+..++.+ +.-+-.
T Consensus        44 ~E~~il~~~---~-~Hp~--Iv~l~~~f~~~~~lylvmEy~~gGdL~~~--l~~~~~~~~~~a~~~~~qi~~a-L~ylH~  114 (316)
T cd05619          44 VEKRVLSLA---W-EHPF--LTHLYCTFQTKENLFFVMEYLNGGDLMFH--IQSCHKFDLPRATFYAAEIICG-LQFLHS  114 (316)
T ss_pred             HHHHHHHHH---C-CCCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHHH
T ss_conf             999999973---7-9998--88599999989999999975699878887--8643899999999999999999-999987


Q ss_pred             CCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             4866178786228980289535743403121
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                      .|+.|-|.-|.||+++.+|.+-+.|||.+..
T Consensus       115 ~~IiHRDlKpeNILl~~~g~iKL~DFGlak~  145 (316)
T cd05619         115 KGIVYRDLKLDNILLDTDGHIKIADFGMCKE  145 (316)
T ss_pred             CCEEECCCCCCCCCCCCCCCEEEECCCHHHH
T ss_conf             8947443476565525799778731125665


No 216
>cd07878 STKc_p38beta_MAPK11 The catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11,
Probab=98.60  E-value=5.8e-08  Score=80.90  Aligned_cols=157  Identities=16%  Similarity=0.205  Sum_probs=89.5

Q ss_pred             HHCCCCHHHHHHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             404788999999867--666778888655550212888723687640310468877778899987532114685433469
Q gi|254780623|r  110 SALKAPIEELYCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLC  187 (517)
Q Consensus       110 ~elg~~~~~~F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~  187 (517)
                      +|+++.+=++=..++  +.|++|+-|+||+|.-.  .+|+.||||+.+.........                       
T Consensus         4 ~~~~~~~w~i~erY~~~~~IG~G~fG~Vy~a~d~--~t~~~vAiK~i~~~~~~~~~~-----------------------   58 (343)
T cd07878           4 QELNKTVWEVPERYQNLTPVGSGAYGSVCSAYDT--RLRQKVAVKKLSRPFQSLIHA-----------------------   58 (343)
T ss_pred             EECCCEEECCCCCEEEEEEEECCCCEEEEEEEEC--CCCCEEEEEEECCCHHHHHHH-----------------------
T ss_conf             9758705667547287369731608499999989--999899999988201235889-----------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCC-----HHCCCCEEEEECCCCCCCCHHHHHHHHCCC
Q ss_conf             179999999887888655999988987202446776643000010-----221783353002478632426773320022
Q gi|254780623|r  188 FSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDW-----NRTERDVITMEWIDGVKISDTEKLRACGHD  262 (517)
Q Consensus       188 ~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~-----~~st~~VLvmE~i~G~~i~d~~~l~~~~~d  262 (517)
                               .      .+.+|++.+..+..    ..-|.+-.+|.     +-...-.+|||+. |..+.+..  +.....
T Consensus        59 ---------~------~~~rEi~il~~l~H----~nIv~l~~~f~~~~~~~~~~~~~lv~e~~-g~~L~~~~--k~~~l~  116 (343)
T cd07878          59 ---------R------RTYRELRLLKHMKH----ENVIGLLDVFTPATSIENFNEVYLVTNLM-GADLNNIV--KCQKLS  116 (343)
T ss_pred             ---------H------HHHHHHHHHHHCCC----CCCCEEEEEECCCCCCCCCCEEEEEEECC-CCCHHHHH--HCCCCC
T ss_conf             ---------9------99999999986689----89411788851466555587699998058-96799998--629999


Q ss_pred             H---HHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             5---689999999999989744866178786228980289535743403121698
Q gi|254780623|r  263 L---ERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       263 ~---~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      .   +.++..++.+ +.-+-..|+.|-|.-|.||+++.+|++-+.|||.....+.
T Consensus       117 e~~i~~i~~Qil~a-L~ylHs~~IIHRDLKP~NILl~~~~~vKL~DFGlA~~~~~  170 (343)
T cd07878         117 DEHVQFLIYQLLRG-LKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLARQADD  170 (343)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHCCCEECCCCHHHEEECCCCCEEEEECCCCEECCC
T ss_conf             99999999999999-9999888855466872554686778779841446611588


No 217
>cd05589 STKc_PKN STKc_PKN: Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, ce
Probab=98.60  E-value=2.1e-07  Score=76.52  Aligned_cols=141  Identities=15%  Similarity=0.147  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.||-|+||.|+-+.  +|+.||+|+.+..--                ..+           .   + ...+..|  
T Consensus         5 ~~lG~G~fG~V~la~~~~--t~~~~AiK~i~k~~~----------------~~~-----------~---~-~~~~~~E--   49 (324)
T cd05589           5 AVLGRGHFGKVLLAEYKK--TGELYAIKALKKGDI----------------IAR-----------D---E-VESLMCE--   49 (324)
T ss_pred             EEEECCCCCEEEEEEECC--CCCEEEEEEEEHHHC----------------CCH-----------H---H-HHHHHHH--
T ss_conf             998227381999999999--998999999857884----------------274-----------7---9-9999999--


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHH---HHHHHHHHHHHHHHH
Q ss_conf             599998898720244677664300001022178--335300247863242677332002256---899999999999897
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLE---RLSVTLVQSFLLHTL  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~l~~~~~~qi~  279 (517)
                          .+-++.... . ..|.  |-+.|.-+.++  -.+||||++|-.+...  ++....+-.   ..+..++.+ +.-+-
T Consensus        50 ----~~il~~~~~-~-~HP~--Iv~l~~~f~~~~~~ylvmEy~~gGdL~~~--i~~~~l~e~~~~~~~~qi~~a-L~ylH  118 (324)
T cd05589          50 ----KRIFETANS-E-RHPF--LVNLFACFQTEDHVCFVMEYAAGGDLMMH--IHTDVFSEPRAVFYAACVVLG-LQYLH  118 (324)
T ss_pred             ----HHHHHHHHH-C-CCCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHCCCCCHHHHHHHHHHHHHH-HHHHH
T ss_conf             ----999999864-7-9999--89499999989999999977999869999--743899999999999999999-99999


Q ss_pred             HCCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             44866178786228980289535743403121
Q gi|254780623|r  280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                      ..|+.|-|.-|.||+++.+|.+-+.|||+...
T Consensus       119 ~~~IiHRDlKPeNILl~~~g~iKL~DFGlak~  150 (324)
T cd05589         119 ENKIVYRDLKLDNLLLDTEGYVKIADFGLCKE  150 (324)
T ss_pred             HCCEEEEECCCCCCCCCCCCCEEEEECCHHHH
T ss_conf             78988985365442136899889965111121


No 218
>cd05597 STKc_DMPK_like STKc_DMPK_like: Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, and cardiac conduction defects. The genetic basis for DM1 is the mutational 
Probab=98.60  E-value=5.3e-08  Score=81.16  Aligned_cols=141  Identities=16%  Similarity=0.244  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.||-|.||+|+-+.  +|+.||+|+.+..       +         ...+          ..     ...+.+   
T Consensus         7 ~~IG~G~fG~V~~a~~k~--tg~~~AiKii~k~-------~---------~~~~----------~~-----~~~~~~---   50 (331)
T cd05597           7 KVIGRGAFGEVAVVKMKN--TGQVYAMKILNKW-------E---------MLKR----------AE-----TACFRE---   50 (331)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECHH-------H---------HCCH----------HH-----HHHHHH---
T ss_conf             897327382999999989--9989999998378-------9---------2278----------89-----999999---


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHC--CCH---HHHHHHHHHHHHHH
Q ss_conf             5999988987202446776643000010221783--3530024786324267733200--225---68999999999998
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACG--HDL---ERLSVTLVQSFLLH  277 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~--~d~---~~la~~l~~~~~~q  277 (517)
                         |...+...     +.+.  |.+.|..+.+++  .|||||+.|-.+.+.  +...+  .+-   +.++..++.+ +.-
T Consensus        51 ---E~~il~~~-----~hp~--Iv~l~~~f~~~~~~ylvmEy~~gGdL~~~--l~~~~~~l~e~~a~~~~~qi~~a-L~y  117 (331)
T cd05597          51 ---ERDVLVNG-----DRRW--ITNLHYAFQDENNLYLVMDYYVGGDLLTL--LSKFEDRLPEDMARFYLAEMVLA-IDS  117 (331)
T ss_pred             ---HHHHHHHC-----CCCC--EEEEEEEEEECCEEEEEEEECCCCCHHHH--HHHHCCCCCHHHHHHHHHHHHHH-HHH
T ss_conf             ---99999857-----9998--74799999979999999981379746889--98606789999999999999999-999


Q ss_pred             HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             9744866178786228980289535743403121698
Q gi|254780623|r  278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      +-..|+.|-|.-|.||+++.+|.+-+.|||....+..
T Consensus       118 lH~~~IiHRDlKPeNILl~~~g~iKL~DFG~a~~~~~  154 (331)
T cd05597         118 VHQLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLA  154 (331)
T ss_pred             HHHCCEECCCCCCCCCCCCCCCCEEEEECCHHHEECC
T ss_conf             9977906154677663346899889984112203347


No 219
>cd05091 PTKc_Ror2 Catalytic Domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like orphan receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly
Probab=98.60  E-value=5.8e-07  Score=73.13  Aligned_cols=148  Identities=11%  Similarity=0.124  Sum_probs=90.9

Q ss_pred             HHHH--HHHHHHHHHHHHHHHEEC---CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf             9867--666778888655550212---88872368764031046887777889998753211468543346917999999
Q gi|254780623|r  121 CEFD--DPIAAASIAQVHPAVVHD---INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL  195 (517)
Q Consensus       121 ~~fd--ePlasASiaQVh~A~l~d---~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~  195 (517)
                      +.++  |.|++||.|+||+|+++.   ++.++.||||+.+......                                  
T Consensus         5 ~~~~~~e~IG~G~fG~Vykg~~~~~~~~~~~~~VAiK~l~~~~~~~----------------------------------   50 (283)
T cd05091           5 STVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGP----------------------------------   50 (283)
T ss_pred             HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHH----------------------------------
T ss_conf             9979998971588849999998788778777699999978115868----------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC---CCCEEEEECCCCCCCCHHHHHHHH-------------
Q ss_conf             9887888655999988987202446776643000010221---783353002478632426773320-------------
Q gi|254780623|r  196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT---ERDVITMEWIDGVKISDTEKLRAC-------------  259 (517)
Q Consensus       196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s---t~~VLvmE~i~G~~i~d~~~l~~~-------------  259 (517)
                         ..+  +|.+|+..+.+++.     |.|.  +.|. .|   .+..+||||+++-.+.+.-.....             
T Consensus        51 ---~~~--~f~~E~~~l~~l~H-----pNIv--~~~G-~~~~~~~~~lv~e~~~~G~L~~~L~~~~~~~~~~~~~~~~~~  117 (283)
T cd05091          51 ---LRE--EFRHEAMLRSRLQH-----PNIV--CLLG-VVTKEQPMSMIFSYSSHGDLHEFLVMRSPHSDVGSTDDDKTV  117 (283)
T ss_pred             ---HHH--HHHHHHHHHHHCCC-----CCCC--CEEE-EEEECCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCHH
T ss_conf             ---999--99999999981899-----8988--3989-997689029999906899189999760654433444321010


Q ss_pred             --CCCHH---HHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHH
Q ss_conf             --02256---8999999999998974486617878622898028953574340312169899
Q gi|254780623|r  260 --GHDLE---RLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRE  316 (517)
Q Consensus       260 --~~d~~---~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~  316 (517)
                        ..+..   .++..++.. +.-+-..++.|.|.-|.||+++.++.+-+-|||+...+....
T Consensus       118 ~~~l~~~~~~~i~~qia~g-l~yLH~~~ivHrDlK~~NILl~~~~~vKl~DFGls~~~~~~~  178 (283)
T cd05091         118 KSTLEPADFLHIVTQIAAG-MEFLSSHHVVHKDLAARNVLVFDKLNVKISDLGLFREVYSAD  178 (283)
T ss_pred             CCCCCHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCEECCCCC
T ss_conf             1478999999999999999-999976992678676024898799968997547761556776


No 220
>cd07868 STKc_CDK8 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating R
Probab=98.60  E-value=1e-07  Score=79.02  Aligned_cols=140  Identities=20%  Similarity=0.286  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             66778888655550212888723687640310468877778899987532114685433469179999999887888655
Q gi|254780623|r  126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL  205 (517)
Q Consensus       126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~  205 (517)
                      =|+.||-|+||+|+.+|+.+++.||||+.+..                           ....         ..      
T Consensus         8 kiG~G~fg~V~~~~~~d~~~~~~~AiK~i~~~---------------------------~~~~---------~~------   45 (317)
T cd07868           8 KVGRGTYGHVYKAKRKDGKDDRDYALKQIEGT---------------------------GISM---------SA------   45 (317)
T ss_pred             EEEECCCEEEEEEEEECCCCCEEEEEEEECCC---------------------------CCCH---------HH------
T ss_conf             84106181999999842863849999998988---------------------------7858---------99------


Q ss_pred             HHHHHHHHHHHCCCCCCCC-CCCHHCCCHHCCC-CEEEEECCCCCCCCHHHHHHHH-CCC--HHHHHHHHHHHHHHHHH-
Q ss_conf             9999889872024467766-4300001022178-3353002478632426773320-022--56899999999999897-
Q gi|254780623|r  206 RLEAAAFSEMAENTVKDQG-FRVPKIDWNRTER-DVITMEWIDGVKISDTEKLRAC-GHD--LERLSVTLVQSFLLHTL-  279 (517)
Q Consensus       206 ~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~st~-~VLvmE~i~G~~i~d~~~l~~~-~~d--~~~la~~l~~~~~~qi~-  279 (517)
                      .+|.+.++++.     .|. |..=.+|.+.... -.+||||.+|. +.++-..... ..+  ...+.+..+..++.|++ 
T Consensus        46 ~rEi~iL~~l~-----hpniv~l~~~~~~~~~~~~~lv~e~~~~~-L~~~~~~~~~~~~~~~~~~l~~~~i~~~~~qil~  119 (317)
T cd07868          46 CREIALLRELK-----HPNVISLQKVFLSHADRKVWLLFDYAEHD-LWHIIKFHRASKANKKPVQLPRGMVKSLLYQILD  119 (317)
T ss_pred             HHHHHHHHHCC-----CCCCCCEEEEEEECCCCEEEEEEECCCCC-HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             99999998679-----98998488999707997799999627997-8999987220100157667899999999999999


Q ss_pred             ------HCCEECCCCCCCEEEEE----CCCCEEEEECCHHEECC
Q ss_conf             ------44866178786228980----28953574340312169
Q gi|254780623|r  280 ------RDGFFHADLHPGNLFVD----SKGYIVAVDMGITGRLS  313 (517)
Q Consensus       280 ------~~GfFHaDPHpGNi~v~----~dg~i~~lDfG~vg~l~  313 (517)
                            ..|+.|.|.-|.||++.    ..|++-+.|||....++
T Consensus       120 al~ylH~~~IiHRDlKP~NILi~~~~~~~~~vKi~DFG~a~~~~  163 (317)
T cd07868         120 GIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFN  163 (317)
T ss_pred             HHHHHHHCCEEECCCCCCEEEEECCCCCCCCEEECCCCCCEECC
T ss_conf             99999878966057870207872368877857873565025647


No 221
>cd05061 PTKc_InsR Catalytic Domain of the Protein Tyrosine Kinase, Insulin Receptor. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta
Probab=98.59  E-value=2.8e-07  Score=75.63  Aligned_cols=149  Identities=16%  Similarity=0.200  Sum_probs=91.9

Q ss_pred             HHHHH--HHHHHHHHHHHHHHHEEC---CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf             99867--666778888655550212---8887236876403104688777788999875321146854334691799999
Q gi|254780623|r  120 YCEFD--DPIAAASIAQVHPAVVHD---INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRA  194 (517)
Q Consensus       120 F~~fd--ePlasASiaQVh~A~l~d---~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e  194 (517)
                      ++.++  ++|+.||-|+||+|+.++   +..+.+||||.......                                   
T Consensus         5 ~~~~~l~~~iG~G~fG~Vykg~~~~~~~~~~~~~vAvK~~~~~~~-----------------------------------   49 (288)
T cd05061           5 REKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESAS-----------------------------------   49 (288)
T ss_pred             HHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCC-----------------------------------
T ss_conf             799798339802767299998954776786370899999786558-----------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHH-HHHHCC--------CH
Q ss_conf             99887888655999988987202446776643000010221--78335300247863242677-332002--------25
Q gi|254780623|r  195 LEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEK-LRACGH--------DL  263 (517)
Q Consensus       195 ~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~-l~~~~~--------d~  263 (517)
                          ..++.+|.+|++-+.+++..     .  |-+.|.-.+  ....+||||++|-.+.+.-. .+..+.        ..
T Consensus        50 ----~~~~~~f~~E~~~l~~l~h~-----n--Iv~l~g~~~~~~~~~ivmE~~~~G~L~~~l~~~~~~~~~~~~~~~~~~  118 (288)
T cd05061          50 ----LRERIEFLNEASVMKGFTCH-----H--VVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTL  118 (288)
T ss_pred             ----HHHHHHHHHHHHHHHHCCCC-----C--CCEEEEEEEECCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf             ----67899999999999867999-----8--875999999899679999905899499999872641014667886549


Q ss_pred             H---HHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             6---899999999999897448661787862289802895357434031216989
Q gi|254780623|r  264 E---RLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       264 ~---~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      +   .++..++.. +.-+-..|+.|.|.-|.||+++.++.+-+-|||+...+.+.
T Consensus       119 ~~~~~~~~qia~g-l~yLH~~~IiHRDLKp~NILl~~~~~vKl~DFGls~~~~~~  172 (288)
T cd05061         119 QEMIQMAAEIADG-MAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYET  172 (288)
T ss_pred             HHHHHHHHHHHHH-HHHHHHCCCCCCCCCCCCEEECCCCCEEEEECCCCEECCCC
T ss_conf             9999999999999-99986199554766878478899996899556675066767


No 222
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=98.59  E-value=2.6e-07  Score=75.80  Aligned_cols=130  Identities=15%  Similarity=0.258  Sum_probs=81.4

Q ss_pred             CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             87236876403104688777788999875321146854334691799999998878886559999889872024467766
Q gi|254780623|r  145 GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQG  224 (517)
Q Consensus       145 ~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~  224 (517)
                      .|.+-++|+-||...       +.-+++-.++    ..           .+...+...+|=.++      .+-+.-.++.
T Consensus        53 ~~kkyIlK~~r~~~~-------~~eR~~~sf~----kg-----------~~~~~ll~~~~~~~~------~g~~~~~d~y  104 (232)
T PRK10359         53 DYGKYILKVFAPKVK-------RTERFLKSFV----KG-----------DYYENLIVQTDRVRS------EGLAFLNDFY  104 (232)
T ss_pred             CCCEEEEECCCHHHH-------HHHHHHHHHH----CC-----------HHHHHHHHHHHHHHH------CCCCCCCCHH
T ss_conf             693799956740113-------5899999996----15-----------799999999999887------1523123411


Q ss_pred             CCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEE
Q ss_conf             43000010221783353002478632426773320022568999999999998974486617878622898028953574
Q gi|254780623|r  225 FRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAV  304 (517)
Q Consensus       225 v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~l  304 (517)
                      +.+-+-.--+|....++|||++|..++|.+.+....  ..+     +.....++-..|..|+||||||+.++.+| +-+|
T Consensus       105 l~aekk~~~~i~~s~~l~EYIEG~~l~~~~dI~~~~--k~~-----I~~~I~kLH~~G~~sGD~h~gNFi~t~~g-lrII  176 (232)
T PRK10359        105 LLAERKTLRYAHTYIMLIEYIEGVELNDMPEISEDV--KAK-----IKASIESLHQHGMVSGDPHKGNFIVSKDG-LRII  176 (232)
T ss_pred             EEEEHHHCCEEEEEEEEEEEECCCCCCCHHHCCHHH--HHH-----HHHHHHHHHHCCCCCCCCCCCCEEEECCC-EEEE
T ss_conf             243413155222365564322584456444326668--999-----99999999874762589886647985895-7999


Q ss_pred             ECCHHE
Q ss_conf             340312
Q gi|254780623|r  305 DMGITG  310 (517)
Q Consensus       305 DfG~vg  310 (517)
                      |.-.=+
T Consensus       177 DlsgKk  182 (232)
T PRK10359        177 DLSGKR  182 (232)
T ss_pred             ECCCCC
T ss_conf             887730


No 223
>cd05594 STKc_PKB_alpha STKc_PKB_alpha: Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, r
Probab=98.59  E-value=2.6e-07  Score=75.81  Aligned_cols=133  Identities=17%  Similarity=0.155  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67788886555502128887236876403104688777788999875321146854334691799999998878886559
Q gi|254780623|r  127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR  206 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~  206 (517)
                      |+.||-|+||.|+-+.  +|+.||+|+.+....                .          .     .+-...+      .
T Consensus         3 IG~G~fG~V~l~~~k~--t~~~~AiK~i~k~~~----------------~----------~-----~~~~~~~------~   43 (324)
T cd05594           3 LGKGTFGKVILVKEKA--TGRYYAMKILKKEVI----------------V----------A-----KDEVAHT------L   43 (324)
T ss_pred             EEECCCEEEEEEEECC--CCCEEEEEEEEHHHC----------------C----------C-----HHHHHHH------H
T ss_conf             6617384999999889--998999999827886----------------4----------8-----7999999------9


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH------
Q ss_conf             9998898720244677664300001022178--33530024786324267733200225689999999999989------
Q gi|254780623|r  207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT------  278 (517)
Q Consensus       207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi------  278 (517)
                      +|.+.+...+     +|.|.  +.|..+.++  -.+||||++|-.+.+.  +...+.    +.+..+..|+.|+      
T Consensus        44 ~E~~il~~~~-----Hp~Iv--~l~~~f~~~~~lylVmEy~~gGdL~~~--l~~~~~----~~e~~~~~~~~qi~~aL~y  110 (324)
T cd05594          44 TENRVLQNSR-----HPFLT--ALKYSFQTHDRLCFVMEYANGGELFFH--LSRERV----FSEDRARFYGAEIVSALDY  110 (324)
T ss_pred             HHHHHHHHCC-----CCCEE--EEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCC----CCHHHHHHHHHHHHHHHHH
T ss_conf             9999998689-----99881--799999989999999967799847666--751688----9999999999999999999


Q ss_pred             -H-HCCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             -7-44866178786228980289535743403121
Q gi|254780623|r  279 -L-RDGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       279 -~-~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                       - ..|+.|-|.-|.||+++.+|.+-+.|||.+..
T Consensus       111 LHs~~~IiHRDLKPeNILl~~~g~iKL~DFGlak~  145 (324)
T cd05594         111 LHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKE  145 (324)
T ss_pred             HHHHCCEECCCCCCCCCCCCCCCCEEECCHHHHHH
T ss_conf             99837971143456555647888773122134343


No 224
>cd05083 PTKc_Chk Catalytic Domain of the Protein Tyrosine Kinase, Csk homologous kinase. Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki
Probab=98.59  E-value=4.6e-07  Score=73.88  Aligned_cols=139  Identities=18%  Similarity=0.196  Sum_probs=88.4

Q ss_pred             HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99867--6667788886555502128887236876403104688777788999875321146854334691799999998
Q gi|254780623|r  120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ  197 (517)
Q Consensus       120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~  197 (517)
                      ++.|+  +-|++|+-|.||+|+.+    |++||||+.+.+.                            .    .     
T Consensus         5 ~~~~~l~~~iG~G~fG~Vy~~~~~----g~~vAvK~i~~~~----------------------------~----~-----   43 (254)
T cd05083           5 LQKLTLGEIIGEGEFGAVLQGEYT----GQKVAVKNIKCDV----------------------------T----A-----   43 (254)
T ss_pred             HHHEEEEEEEECCCCCEEEEEEEC----CCEEEEEEECCCC----------------------------C----H-----
T ss_conf             799687459820898189999999----9299999978787----------------------------8----9-----


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHH-HHCCCHH---HHHHHHHHH
Q ss_conf             878886559999889872024467766430000102217833530024786324267733-2002256---899999999
Q gi|254780623|r  198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLR-ACGHDLE---RLSVTLVQS  273 (517)
Q Consensus       198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~-~~~~d~~---~la~~l~~~  273 (517)
                           -+|.+|++.+.+++.-  +.  |.+=.+.  ....-.+||||++|-++.+.-.-. ....+..   +++..++..
T Consensus        44 -----~~f~~E~~~l~~l~Hp--nI--v~~~g~~--~~~~~~iv~Ey~~~GsL~~~L~~~~~~~~~~~~~~~i~~qia~g  112 (254)
T cd05083          44 -----QAFLEETAVMTKLHHK--NL--VRLLGVI--LHNGLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEG  112 (254)
T ss_pred             -----HHHHHHHHHHHHCCCC--CC--CCEEEEE--EECCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             -----9999999999867995--89--9499999--87987999985899969999986699889999999999999999


Q ss_pred             HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             99989744866178786228980289535743403121
Q gi|254780623|r  274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                       +.-+-..|+.|.|.-|.||+++.+|.+-+-|||+...
T Consensus       113 -l~yLH~~~iiHrDLK~~NILi~~~~~~Ki~DFGls~~  149 (254)
T cd05083         113 -MEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLARV  149 (254)
T ss_pred             -HHHHHCCCCCCCCCCCCCEEECCCCCEEEEECCCCEE
T ss_conf             -9998259953560571424388999099941787657


No 225
>cd07844 STKc_PCTAIRE_like The catalytic domain of PCTAIRE-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as 
Probab=98.58  E-value=1.3e-07  Score=78.25  Aligned_cols=132  Identities=22%  Similarity=0.320  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-|+.||-|.||+|.-+.  +|+.||||+.+..-.+                        ...         ...     
T Consensus        11 ~~lG~G~fg~V~~~~~~~--~~~~vAiK~i~~~~~~------------------------~~~---------~~~-----   50 (291)
T cd07844          11 DKLGEGSYATVYKGRSKL--TGQLVALKEIRLEHEE------------------------GAP---------FTA-----   50 (291)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEECCCCC------------------------CCH---------HHH-----
T ss_conf             698228693999999889--9989999998701012------------------------227---------889-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH-----
Q ss_conf             599998898720244677664300001022178--3353002478632426773320022568999999999998-----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH-----  277 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q-----  277 (517)
                       .+|...+..++.     +.  |.+.|.-+-++  -++||||++| .+.+.  +...+   +.+...-+..|+.|     
T Consensus        51 -~rEi~il~~l~h-----~n--Iv~l~~~~~~~~~~~iv~Ey~~~-~L~~~--l~~~~---~~l~~~~i~~~~~Qil~al  116 (291)
T cd07844          51 -IREASLLKDLKH-----AN--IVTLHDIIHTKKTLTLVFEYLDT-DLKQY--MDDCG---GGLSMHNVRLFLFQLLRGL  116 (291)
T ss_pred             -HHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEEECCC-CHHHH--HHHCC---CCCCHHHHHHHHHHHHHHH
T ss_conf             -999999986789-----89--87498888418868999980289-88999--99768---9999999999999999999


Q ss_pred             --HHHCCEECCCCCCCEEEEECCCCEEEEECCHHE
Q ss_conf             --974486617878622898028953574340312
Q gi|254780623|r  278 --TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITG  310 (517)
Q Consensus       278 --i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg  310 (517)
                        +-..|+.|-|.-|.||+++.+|++-+.|||+..
T Consensus       117 ~yLH~~~iiHRDiKP~NILl~~~~~iKl~DFG~s~  151 (291)
T cd07844         117 AYCHQRRVLHRDLKPQNLLISERGELKLADFGLAR  151 (291)
T ss_pred             HHHHHCCEEECCCCHHHEEECCCCCEEECCCCCCH
T ss_conf             99987994667176798688889978864115331


No 226
>cd07845 STKc_CDK10 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10 subfamily. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. C
Probab=98.58  E-value=1.5e-07  Score=77.70  Aligned_cols=139  Identities=18%  Similarity=0.253  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.||-|.||+|+-+.  +|+.||||+.+-.-.    .|                            ......     
T Consensus        13 ~~iG~G~fg~V~~~~~~~--t~~~vAiK~i~~~~~----~~----------------------------~~~~~~-----   53 (309)
T cd07845          13 NRIGEGTYGIVYRARDTR--SGEIVALKKVRMDRE----RD----------------------------GIPISS-----   53 (309)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCC----CC----------------------------HHHHHH-----
T ss_conf             895247281999999889--997999999811004----31----------------------------557889-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC-CCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-----
Q ss_conf             5999988987202446776643000010221-7833530024786324267733200225689999999999989-----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRT-ERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT-----  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s-t~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi-----  278 (517)
                       .+|.+.+..++.    ..-|..=.+|..-. ..-.|||||++| .+.+.  ++...   ..+.+.-+..+++|+     
T Consensus        54 -~rEi~il~~l~H----pnIv~l~~~~~~~~~~~~~lvmE~~~~-~L~~~--l~~~~---~~l~e~~i~~i~~Qll~al~  122 (309)
T cd07845          54 -LREITLLLNLRH----PNIVELKEVVVGKHLDSIFLVMEYCEQ-DLASL--LDNMP---TPFSESQVKCLMLQLLRGLQ  122 (309)
T ss_pred             -HHHHHHHHHCCC----CCCCEEEEEEECCCCCEEEEEEECCCC-CHHHH--HHHCC---CCCCHHHHHHHHHHHHHHHH
T ss_conf             -999999986689----981206889943888879999954898-87999--98568---99999999999999999999


Q ss_pred             --HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             --74486617878622898028953574340312169
Q gi|254780623|r  279 --LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       279 --~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                        -..|+.|-|.-|.||+++.+|.+-+.|||+...++
T Consensus       123 yLH~~~IiHRDiKPeNILl~~~~~vKl~DFGla~~~~  159 (309)
T cd07845         123 YLHENFIIHRDLKVSNLLLTDKGCLKIADFGLARTFG  159 (309)
T ss_pred             HHHHCCCEECCCCHHHEEECCCCCEEEEECCCHHHCC
T ss_conf             9987894668688233678799988997423122236


No 227
>cd05620 STKc_nPKC_delta STKc_nPKC_delta: Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhanc
Probab=98.58  E-value=2.4e-07  Score=76.11  Aligned_cols=137  Identities=20%  Similarity=0.272  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67788886555502128887236876403104688777788999875321146854334691799999998878886559
Q gi|254780623|r  127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR  206 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~  206 (517)
                      |++||-|.||.|+.+.  +|+.||||+.+....                .   ..           ++.. ..      .
T Consensus         3 lG~G~fG~V~la~~~~--tg~~~AiK~i~k~~~----------------~---~~-----------~~~~-~~------~   43 (316)
T cd05620           3 LGKGSFGKVLLAELKG--KGEYFAVKALKKDVV----------------L---ID-----------DDVE-CT------M   43 (316)
T ss_pred             EEECCCEEEEEEEECC--CCCEEEEEEECHHHC----------------C---CC-----------HHHH-HH------H
T ss_conf             8528794999999999--998999999836662----------------4---60-----------5799-99------9


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHC-CCH---HHHHHHHHHHHHHHHHH
Q ss_conf             99988987202446776643000010221783--3530024786324267733200-225---68999999999998974
Q gi|254780623|r  207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACG-HDL---ERLSVTLVQSFLLHTLR  280 (517)
Q Consensus       207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~-~d~---~~la~~l~~~~~~qi~~  280 (517)
                      .|.+.+...    .+++.  |.+.|..+.+++  .|||||++|-.+.+.  +...+ .+.   ..++..++.+ +.-+-.
T Consensus        44 ~e~~il~~~----~~hp~--Iv~l~~~f~~~~~lylvmEy~~gGdL~~~--l~~~~~~~e~~~~~~~~qi~~a-L~yLH~  114 (316)
T cd05620          44 VEKRVLALA----WENPF--LTHLYCTFQTKEHLFFVMEFLNGGDLMFH--IQDKGRFDLYRATFYAAEIVCG-LQFLHS  114 (316)
T ss_pred             HHHHHHHHH----CCCCC--EEEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHHH
T ss_conf             999999985----79996--82699999989999999976799888787--8744999999999999999999-999997


Q ss_pred             CCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             4866178786228980289535743403121
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                      .|+.|-|.-|.||+++.+|.+-+.|||+...
T Consensus       115 ~~IiHRDlKPeNILl~~~g~iKL~DFGlak~  145 (316)
T cd05620         115 KGIIYRDLKLDNVMLDRDGHIKIADFGMCKE  145 (316)
T ss_pred             CCCEECCCCCCCCCCCCCCCEEEEECCEEHH
T ss_conf             8905230376555505899789832140000


No 228
>cd05578 STKc_Yank1 STKc_Yank1: Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.
Probab=98.58  E-value=7.8e-08  Score=79.90  Aligned_cols=139  Identities=15%  Similarity=0.221  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.||.|+-|.||+|+-+.  +|+.||||+....-                .          .+ ..    ....      
T Consensus         6 ~~iG~G~fg~Vy~~~~~~--t~~~~AvK~i~~~~----------------~----------~~-~~----~~~~------   46 (258)
T cd05578           6 RVIGKGSFGKVCIVQKRD--TKKMFAMKYMNKQK----------------C----------VE-KG----SVRN------   46 (258)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECHHH----------------C----------CC-HH----HHHH------
T ss_conf             598228895999999889--99899999981788----------------6----------69-89----9999------


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH----
Q ss_conf             5999988987202446776643000010221783--3530024786324267733200225689999999999989----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT----  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi----  278 (517)
                      +.+|.+-+.++.     .|.  |.+.|..+.+++  .+||||++|-.+.+.  +...+    .+.+.-+..|+.|+    
T Consensus        47 ~~~Ei~~l~~l~-----Hpn--Iv~~~~~~~~~~~~~ivmEy~~~g~L~~~--l~~~~----~~~e~~~~~~~~Qi~~aL  113 (258)
T cd05578          47 VLNELQILQSLE-----HPF--LVNLWYSFQDEEDMYLVVDLLLGGDLRYH--LQQKV----KFSEEQVKFYVCEIVLAL  113 (258)
T ss_pred             HHHHHHHHHHCC-----CCC--CCCEEEEEEECCEEEEEEECCCCCCHHHH--HHHCC----CCCHHHHHHHHHHHHHHH
T ss_conf             999999998779-----989--89589999989999999958699858999--98759----999999999999999999


Q ss_pred             ---HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             ---7448661787862289802895357434031216989
Q gi|254780623|r  279 ---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       279 ---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                         -..|+.|-|.-|.||+++.+|.+.+.|||+...+++.
T Consensus       114 ~ylH~~~IiHRDIKpeNILl~~~g~vkl~DFG~a~~~~~~  153 (258)
T cd05578         114 EYLHSKGIIHRDIKPDNILLDEQGHAHLTDFNIATKLTPD  153 (258)
T ss_pred             HHHHHCCEEECCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf             9998789440457757778989998999448888676899


No 229
>cd07871 STKc_PCTAIRE3 The catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical fila
Probab=98.58  E-value=2.8e-07  Score=75.54  Aligned_cols=136  Identities=19%  Similarity=0.278  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-|+.||-|.||+|+-+.  +|+.||||+.+..-.                     . .           ..      ..
T Consensus        11 ~~iG~G~fg~V~~~~~~~--t~~~vAiK~i~~~~~---------------------~-~-----------~~------~~   49 (288)
T cd07871          11 DKLGEGTYATVFKGRSKL--TENLVALKEIRLEHE---------------------E-G-----------AP------CT   49 (288)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHHC---------------------C-C-----------HH------HH
T ss_conf             187048692999999889--998999999834322---------------------3-0-----------38------99


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHC--CCH---HHHHHHHHHHHHHH
Q ss_conf             599998898720244677664300001022178--33530024786324267733200--225---68999999999998
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACG--HDL---ERLSVTLVQSFLLH  277 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~--~d~---~~la~~l~~~~~~q  277 (517)
                      ..+|.+.+..++.     |.  |-+.|.-+.++  -.+||||++| .+.+.  ++..+  .+.   +.++..++.+ +.-
T Consensus        50 ~~~Ei~il~~l~H-----pn--Iv~l~~~~~~~~~~~lv~E~~~~-~l~~~--l~~~~~~~~~~~~~~~~~qil~a-l~y  118 (288)
T cd07871          50 AIREVSLLKNLKH-----AN--IVTLHDIIHTERCLTLVFEYLDS-DLKQY--LDNCGNLMSMHNVKIFMFQLLRG-LSY  118 (288)
T ss_pred             HHHHHHHHHHCCC-----CC--EEEEEEEECCCCEEEEEEECCCC-HHHHH--HHHCCCCCCHHHHHHHHHHHHHH-HHH
T ss_conf             9999999986789-----99--72241113479868999966760-59999--98648989999999999999999-999


Q ss_pred             HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC
Q ss_conf             97448661787862289802895357434031216
Q gi|254780623|r  278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL  312 (517)
Q Consensus       278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l  312 (517)
                      +-..|+.|-|.-|.||+++.+|.+-+.|||+....
T Consensus       119 lH~~~IiHRDiKPeNILi~~~~~vKl~DFGla~~~  153 (288)
T cd07871         119 CHKRKILHRDLKPQNLLINEKGELKLADFGLARAK  153 (288)
T ss_pred             HHHCCEEEEECCCHHEEECCCCCEEEEEECCCCCC
T ss_conf             98789277124502147879997899173555016


No 230
>cd05054 PTKc_VEGFR Catalytic Domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto
Probab=98.58  E-value=3.3e-07  Score=75.03  Aligned_cols=34  Identities=18%  Similarity=0.389  Sum_probs=30.2

Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC
Q ss_conf             7448661787862289802895357434031216
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL  312 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l  312 (517)
                      -..|+.|.|.-|.||+++.++.+-+-|||+...+
T Consensus       190 H~~~iiHRDLK~~NiLl~~~~~vKi~DFGlar~~  223 (337)
T cd05054         190 ASRKCIHRDLAARNILLSENNVVKICDFGLARDI  223 (337)
T ss_pred             HHCCEECCCCCHHHEEECCCCCEEEEECCCCCCC
T ss_conf             7689134636589877888998999726353026


No 231
>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like orphan receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer
Probab=98.57  E-value=2.6e-07  Score=75.86  Aligned_cols=146  Identities=14%  Similarity=0.190  Sum_probs=90.3

Q ss_pred             HHHHH--HHHHHHHHHHHHHHHEEC---CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf             99867--666778888655550212---8887236876403104688777788999875321146854334691799999
Q gi|254780623|r  120 YCEFD--DPIAAASIAQVHPAVVHD---INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRA  194 (517)
Q Consensus       120 F~~fd--ePlasASiaQVh~A~l~d---~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e  194 (517)
                      |+.++  |.|+.||.|.||+|++..   ...+..||||+.+....                     +        ...  
T Consensus         4 ~~~~~~~e~IG~G~fG~Vykg~~~~~~~~~~~~~VaiK~l~~~~~---------------------~--------~~~--   52 (283)
T cd05048           4 LSAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAE---------------------P--------KVQ--   52 (283)
T ss_pred             HHHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCC---------------------H--------HHH--
T ss_conf             799898369715888389999983788760677999999883269---------------------7--------899--


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC---CCEEEEECCCCCCCCHHHHHH--------------
Q ss_conf             998878886559999889872024467766430000102217---833530024786324267733--------------
Q gi|254780623|r  195 LEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE---RDVITMEWIDGVKISDTEKLR--------------  257 (517)
Q Consensus       195 ~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st---~~VLvmE~i~G~~i~d~~~l~--------------  257 (517)
                              -+|.+|+..+.+++.     |.|  =+.|. .|+   ...+||||++|-.+.+.-..+              
T Consensus        53 --------~~f~~E~~~l~~l~H-----pnI--v~~~g-~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~  116 (283)
T cd05048          53 --------QEFRQEAELMSDLQH-----PNI--VCLLG-VCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDET  116 (283)
T ss_pred             --------HHHHHHHHHHHHCCC-----CCE--EEEEE-EEEECCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             --------999999999985899-----897--31889-99668866999991699908999986187642111123333


Q ss_pred             -HHCCCH---HHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             -200225---68999999999998974486617878622898028953574340312169
Q gi|254780623|r  258 -ACGHDL---ERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       258 -~~~~d~---~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                       ....+.   -.++..++.+. .-+-..|+.|.|.-|.||+++.++.+-+-|||+...+.
T Consensus       117 ~~~~l~~~~~~~i~~~ia~gl-~yLH~~~IvHrDlK~~NILl~~~~~~Ki~DFGla~~~~  175 (283)
T cd05048         117 VKSSLDCSDFLHIAIQIAAGM-EYLSSHHFVHRDLAARNCLVGEGLTVKISDFGLSRDIY  175 (283)
T ss_pred             CCCCCCHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCC
T ss_conf             357799999999999999999-99986890777556175898899938998604750567


No 232
>cd07855 STKc_ERK5 The catalytic domain of the Serine/Threonine Kinase,  Extracellular signal-Regulated Kinase 5 subfamily. Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphory
Probab=98.56  E-value=8.2e-08  Score=79.71  Aligned_cols=142  Identities=19%  Similarity=0.263  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.||.||-|+||+|+-+.  +|+.||||+..-...                            ..    .....+.    
T Consensus        11 ~~iG~G~fg~V~~a~~~~--t~~~vAiK~i~~~~~----------------------------~~----~~~~~~~----   52 (336)
T cd07855          11 ETIGNGAYGVVCSAIDKK--TGQKVAIKKIPNAFD----------------------------VL----TTAKRTL----   52 (336)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECCHHC----------------------------CH----HHHHHHH----
T ss_conf             798225087999999899--998999999894002----------------------------46----7899999----


Q ss_pred             HHHHHHHHHHHHC-CCCCCCCCC-CHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH----
Q ss_conf             5999988987202-446776643-0000102217833530024786324267733200225689999999999989----
Q gi|254780623|r  205 LRLEAAAFSEMAE-NTVKDQGFR-VPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT----  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~-~~~~~~~v~-vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi----  278 (517)
                        +|.+-+..+.. |.-....+. .+..+.+ ...-.+||||++| .+.+.  +...    ..+.+.-+..|++|+    
T Consensus        53 --rEi~il~~l~HpnIv~l~~~~~~~~~~~~-~~~~yivmE~~~~-~L~~~--i~~~----~~l~e~~i~~~~~Qll~aL  122 (336)
T cd07855          53 --RELKILKHFKHDNIIAIKEILRPPVPTAD-FKDVYVVLDLMES-DLHHI--IHSD----QPLTLEHVRYFLYQLLRGL  122 (336)
T ss_pred             --HHHHHHHHCCCCCEEEEEEEEECCCCCCC-CCEEEEEEECCCC-CHHHH--HHHC----CCCCHHHHHHHHHHHHHHH
T ss_conf             --99999986689998538888712665456-7658999972697-26999--9858----9999999999999999999


Q ss_pred             ---HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             ---744866178786228980289535743403121698
Q gi|254780623|r  279 ---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       279 ---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                         -..|+.|.|.-|.||+++.++++-+.|||+...++.
T Consensus       123 ~ylH~~gIiHRDlKPeNILl~~~~~iKl~DFGla~~l~~  161 (336)
T cd07855         123 KYIHSANVLHRDLKPSNLLVNENCELKIGDFGMARGLSS  161 (336)
T ss_pred             HHHHHCCCEECCCCHHHEEECCCCCEEECEECCCEECCC
T ss_conf             999888941233654776986999888363110000136


No 233
>cd06647 STKc_PAK_I Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include
Probab=98.56  E-value=2.1e-07  Score=76.51  Aligned_cols=139  Identities=16%  Similarity=0.219  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.||-|.||+|+-..  +|+.||||+..-.                    . .+.          .   ..      
T Consensus        25 ~~iG~G~fg~Vy~a~~~~--tg~~vAiK~i~~~--------------------~-~~~----------~---~~------   62 (293)
T cd06647          25 EKIGQGASGTVYTAIDVA--TGQEVAIKQMNLQ--------------------Q-QPK----------K---EL------   62 (293)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEEHH--------------------C-CCH----------H---HH------
T ss_conf             897048680999999889--9989999998820--------------------0-753----------8---99------


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHHHHHHHHH
Q ss_conf             599998898720244677664300001022178--3353002478632426773320022568---99999999999897
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQSFLLHTL  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~~~~~qi~  279 (517)
                      +.+|+..+.+++.     |.  |-+.|..+.+.  -.+||||++|-.+.+.-  .....+-..   ++..++.+ +.-+-
T Consensus        63 ~~~Ei~il~~l~H-----pn--Iv~~~~~~~~~~~~~ivmEy~~gg~L~~~i--~~~~l~e~~~~~i~~qil~a-L~ylH  132 (293)
T cd06647          63 IINEILVMRENKH-----PN--IVNYLDSYLVGDELWVVMEYLAGGSLTDVV--TETCMDEGQIAAVCRECLQA-LEFLH  132 (293)
T ss_pred             HHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHHH--HHCCCCHHHHHHHHHHHHHH-HHHHH
T ss_conf             9999999986799-----89--990999999899999999678989289998--70699999999999999999-99999


Q ss_pred             HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             448661787862289802895357434031216989
Q gi|254780623|r  280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      ..|+.|-|.-|.||+++.+|.+-+.|||+...+.+.
T Consensus       133 ~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~  168 (293)
T cd06647         133 SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE  168 (293)
T ss_pred             HCCCEECCCCHHHEEECCCCCEEEECCCCCEECCCC
T ss_conf             789354668768878999999999828887677688


No 234
>cd05053 PTKc_FGFR Catalytic Domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, 
Probab=98.56  E-value=3e-07  Score=75.35  Aligned_cols=154  Identities=16%  Similarity=0.186  Sum_probs=90.1

Q ss_pred             CHHHHHHHHH--HHHHHHHHHHHHHHHEEC----CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf             8999999867--666778888655550212----8887236876403104688777788999875321146854334691
Q gi|254780623|r  115 PIEELYCEFD--DPIAAASIAQVHPAVVHD----INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCF  188 (517)
Q Consensus       115 ~~~~~F~~fd--ePlasASiaQVh~A~l~d----~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~  188 (517)
                      .|+--.+.|+  +.|++||-|+||+|+...    ..++..||||+.++...+   .++                      
T Consensus         6 ~~~i~~~~~~l~~~LG~G~fG~Vyk~~~~~~~~~~~~~~~vAvK~l~~~~~~---~~~----------------------   60 (294)
T cd05053           6 EWELPRDRLTLGKPLGEGAFGQVVKAEAVGLPNRQNEETTVAVKMLKEDATE---KDL----------------------   60 (294)
T ss_pred             CCCCCHHHEEECCEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCH---HHH----------------------
T ss_conf             6741489928726893077829999998477775778679999998877797---999----------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHH--------
Q ss_conf             7999999988788865599998898720244677664300001022--178335300247863242677332--------
Q gi|254780623|r  189 SAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRA--------  258 (517)
Q Consensus       189 ~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~--------  258 (517)
                                    -+|.+|++-+.++.+    .+.| | +.|.-.  ...-.+||||++|-.+.+.-.-..        
T Consensus        61 --------------~~~~~E~~~l~~l~~----HpnI-v-~~~g~~~~~~~~~iv~Ey~~~GsL~~~l~~~~~~~~~~~~  120 (294)
T cd05053          61 --------------SDLVSEMEVMKMIGK----HKNI-I-NLLGCCTQGGPLYVVVEYAAHGNLRDFLRARRPPGEYASS  120 (294)
T ss_pred             --------------HHHHHHHHHHHHHCC----CCCE-E-EEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCCCC
T ss_conf             --------------999999999987348----9868-8-7878980599889999817999499999861875200122


Q ss_pred             -------HCCCHH---HHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             -------002256---89999999999989744866178786228980289535743403121698
Q gi|254780623|r  259 -------CGHDLE---RLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       259 -------~~~d~~---~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                             ......   .++..++.+ +.-+-..|+.|-|.-|.||+++.++.+-+.|||+...+..
T Consensus       121 ~~~~~~~~~l~~~~~~~~~~qia~g-l~yLH~~~IvHRDlKp~NILl~~~~~~Kl~DFGls~~~~~  185 (294)
T cd05053         121 DDPRPPEETLTQKDLVSFAYQVARG-MEYLASKKCIHRDLAARNVLVTEGYVMKIADFGLARDIHD  185 (294)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCC
T ss_conf             2233433577999999999999999-9999848996776770207888999499975787536788


No 235
>cd05055 PTKc_PDGFR Catalytic Domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept
Probab=98.56  E-value=1.5e-07  Score=77.61  Aligned_cols=152  Identities=15%  Similarity=0.152  Sum_probs=92.9

Q ss_pred             HHHHHHHHH--HHHHHHHHHHHHHHHEEC---CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf             999999867--666778888655550212---888723687640310468877778899987532114685433469179
Q gi|254780623|r  116 IEELYCEFD--DPIAAASIAQVHPAVVHD---INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSA  190 (517)
Q Consensus       116 ~~~~F~~fd--ePlasASiaQVh~A~l~d---~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~  190 (517)
                      ||--+..|+  +-|+.||-|.||+|+.+.   .....+||||+.++....                              
T Consensus        30 wei~~~~l~~~~~lG~G~fG~Vy~a~~~g~~~~~~~~~VAvK~l~~~~~~------------------------------   79 (302)
T cd05055          30 WEFPRNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHS------------------------------   79 (302)
T ss_pred             CCCCHHHEEECCEECCCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCCH------------------------------
T ss_conf             10778990882498117771999989907888783279999995787997------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHH-CCCHH---H
Q ss_conf             9999998878886559999889872024467766-43000010221783353002478632426773320-02256---8
Q gi|254780623|r  191 VVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQG-FRVPKIDWNRTERDVITMEWIDGVKISDTEKLRAC-GHDLE---R  265 (517)
Q Consensus       191 ~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~-~~d~~---~  265 (517)
                               .+.-.|.+|++-+.++.+    .|. |.+=.++. ....-.|||||++|-++.+.-.-+.. ....+   .
T Consensus        80 ---------~~~~~f~~Ei~il~~L~~----HpNIV~l~g~~~-~~~~~~iV~Ey~~~GsL~~~L~~~~~~~l~~~~~~~  145 (302)
T cd05055          80 ---------SEREALMSELKIMSHLGN----HENIVNLLGACT-IGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLS  145 (302)
T ss_pred             ---------HHHHHHHHHHHHHHHCCC----CCCEEEEEEEEE-ECCEEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHH
T ss_conf             ---------999999999999974679----999808999999-899999999868999689999757888899999999


Q ss_pred             HHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC
Q ss_conf             99999999999897448661787862289802895357434031216
Q gi|254780623|r  266 LSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL  312 (517)
Q Consensus       266 la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l  312 (517)
                      ++..++.+. .-+-..|+.|.|.-|.|++++.++.+-+-|||+...+
T Consensus       146 i~~qia~gl-~yLH~~~iiHRDLK~~NILl~~~~~~Ki~DFGla~~~  191 (302)
T cd05055         146 FSYQVAKGM-AFLASKNCIHRDLAARNVLLTHGKIVKICDFGLARDI  191 (302)
T ss_pred             HHHHHHHHH-HHHHHCCCCCCCCCCCCEEECCCCCEEEEECCCCEEC
T ss_conf             999999999-9997689477746502233668995786025762133


No 236
>cd07832 STKc_CCRK The catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase subfamily. Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the deve
Probab=98.55  E-value=6.8e-08  Score=80.36  Aligned_cols=140  Identities=21%  Similarity=0.268  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +=|+.||-|.||+|.-+.  +|+.||||+.+..-..                    .            +....+.    
T Consensus         6 ~~iG~G~fg~V~~~~d~~--t~~~vAiK~i~~~~~~--------------------~------------~~~~~~~----   47 (286)
T cd07832           6 GRIGEGAHGIVFKAKHLE--TGETVALKKIHLRRLE--------------------G------------GIPNAAL----   47 (286)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHHCC--------------------C------------HHHHHHH----
T ss_conf             286325084999999889--9989999998133448--------------------4------------7899999----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH------
Q ss_conf             59999889872024467766430000102217833530024786324267733200225689999999999989------
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT------  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi------  278 (517)
                        +|...+...+.    ..-+.+=.+|. ..+.-.+||||+.| .+.+.  +...+   +.+.+..+..|++|+      
T Consensus        48 --~Ei~~l~~l~h----pnIi~~~~~~~-~~~~~~iVmE~~~~-~L~~~--l~~~~---~~~~~~~i~~~~~qil~aL~y  114 (286)
T cd07832          48 --REIKALQACQH----PNIVKLLDVFP-HGSGFVLVMEYMPS-DLSEV--LRDSE---RPLPEAQVKSYMRMLLKGLAH  114 (286)
T ss_pred             --HHHHHHHHCCC----CCCCEEEEEEE-ECCEEEEEEECCCC-CHHHH--HHHCC---CCCCHHHHHHHHHHHHHHHHH
T ss_conf             --99999986799----99892999999-89999999848999-88999--98659---998999999999999999999


Q ss_pred             -HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             -7448661787862289802895357434031216989
Q gi|254780623|r  279 -LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       279 -~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                       -..|+.|.|.-|.||+++.+|.+-+.|||....+++.
T Consensus       115 LH~~~IiHrDiKPeNIll~~~~~vKL~DFG~a~~~~~~  152 (286)
T cd07832         115 MHALGIMHRDLKPANLLISADGVLKIADFGLARLLSEE  152 (286)
T ss_pred             HHHCCEEECCCCHHHEEECCCCCEEEECCCCCEECCCC
T ss_conf             99899577758768779869998898016645135788


No 237
>cd07869 STKc_PFTAIRE1 The catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase. Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D
Probab=98.55  E-value=2.7e-07  Score=75.65  Aligned_cols=134  Identities=19%  Similarity=0.206  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|++||-|+||+|+-+.  +|+.||||+.+..-.                  .    .   ..        ...     
T Consensus        11 ~~iG~G~fg~V~~a~~~~--tg~~vAiK~i~~~~~------------------~----~---~~--------~~~-----   50 (303)
T cd07869          11 EKLGEGSYATVYKGKSKV--NGKLVALKVIRLQEE------------------E----G---TP--------FTA-----   50 (303)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHHH------------------C----C---CH--------HHH-----
T ss_conf             188238794999999889--997999999834461------------------3----4---68--------899-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH----
Q ss_conf             59999889872024467766430000102217--833530024786324267733200225689999999999989----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT----  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi----  278 (517)
                       .+|++-+..+..     |.|  -+.|.-+.+  .-.+||||++|--...+.. ...+....     -+..++.|+    
T Consensus        51 -~rEi~il~~l~H-----pnI--v~l~~~~~~~~~~~lv~Ey~~~~l~~~~~~-~~~~l~~~-----~~~~~~~qll~~l  116 (303)
T cd07869          51 -IREASLLKGLKH-----ANI--VLLHDIIHTKETLTLVFEYVHTDLCQYMDK-HPGGLHPE-----NVKLFLFQLLRGL  116 (303)
T ss_pred             -HHHHHHHHHCCC-----CCE--EEEEEEECCCCEEEEEEECCCCHHHHHHHH-CCCCCCHH-----HHHHHHHHHHHHH
T ss_conf             -999999986799-----898--279888725985899996366138999996-56999999-----9999999999999


Q ss_pred             ---HHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC
Q ss_conf             ---7448661787862289802895357434031216
Q gi|254780623|r  279 ---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL  312 (517)
Q Consensus       279 ---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l  312 (517)
                         -..|+.|-|.-|.||+++.+|.+-+.|||+....
T Consensus       117 ~ylH~~~IiHRDlKp~NILl~~~~~vKi~DFGla~~~  153 (303)
T cd07869         117 SYIHQRYILHRDLKPQNLLISDTGELKLADFGLARAK  153 (303)
T ss_pred             HHHHHCCCEEEECCHHHEEECCCCCEEEEECCCCCCC
T ss_conf             9998789168666756579889998999774652316


No 238
>cd05040 PTKc_Ack_like Catalytic Domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase. Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and
Probab=98.55  E-value=4.3e-07  Score=74.16  Aligned_cols=142  Identities=18%  Similarity=0.202  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCC--EEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872--3687640310468877778899987532114685433469179999999887888
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYR--KVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME  202 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~--~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E  202 (517)
                      |+|+.|+-|.||+|++++.+ |+  +||||+.++.-..                             +          .+
T Consensus         1 ~~iG~G~fg~Vy~~~~~~~~-~~~~~VAvK~~~~~~~~-----------------------------~----------~~   40 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSG-GKVIPVAVKCLKSDKLS-----------------------------D----------IM   40 (257)
T ss_pred             CCCCCCCCCEEEEEEEECCC-CEEEEEEEEEECHHCCH-----------------------------H----------HH
T ss_conf             96955888789999997899-98989999998810054-----------------------------5----------89


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCC-CCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHC-CCHH---HHHHHHHHHHHHH
Q ss_conf             65599998898720244677664-30000102217833530024786324267733200-2256---8999999999998
Q gi|254780623|r  203 MDLRLEAAAFSEMAENTVKDQGF-RVPKIDWNRTERDVITMEWIDGVKISDTEKLRACG-HDLE---RLSVTLVQSFLLH  277 (517)
Q Consensus       203 lD~~~Ea~n~~~~~~~~~~~~~v-~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~-~d~~---~la~~l~~~~~~q  277 (517)
                      -+|.+|+.-+.+++.     |.| .+=.++.  +.+-.+||||++|-++.+.-.....+ ....   .++..++++. .-
T Consensus        41 ~~f~~E~~il~~l~H-----pnIv~l~g~~~--~~~~~iv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~~qia~aL-~y  112 (257)
T cd05040          41 DDFLKEAAIMHSLDH-----ENLIRLYGVVL--THPLMMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGM-RY  112 (257)
T ss_pred             HHHHHHHHHHHHCCC-----CCEEEEEEEEE--CCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHH-HH
T ss_conf             999999999986899-----89820889997--39789999868899999999744788889999999999999999-99


Q ss_pred             HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             9744866178786228980289535743403121698
Q gi|254780623|r  278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      +-..|+.|.|.-|.||+++.++++-+-|||+...++.
T Consensus       113 LH~~~ivHrDlKp~NiLl~~~~~~Kl~DFG~a~~~~~  149 (257)
T cd05040         113 LESKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQ  149 (257)
T ss_pred             HHHCCCCCCCCCCCCEEECCCCCEEEEECHHHCCCCC
T ss_conf             8528964574571206786899589811411101678


No 239
>cd05089 PTKc_Tie1 Catalytic Domain of the Protein Tyrosine Kinase, Tie1. Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.
Probab=98.55  E-value=5.8e-07  Score=73.12  Aligned_cols=142  Identities=15%  Similarity=0.160  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             67666778888655550212888723687640310468877778899987532114685433469179999999887888
Q gi|254780623|r  123 FDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME  202 (517)
Q Consensus       123 fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E  202 (517)
                      |++.|++|+-|+||+|+++.......||||+.+....+.                                       ..
T Consensus         6 ~~~~IG~G~fG~Vyk~~~~~~g~~~~vavK~~~~~~~~~---------------------------------------~~   46 (297)
T cd05089           6 FEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASEN---------------------------------------DH   46 (297)
T ss_pred             EEEEEEECCCCEEEEEEEECCCEEEEEEEEEECCCCCHH---------------------------------------HH
T ss_conf             986995178959999999379809999999977335847---------------------------------------89


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHH---------------HCCCHH-
Q ss_conf             655999988987202446776643000010221--78335300247863242677332---------------002256-
Q gi|254780623|r  203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRA---------------CGHDLE-  264 (517)
Q Consensus       203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~---------------~~~d~~-  264 (517)
                      -+|.+|++.+.++.+    .|.|  =+.|.-+.  +.-.|||||++|-.+.+.-.-..               .....+ 
T Consensus        47 ~~~~~E~~il~~l~~----HpnI--V~l~g~~~~~~~~~iV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~  120 (297)
T cd05089          47 RDFAGELEVLCKLGH----HPNI--INLLGACENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQ  120 (297)
T ss_pred             HHHHHHHHHHHHHCC----CCCE--EEEEEEECCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCHHHHHCCCCCCCCHHH
T ss_conf             999999999987128----9988--8886798239878999970599879999973565544610222036657789999


Q ss_pred             --HHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHE
Q ss_conf             --8999999999998974486617878622898028953574340312
Q gi|254780623|r  265 --RLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITG  310 (517)
Q Consensus       265 --~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg  310 (517)
                        .++..++.. +.-+-..|+.|-|.-|.||+++.++.+-+-|||+..
T Consensus       121 ~l~i~~qia~g-l~yLH~~~IiHRDLKp~NILl~~~~~~KI~DFGls~  167 (297)
T cd05089         121 LLQFASDVATG-MQYLSEKQFIHRDLAARNVLVGENLASKIADFGLSR  167 (297)
T ss_pred             HHHHHHHHHHH-HHHHHCCCCCCCCCCHHEEEECCCCCEEEEECCCCC
T ss_conf             99999999999-998840991557566422899899988980156786


No 240
>cd07874 STKc_JNK3 The catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, s
Probab=98.55  E-value=8.7e-08  Score=79.51  Aligned_cols=152  Identities=19%  Similarity=0.243  Sum_probs=83.0

Q ss_pred             HHHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf             999867--666778888655550212888723687640310468877778899987532114685433469179999999
Q gi|254780623|r  119 LYCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALE  196 (517)
Q Consensus       119 ~F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~  196 (517)
                      +...++  +.|+.||-|+||+|+-+  .+|+.||||+.+....+.-                                ..
T Consensus        15 v~~RY~i~~~LG~G~fG~V~~a~d~--~t~~~vAiK~i~~~~~~~~--------------------------------~~   60 (355)
T cd07874          15 VLKRYQNLKPIGSGAQGIVCAAYDA--VLDRNVAIKKLSRPFQNQT--------------------------------HA   60 (355)
T ss_pred             HHHCEEEEEEEECCCCEEEEEEEEC--CCCCEEEEEEECHHHCCHH--------------------------------HH
T ss_conf             2016188169521618499999988--9998999999892454979--------------------------------99


Q ss_pred             HHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHH
Q ss_conf             887888655999988987202-446776643000010221783353002478632426773320022568---9999999
Q gi|254780623|r  197 QVTKMEMDLRLEAAAFSEMAE-NTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQ  272 (517)
Q Consensus       197 ~~l~~ElD~~~Ea~n~~~~~~-~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~  272 (517)
                      ..+.      +|..-++.+.. |.-..-++..|+-..+....-.+||||++|-- .+.  + ....+...   +...++.
T Consensus        61 ~~~~------rEi~il~~l~hpnIV~~~~~f~~~~~~~~~~~~yivmE~~~~~l-~~~--~-~~~l~~~~i~~i~~qil~  130 (355)
T cd07874          61 KRAY------RELVLMKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMDANL-CQV--I-QMELDHERMSYLLYQMLC  130 (355)
T ss_pred             HHHH------HHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCH-HHH--H-HHCCCHHHHHHHHHHHHH
T ss_conf             9999------99999986799698919899841774211561799997059988-999--8-734999999999999999


Q ss_pred             HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             9999897448661787862289802895357434031216989
Q gi|254780623|r  273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      + +.-+-..|+.|.|.-|.||+++.+|.+-++|||....++..
T Consensus       131 g-L~ylH~~gIiHRDLKPeNILl~~~~~vKl~DFGlA~~~~~~  172 (355)
T cd07874         131 G-IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTS  172 (355)
T ss_pred             H-HHHHHHCCCEECCCCHHHEEECCCCCEECCCCCCCCCCCCC
T ss_conf             9-99998798253248778867868997401454402234787


No 241
>cd05592 STKc_nPKC_theta_delta STKc_nPKC_theta_delta: Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-del
Probab=98.55  E-value=3.6e-07  Score=74.72  Aligned_cols=137  Identities=18%  Similarity=0.263  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67788886555502128887236876403104688777788999875321146854334691799999998878886559
Q gi|254780623|r  127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR  206 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~  206 (517)
                      |+.||-|.||.|+.+.  +|+.||||+.+....  ++.+                            +... .      .
T Consensus         3 lG~G~fG~V~la~~~~--t~~~~AiK~i~k~~~--~~~~----------------------------~~~~-~------~   43 (316)
T cd05592           3 LGKGSFGKVMLAELKG--TNEYYAIKALKKDVV--LEDD----------------------------DVEC-T------M   43 (316)
T ss_pred             EEECCCEEEEEEEECC--CCCEEEEEEECHHHC--CCCH----------------------------HHHH-H------H
T ss_conf             6638893999999999--998999999827882--3714----------------------------7999-9------9


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHC-CCH---HHHHHHHHHHHHHHHHH
Q ss_conf             99988987202446776643000010221783--3530024786324267733200-225---68999999999998974
Q gi|254780623|r  207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACG-HDL---ERLSVTLVQSFLLHTLR  280 (517)
Q Consensus       207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~-~d~---~~la~~l~~~~~~qi~~  280 (517)
                      .|...+..   .. +.|.  |.+.|..+.++.  .|||||++|-.+.+.  +...+ .+-   ..++..++.+ +.-+-.
T Consensus        44 ~e~~il~~---~~-~hp~--Iv~l~~~f~~~~~~ylvmEy~~gGdL~~~--l~~~~~l~e~~a~~~~~qi~~a-L~yLH~  114 (316)
T cd05592          44 VERRVLIL---AW-EHPF--LTHLFCTFQTKEHLFFVMEYLNGGDLMFH--IQSSGRFDEARARFYAAEIICG-LQFLHK  114 (316)
T ss_pred             HHHHHHHH---HC-CCCC--EEEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHHH
T ss_conf             99999998---47-9997--86699999989999999967899888999--8655999999999999999999-999997


Q ss_pred             CCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             4866178786228980289535743403121
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                      .|+.|-|.-|.||+++.+|.+-+.|||+...
T Consensus       115 ~~IiHRDlKPeNILld~~g~vKL~DFGlak~  145 (316)
T cd05592         115 KGIIYRDLKLDNVLLDRDGHIKIADFGMCKE  145 (316)
T ss_pred             CCCEEEECCCCCCCCCCCCCEEEEECCCCCC
T ss_conf             8905311477665737899889820563300


No 242
>cd07877 STKc_p38alpha_MAPK14 The catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase subfamily. Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also
Probab=98.54  E-value=3.3e-07  Score=75.06  Aligned_cols=156  Identities=16%  Similarity=0.183  Sum_probs=84.0

Q ss_pred             HCCCCHHHHHHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf             04788999999867--6667788886555502128887236876403104688777788999875321146854334691
Q gi|254780623|r  111 ALKAPIEELYCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCF  188 (517)
Q Consensus       111 elg~~~~~~F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~  188 (517)
                      |+++..=++=+.++  +.|++||-|+||+|+-+.  +|+.||||+.+-.......                         
T Consensus         7 ~~~~~~~~I~drY~i~~~IG~G~fG~Vy~a~d~~--tg~~vAiK~i~~~~~~~~~-------------------------   59 (345)
T cd07877           7 ELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTK--TGLRVAVKKLSRPFQSIIH-------------------------   59 (345)
T ss_pred             ECCCEEECCCCCEEEEEEEECCCCEEEEEEEECC--CCCEEEEEEECCCCCCHHH-------------------------
T ss_conf             7387357655472880297327084999999889--9989999998830005588-------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCC-----HHCCCCEEEEECCCCCCCCHHHHHHHHCCCH
Q ss_conf             79999999887888655999988987202446776643000010-----2217833530024786324267733200225
Q gi|254780623|r  189 SAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDW-----NRTERDVITMEWIDGVKISDTEKLRACGHDL  263 (517)
Q Consensus       189 ~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~-----~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~  263 (517)
                             ...      +.+|.+.+..++.-    .-|.+-.+|.     +....-.++||+. |..+.+.-.  ......
T Consensus        60 -------~~~------~~rEi~iL~~l~Hp----nIv~l~d~f~~~~~~~~~~~~~iv~~~~-g~~L~~~~~--~~~l~e  119 (345)
T cd07877          60 -------AKR------TYRELRLLKHMKHE----NVIGLLDVFTPARSLEEFNDVYLVTHLM-GADLNNIVK--CQKLTD  119 (345)
T ss_pred             -------HHH------HHHHHHHHHHCCCC----CCCCEEEEEECCCCCCCCCCEEEEEECC-CCCHHHHHH--CCCCCH
T ss_conf             -------999------99999999866799----9332677883166434477089999279-988999986--289999


Q ss_pred             ---HHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             ---689999999999989744866178786228980289535743403121698
Q gi|254780623|r  264 ---ERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       264 ---~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                         +.++..++.+ +.-+-..|+.|.|.-|.||+++.+|.+-+.|||.....+.
T Consensus       120 ~~i~~i~~Qil~a-L~ylH~~gIiHRDIKPeNILl~~~~~vKL~DFGlAr~~~~  172 (345)
T cd07877         120 DHVQFLIYQILRG-LKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDD  172 (345)
T ss_pred             HHHHHHHHHHHHH-HHHHHHCCCEECCCCHHHEEECCCCCEEEEECCCCCCCCC
T ss_conf             9999999999999-9999988845455774552456778779996367754510


No 243
>cd07837 STKc_CdkB_plant The catalytic domain of the Serine/Threonine Kinase, Plant Cyclin-Dependent protein Kinase CdkB subfamily. Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrat
Probab=98.54  E-value=1.5e-07  Score=77.78  Aligned_cols=141  Identities=20%  Similarity=0.283  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.|+-|+||+|.-+.  +|+.||||+.+-...+.                                ......     
T Consensus         7 ~~lG~G~fg~V~~a~~~~--t~~~vAiK~~~~~~~~~--------------------------------~~~~~~-----   47 (295)
T cd07837           7 EKIGEGTYGKVYKARDKN--TGKLVALKKTRLEMDEE--------------------------------GIPPTA-----   47 (295)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHHHHH--------------------------------HHHHHH-----
T ss_conf             698326185999999999--99899999970352023--------------------------------448999-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCH--HCCC-----CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             59999889872024467766430000102--2178-----3353002478632426773320022568999999999998
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWN--RTER-----DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH  277 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~--~st~-----~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q  277 (517)
                       .+|.+.++.+.+    .+.  |.+.+.-  ..+.     -.+||||++|- +.+.-..... ...+.+.+..+..+++|
T Consensus        48 -~rEi~il~~l~~----~~~--i~~~~~~~~~~~~~~~~~~~iv~E~~~~~-l~~~~~~~~~-~~~~~l~e~~~~~~~~q  118 (295)
T cd07837          48 -LREISLLQMLSE----SIY--IVRLLDVEHVEEKNGKPSLYLVFEYLDSD-LKKFMDSNGR-GPGRPLPAKTIKSFMYQ  118 (295)
T ss_pred             -HHHHHHHHHCCC----CCC--EEEEEEEEEECCCCCCEEEEEEEECCCCC-HHHHHHHHCC-CCCCCCCHHHHHHHHHH
T ss_conf             -999999986147----997--89886457512678955899999548986-7999998354-57888899999999999


Q ss_pred             H-------HHCCEECCCCCCCEEEEECC-CCEEEEECCHHEECC
Q ss_conf             9-------74486617878622898028-953574340312169
Q gi|254780623|r  278 T-------LRDGFFHADLHPGNLFVDSK-GYIVAVDMGITGRLS  313 (517)
Q Consensus       278 i-------~~~GfFHaDPHpGNi~v~~d-g~i~~lDfG~vg~l~  313 (517)
                      +       -..|+.|.|.-|.||+++++ |.+-+.|||+...++
T Consensus       119 l~~al~~lH~~~IiHRDlKPeNILi~~~~~~iKl~DFGls~~~~  162 (295)
T cd07837         119 LLKGVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLGRAFS  162 (295)
T ss_pred             HHHHHHHHHHCCCEECCCCHHHEEECCCCCEEEEECCCCHHHCC
T ss_conf             99999999988866742776662462789879993257233214


No 244
>cd07853 STKc_NLK The catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase subfamily. Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate
Probab=98.54  E-value=2.5e-07  Score=75.98  Aligned_cols=143  Identities=20%  Similarity=0.249  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +|||.||-|+||+|+=+.  +|+.||||...- +.    .+..                           ..+.+     
T Consensus         6 r~IG~G~fG~Vy~a~d~~--tg~~VAiKki~~-~~----~~~~---------------------------~~~~~-----   46 (372)
T cd07853           6 RPIGYGAFGVVWSVTDPR--DGKRVALKKMPN-VF----QNLV---------------------------SCKRV-----   46 (372)
T ss_pred             EECCCCCCEEEEEEEECC--CCCEEEEEEECC-CC----CCHH---------------------------HHHHH-----
T ss_conf             463037683999999789--998999999893-00----3868---------------------------89999-----


Q ss_pred             HHHHHHHHHHHHC-CCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-----
Q ss_conf             5999988987202-4467766430000102217833530024786324267733200225689999999999989-----
Q gi|254780623|r  205 LRLEAAAFSEMAE-NTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT-----  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~-~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi-----  278 (517)
                       .+|.+.+..++. |.-..-++.-|.- .++-..-.+|||+++|- +.+.  +...    +.+.+.-+..|+.|+     
T Consensus        47 -~rEi~iL~~l~H~NIv~~~~v~~~~~-~~~~~~iyiv~el~~~d-L~~~--i~~~----~~l~~~~i~~i~~Qil~aL~  117 (372)
T cd07853          47 -FRELKMLCFFKHDNVLSALDILQPPH-IDPFEEIYVVTELMQSD-LHKI--IVSP----QPLSSDHVKVFLYQILRGLK  117 (372)
T ss_pred             -HHHHHHHHHCCCCCCCCEEEEEECCC-CCCCEEEEEEEECCCCC-HHHH--HHHC----CCCCHHHHHHHHHHHHHHHH
T ss_conf             -99999998679989891899995178-77622799998158975-8999--9746----99999999999999999999


Q ss_pred             --HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             --7448661787862289802895357434031216989
Q gi|254780623|r  279 --LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       279 --~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                        -..|+.|-|.-|+||+++.++.+-+.|||+....+++
T Consensus       118 ylHs~~IiHRDLKP~NILl~~~~~lKI~DFGlAr~~~~~  156 (372)
T cd07853         118 YLHSAGILHRDIKPGNLLVNSNCVLKICDFGLARVEEPD  156 (372)
T ss_pred             HHHHCCCEECCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf             997599152778779868878998897222555322688


No 245
>cd07852 STKc_MAPK15 The catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15 subfamily. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extrac
Probab=98.54  E-value=6.5e-08  Score=80.50  Aligned_cols=147  Identities=18%  Similarity=0.251  Sum_probs=84.5

Q ss_pred             HHHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf             999867--666778888655550212888723687640310468877778899987532114685433469179999999
Q gi|254780623|r  119 LYCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALE  196 (517)
Q Consensus       119 ~F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~  196 (517)
                      +...|+  +.|+.||-|.||+|+-+.  +|+.||||+.......    .                       ..     .
T Consensus         5 i~~rY~i~~~iG~G~fG~V~~a~~~~--t~~~vAiK~i~~~~~~----~-----------------------~~-----~   50 (337)
T cd07852           5 ILRKYEILQKLGKGAYGIVWKAIDRK--TGEVVALKKIFDAFRN----A-----------------------TD-----A   50 (337)
T ss_pred             HHHCCEEEEEEECCCCEEEEEEEECC--CCCEEEEEEECHHHCC----H-----------------------HH-----H
T ss_conf             65228870698427382999999889--9989999998826529----5-----------------------88-----9


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH---CCC-CEEEEECCCCCCCCHHHHHHHHCCC---HHHHHHH
Q ss_conf             88788865599998898720244677664300001022---178-3353002478632426773320022---5689999
Q gi|254780623|r  197 QVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR---TER-DVITMEWIDGVKISDTEKLRACGHD---LERLSVT  269 (517)
Q Consensus       197 ~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~---st~-~VLvmE~i~G~~i~d~~~l~~~~~d---~~~la~~  269 (517)
                      ....      +|...+.+++    +.+.  |.+.|.-+   ... -.|||||++|. +.+.  ++.....   .+.++..
T Consensus        51 ~~~~------rEi~~l~~l~----~Hpn--Iv~l~~~~~~~~~~~~ylV~Ey~~~~-L~~~--i~~~~~~e~~~~~i~~q  115 (337)
T cd07852          51 QRTF------REIMFLQELG----DHPN--IVKLLNVIKAENDKDIYLVFEYMETD-LHAV--IRANILEDIHKRYIMYQ  115 (337)
T ss_pred             HHHH------HHHHHHHHHH----CCCC--EEEEEEEEEECCCCEEEEEEECCCCC-HHHH--HHCCCCCHHHHHHHHHH
T ss_conf             9999------9999999840----7999--70698999816997799999347998-8999--86389999999999999


Q ss_pred             HHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             9999999897448661787862289802895357434031216989
Q gi|254780623|r  270 LVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       270 l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      ++.+ +.-+-..|+.|.|.-|.||+++.+|++-+.|||+...+++.
T Consensus       116 il~a-L~ylH~~gIiHRDIKPeNILl~~~~~iKl~DFGla~~~~~~  160 (337)
T cd07852         116 LLKA-LKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLARSLSQL  160 (337)
T ss_pred             HHHH-HHHHHHCCCCCCCCCHHHEEECCCCCCCCCCCCEEEECCCC
T ss_conf             9999-99998788541778668868868898512445412340345


No 246
>cd06631 STKc_YSK4 Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.
Probab=98.54  E-value=5.2e-08  Score=81.23  Aligned_cols=144  Identities=17%  Similarity=0.197  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-|+.||-|.||+|...   .|+.||||....+..                           +....-+       +.-+
T Consensus         6 ~~lG~G~fg~V~~~~~~---~g~~vAiK~v~~~~~---------------------------~~~~~~~-------~~~~   48 (265)
T cd06631           6 EVLGKGAYGTVYCGLTN---QGQLIAVKQVELDTS---------------------------NVLAAEK-------EYEK   48 (265)
T ss_pred             CEEECCCCCEEEEEEEC---CCCEEEEEEEEECCC---------------------------CHHHHHH-------HHHH
T ss_conf             48801789199999958---999999999981553---------------------------2145599-------9999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHH----HHHHHHHHHHHHHHHH
Q ss_conf             599998898720244677664300001022178335300247863242677332002256----8999999999998974
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLE----RLSVTLVQSFLLHTLR  280 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~----~la~~l~~~~~~qi~~  280 (517)
                      +.+|+.-++.++.    ..-|.+-.++.+ .+.-.+||||++|-.+.+.  ++..+.-..    .++..++.+. .-+-.
T Consensus        49 ~~~Ei~il~~l~H----pniv~~~~~~~~-~~~~~ivmEy~~gg~L~~~--l~~~~~~~e~~~~~~~~qi~~gl-~yLH~  120 (265)
T cd06631          49 LQEEVDLLKSLKH----VNIVQYLGTCLD-DNTISIFMEFVPGGSISSI--LNRFGPLPEPVFCKYTKQILDGV-AYLHN  120 (265)
T ss_pred             HHHHHHHHHHCCC----CCEEEEEEEEEE-CCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHHH-HHHHH
T ss_conf             9999999986899----997269999988-9989999991598948999--98649999999999999999999-99998


Q ss_pred             CCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             486617878622898028953574340312169
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                      .|+.|-|.-|.||+++++|.+-+.|||+...++
T Consensus       121 ~giiHRDlKp~NiLl~~~~~vKl~DFG~ak~~~  153 (265)
T cd06631         121 NCVVHRDIKGNNVMLMPNGIIKLIDFGCARRLA  153 (265)
T ss_pred             CCCCCCCCCHHHEEECCCCCEEEECCCCCCCCC
T ss_conf             888313278899238899989990375761444


No 247
>cd05621 STKc_ROCK2 STKc_ROCK2: Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found to play a role in stress fiber and focal adhesion formation. It is prominently expressed in the brain
Probab=98.54  E-value=1.9e-07  Score=76.89  Aligned_cols=142  Identities=13%  Similarity=0.203  Sum_probs=89.5

Q ss_pred             HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99867--6667788886555502128887236876403104688777788999875321146854334691799999998
Q gi|254780623|r  120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ  197 (517)
Q Consensus       120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~  197 (517)
                      .+.|+  +-|+.||-|+||.|+-++  +|+.+|+|+..-.-  .              .++               .-..
T Consensus        42 ~dDFeiik~IG~GsFG~V~lv~~k~--tg~~yAiK~i~K~~--~--------------~~~---------------~~~~   88 (370)
T cd05621          42 AEDYDVVKVIGRGAFGEVQLVRHKS--SQKVYAMKLLSKFE--M--------------IKR---------------SDSA   88 (370)
T ss_pred             HHHCEEEEEEEECCCCEEEEEEECC--CCCEEEEEEEEHHH--H--------------HHH---------------HHHH
T ss_conf             5400586688507684899999989--99899999998899--6--------------436---------------7899


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             87888655999988987202446776643000010221783--3530024786324267733200225689999999999
Q gi|254780623|r  198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFL  275 (517)
Q Consensus       198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~  275 (517)
                      .+.+      |..-+...     ++|.  |-+.|..+.+++  .|||||++|-.+.+.  +...+.     -+..+..|+
T Consensus        89 ~~~~------E~~il~~~-----~hp~--IV~l~~~Fqd~~~lylVmEy~~GGdL~~l--l~~~~~-----~E~~a~~y~  148 (370)
T cd05621          89 FFWE------ERDIMAFA-----NSPW--VVQLFCAFQDDKYLYMVMEYMPGGDLVNL--MSNYDV-----PEKWAKFYT  148 (370)
T ss_pred             HHHH------HHHHHHHC-----CCCC--CCCEEEEEEECCEEEEEEECCCCCCHHHH--HHCCCC-----CHHHHHHHH
T ss_conf             9999------99999857-----9998--89189999849989999858999749999--881898-----999999999


Q ss_pred             HH-------HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             98-------9744866178786228980289535743403121698
Q gi|254780623|r  276 LH-------TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       276 ~q-------i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      .|       +-..|+.|-|..|.||+++.+|.+-+.|||....+++
T Consensus       149 ~qi~~AL~yLH~~~IiHRDLKPeNILld~~g~iKL~DFGla~~~~~  194 (370)
T cd05621         149 AEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDE  194 (370)
T ss_pred             HHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCEEECCCCEEEEECC
T ss_conf             9999999998538678566673221225888735324521578447


No 248
>cd07879 STKc_p38delta_MAPK13 The catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MA
Probab=98.54  E-value=1.6e-07  Score=77.56  Aligned_cols=142  Identities=17%  Similarity=0.240  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.||+|+-|+||+|+-+  .+|+.||||+.+.......                                +....     
T Consensus        21 ~~IG~G~fG~Vy~a~d~--~tg~~vAiK~i~~~~~~~~--------------------------------~~~~~-----   61 (342)
T cd07879          21 KQVGSGAYGSVCSAIDK--RTGEKVAIKKLSRPFQSEI--------------------------------FAKRA-----   61 (342)
T ss_pred             EEEECCCCEEEEEEEEC--CCCCEEEEEEECHHHCCHH--------------------------------HHHHH-----
T ss_conf             79722718499999988--9998999999871122779--------------------------------99999-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCC-----HHCCCCEEEEECCCCCCCCHHHHHHHHCCCH---HHHHHHHHHHHHH
Q ss_conf             5999988987202446776643000010-----2217833530024786324267733200225---6899999999999
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDW-----NRTERDVITMEWIDGVKISDTEKLRACGHDL---ERLSVTLVQSFLL  276 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~-----~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~---~~la~~l~~~~~~  276 (517)
                       .+|...+..+..    ..-|.+-.++.     +-...-.+||||+.+    +...........   +.++..++.+ +.
T Consensus        62 -~rEi~il~~l~H----pnIv~l~~~~~~~~~~~~~~~~yiv~e~~~~----~l~~~~~~~l~e~~i~~i~~qil~a-L~  131 (342)
T cd07879          62 -YRELTLLKHMQH----ENVIGLLDVFTSAVSGDEFQDFYLVMPYMQT----DLQKIMGHPLSEDKVQYLVYQMLCG-LK  131 (342)
T ss_pred             -HHHHHHHHHCCC----CCEEEEEEEEECCCCCCCCCEEEEEECCCCC----CHHHHHCCCCCHHHHHHHHHHHHHH-HH
T ss_conf             -999999997469----9830047888504656666469999677524----3999965999999999999999999-99


Q ss_pred             HHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             897448661787862289802895357434031216989
Q gi|254780623|r  277 HTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       277 qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      -+-..|+.|.|.-|.||+++.+|.+-+.|||+....+..
T Consensus       132 ylH~~gIiHRDlKPeNILl~~~~~vKL~DFGlAr~~~~~  170 (342)
T cd07879         132 YIHSAGIIHRDLKPGNLAVNEDCELKILDFGLARHADAE  170 (342)
T ss_pred             HHHHCCCEECCCCHHHEEECCCCCEEEEECCCCCCCCCC
T ss_conf             998788455768668846867786699856577447876


No 249
>cd05101 PTKc_FGFR2 Catalytic Domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=98.53  E-value=3.1e-07  Score=75.25  Aligned_cols=155  Identities=14%  Similarity=0.163  Sum_probs=92.6

Q ss_pred             CCHHHHHHHHH--HHHHHHHHHHHHHHHEEC--C---CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             88999999867--666778888655550212--8---8872368764031046887777889998753211468543346
Q gi|254780623|r  114 APIEELYCEFD--DPIAAASIAQVHPAVVHD--I---NGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRL  186 (517)
Q Consensus       114 ~~~~~~F~~fd--ePlasASiaQVh~A~l~d--~---~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~  186 (517)
                      ..|+--++.|+  +.|++||-|+||+|+..-  .   ..+..||||+.+.+..+   .|                     
T Consensus         8 ~~wei~~~~~~l~~~lG~G~FG~Vy~a~~~g~~~~~~~~~~~vAvK~l~~~~~~---~~---------------------   63 (304)
T cd05101           8 PRWEFSRDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATE---KD---------------------   63 (304)
T ss_pred             CCCEECHHHEEECCEEECCCCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCH---HH---------------------
T ss_conf             875203899598368931647199998980666777750069999997865798---99---------------------


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHH------
Q ss_conf             917999999988788865599998898720244677664300001022--178335300247863242677332------
Q gi|254780623|r  187 CFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRA------  258 (517)
Q Consensus       187 ~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~------  258 (517)
                                     ..+|.+|++-+..+.+    .+.|  =+.|.-.  ...-.+||||++|-++.+.-.-..      
T Consensus        64 ---------------~~~~~~E~~~l~~l~~----HpNI--V~~~g~~~~~~~~~iv~Ey~~~GsL~~~l~~~~~~~~~~  122 (304)
T cd05101          64 ---------------LSDLVSEMEMMKMIGK----HKNI--INLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEY  122 (304)
T ss_pred             ---------------HHHHHHHHHHHHHHCC----CCCE--EEEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCC
T ss_conf             ---------------9999999999985148----9997--379999998998999998179998999998638864221


Q ss_pred             ---------HCCCHHH---HHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             ---------0022568---9999999999989744866178786228980289535743403121698
Q gi|254780623|r  259 ---------CGHDLER---LSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       259 ---------~~~d~~~---la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                               .....+.   ++..++.. +.-+-..|+.|.|.-|.||+++.++.+-+-|||+...++.
T Consensus       123 ~~~~~~~~~~~l~~~~~~~~~~qia~g-l~yLH~~~iiHRDLK~~NiLl~~~~~~Ki~DFGla~~~~~  189 (304)
T cd05101         123 SYDIARVPDEQMTFKDLVSCTYQVARG-MEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDVNN  189 (304)
T ss_pred             CCHHHCCCCCCCCHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCHHHEEECCCCCEEEEEEECCEECCC
T ss_conf             001102642236899999999999999-9999748865787777885575899589854011203577


No 250
>cd05604 STKc_SGK3 STKc_SGK3: Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling.
Probab=98.53  E-value=5e-07  Score=73.63  Aligned_cols=137  Identities=17%  Similarity=0.181  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67788886555502128887236876403104688777788999875321146854334691799999998878886559
Q gi|254780623|r  127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR  206 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~  206 (517)
                      |+.||-|+||.|+-+.  +|+.||+||.+....                .          +-     .....+..|.+  
T Consensus         3 LG~G~fG~V~la~~k~--tg~~~AiKvi~k~~~----------------~----------~~-----~~~~~~~~E~~--   47 (325)
T cd05604           3 IGKGSFGKVLLAKRKL--DGKCYAVKVLQKKIV----------------L----------NR-----KEQKHIMAERN--   47 (325)
T ss_pred             EEECCCEEEEEEEECC--CCCEEEEEEECHHHC----------------C----------CH-----HHHHHHHHHHH--
T ss_conf             8128894999999889--998999999816783----------------5----------98-----99999999999--


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHC-CCH---HHHHHHHHHHHHHHHHH
Q ss_conf             9998898720244677664300001022178--33530024786324267733200-225---68999999999998974
Q gi|254780623|r  207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACG-HDL---ERLSVTLVQSFLLHTLR  280 (517)
Q Consensus       207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~-~d~---~~la~~l~~~~~~qi~~  280 (517)
                          .+   .++. ++|.|  -+.|..+.++  -.|||||++|-.+.+.  +...+ .+-   +.++..++.+ +.-+-.
T Consensus        48 ----il---~~~~-~hp~I--v~l~~~f~~~~~lylVmEy~~gGdL~~~--l~~~~~l~e~~a~~y~~qi~~a-L~yLH~  114 (325)
T cd05604          48 ----VL---LKNV-KHPFL--VGLHYSFQTTEKLYFVLDFVNGGELFFH--LQRERSFPEPRARFYAAEIASA-LGYLHS  114 (325)
T ss_pred             ----HH---HHHC-CCCCC--CEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHHH
T ss_conf             ----99---9878-99988--9399999989999999978889889999--8745899999999999999999-999987


Q ss_pred             CCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             4866178786228980289535743403121
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                      .|+.|-|.-|.||+++.+|.+.+.|||+...
T Consensus       115 ~~IiHRDLKPeNILl~~~g~ikL~DFGlak~  145 (325)
T cd05604         115 INIVYRDLKPENILLDSQGHVVLTDFGLCKE  145 (325)
T ss_pred             CCCEECCCCCCCCCCCCCCCEEEEECCHHHC
T ss_conf             8914302275442426899789743231010


No 251
>cd05596 STKc_ROCK STKc_ROCK: Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesio
Probab=98.53  E-value=2.2e-07  Score=76.42  Aligned_cols=143  Identities=15%  Similarity=0.271  Sum_probs=91.0

Q ss_pred             HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99867--6667788886555502128887236876403104688777788999875321146854334691799999998
Q gi|254780623|r  120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ  197 (517)
Q Consensus       120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~  197 (517)
                      .+.|+  +-|+.||-|+|+.|+-++  +|+.+|+|+.+..-                +.+               ..-..
T Consensus        42 ~dDFe~lk~lG~G~FG~V~lv~~k~--tg~~yA~K~i~K~~----------------~~~---------------~~~~~   88 (370)
T cd05596          42 AEDFDVIKVIGRGAFGEVQLVRHKS--SKQVYAMKLLSKFE----------------MIK---------------RSDSA   88 (370)
T ss_pred             HHHCEEEEEEEECCCCEEEEEEECC--CCCEEEEEEEEHHH----------------HHH---------------HHHHH
T ss_conf             7885682268507284999999989--99899999987899----------------652---------------67899


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             87888655999988987202446776643000010221783--3530024786324267733200225689999999999
Q gi|254780623|r  198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFL  275 (517)
Q Consensus       198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~  275 (517)
                      .+.+|.      .-+...     ++|.  |.+.|..+-+++  .+||||++|-.+.+.  +....     +.+.-+..|+
T Consensus        89 ~~~~E~------~il~~~-----~hp~--IV~l~~~Fqd~~~lylVmEy~~GGdL~~l--l~~~~-----l~E~~a~~y~  148 (370)
T cd05596          89 FFWEER------DIMAHA-----NSEW--IVQLHYAFQDDKYLYMVMEYMPGGDLVNL--MSNYD-----IPEKWARFYT  148 (370)
T ss_pred             HHHHHH------HHHHHC-----CCCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHCCC-----CCHHHHHHHH
T ss_conf             999999------999867-----9998--78489999869999999948999748999--87379-----8999999999


Q ss_pred             HHH-------HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             989-------7448661787862289802895357434031216989
Q gi|254780623|r  276 LHT-------LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       276 ~qi-------~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      .|+       -..|+.|-|.-|.||+++.+|.+-+.|||....++..
T Consensus       149 aqi~~aL~yLH~~~iiHRDLKPeNiLld~~G~iKL~DFGla~~~~~~  195 (370)
T cd05596         149 AEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDAN  195 (370)
T ss_pred             HHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEECCHHHHEEECCC
T ss_conf             99999999980086782257776531147886640352561463578


No 252
>cd05607 STKc_GRK7 STKc_GRK7: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation
Probab=98.53  E-value=3.3e-07  Score=74.99  Aligned_cols=141  Identities=17%  Similarity=0.274  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67788886555502128887236876403104688777788999875321146854334691799999998878886559
Q gi|254780623|r  127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR  206 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~  206 (517)
                      |+.|+-|+||+|+-+.  +|+.||||+....-   +              ..  .            +....      ..
T Consensus         1 lG~G~fg~V~~~~~~~--tg~~~AiK~i~k~~---~--------------~~--~------------~~~~~------~~   41 (277)
T cd05607           1 LGKGGFGEVCAVQVKN--TGKMYACKKLDKKR---L--------------KK--K------------SGEKM------AL   41 (277)
T ss_pred             CCCCCCEEEEEEEECC--CCCEEEEEEEEHHH---H--------------CC--H------------HHHHH------HH
T ss_conf             9778456999999989--99899999981789---1--------------44--5------------78999------99


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHH-HHHHHHCCCHHHH---HHHHHHHHHHHHHH
Q ss_conf             9998898720244677664300001022178--3353002478632426-7733200225689---99999999998974
Q gi|254780623|r  207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDT-EKLRACGHDLERL---SVTLVQSFLLHTLR  280 (517)
Q Consensus       207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~-~~l~~~~~d~~~l---a~~l~~~~~~qi~~  280 (517)
                      .|...+.++..     |.  |.+.|..+.++  -.|||||++|-.+.+. ......+.+...+   +..++.+. .-+-.
T Consensus        42 ~E~~il~~l~h-----p~--iv~l~~~~~~~~~~~lvmE~~~ggdL~~~i~~~~~~~~~~~~~~~~~~qi~~al-~ylH~  113 (277)
T cd05607          42 LEKEILEKVNS-----PF--IVNLAYAFESKTHLCLVMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGI-LHLHS  113 (277)
T ss_pred             HHHHHHHHCCC-----CC--CCCEEEEEEECCEEEEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHH-HHHHH
T ss_conf             99999986799-----98--991878998799899999805898089999853778999999999999999999-99986


Q ss_pred             CCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             4866178786228980289535743403121698
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      .|+.|-|.-|.||+++.+|.+-+.|||+...++.
T Consensus       114 ~~IiHRDlKPeNILl~~~g~~Kl~DFGla~~~~~  147 (277)
T cd05607         114 MDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKD  147 (277)
T ss_pred             CCCCCCCCCHHHCCCCCCCCEEEEECCEEEECCC
T ss_conf             8955254777871305789779845570268689


No 253
>cd05093 PTKc_TrkB Catalytic Domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B. Protein Tyrosine Kinase (PTK) family; Tropomyosin related kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly 
Probab=98.52  E-value=2.3e-07  Score=76.25  Aligned_cols=144  Identities=13%  Similarity=0.183  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHHHHEECC---CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             76667788886555502128---887236876403104688777788999875321146854334691799999998878
Q gi|254780623|r  124 DDPIAAASIAQVHPAVVHDI---NGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTK  200 (517)
Q Consensus       124 dePlasASiaQVh~A~l~d~---~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~  200 (517)
                      .+.|++||-|+||+|+++..   ..+..||||+.+..-.                              .          
T Consensus        10 ~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~------------------------------~----------   49 (288)
T cd05093          10 KRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASD------------------------------N----------   49 (288)
T ss_pred             EEEECCCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCH------------------------------H----------
T ss_conf             359804768299999980577687667999999587685------------------------------8----------


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHH------------HCCCH---HH
Q ss_conf             8865599998898720244677664300001022178335300247863242677332------------00225---68
Q gi|254780623|r  201 MEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRA------------CGHDL---ER  265 (517)
Q Consensus       201 ~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~------------~~~d~---~~  265 (517)
                      ..-+|.+|++.+.+++.-    .-|.+=.++.+ ...-.+||||++|-.+.+.-.-+.            ...+.   ..
T Consensus        50 ~~~~~~~E~~il~~l~Hp----nIV~~~g~~~~-~~~~~iv~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (288)
T cd05093          50 ARKDFHREAELLTNLQHE----HIVKFYGVCVE-GDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLH  124 (288)
T ss_pred             HHHHHHHHHHHHHHCCCC----CCCCEEEEEEE-CCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             999999999999867998----87738789967-9989999980699908999987086410001357766689999999


Q ss_pred             HHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             999999999998974486617878622898028953574340312169
Q gi|254780623|r  266 LSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       266 la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                      ++..++... .-+-..|+.|-|.-|.||+++.++.+-+.|||+...+.
T Consensus       125 i~~qia~gl-~yLH~~~iiHRDLKp~NILl~~~~~~Ki~DFGls~~~~  171 (288)
T cd05093         125 IAQQIAAGM-VYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVY  171 (288)
T ss_pred             HHHHHHHHH-HHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCC
T ss_conf             999999999-99844894678777132899999939982155573767


No 254
>cd06624 STKc_ASK Serine/threonine kinases (STKs), apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4
Probab=98.52  E-value=1.2e-07  Score=78.38  Aligned_cols=149  Identities=17%  Similarity=0.128  Sum_probs=89.0

Q ss_pred             HHHHHHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf             999999867--666778888655550212888723687640310468877778899987532114685433469179999
Q gi|254780623|r  116 IEELYCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVR  193 (517)
Q Consensus       116 ~~~~F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~  193 (517)
                      |+-.|.+++  +.|+.|+-|.||+|+-+.  +++.||||+....-                             .     
T Consensus         3 ~~~~y~~~~~~~vIG~G~fg~Vy~~~~~~--~~~~vAiK~i~~~~-----------------------------~-----   46 (268)
T cd06624           3 YEYEYDENGERVVLGKGTYGVVYAGRDLS--TQVRIAIKEIPERD-----------------------------S-----   46 (268)
T ss_pred             CCCCCCCCCCEEEEEECCCEEEEEEEECC--CCCEEEEEEECCCC-----------------------------H-----
T ss_conf             66645679871899637482999999889--99599999987358-----------------------------5-----


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCH--HCCCCEEEEECCCCCCCCHHHHHHHHCC--CH---HHH
Q ss_conf             9998878886559999889872024467766430000102--2178335300247863242677332002--25---689
Q gi|254780623|r  194 ALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWN--RTERDVITMEWIDGVKISDTEKLRACGH--DL---ERL  266 (517)
Q Consensus       194 e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~--~st~~VLvmE~i~G~~i~d~~~l~~~~~--d~---~~l  266 (517)
                      +..+      ++.+|.+-+.+++.     |.|  -+.|.-  -...-.+||||+.|-.+.+.-.-.....  +.   ..+
T Consensus        47 ~~~~------~~~~Ei~i~~~l~H-----pnI--v~~~~~~~~~~~~~iv~Ey~~gg~L~~~l~~~~~~~~~~e~~~~~~  113 (268)
T cd06624          47 RYSQ------PLHEEIALHSRLKH-----KNI--VQYLGSDSENGYFKIFMEQVPGGSLSALLRSKWGPLKDNESTIIFY  113 (268)
T ss_pred             HHHH------HHHHHHHHHHHCCC-----CCC--CEEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCCHHHHHHH
T ss_conf             8899------99999999986899-----898--7399999789999999983899969999986168998579999999


Q ss_pred             HHHHHHHHHHHHHHCCEECCCCCCCEEEEEC-CCCEEEEECCHHEECCH
Q ss_conf             9999999999897448661787862289802-89535743403121698
Q gi|254780623|r  267 SVTLVQSFLLHTLRDGFFHADLHPGNLFVDS-KGYIVAVDMGITGRLSK  314 (517)
Q Consensus       267 a~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~-dg~i~~lDfG~vg~l~~  314 (517)
                      +..++.+. .-+-..|+.|-|.-|.||+++. +|.+-+.|||+...++.
T Consensus       114 ~~qi~~al-~ylH~~~IiHRDlKp~NiLl~~~~~~vKl~DFG~a~~~~~  161 (268)
T cd06624         114 TKQILEGL-KYLHDNQIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAG  161 (268)
T ss_pred             HHHHHHHH-HHHHHCCEEECCCCCCEEEEECCCCCEEEECCCCCEECCC
T ss_conf             99999999-9998799676346621389947999889941877858677


No 255
>cd07866 STKc_BUR1 The catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 subfamily. Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen 
Probab=98.52  E-value=2.4e-07  Score=76.11  Aligned_cols=140  Identities=14%  Similarity=0.202  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-|++||-|.||+|.-+.  +|+.||+|+..-.-.                     .        +   .+....     
T Consensus        14 ~~iG~G~fg~V~~a~~~~--t~~~vAiK~i~~~~~---------------------~--------~---~~~~~~-----   54 (311)
T cd07866          14 GKLGEGTFGEVYKARQIK--TGRVVALKKILMHNE---------------------K--------D---GFPITA-----   54 (311)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEECCCC---------------------C--------H---HHHHHH-----
T ss_conf             698417090999999999--998999999860113---------------------3--------1---668999-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCC-------HHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             5999988987202446776643000010-------221783353002478632426773320022568999999999998
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDW-------NRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH  277 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~-------~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q  277 (517)
                       .+|++.+.+++.  .  .-|.+-.++.       +....-.+||||++|--.+   .+...+.   .+-+.-+..+++|
T Consensus        55 -~~Ei~il~~l~H--~--nIi~~~~~~~~~~~~~~~~~~~~~~v~ey~~~dl~~---~l~~~~~---~l~~~~~~~i~~q  123 (311)
T cd07866          55 -LREIKILKKLKH--P--NVVPLIDMAVERPDKSKRKRGSVYMVTPYMDHDLSG---LLENPSV---KLTESQIKCYMLQ  123 (311)
T ss_pred             -HHHHHHHHHCCC--C--CCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCHHH---HHHHCCC---CCCHHHHHHHHHH
T ss_conf             -999999997279--9--822035799973665445476699998156876788---9985478---9999999999999


Q ss_pred             H-------HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             9-------744866178786228980289535743403121698
Q gi|254780623|r  278 T-------LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       278 i-------~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      +       -..|+.|.|.-|.||+++.+|.+-+.|||+...++.
T Consensus       124 ll~al~ylH~~~IiHRDlKPeNILl~~~~~~Kl~DFG~a~~~~~  167 (311)
T cd07866         124 LLEGINYLHENHILHRDIKAANILIDNQGILKIADFGLARPYDG  167 (311)
T ss_pred             HHHHHHHHHHCCCEECCCCHHHEEECCCCCEEECCCCCCEECCC
T ss_conf             99999999978960111768995688999889855898737466


No 256
>cd05617 STKc_aPKC_zeta STKc_aPKC_zeta: Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeas
Probab=98.51  E-value=1.8e-07  Score=77.08  Aligned_cols=138  Identities=14%  Similarity=0.175  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             66778888655550212888723687640310468877778899987532114685433469179999999887888655
Q gi|254780623|r  126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL  205 (517)
Q Consensus       126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~  205 (517)
                      -|+.||-|.||.|+.+.  +|+.+|+|+.+....   ..                        .+    -...+.     
T Consensus         2 ~LG~G~fg~V~~~~~~~--t~~~~AiK~i~k~~~---~~------------------------~~----~~~~~~-----   43 (327)
T cd05617           2 VIGRGSYAKVLLVRLKK--NDQIYAMKVVKKELV---HD------------------------DE----DIDWVQ-----   43 (327)
T ss_pred             EEEECCCCEEEEEEECC--CCCEEEEEEECHHHC---CC------------------------HH----HHHHHH-----
T ss_conf             54118190999999889--997999999847887---59------------------------89----999999-----


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHC-CCH---HHHHHHHHHHHHHHHH
Q ss_conf             999988987202446776643000010221783--3530024786324267733200-225---6899999999999897
Q gi|254780623|r  206 RLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACG-HDL---ERLSVTLVQSFLLHTL  279 (517)
Q Consensus       206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~-~d~---~~la~~l~~~~~~qi~  279 (517)
                       +|..-+.+..    .+|.  |.+.|.-+.+++  .|||||++|-.+.+.  +...+ .+.   ..++..++.+ +.-+-
T Consensus        44 -~E~~il~~~~----~hp~--Iv~l~~~f~~~~~lylVmEy~~gGdL~~~--l~~~~~l~e~~a~~~~~qi~~a-L~yLH  113 (327)
T cd05617          44 -TEKHVFEQAS----SNPF--LVGLHSCFQTTSRLFLVIEYVNGGDLMFH--MQRQRKLPEEHARFYAAEICIA-LNFLH  113 (327)
T ss_pred             -HHHHHHHHCC----CCCC--EEEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHH
T ss_conf             -9999999705----8998--74799999989999999958899839999--9874999999999999999999-99998


Q ss_pred             HCCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             44866178786228980289535743403121
Q gi|254780623|r  280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                      ..|+.|-|.-|.||+++.+|.+.+.|||++..
T Consensus       114 ~~gIiHRDLKPeNILld~~g~iKL~DFGlak~  145 (327)
T cd05617         114 ERGIIYRDLKLDNVLLDADGHIKLTDYGMCKE  145 (327)
T ss_pred             HCEEEECCCCCCCEEECCCCCEEECCCCCCHH
T ss_conf             39289375556660573699677323550110


No 257
>cd07849 STKc_ERK1_2_like The catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK ki
Probab=98.51  E-value=3e-07  Score=75.38  Aligned_cols=144  Identities=17%  Similarity=0.162  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-|+.|+-|+||+|+-+.  +|+.||||+..|.-..                                 .+....     
T Consensus        11 ~~iG~G~fg~V~~a~~~~--t~~~vAiK~i~~~~~~---------------------------------~~~~~~-----   50 (336)
T cd07849          11 SYIGEGAYGMVCSATHKP--TGVKVAIKKISPFEHQ---------------------------------TFCQRT-----   50 (336)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEECCCCH---------------------------------HHHHHH-----
T ss_conf             797325086999999889--9989999998414481---------------------------------899999-----


Q ss_pred             HHHHHHHHHHHHC-CCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCH---HHHHHHHHHHHHHHHHH
Q ss_conf             5999988987202-4467766430000102217833530024786324267733200225---68999999999998974
Q gi|254780623|r  205 LRLEAAAFSEMAE-NTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDL---ERLSVTLVQSFLLHTLR  280 (517)
Q Consensus       205 ~~~Ea~n~~~~~~-~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~---~~la~~l~~~~~~qi~~  280 (517)
                       .+|.+.+.+++. |.-..-++..+.-| +..+.-.+||||++|. +.+.  ++.....-   +.++..++.+ +.-+-.
T Consensus        51 -~rEi~il~~l~H~nIv~l~~v~~~~~~-~~~~~~yiv~E~~~~~-L~~~--~~~~~l~~~~i~~~~~qil~a-L~~lH~  124 (336)
T cd07849          51 -LREIKILRRFKHENIIGILDIIRPPSF-ESFNDVYIVQELMETD-LYKL--IKTQHLSNDHIQYFLYQILRG-LKYIHS  124 (336)
T ss_pred             -HHHHHHHHHCCCCCCCCEEEEEECCCC-CCCCEEEEEEECCCCC-HHHH--HHCCCCCHHHHHHHHHHHHHH-HHHHHH
T ss_conf             -999999987689994747889953773-5576689998327876-7999--862899999999999999999-999987


Q ss_pred             CCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             4866178786228980289535743403121698
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      .|+.|.|.-|.||+++.+|.+-+.|||....+++
T Consensus       125 ~~IiHRDiKPeNILl~~~~~vKL~DFGla~~~~~  158 (336)
T cd07849         125 ANVLHRDLKPSNLLLNTNCDLKICDFGLARIADP  158 (336)
T ss_pred             CCCEECCCCHHHEEECCCCCEEECCCCCCEECCC
T ss_conf             8875356756877987999888424452210366


No 258
>cd05094 PTKc_TrkC Catalytic Domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C. Protein Tyrosine Kinase (PTK) family; Tropomyosin related kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n
Probab=98.51  E-value=3.2e-07  Score=75.08  Aligned_cols=143  Identities=13%  Similarity=0.217  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHHHHEECC---CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             76667788886555502128---887236876403104688777788999875321146854334691799999998878
Q gi|254780623|r  124 DDPIAAASIAQVHPAVVHDI---NGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTK  200 (517)
Q Consensus       124 dePlasASiaQVh~A~l~d~---~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~  200 (517)
                      .+.|++||-|+||+|+.++.   ..+..||||+.+.                        +     +           +.
T Consensus        10 ~~~iG~G~FG~Vy~a~~~~~~~~~~~~~vAvK~l~~------------------------~-----~-----------~~   49 (291)
T cd05094          10 KRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKD------------------------P-----T-----------LA   49 (291)
T ss_pred             EEEEECCCCCEEEEEEECCCCCCCCCEEEEEEEECC------------------------C-----C-----------HH
T ss_conf             049813768699999981676377777999999787------------------------4-----5-----------57


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCC-CCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHH---------------HCCC--
Q ss_conf             886559999889872024467766-4300001022178335300247863242677332---------------0022--
Q gi|254780623|r  201 MEMDLRLEAAAFSEMAENTVKDQG-FRVPKIDWNRTERDVITMEWIDGVKISDTEKLRA---------------CGHD--  262 (517)
Q Consensus       201 ~ElD~~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~---------------~~~d--  262 (517)
                      .+-+|.+|++.+.+++.     |. |.+=.++.+ ...-.|||||++|-.+.+.-.-+.               ...+  
T Consensus        50 ~~~~~~~E~~il~~l~H-----pnIV~l~g~~~~-~~~~~lv~Ey~~~G~L~~~l~~~~~~~~~~~~~~p~~~~~~l~~~  123 (291)
T cd05094          50 ARKDFQREAELLTNLQH-----EHIVKFYGVCGD-GDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLS  123 (291)
T ss_pred             HHHHHHHHHHHHHHCCC-----CCCCCEEEEEEE-CCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCHHCCCCCCHH
T ss_conf             89999999999985899-----887738889823-998899999169992999998619741001234420104778999


Q ss_pred             -HHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             -568999999999998974486617878622898028953574340312169
Q gi|254780623|r  263 -LERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       263 -~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                       .-.++..++.+. .-+-..|+.|.|.-|.||+++.++.+-+.|||+...+.
T Consensus       124 ~~~~i~~qia~gl-~yLH~~~iiHRDLKp~NILl~~~~~~Ki~DFGlsr~~~  174 (291)
T cd05094         124 QMLHIASQIASGM-VYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVY  174 (291)
T ss_pred             HHHHHHHHHHHHH-HHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCC
T ss_conf             9999999999999-99975892656776405998799978994465654067


No 259
>cd05588 STKc_aPKC STKc_aPKC: Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytos
Probab=98.51  E-value=3.9e-07  Score=74.48  Aligned_cols=137  Identities=18%  Similarity=0.180  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67788886555502128887236876403104688777788999875321146854334691799999998878886559
Q gi|254780623|r  127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR  206 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~  206 (517)
                      |+.||-|.||+|+-+.  +|+.+|+|+.+....   ..+                        +    ....+..     
T Consensus         3 LG~G~fG~V~~~~~~~--t~~~~AiK~i~k~~~---~~~------------------------~----~~~~~~~-----   44 (329)
T cd05588           3 IGRGSYAKVLLVELKK--TRRIYAMKVIKKELV---NDD------------------------E----DIDWVQT-----   44 (329)
T ss_pred             EEECCCEEEEEEEECC--CCCEEEEEEECHHHC---CCH------------------------H----HHHHHHH-----
T ss_conf             3038793999999889--998999999837887---798------------------------9----9999999-----


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHC-CC---HHHHHHHHHHHHHHHHHH
Q ss_conf             99988987202446776643000010221783--3530024786324267733200-22---568999999999998974
Q gi|254780623|r  207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACG-HD---LERLSVTLVQSFLLHTLR  280 (517)
Q Consensus       207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~-~d---~~~la~~l~~~~~~qi~~  280 (517)
                       |..-++..    .+.|.  |.+.|.-+.+++  .|||||++|-.+.+.  +...+ ..   .+.++..++.+ +.-+-.
T Consensus        45 -E~~il~~~----~~Hp~--Iv~l~~~f~~~~~lylvmEy~~GGdL~~~--l~~~~~l~e~~a~~~~~qi~~a-L~ylH~  114 (329)
T cd05588          45 -EKHVFETA----SNHPF--LVGLHSCFQTESRLFFVIEFVSGGDLMFH--MQRQRKLPEEHARFYSAEISLA-LNFLHE  114 (329)
T ss_pred             -HHHHHHHH----CCCCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHHH
T ss_conf             -99999971----59998--79599999989999999958898868999--9874999999999999999999-999986


Q ss_pred             CCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             4866178786228980289535743403121
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                      .|+.|-|.-|.||+++.+|.+-+.|||++..
T Consensus       115 ~gIiHRDlKPeNILld~~g~iKL~DFGlak~  145 (329)
T cd05588         115 RGIIYRDLKLDNVLLDAEGHIKLTDYGMCKE  145 (329)
T ss_pred             CCCCCCCCCCCCEEECCCCCEEECCCCCCCC
T ss_conf             5872363264210364789775233220110


No 260
>cd05618 STKc_aPKC_iota STKc_aPKC_iota: Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been i
Probab=98.50  E-value=1.8e-07  Score=77.08  Aligned_cols=137  Identities=18%  Similarity=0.177  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67788886555502128887236876403104688777788999875321146854334691799999998878886559
Q gi|254780623|r  127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR  206 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~  206 (517)
                      |+.||-|.||.|+-+.  +|+.||||+.+....   ..+                            +-...+..|    
T Consensus         3 LG~G~fG~V~~~~~~~--t~~~~AiK~i~k~~~---~~~----------------------------~~~~~~~~E----   45 (329)
T cd05618           3 IGRGSYAKVLLVRLKK--TERIYAMKVVKKELV---NDD----------------------------EDIDWVQTE----   45 (329)
T ss_pred             EEECCCEEEEEEEECC--CCCEEEEEEECHHHC---CCH----------------------------HHHHHHHHH----
T ss_conf             4038793999999989--998999999867887---798----------------------------999999999----


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHC-CC---HHHHHHHHHHHHHHHHHH
Q ss_conf             9998898720244677664300001022178--33530024786324267733200-22---568999999999998974
Q gi|254780623|r  207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACG-HD---LERLSVTLVQSFLLHTLR  280 (517)
Q Consensus       207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~-~d---~~~la~~l~~~~~~qi~~  280 (517)
                        ..-+.+..    +.|.  |.+.|.-+.++  -.+||||++|-.+...  +...+ .+   .+.++..++.+ +.-+-.
T Consensus        46 --~~il~~~~----~Hp~--Iv~l~~~f~~~~~lylVmEy~~GGdL~~~--l~~~~~l~e~~a~~~~~qi~~a-L~yLH~  114 (329)
T cd05618          46 --KHVFEQAS----NHPF--LVGLHSCFQTESRLFFVIEYVNGGDLMFH--MQRQRKLPEEHARFYSAEISLA-LNYLHE  114 (329)
T ss_pred             --HHHHHHHC----CCCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHHC
T ss_conf             --99999713----9997--79599999989999999958898898999--9874999999999999999999-999863


Q ss_pred             CCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             4866178786228980289535743403121
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                      .|+.|-|.-|.||+++.+|.+-+.|||+...
T Consensus       115 ~~IiHRDLKPeNILld~~g~iKL~DFGlak~  145 (329)
T cd05618         115 RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKE  145 (329)
T ss_pred             CCEEECCCCCCCCCCCCCCCEEECCCHHHHH
T ss_conf             9689644572100315688566314005555


No 261
>cd06618 PKc_MKK7 Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and 
Probab=98.50  E-value=3.7e-07  Score=74.66  Aligned_cols=146  Identities=20%  Similarity=0.226  Sum_probs=82.6

Q ss_pred             HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99867--6667788886555502128887236876403104688777788999875321146854334691799999998
Q gi|254780623|r  120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ  197 (517)
Q Consensus       120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~  197 (517)
                      +..|+  +-|++||-|.||+|+-+.  +|+.||||+.+..-..                                ++. .
T Consensus        14 l~dy~il~~IG~G~fG~Vy~a~~~~--t~~~vAvK~i~~~~~~--------------------------------~~~-~   58 (296)
T cd06618          14 LNDLENLGEIGSGTCGQVYKMRFKK--TGHVMAVKQMRRTGNK--------------------------------EEN-K   58 (296)
T ss_pred             HHHEEEEEEEECCCCEEEEEEEECC--CCCEEEEEEECCCCCC--------------------------------HHH-H
T ss_conf             6743998898208892999999999--9979999998502490--------------------------------799-9


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHHHCCCHHHHH----HHHH
Q ss_conf             878886559999889872024467766430000102217--8335300247863242677332002256899----9999
Q gi|254780623|r  198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRACGHDLERLS----VTLV  271 (517)
Q Consensus       198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la----~~l~  271 (517)
                      .+.      +|...+.+.   . +.|.  |-+.|.-+.+  .-.+||||+.|. +.++-.-..... +..++    ..++
T Consensus        59 ~~~------~e~~~l~~~---~-~hpn--Iv~l~~~~~~~~~~~ivmE~~~~~-l~~l~~~~~~~~-~e~~~~~~~~qi~  124 (296)
T cd06618          59 RIL------MDLDVVLKS---H-DCPY--IVKCYGYFITDSDVFICMELMSTC-LDKLLKRIQGPI-PEDILGKMTVAIV  124 (296)
T ss_pred             HHH------HHHHHHHHH---C-CCCC--EEEEEEEEEECCEEEEEEEECCCC-HHHHHHHHCCCC-CHHHHHHHHHHHH
T ss_conf             999------999999985---7-9995--656999999899999999949987-799999726999-9999999999999


Q ss_pred             HHHHHHH-HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             9999989-7448661787862289802895357434031216989
Q gi|254780623|r  272 QSFLLHT-LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       272 ~~~~~qi-~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      .+.- -+ -.+|+.|-|.-|+||+++.+|.+-+.|||+.+.+...
T Consensus       125 ~al~-ylH~~~~IiHRDIKP~NILi~~~g~iKi~DFGla~~~~~~  168 (296)
T cd06618         125 KALH-YLKEKHGVIHRDVKPSNILLDASGNVKLCDFGISGRLVDS  168 (296)
T ss_pred             HHHH-HHHHHCCEEECCCCCCCEEECCCCCEEEEECCCEEEECCC
T ss_conf             9999-9987379873324666357869998899545840460378


No 262
>cd05622 STKc_ROCK1 STKc_ROCK1: Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, and kidney. It mediates signaling from Rho to the actin cytoskeleton. It is implicated in the developme
Probab=98.50  E-value=3.2e-07  Score=75.10  Aligned_cols=141  Identities=15%  Similarity=0.232  Sum_probs=89.1

Q ss_pred             HHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             867--666778888655550212888723687640310468877778899987532114685433469179999999887
Q gi|254780623|r  122 EFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT  199 (517)
Q Consensus       122 ~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  199 (517)
                      .|+  +-|+.||-|+|+.|+-+.  +|+.+|+|+....-  .++.                             .-...+
T Consensus        44 DFeilk~IG~G~FG~V~la~~k~--tg~~yAiKii~K~~--~~~~-----------------------------~~~~~~   90 (371)
T cd05622          44 DYEVVKVIGRGAFGEVQLVRHKS--TRKVYAMKLLSKFE--MIKR-----------------------------SDSAFF   90 (371)
T ss_pred             HEEEEEEEECCCCCEEEEEEECC--CCCEEEEEEEEHHH--HHHH-----------------------------HHHHHH
T ss_conf             70672388307381999999999--99699999988899--5347-----------------------------899999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             888655999988987202446776643000010221783--353002478632426773320022568999999999998
Q gi|254780623|r  200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH  277 (517)
Q Consensus       200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q  277 (517)
                            .+|.+-+...     ++|.  |.+.|..+.+++  .|||||++|-.+.+.  +...+. .    +..+..|+.|
T Consensus        91 ------~~E~~il~~l-----~hp~--IVkl~~~fqd~~~lylVmEy~~GGdL~~~--l~~~~l-~----e~~a~~y~~q  150 (371)
T cd05622          91 ------WEERDIMAFA-----NSPW--VVQLFYAFQDDRYLYMVMEYMPGGDLVNL--MSNYDV-P----EKWARFYTAE  150 (371)
T ss_pred             ------HHHHHHHHHC-----CCCC--CCCEEEEEEECCEEEEEEECCCCCCHHHH--HHCCCC-C----HHHHHHHHHH
T ss_conf             ------9999999867-----9999--99188999879989999958889708999--981898-9----9999999999


Q ss_pred             -------HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             -------97448661787862289802895357434031216989
Q gi|254780623|r  278 -------TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       278 -------i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                             +-..|+.|-|.-|.||+++.+|.+-+.|||+...++..
T Consensus       151 il~aL~yLH~~gIiHRDLKPeNILld~~g~iKL~DFGla~~~~~~  195 (371)
T cd05622         151 VVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKE  195 (371)
T ss_pred             HHHHHHHHHHCCEEECCCCCCCCCCCCCCCEEEEECCCCEECCCC
T ss_conf             999999985286686876701152268998898268661116878


No 263
>KOG0574 consensus
Probab=98.49  E-value=7.8e-07  Score=72.12  Aligned_cols=267  Identities=15%  Similarity=0.132  Sum_probs=144.8

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             99998754047889999998676667788886555502128887236876403104688777788999875321146854
Q gi|254780623|r  103 TARLSVASALKAPIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPS  182 (517)
Q Consensus       103 ~v~~~ie~elg~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~  182 (517)
                      +-.+.=+..|.++++++|.-.+ -++-+|-|.||+|.-+.  +|+-||+|- -|     ++.                  
T Consensus        18 ~~~KLd~~sL~K~PEEVFDi~~-KLGEGSYGSV~KAIH~E--sG~v~AIK~-VP-----V~s------------------   70 (502)
T KOG0574          18 DGFKLDSSALNKPPEEVFDIVG-KLGEGSYGSVHKAIHRE--SGHVLAIKK-VP-----VDT------------------   70 (502)
T ss_pred             CCCCCCHHHHCCCHHHHHHHHH-HHCCCCCHHHHHHHHHC--CCCEEEEEE-CC-----CCC------------------
T ss_conf             0123575440288499999998-73688615889998754--684788871-47-----630------------------


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCC
Q ss_conf             33469179999999887888655999988987202446776643000010221783353002478632426773320022
Q gi|254780623|r  183 MRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHD  262 (517)
Q Consensus       183 ~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d  262 (517)
                          |+.+++.|+  ++.+++|-..-   .+.++..|++              |.-.+||||+-.-+++|+-++......
T Consensus        71 ----DLQEIIKEI--SIMQQC~S~yV---VKYYGSYFK~--------------sDLWIVMEYCGAGSiSDI~R~R~K~L~  127 (502)
T KOG0574          71 ----DLQEIIKEI--SIMQQCKSKYV---VKYYGSYFKH--------------SDLWIVMEYCGAGSISDIMRARRKPLS  127 (502)
T ss_pred             ----HHHHHHHHH--HHHHHCCCCHH---HHHHHHHCCC--------------CCEEEEHHHCCCCCHHHHHHHHCCCCC
T ss_conf             ----399999998--99986188432---4653322047--------------754765443178738999997127861


Q ss_pred             HHHHHHHHHHHHHHHH---HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHH----------HHHHHH--
Q ss_conf             5689999999999989---7448661787862289802895357434031216989999999----------766999--
Q gi|254780623|r  263 LERLSVTLVQSFLLHT---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLA----------EILYGF--  327 (517)
Q Consensus       263 ~~~la~~l~~~~~~qi---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~----------~l~~a~--  327 (517)
                      -.+++..+-. -++-+   -.-.-.|-|-.+|||++..+|---+-|||..|.|+..+...=.          +.+.-+  
T Consensus       128 E~EIs~iL~~-TLKGL~YLH~~~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI~EIGY  206 (502)
T KOG0574         128 EQEISAVLRD-TLKGLQYLHDLKKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIEEIGY  206 (502)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHCC
T ss_conf             8899999999-886789999999987431126278746441455412532013566775174026753236899999665


Q ss_pred             -HCCCHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHH-HHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             -71872789999998412-66778936899999985210013343331135689-9999754527971288899999999
Q gi|254780623|r  328 -ISRDYQRVADVHFEAGY-VPRHHNRFSFAQAIRAIGEPIHGQSSDVISMGKLL-TMLFEITELFDMMTRPELVMLQKTM  404 (517)
Q Consensus       328 -~~~D~~~~~~~l~~lg~-~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~P~~~~ll~r~l  404 (517)
                       ...|...+.-..++|+. .+|..|...++.    ++- +-..|.-.+.-.+.+ .++.+..+..=+.-|.+-..   ++
T Consensus       207 ~~~ADIWSLGITaIEMAEG~PPYsDIHPMRA----IFM-IPT~PPPTF~KPE~WS~~F~DFi~~CLiK~PE~R~T---A~  278 (502)
T KOG0574         207 DTKADIWSLGITAIEMAEGRPPYSDIHPMRA----IFM-IPTKPPPTFKKPEEWSSEFNDFIRSCLIKKPEERKT---AL  278 (502)
T ss_pred             CHHHHHHHHCCHHHHHHCCCCCCCCCCCCCE----EEE-CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHH---HH
T ss_conf             2166677503201023158998554460021----575-568989877886665457899999986189888788---99


Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             998849987688988899999999
Q gi|254780623|r  405 VVVEGVARMLNPEFNMWVSSEPIV  428 (517)
Q Consensus       405 ~~lEG~~~~LdP~~d~~~~~~p~~  428 (517)
                      -.+|-.--+=.|..|++.....-+
T Consensus       279 ~L~~H~FiknA~g~~I~~~~I~~A  302 (502)
T KOG0574         279 RLCEHTFIKNAPGCDIMQLMIQDA  302 (502)
T ss_pred             HHHHCHHHCCCCCCHHHHHHHHHH
T ss_conf             985343432799641999999999


No 264
>cd05108 PTKc_EGFR Catalytic Domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor
Probab=98.49  E-value=1.9e-06  Score=69.21  Aligned_cols=146  Identities=16%  Similarity=0.146  Sum_probs=88.1

Q ss_pred             HHH--HHHHHHHHHHHHHHHEECCCCCCE----EEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf             867--666778888655550212888723----68764031046887777889998753211468543346917999999
Q gi|254780623|r  122 EFD--DPIAAASIAQVHPAVVHDINGYRK----VAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL  195 (517)
Q Consensus       122 ~fd--ePlasASiaQVh~A~l~d~~~g~~----VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~  195 (517)
                      .|+  +.|++|+-|.||+|....  +|+.    ||||..++....                             .     
T Consensus         8 dy~~~~~LG~G~fG~Vykg~~~~--~g~~~~~~VAvK~l~~~~~~-----------------------------~-----   51 (316)
T cd05108           8 EFKKIKVLGSGAFGTVYKGLWIP--EGEKVKIPVAIKELREATSP-----------------------------K-----   51 (316)
T ss_pred             HCEECEEEECCCCCEEEEEEEEC--CCCEEEEEEEEEEECCCCCH-----------------------------H-----
T ss_conf             59554087118784999689947--99888689999996644587-----------------------------8-----


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCH-HCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHH---HHHHH
Q ss_conf             98878886559999889872024467766430000102-217833530024786324267733200225689---99999
Q gi|254780623|r  196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWN-RTERDVITMEWIDGVKISDTEKLRACGHDLERL---SVTLV  271 (517)
Q Consensus       196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~-~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~l---a~~l~  271 (517)
                           .+-+|.+|+..+.+++.     |.  |-+.|.- .+....++|||++|-.+.+.-.-.......+.+   +..++
T Consensus        52 -----~~~~~~~E~~il~~l~H-----pn--IV~l~g~~~~~~~~lv~e~~~~G~L~~~l~~~~~~l~~~~~~~~~~qia  119 (316)
T cd05108          52 -----ANKEILDEAYVMASVDN-----PH--VCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIA  119 (316)
T ss_pred             -----HHHHHHHHHHHHHHCCC-----CC--EEEEEEEEEECCEEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             -----99999999999986799-----88--8579999974885899997799888999976147879999999999999


Q ss_pred             HHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHH
Q ss_conf             999998974486617878622898028953574340312169899
Q gi|254780623|r  272 QSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRE  316 (517)
Q Consensus       272 ~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~  316 (517)
                      .+ +.-+-..|+.|-|.-|.||+++.++.+-+.|||+...+....
T Consensus       120 ~g-L~yLH~~~IIHRDLKp~NILl~~~~~vKI~DFGlak~~~~~~  163 (316)
T cd05108         120 KG-MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEE  163 (316)
T ss_pred             HH-HHHHHHCCEECCCCCCCEEEECCCCCEEEEECCCCEECCCCC
T ss_conf             99-999997793215666111668899968996547656678988


No 265
>cd07859 STKc_TDY_MAPK_plant The catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved 
Probab=98.49  E-value=5.5e-07  Score=73.31  Aligned_cols=139  Identities=17%  Similarity=0.217  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-|+.||-|.||+|+=.  .+|+.||||+.+.....                           .    .       ....
T Consensus         6 ~~IG~G~fG~V~~a~~~--~tg~~vAiK~i~~~~~~---------------------------~----~-------~~~~   45 (338)
T cd07859           6 EVIGKGSYGVVCSAIDT--HTGEKVAIKKINDVFEH---------------------------V----S-------DATR   45 (338)
T ss_pred             EEEECCCCEEEEEEEEC--CCCCEEEEEEECCHHCC---------------------------H----H-------HHHH
T ss_conf             59742728499999988--99989999998812308---------------------------5----7-------8999


Q ss_pred             HHHHHHHHHHHHCCCCCCCC-CCCHHCCCHHC----CCCEEEEECCCCCCCCHHHHHHHH-CCCH---HHHHHHHHHHHH
Q ss_conf             59999889872024467766-43000010221----783353002478632426773320-0225---689999999999
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQG-FRVPKIDWNRT----ERDVITMEWIDGVKISDTEKLRAC-GHDL---ERLSVTLVQSFL  275 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~s----t~~VLvmE~i~G~~i~d~~~l~~~-~~d~---~~la~~l~~~~~  275 (517)
                      +.+|.+.+..++.     |. |.+=.++..-+    ..-.+||||++| .+.+.  ++.. ....   +.++..++.+ +
T Consensus        46 ~~~Ei~il~~l~H-----pnIv~~~~~~~~~~~~~~~~~yiv~e~~~~-~L~~~--i~~~~~l~~~~~~~~~~Qil~a-L  116 (338)
T cd07859          46 ILREIKLLRLLRH-----PDIVEIKHIMLPPSRREFKDIYVVFELMES-DLHQV--IKANDDLTPEHHQFFLYQLLRA-L  116 (338)
T ss_pred             HHHHHHHHHHCCC-----CCCCCEEEEEECCCCCCCCEEEEEEEECCC-CHHHH--HHHCCCCCHHHHHHHHHHHHHH-H
T ss_conf             9999999986799-----598848899951786656658999970598-47888--7626999999999999999999-9


Q ss_pred             HHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC
Q ss_conf             9897448661787862289802895357434031216
Q gi|254780623|r  276 LHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL  312 (517)
Q Consensus       276 ~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l  312 (517)
                      .-+-..|+.|-|.-|.||+++.+|++-+.|||+....
T Consensus       117 ~ylH~~~IiHRDLKPeNIL~~~~~~vKl~DFGlar~~  153 (338)
T cd07859         117 KYIHTANVFHRDLKPKNILANADCKLKICDFGLARVA  153 (338)
T ss_pred             HHHHHCCCEEECCCHHEEEECCCCCEEECCCCEEEEE
T ss_conf             9997878843005431078868997652135513565


No 266
>cd07872 STKc_PCTAIRE2 The catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could 
Probab=98.48  E-value=6.8e-07  Score=72.58  Aligned_cols=135  Identities=17%  Similarity=0.278  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-|+.||-|.||+|+-+.  +|+.||+|+.+-.-.                     ..            ....      
T Consensus        12 ~~iG~G~fg~V~~a~~~~--t~~~vAiK~i~~~~~---------------------~~------------~~~~------   50 (309)
T cd07872          12 EKLGEGTYATVFKGRSKL--TENLVALKEIRLEHE---------------------EG------------APCT------   50 (309)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHHC---------------------CC------------HHHH------
T ss_conf             586148592999999889--997999999853222---------------------21------------4899------


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHHHC--CCH---HHHHHHHHHHHHHH
Q ss_conf             5999988987202446776643000010221--7833530024786324267733200--225---68999999999998
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRACG--HDL---ERLSVTLVQSFLLH  277 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~~~--~d~---~~la~~l~~~~~~q  277 (517)
                      ..+|++.+..++.     +.|  =+.|.-+.  ..-.|||||++| .+.+.  +...+  .+.   +.++..++.+ +.-
T Consensus        51 ~~~Ei~il~~l~H-----pnI--V~l~~~~~~~~~~~lv~Ey~~~-~L~~~--l~~~~~~~~~~~~~~~~~qil~a-l~y  119 (309)
T cd07872          51 AIREVSLLKDLKH-----ANI--VTLHDIVHTDKSLTLVFEYLDK-DLKQY--MDDCGNIMSMHNVKIFLYQILRG-LAY  119 (309)
T ss_pred             HHHHHHHHHHCCC-----CCE--EEEEEEEEECCEEEEEEECCCC-CHHHH--HHHCCCCCCHHHHHHHHHHHHHH-HHH
T ss_conf             9999999986789-----898--4177899659979999963477-78999--99728889999999999999999-999


Q ss_pred             HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             9744866178786228980289535743403121
Q gi|254780623|r  278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                      +-..|+.|-|.-|.||+++.+|.+-+.|||+...
T Consensus       120 lH~~~IiHRDiKPeNILl~~~g~vKl~DFGla~~  153 (309)
T cd07872         120 CHRRKVLHRDLKPQNLLINERGELKLADFGLARA  153 (309)
T ss_pred             HHHCCEEECCCCCHHEEECCCCCEEEEEECCCHH
T ss_conf             9978916455750316887889787504333110


No 267
>cd07863 STKc_CDK4 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiqu
Probab=98.47  E-value=4.8e-07  Score=73.74  Aligned_cols=146  Identities=21%  Similarity=0.241  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|++||-|.||+|+-.+  +|+.||||+.+.....                    .            ......     
T Consensus         6 ~~iG~G~fg~V~~~~~~~--~~~~vAiK~i~~~~~~--------------------~------------~~~~~~-----   46 (288)
T cd07863           6 AEIGVGAYGTVYKARDPH--SGHFVALKSVRVQTNE--------------------D------------GLPLST-----   46 (288)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCCC--------------------C------------HHHHHH-----
T ss_conf             484123085999999889--9979999998320044--------------------3------------447999-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCC-CCCHHCCCH----HCCCCEEEEECCCCCCCCHH-HHHHHHCCCHH---HHHHHHHHHHH
Q ss_conf             59999889872024467766-430000102----21783353002478632426-77332002256---89999999999
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQG-FRVPKIDWN----RTERDVITMEWIDGVKISDT-EKLRACGHDLE---RLSVTLVQSFL  275 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~----~st~~VLvmE~i~G~~i~d~-~~l~~~~~d~~---~la~~l~~~~~  275 (517)
                       .+|...+++++. + +.|. |.+=.++..    ..+.-.+||||++| .+.+. ......+...+   .++..++.+. 
T Consensus        47 -~rEi~~l~~l~~-~-~Hpniv~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~i~~~~~qil~aL-  121 (288)
T cd07863          47 -VREVALLKRLEA-F-DHPNIVRLMDVCATSRTDRETKVTLVFEHVDQ-DLRTYLDKVPPPGLPAETIKDLMRQFLRGL-  121 (288)
T ss_pred             -HHHHHHHHHHHH-C-CCCCEEEEEEEEEECCCCCCCEEEEEEECCCC-CHHHHHHHCCCCCCCHHHHHHHHHHHHHHH-
T ss_conf             -999999998755-6-89998989777620355776269999962798-689999845689999999999999999999-


Q ss_pred             HHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             989744866178786228980289535743403121698
Q gi|254780623|r  276 LHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       276 ~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      .-+-..|++|-|.-|.||+++.+|++.+.|||+....+.
T Consensus       122 ~ylH~~~IiHRDiKp~NIll~~~~~vkl~DFG~a~~~~~  160 (288)
T cd07863         122 DFLHANCIVHRDLKPENILVTSGGQVKLADFGLARIYSC  160 (288)
T ss_pred             HHHHHCCEEECCCCHHHEEECCCCCEEEEECCCCCCCCC
T ss_conf             999978906775661120466899689843360010567


No 268
>cd07838 STKc_CDK4_6_like The catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are 
Probab=98.47  E-value=9.8e-08  Score=79.10  Aligned_cols=144  Identities=19%  Similarity=0.289  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.||.|+-|.||+|+-+.  +|+.||||+.+....+    |                            +......+|++
T Consensus         5 ~~lG~G~fg~V~~~~~~~--~~~~vAvK~i~~~~~~----~----------------------------~~~~~~~~Ei~   50 (287)
T cd07838           5 AEIGEGAYGTVYKARDLH--DGRFVALKKVRVPLSE----E----------------------------GIPLSTLREIA   50 (287)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEECHHCC----C----------------------------HHHHHHHHHHH
T ss_conf             997237080999999889--9979999998201021----0----------------------------55899999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCC-CCHHCCCHHC--C--CCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             599998898720244677664-3000010221--7--8335300247863242677332002256899999999999897
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGF-RVPKIDWNRT--E--RDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v-~vP~vy~~~s--t--~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~  279 (517)
                            .++.+.. + +.|.| .+=.++....  +  .=.+||||++| .+.+.  ++..+  ...+.+..+..|+.|++
T Consensus        51 ------~l~~l~~-~-~HpnIv~~~~~~~~~~~~~~~~~~lvmE~~~~-dL~~~--l~~~~--~~~~~e~~i~~~~~qil  117 (287)
T cd07838          51 ------LLKQLES-F-EHPNIVRLLDVCHGPRTDRELKLTLVFEHVDQ-DLATY--LSKCP--KPGLPPETIKDLMRQLL  117 (287)
T ss_pred             ------HHHHHHH-C-CCCCEEEEEEEEECCCCCCCCEEEEEEECCCC-CHHHH--HHHCC--CCCCCHHHHHHHHHHHH
T ss_conf             ------9997626-5-99989889999830467777469999937998-89999--98666--78979999999999999


Q ss_pred             -------HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             -------448661787862289802895357434031216989
Q gi|254780623|r  280 -------RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       280 -------~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                             ..|+.|.|.-|.||+++.+|++-+.|||+...++..
T Consensus       118 ~al~yLH~~gIiHRDlKpeNIll~~~~~iKl~DFGla~~~~~~  160 (287)
T cd07838         118 RGLDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGLARIYSFE  160 (287)
T ss_pred             HHHHHHHHCCEEECCCCHHHEEECCCCCEEECCCCCCEECCCC
T ss_conf             9999999799554627789979879998897146645444688


No 269
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=98.47  E-value=6.3e-07  Score=72.84  Aligned_cols=254  Identities=11%  Similarity=0.108  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +=|+.||-|.|+.|+-+.  +|+.||||+..-.  ..-..|...                              ...|.+
T Consensus        38 kVIGrGsFGkVyLar~k~--tG~lvAvK~I~l~--~ms~kd~~~------------------------------a~~EV~   83 (496)
T PTZ00283         38 RVLGSGATGTVLCAKRVS--DGEPFAVKVVDME--GMSEADKNR------------------------------AQAEVC   83 (496)
T ss_pred             EEEEECCCEEEEEEEECC--CCCEEEEEEEECC--CCCHHHHHH------------------------------HHHHHH
T ss_conf             899828987999999979--9978999998403--378688999------------------------------999999


Q ss_pred             HHHHHH--HHHHHHCCCCCCCCCCCHHCCCHHCCC-CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH---
Q ss_conf             599998--898720244677664300001022178-33530024786324267733200225689999999999989---
Q gi|254780623|r  205 LRLEAA--AFSEMAENTVKDQGFRVPKIDWNRTER-DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT---  278 (517)
Q Consensus       205 ~~~Ea~--n~~~~~~~~~~~~~v~vP~vy~~~st~-~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi---  278 (517)
                      .....+  |.-++.+.|.....      ..+.+.. =.+||||++|-.+.+.  ++..+...+.+.+.-+..|+.|+   
T Consensus        84 iL~~l~HpnIVkl~e~Fv~~d~------~~~e~~~~LyIVMEY~~GGdL~~~--I~~r~k~~~~f~E~~a~~~~~Qi~~a  155 (496)
T PTZ00283         84 CLLNCDFFSIVKCHEDFAKKDP------RNPENVLMIALVLDYANAGDLRQE--IKSRAKTNRTFREHEAGLLFIQVLLA  155 (496)
T ss_pred             HHHHCCCCCEEEEEHHHCCCCC------CCCCCCCEEEEEEECCCCCCHHHH--HHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             9972899875455553210575------555565479999925899857999--99865427887899999999999999


Q ss_pred             ----HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             ----7448661787862289802895357434031216989999999766999718727899999984126677893689
Q gi|254780623|r  279 ----LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSF  354 (517)
Q Consensus       279 ----~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~  354 (517)
                          -..|+.|=|.-|.||+++.+|.+-+.|||+...++......++.-+   +---+...-+.+..-++ ...+|.=.+
T Consensus       156 l~ylH~~~iiHRDlK~~Nill~~~g~vKl~DFG~sk~~~~~~~~~~a~T~---~GTP~Y~aPEi~~~~~Y-~~ksDiWSL  231 (496)
T PTZ00283        156 VHHVHSKHMIHRDIKSANILLCSNGLVKLGDFGFSKMYAATVSDDVGRTF---CGTPYYVAPEIWRRKPY-SKKADMFSL  231 (496)
T ss_pred             HHHHHHCCCCCCCCCHHHEEECCCCCEEECCCCCCHHCCCCCCCCCCCCC---CCCHHHCCHHHHCCCCC-CCHHHHHHH
T ss_conf             99999789241447776678868998898756520213544566644556---68821159999889998-948878878


Q ss_pred             HHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC--CHHHHH-HHHHHHH
Q ss_conf             9999985210013343331135689999975452797128889999999999884998768898--889999-9999999
Q gi|254780623|r  355 AQAIRAIGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVARMLNPEF--NMWVSS-EPIVEEW  431 (517)
Q Consensus       355 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~~~ll~r~l~~lEG~~~~LdP~~--d~~~~~-~p~~~~~  431 (517)
                      ---+.+++.-  ..|+.--++.++...+..   -..-.+|+.+.-=+|.++   ....+.||+-  +.-+.. .||.+..
T Consensus       232 GviLYEm~t~--~~PF~g~~~~~L~~kI~~---G~~~piP~~yS~el~~lv---~~mL~~dP~~RPs~~~lL~~P~~k~~  303 (496)
T PTZ00283        232 GVLLYELLTL--KRPFDGENMEEVMHKTLA---GRYDPLPPSISPEMQEIV---TALLSSDPKRRPSSSKLLNMPICKLF  303 (496)
T ss_pred             HHHHHHHHHC--CCCCCCCCHHHHHHHHHC---CCCCCCCCCCCHHHHHHH---HHHHCCCCCCCCCHHHHHHCHHHHHH
T ss_conf             9999999758--899899999999999966---888999721099999999---99823492207199999745589999


Q ss_pred             H
Q ss_conf             9
Q gi|254780623|r  432 I  432 (517)
Q Consensus       432 l  432 (517)
                      +
T Consensus       304 ~  304 (496)
T PTZ00283        304 I  304 (496)
T ss_pred             H
T ss_conf             9


No 270
>cd05045 PTKc_RET Catalytic Domain of the Protein Tyrosine Kinase, REarranged during Transfection protein. Protein Tyrosine Kinase (PTK) family; RET (rearranged during transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi
Probab=98.47  E-value=2.6e-06  Score=68.11  Aligned_cols=142  Identities=13%  Similarity=0.164  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHEEC---CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             6778888655550212---8887236876403104688777788999875321146854334691799999998878886
Q gi|254780623|r  127 IAAASIAQVHPAVVHD---INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM  203 (517)
Q Consensus       127 lasASiaQVh~A~l~d---~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El  203 (517)
                      |++||-|.||+|+...   ..+++.||||+.+.+..+                                .+       .-
T Consensus         3 iG~G~fG~Vyk~~~~~~~~~~~~~~vAvK~l~~~~~~--------------------------------~~-------~~   43 (285)
T cd05045           3 LGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASS--------------------------------SE-------LR   43 (285)
T ss_pred             CCCCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCCH--------------------------------HH-------HH
T ss_conf             3448896899999805677658989999997767997--------------------------------99-------99


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCC-CCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHH-----------------------H
Q ss_conf             5599998898720244677664-300001022178335300247863242677332-----------------------0
Q gi|254780623|r  204 DLRLEAAAFSEMAENTVKDQGF-RVPKIDWNRTERDVITMEWIDGVKISDTEKLRA-----------------------C  259 (517)
Q Consensus       204 D~~~Ea~n~~~~~~~~~~~~~v-~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~-----------------------~  259 (517)
                      +|.+|++.+.+++.     |.| .+=.++.+ ...-.|||||++|-.+.+.-....                       .
T Consensus        44 ~~~~E~~~l~~l~H-----pNIV~~~g~~~~-~~~~~lv~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (285)
T cd05045          44 DLLSEFNLLKQVNH-----PHVIKLYGACSQ-DGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDER  117 (285)
T ss_pred             HHHHHHHHHHHCCC-----CCEEEEEEEEEE-CCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999999986799-----887307999978-997799997478992999999733346432233222232112464334


Q ss_pred             CCCHH---HHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             02256---89999999999989744866178786228980289535743403121698
Q gi|254780623|r  260 GHDLE---RLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       260 ~~d~~---~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      ....+   .++..+++. +.=+-..|+.|.|.-|.||+++.++.+-+-|||....+..
T Consensus       118 ~l~~~~~~~~a~qia~g-l~yLH~~~iiHRDlK~~NILl~~~~~~Ki~DFGls~~~~~  174 (285)
T cd05045         118 ALTMGDLISFAWQISRG-MQYLAEMKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYE  174 (285)
T ss_pred             CCCHHHHHHHHHHHHHH-HHHHHHCCCEECCCCCCEEEECCCCCEEEECCCCCCCCCC
T ss_conf             77899999999999999-9998748906056774728886899688711511101356


No 271
>cd05109 PTKc_HER2 Catalytic Domain of the Protein Tyrosine Kinase, HER2. Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve
Probab=98.47  E-value=1.3e-06  Score=70.30  Aligned_cols=141  Identities=15%  Similarity=0.120  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCC----EEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872----36876403104688777788999875321146854334691799999998878
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYR----KVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTK  200 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~----~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~  200 (517)
                      +.|++||-|.||+|+..+  .|+    +||||+.+.+......                                     
T Consensus        13 k~iG~G~fG~Vy~g~~~~--~~~~~~~~vavK~l~~~~~~~~~-------------------------------------   53 (279)
T cd05109          13 KVLGSGAFGTVYKGIWIP--DGENVKIPVAIKVLRENTSPKAN-------------------------------------   53 (279)
T ss_pred             EEEECCCCCEEEEEEECC--CCCEEEEEEEEEEECCCCCHHHH-------------------------------------
T ss_conf             598017891999789918--99888689999998845798999-------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCC-CCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHH---HHHHHHHHHHHH
Q ss_conf             886559999889872024467766-4300001022178335300247863242677332002256---899999999999
Q gi|254780623|r  201 MEMDLRLEAAAFSEMAENTVKDQG-FRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLE---RLSVTLVQSFLL  276 (517)
Q Consensus       201 ~ElD~~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~l~~~~~~  276 (517)
                        -+|.+|+..+.+++.     |. +.+=.+.  .+..-.+||||+++-.+.+.-.-.....+..   .++..++.+. .
T Consensus        54 --~~~~~E~~il~~l~h-----pnIv~~~g~~--~~~~~~lv~e~~~~G~L~~~l~~~~~~~~~~~~~~i~~qia~gl-~  123 (279)
T cd05109          54 --KEILDEAYVMAGVGS-----PYVCRLLGIC--LTSTVQLVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGM-S  123 (279)
T ss_pred             --HHHHHHHHHHHHCCC-----CCCCEEEEEE--EECCEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHH-H
T ss_conf             --999999999986799-----9898099999--96890799997889978999985689999999999999999999-9


Q ss_pred             HHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             89744866178786228980289535743403121698
Q gi|254780623|r  277 HTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       277 qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      -+-..|..|.|.-|.||+++.++++.+-|||+...++.
T Consensus       124 yLH~~~IiHrDlKp~NILi~~~~~~Ki~DFGls~~~~~  161 (279)
T cd05109         124 YLEEVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDI  161 (279)
T ss_pred             HHHHCCEECCCCCCCCEEECCCCCEEEEECCCCCCCCC
T ss_conf             99859901376573108988999399974477610678


No 272
>cd05036 PTKc_ALK_LTK Catalytic Domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase. Protein Tyrosine Kinase (PTK) family; Anaplastic lymphoma kinase (ALK) and Leukocyte tyrosine (tyr) kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well
Probab=98.46  E-value=7.3e-07  Score=72.34  Aligned_cols=147  Identities=15%  Similarity=0.189  Sum_probs=87.0

Q ss_pred             HHHH--HHHHHHHHHHHHHHHEECCC---CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf             9867--66677888865555021288---872368764031046887777889998753211468543346917999999
Q gi|254780623|r  121 CEFD--DPIAAASIAQVHPAVVHDIN---GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL  195 (517)
Q Consensus       121 ~~fd--ePlasASiaQVh~A~l~d~~---~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~  195 (517)
                      ++++  +.|++||-|.||+|.++..+   ....||||+.+....                                    
T Consensus         6 ~~~~i~~~iG~G~FG~Vy~g~~~~~~~~~~~~~VavK~~~~~~~------------------------------------   49 (277)
T cd05036           6 DSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCS------------------------------------   49 (277)
T ss_pred             HHEEEEEEEEECCCCEEEEEEEECCCCCCEEEEEEEEEECCCCC------------------------------------
T ss_conf             99498009830788599999996888884038999999676679------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHH------CCCHH---H
Q ss_conf             9887888655999988987202446776643-000010221783353002478632426773320------02256---8
Q gi|254780623|r  196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFR-VPKIDWNRTERDVITMEWIDGVKISDTEKLRAC------GHDLE---R  265 (517)
Q Consensus       196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~-vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~------~~d~~---~  265 (517)
                         -..+.+|.+|+.-+.+++.     |.|. +=.+.. -.+...|||||++|-.+.+.-.-...      ....+   .
T Consensus        50 ---~~~~~~f~~E~~il~~l~H-----pnIv~~~g~~~-~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~l~~~~~~~  120 (277)
T cd05036          50 ---EQDESDFLMEALIMSKFNH-----QNIVRLIGVSF-ERLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLF  120 (277)
T ss_pred             ---HHHHHHHHHHHHHHHHCCC-----CCEEEEEEEEE-ECCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf             ---8899999999999984899-----89733999998-89978999995689958999985188867665568999999


Q ss_pred             HHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCC---EEEEECCHHEECC
Q ss_conf             99999999999897448661787862289802895---3574340312169
Q gi|254780623|r  266 LSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGY---IVAVDMGITGRLS  313 (517)
Q Consensus       266 la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~---i~~lDfG~vg~l~  313 (517)
                      ++..++.. +.-+-..|+.|.|.-|.||+++.+|.   +-+-|||+...+.
T Consensus       121 i~~~ia~g-l~yLH~~~ivHrDlKp~NiLl~~~g~~~~~Ki~DFGls~~~~  170 (277)
T cd05036         121 CARDVAKG-CKYLEENHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIY  170 (277)
T ss_pred             HHHHHHHH-HHHHHHCCCCCCCCCHHHEEEECCCCCCEEEEEECCCCCCCC
T ss_conf             99999999-999987991568775562899068998558999767741156


No 273
>cd05043 PTK_Ryk Pseudokinase Domain of the Receptor related to tyrosine kinase. Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It ac
Probab=98.46  E-value=4.9e-06  Score=65.98  Aligned_cols=147  Identities=11%  Similarity=0.138  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHHHHHEECCCC--CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             67666778888655550212888--7236876403104688777788999875321146854334691799999998878
Q gi|254780623|r  123 FDDPIAAASIAQVHPAVVHDING--YRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTK  200 (517)
Q Consensus       123 fdePlasASiaQVh~A~l~d~~~--g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~  200 (517)
                      +.+-||+||-|+||+|++.+.+.  .+.||||....+..+.                                       
T Consensus        10 l~~~iG~G~FG~Vy~g~~~~~~~~~~~~vavK~~~~~~~~~---------------------------------------   50 (280)
T cd05043          10 LSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEI---------------------------------------   50 (280)
T ss_pred             EEEEEEECCCCEEEEEEEECCCCCCEEEEEEEEECCCCCHH---------------------------------------
T ss_conf             89999607897999999948986402799999946768989---------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCC-CHHCCCHHCCCCEEEEECCCCCCCCHHHHHH-------HHCCCHHH---HHHH
Q ss_conf             88655999988987202446776643-0000102217833530024786324267733-------20022568---9999
Q gi|254780623|r  201 MEMDLRLEAAAFSEMAENTVKDQGFR-VPKIDWNRTERDVITMEWIDGVKISDTEKLR-------ACGHDLER---LSVT  269 (517)
Q Consensus       201 ~ElD~~~Ea~n~~~~~~~~~~~~~v~-vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~-------~~~~d~~~---la~~  269 (517)
                      +.-.|.+|+..+..++.     |.|. +=.+..+-+..-.++|||++|-.+.+.-.-.       ....+.+.   ++..
T Consensus        51 ~~~~~~~E~~~l~~l~H-----pNIv~~~g~~~~~~~~~~iv~ey~~~G~L~~~l~~~~~~~~~~~~~l~~~~~~~~~~q  125 (280)
T cd05043          51 QVTLLLQESCLLYGLSH-----QNILPILHVCIEDGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQ  125 (280)
T ss_pred             HHHHHHHHHHHHHHCCC-----CCCCCEEEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             99999999999985899-----8988388999988970499999279991999987334565456777899999999999


Q ss_pred             HHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             999999989744866178786228980289535743403121698
Q gi|254780623|r  270 LVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       270 l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      ++.+ +.-+-..|+.|.|.-|.||+++.++++-+-|||+...+.+
T Consensus       126 ia~g-l~yLH~~~ivHRDLK~~NiLl~~~~~vKi~DFGla~~~~~  169 (280)
T cd05043         126 IACG-MSYLHKRGVIHKDIAARNCVIDEELQVKITDNALSRDLFP  169 (280)
T ss_pred             HHHH-HHHHHHCCEECCCCCCCCEEECCCCCEEEEECCCCEECCC
T ss_conf             9999-9999759935451250316998999789930546644467


No 274
>KOG0611 consensus
Probab=98.45  E-value=2.9e-06  Score=67.73  Aligned_cols=227  Identities=19%  Similarity=0.206  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             86766677888865555021288872368764031046887777889998753211468543346917999999988788
Q gi|254780623|r  122 EFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKM  201 (517)
Q Consensus       122 ~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~  201 (517)
                      +|.|-++++.-|-|-+|+-+-  +|+.||||-.|-+-.+. +.||--+                                
T Consensus        56 E~~etLGkGTYGKVk~A~e~~--sgR~VAiKsIrKdkIkd-eqDlvhI--------------------------------  100 (668)
T KOG0611          56 EITETLGKGTYGKVKLAYEHK--SGREVAIKSIRKDKIKD-EQDLVHI--------------------------------  100 (668)
T ss_pred             HHHHHHCCCCCCCEEEHHHCC--CCCEEEHHHHHHHHCCC-HHHHHHH--------------------------------
T ss_conf             899875477632143300214--78575333545542113-7788999--------------------------------


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH--
Q ss_conf             865599998898720244677664300001022178335300247863242677332002256899999999999897--
Q gi|254780623|r  202 EMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL--  279 (517)
Q Consensus       202 ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~--  279 (517)
                          ++|.+-|.-    +..-.-|.|=.||. -+.+-||||||-.|--+.|.-.      .+..|.++-.+-||+||.  
T Consensus       101 ----RREIeIMSs----LNHPhII~IyEVFE-NkdKIvivMEYaS~GeLYDYiS------er~~LsErEaRhfFRQIvSA  165 (668)
T KOG0611         101 ----RREIEIMSS----LNHPHIIQIYEVFE-NKDKIVIVMEYASGGELYDYIS------ERGSLSEREARHFFRQIVSA  165 (668)
T ss_pred             ----HHHHHHHHH----CCCCCEEEHHHHHC-CCCEEEEEEEECCCCCHHHHHH------HHCCCCHHHHHHHHHHHHHH
T ss_conf             ----999999862----48976553123342-7761899998447860889887------74553378899999999999


Q ss_pred             -----HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             -----448661787862289802895357434031216989999999766999718727899999984126677893689
Q gi|254780623|r  280 -----RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSF  354 (517)
Q Consensus       280 -----~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~  354 (517)
                           .+++.|-|..--||+++.++.+-+-|||.---.    ..  -++++-+.---...--+.+..--+..+.+|-=.+
T Consensus       166 VhYCHknrVvHRDLKLENILLD~N~NiKIADFGLSNly----~~--~kfLqTFCGSPLYASPEIvNG~PY~GPEVDsWsL  239 (668)
T KOG0611         166 VHYCHKNRVVHRDLKLENILLDQNNNIKIADFGLSNLY----AD--KKFLQTFCGSPLYASPEIVNGTPYKGPEVDSWSL  239 (668)
T ss_pred             HHHHHHCCCEECCCCHHHEEECCCCCEEEECCCHHHHH----CC--CCHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             99986245000100054413237897455304305554----12--2078875388554784000787777876332567


Q ss_pred             HHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf             99999852100133433311356899999754527971288899999999998
Q gi|254780623|r  355 AQAIRAIGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVV  407 (517)
Q Consensus       355 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~~~ll~r~l~~l  407 (517)
                      ---+..++  |...|++..+...++.++-.-+++-+- .|++-..++|-++.+
T Consensus       240 GvLLYtLV--yGtMPFDG~Dhk~lvrQIs~GaYrEP~-~PSdA~gLIRwmLmV  289 (668)
T KOG0611         240 GVLLYTLV--YGTMPFDGRDHKRLVRQISRGAYREPE-TPSDASGLIRWMLMV  289 (668)
T ss_pred             HHHHHHHH--HCCCCCCCCHHHHHHHHHHCCCCCCCC-CCCHHHHHHHHHHHC
T ss_conf             77999886--246666872089999986345545899-972178999998860


No 275
>cd06616 PKc_MKK4 Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specif
Probab=98.45  E-value=9e-07  Score=71.65  Aligned_cols=145  Identities=20%  Similarity=0.238  Sum_probs=80.3

Q ss_pred             HHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             867--666778888655550212888723687640310468877778899987532114685433469179999999887
Q gi|254780623|r  122 EFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT  199 (517)
Q Consensus       122 ~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  199 (517)
                      .|+  +-|+.||-|.||+|.-+.  +|+.||||+.+-.....   +                              ...+
T Consensus         5 d~~~l~~lG~G~fg~V~~~~~~~--~~~~~AiK~i~~~~~~~---~------------------------------~~~~   49 (288)
T cd06616           5 DLKDLGEIGRGAFGTVNKMLHKP--SGTIMAVKRIRSTVDEK---E------------------------------QKRL   49 (288)
T ss_pred             HCEECCEEECCCCEEEEEEEECC--CCCEEEEEEECCCCCHH---H------------------------------HHHH
T ss_conf             98883286138785999999889--99699999988014918---9------------------------------9999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHH---HHHCCCHHH----HHHHH
Q ss_conf             88865599998898720244677664300001022--1783353002478632426773---320022568----99999
Q gi|254780623|r  200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKL---RACGHDLER----LSVTL  270 (517)
Q Consensus       200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l---~~~~~d~~~----la~~l  270 (517)
                            ..|...+.+..    +.|.|  =+.|.-+  .+.-.++|||++|. +.+....   ...+.-...    ++..+
T Consensus        50 ------~~e~~~l~~~~----~hpnI--v~~~~~~~~~~~~~ivme~~~~~-l~~~~~~~~~~~~~~~~e~~~~~~~~qi  116 (288)
T cd06616          50 ------LMDLDVVMRSS----DCPYI--VKFYGALFREGDCWICMELMDIS-LDKFYKYVYEVLKSVIPEEILGKIAVAT  116 (288)
T ss_pred             ------HHHHHHHHHHC----CCCCE--EEEEEEEEECCEEEEEEEECCCC-HHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             ------99999999836----99988--88988998789179999982898-8999999987316899999999999999


Q ss_pred             HHHHHHHHHHC-CEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             99999989744-8661787862289802895357434031216989
Q gi|254780623|r  271 VQSFLLHTLRD-GFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       271 ~~~~~~qi~~~-GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      +.+.- -+-.. |+.|-|.-|.||+++.+|.+-+.|||+.+.+.+.
T Consensus       117 ~~al~-ylH~~~~IiHRDlKp~NILl~~~~~iKl~DFGla~~l~~~  161 (288)
T cd06616         117 VKALN-YLKEELKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDS  161 (288)
T ss_pred             HHHHH-HHHHCCCEECCCCCHHHEEECCCCCEEEEECCCCCCCCCC
T ss_conf             99999-9987289841667601132889997899968885435777


No 276
>cd07854 STKc_MAPK4_6 The catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6 subfamily. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell c
Probab=98.43  E-value=4.2e-07  Score=74.19  Aligned_cols=145  Identities=21%  Similarity=0.274  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCH---HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             666778888655550212888723687640310---46887777889998753211468543346917999999988788
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPG---VRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKM  201 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~---i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~  201 (517)
                      ++||+||-|.||+|+-+.  +|+.||||...-.   -.+.+...+++++.+.                            
T Consensus        11 ~~LG~G~fG~V~~a~~~~--t~~~vAiK~i~~~~~~~~~~~~rEi~il~~l~----------------------------   60 (342)
T cd07854          11 RPLGCGSNGLVFSAVDSD--CDKRVAVKKIVLTDPQSVKHALREIKIIRRLD----------------------------   60 (342)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEECCCHHHHHHHHHHHHHHHHCC----------------------------
T ss_conf             894217480999999889--99899999997389888999999999998679----------------------------


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-
Q ss_conf             86559999889872024467766430000102217--833530024786324267733200225689999999999989-
Q gi|254780623|r  202 EMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT-  278 (517)
Q Consensus       202 ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi-  278 (517)
                             -.|.-++.+.+.+.. -..+..+..++.  .-.+||||++|. +.+.  ++..     .+.+..+..++.|+ 
T Consensus        61 -------H~nIv~~~~~~~~~~-~~~~~~~~~~~~~~~~~iv~e~~~~~-L~~~--~~~~-----~l~e~~i~~~~~Qil  124 (342)
T cd07854          61 -------HDNIVKVYEVLGPSG-SDLTEDVGSLTELNSVYIVQEYMETD-LANV--LEQG-----PLSEEHARLFMYQLL  124 (342)
T ss_pred             -------CCCCCEEEEEEECCC-CCCCCCCCCCCCCCEEEEEEECCCCC-HHHH--HHCC-----CCCHHHHHHHHHHHH
T ss_conf             -------989890999980278-65311113222354489998077868-9999--9729-----989999999999999


Q ss_pred             ------HHCCEECCCCCCCEEEEECCC-CEEEEECCHHEECCHH
Q ss_conf             ------744866178786228980289-5357434031216989
Q gi|254780623|r  279 ------LRDGFFHADLHPGNLFVDSKG-YIVAVDMGITGRLSKR  315 (517)
Q Consensus       279 ------~~~GfFHaDPHpGNi~v~~dg-~i~~lDfG~vg~l~~~  315 (517)
                            -..|+.|-|.-|.||+++.++ .+-+.|||+...++++
T Consensus       125 ~aL~ylH~~~IiHRDiKPeNILl~~~~~~vKl~DFGla~~~~~~  168 (342)
T cd07854         125 RGLKYIHSANVLHRDLKPANVFINTEDLVLKIGDFGLARIVDPH  168 (342)
T ss_pred             HHHHHHHHCCCEECCCCHHHEEEECCCCEEEECCCCEEEECCCC
T ss_conf             99999988866526475788588379984875245013665788


No 277
>KOG0661 consensus
Probab=98.43  E-value=5.6e-07  Score=73.22  Aligned_cols=180  Identities=16%  Similarity=0.285  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-++.|+-|.|+.|+-++  +|+.||||=                  +-   .++.+                  .+|+-
T Consensus        16 ~klGDGTfGsV~la~~~~--~~~~VAIK~------------------MK---~Kf~s------------------~ee~~   54 (538)
T KOG0661          16 RKLGDGTFGSVYLAKSKE--TGELVAIKK------------------MK---KKFYS------------------WEECM   54 (538)
T ss_pred             HHHCCCCCEEEEEEEECC--CCCEEEHHH------------------HH---HHHCC------------------HHHHH
T ss_conf             873587523578753157--786433998------------------87---64236------------------99987


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----
Q ss_conf             599998898720244677664300001022178335300247863242677332002256899999999999897-----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL-----  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~-----  279 (517)
                      =.+|...+.++..   ...-|.+=+|+.|--..=-+||||++- .+-++  ++..   ++-+.+.-++.++.|||     
T Consensus        55 nLREvksL~kln~---hpniikL~Evi~d~~~~L~fVfE~Md~-NLYqL--mK~R---~r~fse~~irnim~QilqGL~h  125 (538)
T KOG0661          55 NLREVKSLRKLNP---HPNIIKLKEVIRDNDRILYFVFEFMDC-NLYQL--MKDR---NRLFSESDIRNIMYQILQGLAH  125 (538)
T ss_pred             HHHHHHHHHHCCC---CCCCHHHHHHHHCCCCEEEEEHHHHHH-HHHHH--HHHC---CCCCCHHHHHHHHHHHHHHHHH
T ss_conf             7999999974588---974030577763567537664876651-39999--8615---7768789999999999988889


Q ss_pred             --HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf             --448661787862289802895357434031216989999999766999718727899999984126677893689999
Q gi|254780623|r  280 --RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQA  357 (517)
Q Consensus       280 --~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~  357 (517)
                        .+||||-|.-|-||+|+...-|=+-|||...++...-      =+..-+.--..++-+.+++.|..+..+|.-++-.-
T Consensus       126 iHk~GfFHRDlKPENiLi~~~~~iKiaDFGLARev~Skp------PYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI  199 (538)
T KOG0661         126 IHKHGFFHRDLKPENILISGNDVIKIADFGLAREVRSKP------PYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCI  199 (538)
T ss_pred             HHHCCCCCCCCCHHHEEECCCCEEEECCCCCCCCCCCCC------CCCHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             986285325687544675364436750344322234689------84023202101361776423665772278988889


Q ss_pred             HHH
Q ss_conf             998
Q gi|254780623|r  358 IRA  360 (517)
Q Consensus       358 i~~  360 (517)
                      +.+
T Consensus       200 ~aE  202 (538)
T KOG0661         200 MAE  202 (538)
T ss_pred             HHH
T ss_conf             999


No 278
>cd05576 STKc_RPK118_like STKc_RPK118_like: Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 
Probab=98.43  E-value=2.4e-07  Score=76.07  Aligned_cols=125  Identities=14%  Similarity=0.151  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88886555502128887236876403104688777788999875321146854334691799999998878886559999
Q gi|254780623|r  130 ASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEA  209 (517)
Q Consensus       130 ASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea  209 (517)
                      ||.|+||.|+=+.  +|+.+|+|+.+-.-  ..                                           .+|.
T Consensus         4 G~fg~V~l~~~~~--t~~~~AiK~i~k~~--~~-------------------------------------------~~e~   36 (237)
T cd05576           4 GVIDKVLLVMDTR--TQQTFILKGLRKSS--EY-------------------------------------------SRER   36 (237)
T ss_pred             CCCCEEEEEEECC--CCCEEEEEEECHHH--HH-------------------------------------------HHHH
T ss_conf             8675899999879--99999999981415--57-------------------------------------------7999


Q ss_pred             HHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH-------HHH
Q ss_conf             8898720244677664300001022178--3353002478632426773320022568999999999998-------974
Q gi|254780623|r  210 AAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH-------TLR  280 (517)
Q Consensus       210 ~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q-------i~~  280 (517)
                      ..+...     ..|.  |.+.|.-+-++  -.|||||++|-.+.+.-  ...+    .+.+..+..|+.|       +-.
T Consensus        37 ~~l~~~-----~~p~--Iv~l~~~~~~~~~~ylvmEy~~gg~L~~~i--~~~~----~l~e~~~~~~~~qll~al~~lH~  103 (237)
T cd05576          37 LTIIPH-----CVPN--MVCLHKYIVSEDSVFLVLQHAEGGKLWSHI--SKFL----NIPEECVKRWAAEMVVALDALHR  103 (237)
T ss_pred             HHHHHC-----CCCC--CCEEEEEEEECCEEEEEEECCCCCCHHHHH--HHCC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             999970-----8998--676999999899999999577999489999--8759----99999999999999999999997


Q ss_pred             CCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             4866178786228980289535743403121698
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      .|+.|.|..|+||+++.+|.+.+.|||....+.+
T Consensus       104 ~~ivHrDiKPeNill~~~~~ikl~dfg~~~~~~~  137 (237)
T cd05576         104 EGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVED  137 (237)
T ss_pred             CCEEEEECCCCEEEECCCCCEEEEECCCCHHCCC
T ss_conf             8967511564317887999799976465143155


No 279
>cd05099 PTKc_FGFR4 Catalytic Domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=98.43  E-value=5.9e-07  Score=73.08  Aligned_cols=153  Identities=14%  Similarity=0.133  Sum_probs=89.4

Q ss_pred             CCHHHHHHHHH--HHHHHHHHHHHHHHHEEC-----CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             88999999867--666778888655550212-----88872368764031046887777889998753211468543346
Q gi|254780623|r  114 APIEELYCEFD--DPIAAASIAQVHPAVVHD-----INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRL  186 (517)
Q Consensus       114 ~~~~~~F~~fd--ePlasASiaQVh~A~l~d-----~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~  186 (517)
                      ..|+--++.+.  ++|++||-|+||+|.++-     ++.+..||||+.+.+..+.                         
T Consensus         5 ~~Weip~~~l~l~~~IG~G~FG~Vyka~~~g~~~~~~~~~~~VAvK~l~~~~~~~-------------------------   59 (314)
T cd05099           5 PKWEFPRDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDK-------------------------   59 (314)
T ss_pred             CCCCCCHHHEEECCEEECCCCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCHH-------------------------
T ss_conf             7674008996984598316673999988816666667643699999978667868-------------------------


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC---CCEEEEECCCCCCCCHHHHHHH-----
Q ss_conf             91799999998878886559999889872024467766430000102217---8335300247863242677332-----
Q gi|254780623|r  187 CFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE---RDVITMEWIDGVKISDTEKLRA-----  258 (517)
Q Consensus       187 ~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st---~~VLvmE~i~G~~i~d~~~l~~-----  258 (517)
                                    ..-+|.+|++.+.++.+    .+.  |-+.|. .|+   .-.+||||++|-.+.+.-....     
T Consensus        60 --------------~~~~~~~E~~~l~~l~~----Hpn--IV~l~g-~~~~~~~~~iV~Ey~~~GsL~~~L~~~~~~~~~  118 (314)
T cd05099          60 --------------DLADLISEMELMKLIGK----HKN--IINLLG-VCTQEGPLYVIVEYAAKGNLREFLRARRPPGPD  118 (314)
T ss_pred             --------------HHHHHHHHHHHHHHHCC----CCC--EEEEEE-EEEECCEEEEEEEECCCCCHHHHHHHCCCCCCC
T ss_conf             --------------99999999999986357----997--778867-896499789999917999599999863787642


Q ss_pred             ----------HCCCHH---HHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             ----------002256---8999999999998974486617878622898028953574340312169
Q gi|254780623|r  259 ----------CGHDLE---RLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       259 ----------~~~d~~---~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                                .....+   .+|..++.. +.-+-..|+.|.|.-|.||+++.++.+-+-|||+...+.
T Consensus       119 ~~~~~~~~~~~~l~~~~~~~ia~qia~g-l~yLH~~~iiHRDLK~~NILl~~~~~~Ki~DFGlar~~~  185 (314)
T cd05099         119 YTFDITKVPEEQLSFKDLVSCAYQVARG-MEYLESRRCIHRDLAARNVLVTEDNVMKIADFGLARGVH  185 (314)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCHHHEEECCCCCEEEEECCCCCCCC
T ss_conf             2222122543356999999999999999-999984899688767221628799958980242445067


No 280
>cd05100 PTKc_FGFR3 Catalytic Domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=98.40  E-value=1.4e-06  Score=70.16  Aligned_cols=152  Identities=15%  Similarity=0.177  Sum_probs=88.3

Q ss_pred             HHHHHHHHH--HHHHHHHHHHHHHHHEEC-----CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf             999999867--666778888655550212-----8887236876403104688777788999875321146854334691
Q gi|254780623|r  116 IEELYCEFD--DPIAAASIAQVHPAVVHD-----INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCF  188 (517)
Q Consensus       116 ~~~~F~~fd--ePlasASiaQVh~A~l~d-----~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~  188 (517)
                      ||--.+.++  ++|+.||.|+||+|+...     .+.+..||||+.+++..+   .|+.                     
T Consensus         7 wEi~r~~l~l~~~LG~G~FG~Vy~a~~~g~~~~~~~~~~~VAVK~l~~~~~~---~~~~---------------------   62 (334)
T cd05100           7 WELSRTRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATD---KDLS---------------------   62 (334)
T ss_pred             CEECHHHEEECCEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCCCCH---HHHH---------------------
T ss_conf             3451899697379931754389999980667666874179999997843697---9999---------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC---CCEEEEECCCCCCCCHHHHHHH-------
Q ss_conf             799999998878886559999889872024467766430000102217---8335300247863242677332-------
Q gi|254780623|r  189 SAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE---RDVITMEWIDGVKISDTEKLRA-------  258 (517)
Q Consensus       189 ~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st---~~VLvmE~i~G~~i~d~~~l~~-------  258 (517)
                                     +|.+|++.+..+.+    .+.|.  +.|. .|+   .-.+||||++|-.+.+.-....       
T Consensus        63 ---------------~~~~E~~~l~~l~~----HpNIV--~l~g-~~~~~~~l~iv~Ey~~~GsL~~~L~~~~~~~~~~~  120 (334)
T cd05100          63 ---------------DLVSEMEMMKMIGK----HKNII--NLLG-ACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYS  120 (334)
T ss_pred             ---------------HHHHHHHHHHHHCC----CCCCC--EEEE-EEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCCC
T ss_conf             ---------------99999999986448----99975--5999-99889989999980799959999985287764433


Q ss_pred             --------HCCCHHH---HHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             --------0022568---9999999999989744866178786228980289535743403121698
Q gi|254780623|r  259 --------CGHDLER---LSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       259 --------~~~d~~~---la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                              .....+.   ++..++. -+.-+-..++.|.|.-|.||+++.++.+-+-|||+...+..
T Consensus       121 ~~~~~~~~~~l~~~~~~~~a~qia~-Gl~yLH~~~iiHRDLKp~NILl~~~~~vKI~DFGlar~~~~  186 (334)
T cd05100         121 FDTCKLPEEQLTFKDLVSCAYQVAR-GMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHN  186 (334)
T ss_pred             CCCCCCCHHCCCHHHHHHHHHHHHH-HHHHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCEECCC
T ss_conf             2112483201789999999999999-99999848997786861227798999899986788707888


No 281
>KOG2270 consensus
Probab=98.38  E-value=1.8e-05  Score=61.64  Aligned_cols=220  Identities=19%  Similarity=0.182  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211---468543346917999999988788
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQE---KLLPSMRRLCFSAVVRALEQVTKM  201 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~---~~~~~~~~~~~~~~~~e~~~~l~~  201 (517)
                      --|..|-=|-||.|+-.|   |+++||||-.--|---=.+|        ++++   ++--..-.-++..+|.-++     
T Consensus       150 GCiSTGKEANVYHat~~d---G~~~AIKIYKTSILvFKDRd--------RYV~GEfRFRhgyck~NPRKMVk~WA-----  213 (520)
T KOG2270         150 GCISTGKEANVYHATEED---GSEFAIKIYKTSILVFKDRD--------RYVSGEFRFRHGYCKHNPRKMVKTWA-----  213 (520)
T ss_pred             CCCCCCCCCEEEEEECCC---CCEEEEEEEEEEEEEEECHH--------HHCCCEEEEECCCCCCCCHHHHHHHH-----
T ss_conf             423047533057630679---86678998764478871311--------20255023323543578188999999-----


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHH---HHHHHHHHHHHH
Q ss_conf             86559999889872024467766430000102217833530024786324267733200225689---999999999989
Q gi|254780623|r  202 EMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERL---SVTLVQSFLLHT  278 (517)
Q Consensus       202 ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~l---a~~l~~~~~~qi  278 (517)
                          ..|.+|+.|++.     .+|-+|+|+  +--.+||||+|+-+.--. .+.|+...+.+.++   -..++ .+++-+
T Consensus       214 ----EKE~RNLkRl~~-----aGIP~PePI--lLk~hVLVM~FlGrdgw~-aPkLKd~~ls~~ka~~~Y~~~v-~~MR~l  280 (520)
T KOG2270         214 ----EKEMRNLKRLNN-----AGIPCPEPI--LLKNHVLVMEFLGRDGWA-APKLKDASLSTSKARELYQQCV-RIMRRL  280 (520)
T ss_pred             ----HHHHHHHHHHHH-----CCCCCCCCE--EEECCEEEEEECCCCCCC-CCCCCCCCCCHHHHHHHHHHHH-HHHHHH
T ss_conf             ----999988999983-----699999843--451536766301578876-7330256678577899999999-999999


Q ss_pred             H-HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf             7-448661787862289802895357434031216989999999766999718727899999984126677893689999
Q gi|254780623|r  279 L-RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQA  357 (517)
Q Consensus       279 ~-~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~  357 (517)
                      + ..+..|||+--=|+++ -+|++++||-+.--+.+-.....       +..-|...+-+.+..+|+..-.         
T Consensus       281 Y~~c~LVHADLSEfN~Ly-hdG~lyiIDVSQSVE~DHP~ald-------FLRmDc~NVn~FF~r~gv~v~t---------  343 (520)
T KOG2270         281 YQKCRLVHADLSEFNLLY-HDGKLYIIDVSQSVEHDHPHALD-------FLRMDCNNVNDFFRRLGVAVMT---------  343 (520)
T ss_pred             HHHHCEECCCHHHHHHEE-ECCEEEEEECCCCCCCCCHHHHH-------HHHHHHHHHHHHHHHCCCEEEC---------
T ss_conf             987550015565531137-77879999764334678805889-------9998777789999970880200---------


Q ss_pred             HHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCC
Q ss_conf             998521001334333113568999997545279
Q gi|254780623|r  358 IRAIGEPIHGQSSDVISMGKLLTMLFEITELFD  390 (517)
Q Consensus       358 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  390 (517)
                      ++.+++-+.+..+...++...+..+..+.....
T Consensus       344 ~r~LFefI~d~~i~~~nmd~~l~~l~~~~~~r~  376 (520)
T KOG2270         344 VRELFEFITDPTITLENMDAYLEELKAIIISRD  376 (520)
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             888999860565221107889999999986276


No 282
>cd07862 STKc_CDK6 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cyt
Probab=98.38  E-value=2.3e-06  Score=68.52  Aligned_cols=145  Identities=23%  Similarity=0.266  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-|+.||-|.||+|+-. .++++.||||+.+-...+.                                ......     
T Consensus         7 ~~iG~G~fg~V~~~~~~-~~~~~~vAiK~i~~~~~~~--------------------------------~~~~~~-----   48 (290)
T cd07862           7 AEIGEGAYGKVFKARDL-KNGGRFVALKRVRVQTGEE--------------------------------GMPLST-----   48 (290)
T ss_pred             EEEECCCCCEEEEEEEE-CCCCEEEEEEEECCCCCCH--------------------------------HHHHHH-----
T ss_conf             58641438099999998-9899899999984000330--------------------------------448999-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCC-------HHCCCCEEEEECCCCCCCCH-HHHHHHHCCCHH---HHHHHHHHH
Q ss_conf             5999988987202446776643000010-------22178335300247863242-677332002256---899999999
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDW-------NRTERDVITMEWIDGVKISD-TEKLRACGHDLE---RLSVTLVQS  273 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~-------~~st~~VLvmE~i~G~~i~d-~~~l~~~~~d~~---~la~~l~~~  273 (517)
                       .+|..-+..+.. + +.|.|.  +.|.       +..+.-.+||||++|- +.+ +......+...+   .++..++.+
T Consensus        49 -~~Ei~il~~l~~-~-~HpnIv--~l~d~~~~~~~~~~~~~~iv~E~~~~~-L~~~l~~~~~~~~~~~~i~~i~~Qil~a  122 (290)
T cd07862          49 -IREVAVLRHLET-F-EHPNVV--RLFDVCTVSRTDRETKLTLVFEHVDQD-LTTYLDKVPEPGVPTETIKDMMFQLLRG  122 (290)
T ss_pred             -HHHHHHHHHHHH-C-CCCCEE--EEEEEEEECCCCCCCEEEEEEECCCCC-HHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             -999999997615-6-899988--898788522457887699999779998-8999986667898999999999999999


Q ss_pred             HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             99989744866178786228980289535743403121698
Q gi|254780623|r  274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                       +.-+-..|+.|-|.-|.||+++.+|.+-+.|||+....+.
T Consensus       123 -l~ylH~~~IiHRDlKPeNILl~~~~~vKl~DFGla~~~~~  162 (290)
T cd07862         123 -LDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSF  162 (290)
T ss_pred             -HHHHHHCCCEECCCCHHHEEECCCCCEEECCCCCCEECCC
T ss_conf             -9999988934354645235898999979732343055367


No 283
>cd05103 PTKc_VEGFR2 Catalytic Domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp
Probab=98.37  E-value=8e-07  Score=72.03  Aligned_cols=34  Identities=18%  Similarity=0.389  Sum_probs=30.2

Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC
Q ss_conf             7448661787862289802895357434031216
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL  312 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l  312 (517)
                      -..|+.|-|.-|.|++++.++.+-+-|||+...+
T Consensus       196 h~~~ivHRDLK~~NiLl~~~~~vKi~DFGlar~~  229 (343)
T cd05103         196 ASRKCIHRDLAARNILLSENNVVKICDFGLARDI  229 (343)
T ss_pred             HHCCCCCCCCCCCEEEECCCCCEEECCCCCCCCC
T ss_conf             8788666747850075778997898137234014


No 284
>pfam03881 Fructosamin_kin Fructosamine kinase. This family includes eukaryotic fructosamine-3-kinase enzymes. The family also includes bacterial members that have not been characterized but probably have a similar or identical function.
Probab=98.37  E-value=1.7e-06  Score=69.58  Aligned_cols=232  Identities=14%  Similarity=0.095  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             899999875404788999999867-6667788886555502128887236876403104688777788999875321146
Q gi|254780623|r  101 TNTARLSVASALKAPIEELYCEFD-DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKL  179 (517)
Q Consensus       101 ~~~v~~~ie~elg~~~~~~F~~fd-ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~  179 (517)
                      |..+.+.|.+.+|.+..-    -+ +|++.++|.|+++-..    +++.+.||+.+..-...++...+-|+.++..-.-.
T Consensus         1 ~~~i~~~l~~~~g~~~~i----~~~~~v~GGdIn~a~~l~~----~~~~~FvK~~~~~~~~~F~~Ea~gL~~L~~~~~~~   72 (287)
T pfam03881         1 WQAIAQQLSEQLGTPFTI----TEREKVGGGDINQAYRISD----GEQRYFVKLNEREALAMFEAEAEGLELLARTQTIR   72 (287)
T ss_pred             CHHHHHHHHHHHCCCCCC----CEEEECCCCCHHHEEEEEE----CCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             957999999987899631----0334428841733688980----89768999679542789999999999898669988


Q ss_pred             CCCCCCCCHHH----HHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCC-----
Q ss_conf             85433469179----999999887-88865599998898720244677664300001022178335300247863-----
Q gi|254780623|r  180 LPSMRRLCFSA----VVRALEQVT-KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVK-----  249 (517)
Q Consensus       180 ~~~~~~~~~~~----~~~e~~~~l-~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~-----  249 (517)
                      +|.--...-.+    ++-|+-..- ...-+...=++.+.++.+. ...+.+=.|.  +.+++...-...|.+...     
T Consensus        73 vP~vi~~g~~~~~~~Lvle~i~~~~~~~~~~~~LG~~LA~LH~~-~~~~~FGf~~--d~~iG~~~Q~N~w~~~W~~Ff~~  149 (287)
T pfam03881        73 VPRVIAWGSTRDHSFLVLEYLPLGPDNTGSAYQLGQQLAKLHQW-GEQKQFGFDF--DNTIGSTPQPNRWQSSWADFFAE  149 (287)
T ss_pred             CCCEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHC-CCCCCCCCCC--CCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             99568863459964899861035899807899999999998714-8988988988--89877604689876889999999


Q ss_pred             --CC-HHHHHHHHCCCH---HHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHH
Q ss_conf             --24-267733200225---689999999999989744866178786228980289535743403121698999999976
Q gi|254780623|r  250 --IS-DTEKLRACGHDL---ERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEI  323 (517)
Q Consensus       250 --i~-d~~~l~~~~~d~---~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l  323 (517)
                        +. .+....+.+...   .++.+++...+-...-.--..|||..+||++++.+|+.+++|=.+-. =+++.=-++..+
T Consensus       150 ~RL~~ql~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~PsLlHGDLW~GN~~~~~~G~p~liDPA~yy-G~rE~DLAm~~l  228 (287)
T pfam03881       150 QRIGWQLQLAKEKGLSFGDIDRLVERVADLLSGHQPQPSLLHGDLWSGNAAFTADGEPVIFDPACYY-GDRECDLAMTEL  228 (287)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEECCCCCEEEECCHHCC-CCCHHHHHHHHH
T ss_conf             8299999999974997677999999999984258998300225535652558479987897543115-770776787773


Q ss_pred             HHHHHCCCHHHHHHHHHHHHCCCCC
Q ss_conf             6999718727899999984126677
Q gi|254780623|r  324 LYGFISRDYQRVADVHFEAGYVPRH  348 (517)
Q Consensus       324 ~~a~~~~D~~~~~~~l~~lg~~~~~  348 (517)
                      |-+    -.+...++..+.--..++
T Consensus       229 Fgg----f~~~Fy~~Y~~~~Pl~~g  249 (287)
T pfam03881       229 FGG----FPPDFYDGYQSVYPLDEG  249 (287)
T ss_pred             CCC----CCHHHHHHHHHHCCCCCC
T ss_conf             278----759999999972799828


No 285
>cd07856 STKc_Sty1_Hog1 The catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1 subfamily. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic
Probab=98.37  E-value=1.4e-06  Score=70.22  Aligned_cols=140  Identities=18%  Similarity=0.234  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      ++|++||-|+||+|+-+  .+|+.||||+.+....                    .+            .....+     
T Consensus        16 ~~IG~G~fg~Vy~a~d~--~tg~~vAiK~i~~~~~--------------------~~------------~~~~~~-----   56 (328)
T cd07856          16 QPVGMGAFGLVCSARDQ--LTGQNVAIKKIMKPFS--------------------TP------------VLAKRT-----   56 (328)
T ss_pred             EEEECCCCEEEEEEEEC--CCCCEEEEEEECCHHC--------------------CH------------HHHHHH-----
T ss_conf             79723718499999988--9998999999871115--------------------96------------899999-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHC
Q ss_conf             599998898720244677664300001022178335300247863242677332002256---89999999999989744
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLE---RLSVTLVQSFLLHTLRD  281 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~l~~~~~~qi~~~  281 (517)
                       .+|.+.+.+++.    ..-|.+=.+|.+-...-.+|||++ |..+.+.  ++....+..   .++..++.+ +.-+-..
T Consensus        57 -~rEi~iL~~l~H----pnIV~l~~~f~~~~~~~~iv~e~~-g~~L~~~--l~~~~l~~~~~~~~~~Qil~a-L~yLH~~  127 (328)
T cd07856          57 -YRELKLLKHLRH----ENIISLSDIFISPLEDIYFVTELL-GTDLHRL--LTSRPLEKQFIQYFLYQILRG-LKYVHSA  127 (328)
T ss_pred             -HHHHHHHHHCCC----CCEEEEEEEEECCCCEEEEEEECC-CCCHHHH--HHCCCCCHHHHHHHHHHHHHH-HHHHHHC
T ss_conf             -999999986689----898316779981897099999366-6879999--972999999999999999999-9999878


Q ss_pred             CEECCCCCCCEEEEECCCCEEEEECCHHEEC
Q ss_conf             8661787862289802895357434031216
Q gi|254780623|r  282 GFFHADLHPGNLFVDSKGYIVAVDMGITGRL  312 (517)
Q Consensus       282 GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l  312 (517)
                      |+.|-|.-|.||+++.++.+-+.|||.....
T Consensus       128 ~IiHRDIKPeNILl~~~~~vKL~DFGla~~~  158 (328)
T cd07856         128 GVVHRDLKPSNILINENCDLKICDFGLARIQ  158 (328)
T ss_pred             CCEECCCCHHHEEECCCCCEEEEECCCCCCC
T ss_conf             8556667558868889998699967777547


No 286
>KOG0594 consensus
Probab=98.37  E-value=1.3e-06  Score=70.46  Aligned_cols=146  Identities=23%  Similarity=0.297  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf             99999867666778888655550212888723687640310468877778899987532114685433469179999999
Q gi|254780623|r  117 EELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALE  196 (517)
Q Consensus       117 ~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~  196 (517)
                      -+.|..+| -++.++.|-||+|+-+.  +|+.||+|..|=.-++                +. .|.              
T Consensus        10 ~~~~~~~e-klGeGtyg~Vykar~~~--~g~~VALKkirl~~~~----------------EG-~P~--------------   55 (323)
T KOG0594          10 MFDYEKVE-KLGEGTYGVVYKARSKR--TGKFVALKKIRLEFEE----------------EG-VPS--------------   55 (323)
T ss_pred             HHHHHHHH-HHCCCCCEEEEEEEEEC--CCCEEEEEEEECCCCC----------------CC-CCC--------------
T ss_conf             78889999-96799735899999806--8987999998624556----------------68-984--------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCH----HCCCC-EEEEECCCCCCCCHHHHHHH--HCCCHHHHHHH
Q ss_conf             8878886559999889872024467766430000102----21783-35300247863242677332--00225689999
Q gi|254780623|r  197 QVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWN----RTERD-VITMEWIDGVKISDTEKLRA--CGHDLERLSVT  269 (517)
Q Consensus       197 ~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~----~st~~-VLvmE~i~G~~i~d~~~l~~--~~~d~~~la~~  269 (517)
                       +..+|..+..+.++...         -|..=.+...    -|..+ .||+||++-.--.-.+....  .|.+.     .
T Consensus        56 -taiREisllk~L~~~~~---------iv~L~dv~~~~~~~~~~~~l~lvfe~~d~DL~~ymd~~~~~~~g~~~-----~  120 (323)
T KOG0594          56 -TAIREISLLKRLSHANH---------IVRLHDVIHTSNNHRGIGKLYLVFEFLDRDLKKYMDSLPKKPQGLPP-----R  120 (323)
T ss_pred             -HHHHHHHHHHHHCCCCC---------EEEEEEEEEECCCCCCCCEEEEEEEEECCCHHHHHHHCCCCCCCCCH-----H
T ss_conf             -14679999997477767---------57777567504545666359999986435089999844665568988-----9


Q ss_pred             HHHHHHHHHH-------HCCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             9999999897-------44866178786228980289535743403121
Q gi|254780623|r  270 LVQSFLLHTL-------RDGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       270 l~~~~~~qi~-------~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                      .+..|+.|++       .+|..|-|.+|.||+|+++|.+-+.|||....
T Consensus       121 ~ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlLi~~~G~lKlaDFGlAra  169 (323)
T KOG0594         121 LIKSFMRQLLRGLAFLHSHGILHRDLKPQNLLISSSGVLKLADFGLARA  169 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEECCCCCEEEEECCHHHH
T ss_conf             9999999999999999867822466870017887988686610442777


No 287
>pfam06176 WaaY Lipopolysaccharide core biosynthesis protein (WaaY). This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY). The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system.
Probab=98.36  E-value=7.8e-07  Score=72.13  Aligned_cols=130  Identities=17%  Similarity=0.273  Sum_probs=82.3

Q ss_pred             CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             87236876403104688777788999875321146854334691799999998878886559999889872024467766
Q gi|254780623|r  145 GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQG  224 (517)
Q Consensus       145 ~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~  224 (517)
                      .|.+-++|+-||...       +.=+++..++    .           .++...+..++|-.+...-.      .-+++.
T Consensus        53 ~~~kyIlK~~~~~~~-------~~eR~~~s~i----k-----------g~~y~~li~~~~~~~~eG~~------~~nd~y  104 (229)
T pfam06176        53 DYGKYVLKVFAPKVK-------RNERFLKSLV----K-----------GDYYENLIVQTDRVRSEGLT------SLNDFY  104 (229)
T ss_pred             CCCEEEEECCCCCCC-------HHHHHHHHHH----C-----------CHHHHHHHHHHHHHHHCCCC------CCCCEE
T ss_conf             595589966752111-------2899999986----1-----------48999999999988761330------003200


Q ss_pred             CCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEE
Q ss_conf             43000010221783353002478632426773320022568999999999998974486617878622898028953574
Q gi|254780623|r  225 FRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAV  304 (517)
Q Consensus       225 v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~l  304 (517)
                      +.+-+-.--+|..-+++||||+|++++|.....+.      +... +.....|+-.+|+.|+||||||+.+ ++|.+-+|
T Consensus       105 l~aekk~~r~~~~~i~l~EYIEG~~l~~~~dI~e~------~~~~-Ik~~I~~LH~~g~~sgD~h~gNFI~-s~~~irII  176 (229)
T pfam06176       105 LLAERKTLNYAHTYIMLIEYIEGVELNDMPEISED------VKAK-IKQSIESLHQHGMVSGDPHRGNFIV-SKDGVRII  176 (229)
T ss_pred             EEEEHHHCCEEEEEEEEEEEECCCCCCCCCCCCHH------HHHH-HHHHHHHHHHCCCCCCCCCCCCEEE-ECCCEEEE
T ss_conf             13121425601456666532257324664445666------7999-9999999997166358998765475-08977999


Q ss_pred             ECCHHE
Q ss_conf             340312
Q gi|254780623|r  305 DMGITG  310 (517)
Q Consensus       305 DfG~vg  310 (517)
                      |.---+
T Consensus       177 DlsgK~  182 (229)
T pfam06176       177 DLSGKR  182 (229)
T ss_pred             ECCCCC
T ss_conf             888851


No 288
>cd07858 STKc_TEY_MAPK_plant The catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the acti
Probab=98.36  E-value=1e-06  Score=71.18  Aligned_cols=145  Identities=19%  Similarity=0.254  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.||-|+||+|+-..  +|+.||||+.+........                                ...      
T Consensus        11 k~IG~G~fG~Vy~a~~~~--tg~~vAiK~i~~~~~~~~~--------------------------------~~~------   50 (337)
T cd07858          11 KPIGRGAYGIVCSAKNSE--TNEKVAIKKIANAFDNRID--------------------------------AKR------   50 (337)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECCHHCCHHH--------------------------------HHH------
T ss_conf             797227385999999889--9989999998802228788--------------------------------999------


Q ss_pred             HHHHHHHHHHHHC-CCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHH-CCC---HHHHHHHHHHHHHHHHH
Q ss_conf             5999988987202-446776643000010221783353002478632426773320-022---56899999999999897
Q gi|254780623|r  205 LRLEAAAFSEMAE-NTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRAC-GHD---LERLSVTLVQSFLLHTL  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~-~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~-~~d---~~~la~~l~~~~~~qi~  279 (517)
                      ..+|.+.+..++. |.-...++..|.-. +....-.++||+++| .+.+.  ++.. ...   .+.++..++.+ +.-+-
T Consensus        51 ~~~Ei~il~~l~HpnIv~l~~~~~~~~~-~~~~~~yiv~e~~~~-~L~~~--i~~~~~l~e~~~~~i~~Qil~a-L~yLH  125 (337)
T cd07858          51 TLREIKLLRHLDHENVIAIKDIMPPPHR-EAFNDVYIVYELMDT-DLHQI--IRSSQTLSDDHCQYFLYQLLRG-LKYIH  125 (337)
T ss_pred             HHHHHHHHHHCCCCCEEEEEEEEECCCC-CCCCEEEEEEECCCC-CHHHH--HHCCCCCCHHHHHHHHHHHHHH-HHHHH
T ss_conf             9999999986579996059888703664-555448999962697-47999--8707999999999999999999-99997


Q ss_pred             HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             44866178786228980289535743403121698
Q gi|254780623|r  280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      ..|+.|-|.-|.||+++.++.+-+.|||.....+.
T Consensus       126 ~~~IiHRDlKPeNILl~~~~~iKL~DFGlAk~~~~  160 (337)
T cd07858         126 SANVLHRDLKPSNLLLNANCDLKICDFGLARTTSE  160 (337)
T ss_pred             HCCCEECCCCHHHEEECCCCCEEEEECCCCCCCCC
T ss_conf             78950035856986987999889631266633677


No 289
>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (Repeat 1) Domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity 
Probab=98.36  E-value=1.4e-06  Score=70.06  Aligned_cols=139  Identities=12%  Similarity=0.164  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHHEECCC-C----CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             66677888865555021288-8----723687640310468877778899987532114685433469179999999887
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDIN-G----YRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT  199 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~-~----g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  199 (517)
                      |-|++||.|+||+|+.++.. .    ..+||||+....-.                              +..+      
T Consensus         1 e~iG~G~fg~Vykg~~~~~~~~~~~~~~~vaiK~~~~~~~------------------------------~~~~------   44 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHR------------------------------NYSE------   44 (258)
T ss_pred             CCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEECCCCC------------------------------HHHH------
T ss_conf             9155689989999998988874413003889998555661------------------------------5899------


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHHHC--CCH---HHHHHHHHH
Q ss_conf             88865599998898720244677664300001022--17833530024786324267733200--225---689999999
Q gi|254780623|r  200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRACG--HDL---ERLSVTLVQ  272 (517)
Q Consensus       200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~~~--~d~---~~la~~l~~  272 (517)
                          .|.+|+.-+.+++.     |.|.  +.|.-.  .....|||||++|-.+.+.  ++..+  .+.   -+++..++.
T Consensus        45 ----~f~~E~~il~~l~H-----pnIV--~~~g~~~~~~~~~lV~Ey~~~GsL~~~--L~~~~~~~~~~~~l~i~~qia~  111 (258)
T cd05078          45 ----SFFEAASMMSQLSH-----KHLV--LNYGVCVCGDESIMVQEYVKFGSLDTY--LKKNKNLINISWKLEVAKQLAW  111 (258)
T ss_pred             ----HHHHHHHHHHHCCC-----CCEE--EEEEEEEECCEEEEEEEECCCCCHHHH--HHHCCCCCCHHHHHHHHHHHHH
T ss_conf             ----99999999986899-----7874--599999989988999992899958998--7501678999999999999999


Q ss_pred             HHHHHHHHCCEECCCCCCCEEEEECCCC--------EEEEECCHHEECC
Q ss_conf             9999897448661787862289802895--------3574340312169
Q gi|254780623|r  273 SFLLHTLRDGFFHADLHPGNLFVDSKGY--------IVAVDMGITGRLS  313 (517)
Q Consensus       273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~--------i~~lDfG~vg~l~  313 (517)
                      + +.-+-..|+.|.|.-|.||+++.++.        +-+-|||+...+.
T Consensus       112 g-l~yLH~~~iiHrDlK~~NiLl~~~~~~k~~~~~~~kl~DfG~s~~~~  159 (258)
T cd05078         112 A-LHFLEDKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVL  159 (258)
T ss_pred             H-HHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEECCCCCCEEEE
T ss_conf             9-99974489877856766388846677443675541322788760660


No 290
>cd05071 PTKc_Src Catalytic Domain of the Protein Tyrosine Kinase, Src. Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo
Probab=98.35  E-value=8.3e-07  Score=71.92  Aligned_cols=142  Identities=15%  Similarity=0.192  Sum_probs=90.7

Q ss_pred             HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99867--6667788886555502128887236876403104688777788999875321146854334691799999998
Q gi|254780623|r  120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ  197 (517)
Q Consensus       120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~  197 (517)
                      +++|+  +-||.|+-|.||+|++++   +.+||||+.+++-.+                           .    +    
T Consensus         5 ~e~~~~~~~iG~G~fg~Vy~g~~~~---~~~VAiK~~~~~~~~---------------------------~----~----   46 (262)
T cd05071           5 RESLRLEVKLGQGCFGEVWMGTWNG---TTRVAIKTLKPGTMS---------------------------P----E----   46 (262)
T ss_pred             HHHEEEEEEEEECCCCEEEEEEECC---CCEEEEEEECCCCCC---------------------------H----H----
T ss_conf             7997976899407683999999999---999999998736799---------------------------8----9----


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHHHC-CC---HHHHHHHHH
Q ss_conf             878886559999889872024467766430000102217--833530024786324267733200-22---568999999
Q gi|254780623|r  198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRACG-HD---LERLSVTLV  271 (517)
Q Consensus       198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~~~-~d---~~~la~~l~  271 (517)
                            .|.+|++-+.+++.     +.|  -+.|. .|+  +-.+||||++|-.+.+.-.-+... ..   .-.++..++
T Consensus        47 ------~~~~Ei~~l~~l~H-----~nI--v~~~g-~~~~~~~~iv~Ey~~~G~L~~~l~~~~~~~~~~~~~~~i~~~ia  112 (262)
T cd05071          47 ------AFLQEAQVMKKLRH-----EKL--VQLYA-VVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIA  112 (262)
T ss_pred             ------HHHHHHHHHHHCCC-----CCE--EEEEE-EEECCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             ------99999999986899-----897--66999-99269649999817999899998545587899999999999999


Q ss_pred             HHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             9999989744866178786228980289535743403121698
Q gi|254780623|r  272 QSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       272 ~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      .+ +.-+-..|+.|.|.-|.||++++++.+-+.|||+...+.+
T Consensus       113 ~g-l~yLH~~~iiHrDLK~~NILl~~~~~~Kl~DFGls~~~~~  154 (262)
T cd05071         113 SG-MAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIED  154 (262)
T ss_pred             HH-HHHHHHCCEEECEECCCCEEECCCCEEEECCCCCCEECCC
T ss_conf             99-9998648887246051517887998299812787648778


No 291
>cd05102 PTKc_VEGFR3 Catalytic Domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V
Probab=98.32  E-value=3.7e-06  Score=66.86  Aligned_cols=35  Identities=17%  Similarity=0.360  Sum_probs=30.4

Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             74486617878622898028953574340312169
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                      -..++.|.|.-|.|++++.++.+-+-|||+...+.
T Consensus       191 h~~~iiHRDLK~~NiLl~~~~~vKi~DFGlsr~~~  225 (338)
T cd05102         191 ASRKCIHRDLAARNILLSENNVVKICDFGLARDIY  225 (338)
T ss_pred             HHCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCC
T ss_conf             85892346688686998899988983354651456


No 292
>cd07857 STKc_MPK1 The catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1 subfamily. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape
Probab=98.32  E-value=1e-06  Score=71.17  Aligned_cols=141  Identities=19%  Similarity=0.272  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.|+-|.||+|+-...+.|..||||.......+.+                                ......    
T Consensus         6 ~~iG~G~fG~V~~a~~~~t~~~~~vAiK~i~~~~~~~~--------------------------------~~~~~~----   49 (332)
T cd07857           6 KELGQGAYGIVCSARNAETNEEETVAIKKVTNVFSKKI--------------------------------LAKRAL----   49 (332)
T ss_pred             EEEECCCCEEEEEEEECCCCCCEEEEEEEECCHHHCHH--------------------------------HHHHHH----
T ss_conf             59432558299999983179865999999780331558--------------------------------899999----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCH---H-CCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH-
Q ss_conf             599998898720244677664300---0-01022178335300247863242677332002256899999999999897-
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVP---K-IDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL-  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP---~-vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~-  279 (517)
                        +|.+.+.+++    +.+.|.--   . ++.+-...-.++||+++| .+.+.  ++..+    .+.+.-+..|+.|++ 
T Consensus        50 --rEi~il~~l~----~HpnIv~l~~~~~~~~~~~~~~~l~~e~~~~-~L~~~--l~~~~----~l~e~~~~~~~~qil~  116 (332)
T cd07857          50 --REIKLLRHFR----GHKNITCLYDMDIVFPGNFNEVYLYEELMEA-DLHQI--IRSGQ----PLTDAHFQSFIYQILC  116 (332)
T ss_pred             --HHHHHHHHHC----CCCCEEEEEECCCCCCCCCCEEEEEEECCCC-CHHHH--HHHCC----CCCHHHHHHHHHHHHH
T ss_conf             --9999999740----6999879972230015888779999967899-88999--98279----9999999999999999


Q ss_pred             ------HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             ------44866178786228980289535743403121698
Q gi|254780623|r  280 ------RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       280 ------~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                            ..|+.|-|.-|.||+++.+|.+-+.|||....+++
T Consensus       117 aL~ylH~~~IiHRDlKPeNILl~~~~~vKl~DFGla~~~~~  157 (332)
T cd07857         117 GLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLARGFSE  157 (332)
T ss_pred             HHHHHHHCCCEECCCCHHHEEECCCCCEEEEECCCCCCCCC
T ss_conf             99999879842125778996887899877604251111577


No 293
>cd05106 PTKc_CSF-1R Catalytic Domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-stimulating factor-1 receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=98.32  E-value=4.4e-06  Score=66.30  Aligned_cols=36  Identities=14%  Similarity=0.286  Sum_probs=30.7

Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             744866178786228980289535743403121698
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      -..++.|-|..+-|++|+.++.+-+-|||+...+..
T Consensus       229 ~s~~iIHRDLaarNiLv~~~~~vKIaDFGLsr~~~~  264 (374)
T cd05106         229 ASKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMN  264 (374)
T ss_pred             HHCCEECCCCCHHEEEECCCCCEEEEECCCCCCCCC
T ss_conf             878923276774018986898299953610100346


No 294
>KOG0583 consensus
Probab=98.31  E-value=7.9e-07  Score=72.11  Aligned_cols=143  Identities=21%  Similarity=0.300  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             76667788886555502128887236876403104688777788999875321146854334691799999998878886
Q gi|254780623|r  124 DDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM  203 (517)
Q Consensus       124 dePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El  203 (517)
                      ...++++|.|-|+.|.-..  +|+.||||+....                     ..+... ...       ...+.   
T Consensus        22 ~~~lG~GsfgkV~~a~~~~--t~~~vAiKii~~~---------------------~~~~~~-~~~-------~~~i~---   67 (370)
T KOG0583          22 GRTLGSGSFGKVKLAKHRL--TGEKVAIKIIDRK---------------------KVSSKS-QKL-------DELIK---   67 (370)
T ss_pred             CCCCCCCCCEEEEEEEECC--CCCEEEEEEECCC---------------------CCCCCH-HHH-------HHHHH---
T ss_conf             3656888861057642035--7976767864300---------------------155410-234-------43335---


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH----
Q ss_conf             5599998898720244677664300001022178335300247863242677332002256899999999999897----
Q gi|254780623|r  204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL----  279 (517)
Q Consensus       204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~----  279 (517)
                         +|..++++++.+=   .-+.+-+|+. ..+.-.+||||+.|--+-+  .+..    ...+.+..++.||+|+.    
T Consensus        68 ---rEi~~~~~~~~Hp---nI~~l~ev~~-t~~~~~ivmEy~~gGdL~~--~i~~----~g~l~E~~ar~~F~Qlisav~  134 (370)
T KOG0583          68 ---REISILRRLRSHP---NIIRLLEVFA-TPTKIYIVMEYCSGGDLFD--YIVN----KGRLKEDEARKYFRQLISAVA  134 (370)
T ss_pred             ---HHHHHHHHCCCCC---CEEEEEEEEE-CCCEEEEEEECCCCCCHHH--HHHH----CCCCCHHHHHHHHHHHHHHHH
T ss_conf             ---7999874145799---8833367885-5871899982278814899--9986----489887999999999999999


Q ss_pred             ---HCCEECCCCCCCEEEEECC-CCEEEEECCHHEECC
Q ss_conf             ---4486617878622898028-953574340312169
Q gi|254780623|r  280 ---RDGFFHADLHPGNLFVDSK-GYIVAVDMGITGRLS  313 (517)
Q Consensus       280 ---~~GfFHaDPHpGNi~v~~d-g~i~~lDfG~vg~l~  313 (517)
                         ..|.+|-|.-|.||+++.+ +.+-+.|||.....+
T Consensus       135 y~H~~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~~~  172 (370)
T KOG0583         135 YCHSRGIVHRDLKPENILLDGNEGNLKLSDFGLSAISP  172 (370)
T ss_pred             HHHHCCCCCCCCCHHHEEECCCCCCEEEEECCCCCCCC
T ss_conf             88755975565778773323888857985378851357


No 295
>KOG0192 consensus
Probab=98.29  E-value=1.2e-05  Score=62.84  Aligned_cols=221  Identities=16%  Similarity=0.123  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCE-EEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             666778888655550212888723-6876403104688777788999875321146854334691799999998878886
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRK-VAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM  203 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~-VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El  203 (517)
                      +-++++|-|+||+|..+    |+. ||||+..+.-..                    +       ..           +-
T Consensus        47 ~~iG~G~~g~V~~~~~~----g~~~vavK~~~~~~~~--------------------~-------~~-----------~~   84 (362)
T KOG0192          47 EVLGSGSFGTVYKGKWR----GTDVVAVKIISDPDFD--------------------D-------ES-----------RK   84 (362)
T ss_pred             HCCCCCCCEEEEEEECC----CCCEEEEEEECCCCCC--------------------H-------HH-----------HH
T ss_conf             01267786159997537----8600799991650028--------------------4-------77-----------99


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC----CEEEEECCCCCCCCHHHHH-HHHCCCHHHHHHHHHHHHHHH-
Q ss_conf             5599998898720244677664300001022178----3353002478632426773-320022568999999999998-
Q gi|254780623|r  204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER----DVITMEWIDGVKISDTEKL-RACGHDLERLSVTLVQSFLLH-  277 (517)
Q Consensus       204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~----~VLvmE~i~G~~i~d~~~l-~~~~~d~~~la~~l~~~~~~q-  277 (517)
                      +|.+|+.-+.+.+.    -.-|.+.    ..|++    -.|||||++|-.+.++-.- .....+.+.......+.---| 
T Consensus        85 ~f~~E~~il~~l~H----pNIV~f~----G~~~~~~~~~~iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~  156 (362)
T KOG0192          85 AFRREASLLSRLRH----PNIVQFY----GACTSPPGSLCIVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGME  156 (362)
T ss_pred             HHHHHHHHHHHCCC----CCCCEEE----EEEECCCCCEEEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999999976789----9845177----889238986489998689992999976502567899999999999998887


Q ss_pred             -HHHCC-EECCCCCCCEEEEECCC-CEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHH--HHCCCCCCCHH
Q ss_conf             -97448-66178786228980289-535743403121698999999976699971872789999998--41266778936
Q gi|254780623|r  278 -TLRDG-FFHADLHPGNLFVDSKG-YIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFE--AGYVPRHHNRF  352 (517)
Q Consensus       278 -i~~~G-fFHaDPHpGNi~v~~dg-~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~--lg~~~~~~d~~  352 (517)
                       +-..+ .+|.|.-|-|++++.++ .+-+-|||+........      .-..-..+.+..++=.+++  -...+..+|.-
T Consensus       157 YLH~~~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~------~~~~~~~GT~~wMAPEv~~~~~~~~~~K~Dvy  230 (362)
T KOG0192         157 YLHSEGPIIHRDLKSDNILVDLKGKTLKIADFGLSREKVISK------TSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVY  230 (362)
T ss_pred             HHCCCCCEEEEECCCCCEEECCCCCEEEECCCCCCHHHHCCC------CCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHH
T ss_conf             650589778743585427774888878879888775540245------55546789612238656426676665035222


Q ss_pred             HHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCC--CCCCHHHHHHHHH
Q ss_conf             89999998521001334333113568999997545279--7128889999999
Q gi|254780623|r  353 SFAQAIRAIGEPIHGQSSDVISMGKLLTMLFEITELFD--MMTRPELVMLQKT  403 (517)
Q Consensus       353 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~P~~~~ll~r~  403 (517)
                      .|.--+-+++..  ..|..+.+..++...+..-..+-.  -..|+.+.-++..
T Consensus       231 SFgIvlWEl~t~--~~Pf~~~~~~~~~~~v~~~~~Rp~~p~~~~~~l~~l~~~  281 (362)
T KOG0192         231 SFGIVLWELLTG--EIPFEDLAPVQVASAVVVGGLRPPIPKECPPHLSSLMER  281 (362)
T ss_pred             HHHHHHHHHHHC--CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf             138899987507--878887766788999984688899865488899999998


No 296
>cd05104 PTKc_Kit Catalytic Domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=98.29  E-value=7.4e-06  Score=64.54  Aligned_cols=36  Identities=17%  Similarity=0.326  Sum_probs=30.8

Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             744866178786228980289535743403121698
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      -..++.|.|.-+-|+++..+..+-+-|||+...+..
T Consensus       231 ~~~~~iHrDLaaRNvlv~~~~~~Ki~DFGlsr~~~~  266 (375)
T cd05104         231 ASKNCIHRDLAARNILLTHGRITKICDFGLARDIRN  266 (375)
T ss_pred             HHCCCCCCCCCCCCEEECCCCCEEECCCCCCEECCC
T ss_conf             868904361574625666999189797622125257


No 297
>cd06617 PKc_MKK3_6 Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threon
Probab=98.28  E-value=2.5e-07  Score=75.97  Aligned_cols=142  Identities=19%  Similarity=0.243  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +.|+.|+-|.||+|+-+.  +|+.||||+.+..+...                                + ...+..|++
T Consensus         7 ~~iG~G~fg~V~~~~~~~--t~~~vAiK~i~~~~~~~--------------------------------~-~~~~~~e~~   51 (280)
T cd06617           7 EELGRGAYGVVDKMRHVP--TGTIMAVKRIRATVNSQ--------------------------------E-QKRLLMDLD   51 (280)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCCCH--------------------------------H-HHHHHHHHH
T ss_conf             897227682999999879--99799999989113867--------------------------------9-999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHH-HHHHHHC--CCH---HHHHHHHHHHHHH
Q ss_conf             5999988987202446776643000010221--783353002478632426-7733200--225---6899999999999
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDT-EKLRACG--HDL---ERLSVTLVQSFLL  276 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~-~~l~~~~--~d~---~~la~~l~~~~~~  276 (517)
                      .     .++.     .+.|.|.  +.|..+.  +.-.++|||++|. +.+. ......+  ..-   ..++..++.+.- 
T Consensus        52 ~-----~~~~-----~~hp~iv--~~~~~~~~~~~~~ivmE~~~~~-l~~~~~~~~~~~~~~~e~~~~~i~~qil~gl~-  117 (280)
T cd06617          52 I-----SMRS-----SDCPYTV--HFYGALFREGDVWICMEVMDTS-LDKFYKKVYKKGLTIPEDILGKIAVSVVKALE-  117 (280)
T ss_pred             H-----HHHH-----CCCCCEE--EEEEEEEECCEEEEEEECCCCC-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH-
T ss_conf             9-----9985-----7999875--6999998899899999937999-89999999864899989999999999999999-


Q ss_pred             HHHHC-CEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             89744-8661787862289802895357434031216989
Q gi|254780623|r  277 HTLRD-GFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       277 qi~~~-GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      -+-.. |+.|-|.-|.||+++.+|.+-+.|||..+.+.+.
T Consensus       118 ylH~~~~IiHRDiKP~NILl~~~g~iKl~DFGla~~~~~~  157 (280)
T cd06617         118 YLHEKLSVIHRDVKPSNILINRNGQVKLCDFGISGYLVDS  157 (280)
T ss_pred             HHHHCCCEEECCCCHHHEEECCCCCEEEEECCCCCCCCCC
T ss_conf             9975499885317689856779999999827676625677


No 298
>KOG2268 consensus
Probab=98.19  E-value=3.7e-06  Score=66.91  Aligned_cols=158  Identities=21%  Similarity=0.234  Sum_probs=101.7

Q ss_pred             CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             72368764031046887777889998753211468543346917999999988788865599998898720244677664
Q gi|254780623|r  146 YRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGF  225 (517)
Q Consensus       146 g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v  225 (517)
                      |.+.+.|+-|=|     ++-++.++.=-.++. ....+.++-+..+..            ..|-+-|+.+.+     ..+
T Consensus       116 G~~~~lK~HRLG-----RtSFR~Vk~kRDY~r-~r~~~sWlyLSRlaa------------~kEfafmkaL~e-----~gf  172 (465)
T KOG2268         116 GNPLILKLHRLG-----RTSFRNVKNKRDYLR-KRKSGSWLYLSRLAA------------TKEFAFMKALYE-----RGF  172 (465)
T ss_pred             CCCHHHHHHHHH-----HHHHHHHHHHHHHHH-CCCCCCHHHHHHHHH------------HHHHHHHHHHHH-----CCC
T ss_conf             780567787642-----146777654026676-178620134677777------------789999999987-----599


Q ss_pred             CCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEE
Q ss_conf             30000102217833530024786324267733200225689999999999989744866178786228980289535743
Q gi|254780623|r  226 RVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVD  305 (517)
Q Consensus       226 ~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lD  305 (517)
                      -||++++  +++.+.|||.++|.|+..+..+.    |+..+-..++....+ +-.+|+.|||-.-=||+|.+|++++.||
T Consensus       173 pVPkpiD--~~RH~Vvmelv~g~Pl~~v~~v~----d~~~ly~~lm~~Iv~-la~~GlIHgDFNEFNimv~dd~~i~vID  245 (465)
T KOG2268         173 PVPKPID--HNRHCVVMELVDGYPLRQVRHVE----DPPTLYDDLMGLIVR-LANHGLIHGDFNEFNIMVKDDDKIVVID  245 (465)
T ss_pred             CCCCCCC--CCCEEEHHHHHCCCCEEEEEECC----CHHHHHHHHHHHHHH-HHHCCCEECCCCHHEEEEECCCCEEEEE
T ss_conf             9997545--65312188764455300011147----868999999999999-9875933225305416871489779963


Q ss_pred             CCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             40312169899999997669997187278999999
Q gi|254780623|r  306 MGITGRLSKRERRFLAEILYGFISRDYQRVADVHF  340 (517)
Q Consensus       306 fG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~  340 (517)
                      |-.|-..+-...+.+.       ++|.+-+.+.+.
T Consensus       246 FPQmvS~sh~nA~~YF-------dRDv~Ci~~fFr  273 (465)
T KOG2268         246 FPQMVSTSHPNAEYYF-------DRDVECIRAFFR  273 (465)
T ss_pred             CHHHHCCCCCCCCEEE-------CCCHHHHHHHHH
T ss_conf             4575046788631000-------144899999999


No 299
>cd05037 PTK_Jak_rpt1 Pseudokinase (Repeat 1) Domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki
Probab=98.17  E-value=9.2e-06  Score=63.84  Aligned_cols=148  Identities=11%  Similarity=0.113  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      |.|++|+-|.||+|+++..  |..+++|..+               .++ ...+....               .-..+..
T Consensus         1 E~iG~G~FG~Vykg~~r~~--~~~~~~~~~~---------------~~~-v~~k~~~~---------------~~~~~~~   47 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQ--SDLDGVSPGK---------------DIS-VVLKVLDQ---------------SHRDSLA   47 (259)
T ss_pred             CCCCCCCCCEEEEEEECCC--CCCCCCCCCE---------------EEE-EEEEECCC---------------CCHHHHH
T ss_conf             9754898878998998689--8521000341---------------578-99984486---------------7328999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHC
Q ss_conf             5999988987202446776643000010221783353002478632426773320022---5689999999999989744
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHD---LERLSVTLVQSFLLHTLRD  281 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d---~~~la~~l~~~~~~qi~~~  281 (517)
                      |.+|++-+.+++.-+    -|.+=.++  ...+.+|||||++|-++.+.-.-.....+   +-.++..++.+ +.-+-..
T Consensus        48 f~~e~~~l~~l~Hpn----Iv~l~g~~--~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~~~i~~~ia~g-l~yLH~~  120 (259)
T cd05037          48 FFETASLMSQLSHKH----LVKLYGVC--VRDENIMVEEYVKFGPLDVFLHREKNNVTLHWKLDVAKQLASA-LHYLEDK  120 (259)
T ss_pred             HHHHHHHHHHCCCCC----CCEEEEEE--EECCCEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHHHC
T ss_conf             999999998689978----77098999--9899889998389988999884258999999999999999999-9999729


Q ss_pred             CEECCCCCCCEEEEECCCC-------EEEEECCHHEEC
Q ss_conf             8661787862289802895-------357434031216
Q gi|254780623|r  282 GFFHADLHPGNLFVDSKGY-------IVAVDMGITGRL  312 (517)
Q Consensus       282 GfFHaDPHpGNi~v~~dg~-------i~~lDfG~vg~l  312 (517)
                      |+.|.|..|.||+++.++.       +-+-|||.....
T Consensus       121 ~iiHrDlK~~NILl~~~~~~~~~~~~~kl~Dfg~~~~~  158 (259)
T cd05037         121 KLVHGNVCGKNILLAREGLNEGCVPFIKLSDPGIPITV  158 (259)
T ss_pred             CCCCCCCCCCEEEECCCCCCCCCCCCEEECCCCCCCCC
T ss_conf             95167765114897057876554541474357755304


No 300
>cd05077 PTK_Jak1_rpt1 Pseudokinase (Repeat 1) Domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom
Probab=98.15  E-value=9.1e-06  Score=63.88  Aligned_cols=139  Identities=11%  Similarity=0.164  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCC----------EEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf             66677888865555021288872----------36876403104688777788999875321146854334691799999
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYR----------KVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRA  194 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~----------~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e  194 (517)
                      |+|+.|+-|+||+|+++..+...          +||||+..++-                                    
T Consensus         1 e~lG~G~fG~VykG~~~~~~~~~~~~~~~~~~v~VaiK~~~~~~------------------------------------   44 (262)
T cd05077           1 EHLGRGTRTNIYSGTLNYKSDDDEDGYSYEKEIKVVLKVLDPSH------------------------------------   44 (262)
T ss_pred             CCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCC------------------------------------
T ss_conf             98876899779717970788643334455237899998679755------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCC---HHHHHHHH
Q ss_conf             9988788865599998898720244677664-3000010221783353002478632426773320022---56899999
Q gi|254780623|r  195 LEQVTKMEMDLRLEAAAFSEMAENTVKDQGF-RVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHD---LERLSVTL  270 (517)
Q Consensus       195 ~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v-~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d---~~~la~~l  270 (517)
                          ...+.+|.+|+.-+.+++.     |.| ..=.+.. -.....|||||++|-++.+.-.......+   +-++|..+
T Consensus        45 ----~~~~~~f~~Ev~il~~l~H-----pNIV~l~G~~~-~~~~~~lV~Ey~~~GsL~~~l~~~~~~l~~~~~~~ia~~i  114 (262)
T cd05077          45 ----RDISLAFFETASMMRQVSH-----KHIVLLYGVCV-RDQENIMVEEFVQFGPLDLFMHRKSDPLTTPWKFQVAKQL  114 (262)
T ss_pred             ----CHHHHHHHHHHHHHHHCCC-----CCCCCEEEEEE-ECCEEEEEEECCCCCCHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             ----0689999999999983899-----79872999999-8999899877999896999984189989999999999999


Q ss_pred             HHHHHHHHHHCCEECCCCCCCEEEEECCCC-------EEEEECCHHE
Q ss_conf             999999897448661787862289802895-------3574340312
Q gi|254780623|r  271 VQSFLLHTLRDGFFHADLHPGNLFVDSKGY-------IVAVDMGITG  310 (517)
Q Consensus       271 ~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~-------i~~lDfG~vg  310 (517)
                      +.+. .-+-..++.|.|.-|.|+++..+|.       +-+-|||+..
T Consensus       115 a~gl-~yLH~~~iiHrDlk~~NiLl~~~~~~~~~~~~~KlsDfG~~~  160 (262)
T cd05077         115 ASAL-SYLEDKDLVHGNVCTKNILLAREGIDTEGGPFIKLSDPGIPI  160 (262)
T ss_pred             HHHH-HHHHHCCCCCCCCCHHHEEEECCCCCCCCCCCEEECCCCCCC
T ss_conf             9999-999839943774343007882345555457736961588873


No 301
>KOG0595 consensus
Probab=98.15  E-value=3.2e-06  Score=67.41  Aligned_cols=138  Identities=22%  Similarity=0.290  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             66778888655550212888723687640310468877778899987532114685433469179999999887888655
Q gi|254780623|r  126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL  205 (517)
Q Consensus       126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~  205 (517)
                      -|+++|-|-||+|+.++  +|.+||||=..-.                    ++.+            +....+..|+-.
T Consensus        17 ~iG~GsfavVykg~h~~--~~~~VAIK~i~~~--------------------~l~~------------k~~e~L~~Ei~i   62 (429)
T KOG0595          17 EIGSGSFAVVYKGRHKK--SGTEVAIKCIAKK--------------------KLNK------------KLVELLLSEIKI   62 (429)
T ss_pred             HCCCCCEEEEEEEEECC--CCCEEEEEEEHHH--------------------CCCH------------HHHHHHHHHHHH
T ss_conf             20676127999867615--7846875400242--------------------0279------------999999999999


Q ss_pred             HHHHH--HHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH------
Q ss_conf             99998--8987202446776643000010221783353002478632426773320022568999999999998------
Q gi|254780623|r  206 RLEAA--AFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH------  277 (517)
Q Consensus       206 ~~Ea~--n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q------  277 (517)
                      ..|.+  |.-++-+....             .+.=.|||||++|--+++.  +...    ..+-+..++.|+.|      
T Consensus        63 Lkel~H~nIV~l~d~~~~-------------~~~i~lVMEyC~gGDLs~y--i~~~----~~l~e~t~r~Fm~QLA~alq  123 (429)
T KOG0595          63 LKELKHPNIVRLLDCIED-------------DDFIYLVMEYCNGGDLSDY--IRRR----GRLPEATARHFMQQLASALQ  123 (429)
T ss_pred             HHHCCCCCEEEEEEEEEC-------------CCEEEEEEEECCCCCHHHH--HHHC----CCCCHHHHHHHHHHHHHHHH
T ss_conf             985588555357788864-------------9869999875788888999--9872----78988999999999999999


Q ss_pred             -HHHCCEECCCCCCCEEEEECC------CCEEEEECCHHEECCHHH
Q ss_conf             -974486617878622898028------953574340312169899
Q gi|254780623|r  278 -TLRDGFFHADLHPGNLFVDSK------GYIVAVDMGITGRLSKRE  316 (517)
Q Consensus       278 -i~~~GfFHaDPHpGNi~v~~d------g~i~~lDfG~vg~l~~~~  316 (517)
                       +-..++.|=|.-|-||+++.+      ..+=+-|||....|++..
T Consensus       124 ~L~~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~~  169 (429)
T KOG0595         124 FLHENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPGS  169 (429)
T ss_pred             HHHHCCEEECCCCCCEEEECCCCCCCCCCEEEECCCCHHHHCCCHH
T ss_conf             9987790104678543771367777777557860443121178616


No 302
>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH). The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio
Probab=98.13  E-value=0.00013  Score=54.79  Aligned_cols=77  Identities=16%  Similarity=0.196  Sum_probs=50.2

Q ss_pred             CEECCCCCCCEEEEECCCCE-EEEECCHHEECCHHHHHHHHHHHHHHHCCC-HHHHHHHHHH-HHCCCCCCCHHHHHHHH
Q ss_conf             86617878622898028953-574340312169899999997669997187-2789999998-41266778936899999
Q gi|254780623|r  282 GFFHADLHPGNLFVDSKGYI-VAVDMGITGRLSKRERRFLAEILYGFISRD-YQRVADVHFE-AGYVPRHHNRFSFAQAI  358 (517)
Q Consensus       282 GfFHaDPHpGNi~v~~dg~i-~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D-~~~~~~~l~~-lg~~~~~~d~~~~~~~i  358 (517)
                      -+-|||++++|+++++ |++ ++||||..|.=|+..=-++  ....+..+- .+...+.+.+ -|...++.++-.|++-+
T Consensus       164 v~~HGD~~~~N~l~~~-~~~~g~iD~~~~g~aDr~~DLa~--~~~sl~~n~~~~~~~~~Fl~~YG~~~~D~~rl~~y~lL  240 (244)
T cd05150         164 VVTHGDACLPNIIVDP-GKFSGFIDLGRLGVADRYQDLAL--AVRSLRENLGGEEYAARFLDRYGIDAPDPEKLAYYRLL  240 (244)
T ss_pred             EEECCCCCCCCEEEEC-CEEEEEEECCCCCCCCHHHHHHH--HHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf             7877888888889858-91899997666677777999999--99677530698389999999809998998999999988


Q ss_pred             HHH
Q ss_conf             985
Q gi|254780623|r  359 RAI  361 (517)
Q Consensus       359 ~~~  361 (517)
                      .++
T Consensus       241 DEf  243 (244)
T cd05150         241 DEF  243 (244)
T ss_pred             HHH
T ss_conf             743


No 303
>cd05151 ChoK Choline Kinase (ChoK). The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph
Probab=98.11  E-value=8.3e-06  Score=64.15  Aligned_cols=105  Identities=24%  Similarity=0.274  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             65599998898720244677664300001022178335300247863242677332002256899999999999897448
Q gi|254780623|r  203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDG  282 (517)
Q Consensus       203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~G  282 (517)
                      +|-.+|..+++..++.     .+ .|+++.--....++++||++|.+++..+.....  ...++|+.+-+.--..+....
T Consensus        37 idR~~E~~~~~~~~~~-----gl-~P~~~~~d~~~g~~i~e~i~g~~~~~~~~~~~~--~~~~la~~l~~lH~~~~~~~v  108 (170)
T cd05151          37 INRENEAENSKLAAEA-----GI-GPKLYYFDPETGVLITEFIEGSELLTEDFSDPE--NLEKIAKLLKKLHSSPLPDLV  108 (170)
T ss_pred             CCHHHHHHHHHHHHHC-----CC-CCEEEEEECCCCEEEEEEECCCCCCCHHHCCHH--HHHHHHHHHHHHHCCCCCCCE
T ss_conf             0899999999999974-----99-982799966899699997668505821208999--999999999998579999966


Q ss_pred             EECCCCCCCEEEEECCCCEEEEECCHHEECCHHH
Q ss_conf             6617878622898028953574340312169899
Q gi|254780623|r  283 FFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRE  316 (517)
Q Consensus       283 fFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~  316 (517)
                      +-|.|+|||||+++ ++++.+|||--.|-=++..
T Consensus       109 ~cHnDl~~~Nil~~-~~~~~lIDwEYa~~~dp~f  141 (170)
T cd05151         109 PCHNDLLPGNFLLD-DGRLWLIDWEYAGMNDPLF  141 (170)
T ss_pred             ECCCCCCCCCEEEE-CCEEEEEEHHHCCCCCHHH
T ss_conf             02688980219988-9908998401256788799


No 304
>KOG0605 consensus
Probab=98.07  E-value=7.7e-06  Score=64.44  Aligned_cols=149  Identities=23%  Similarity=0.314  Sum_probs=94.7

Q ss_pred             HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             9867--66677888865555021288872368764031046887777889998753211468543346917999999988
Q gi|254780623|r  121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV  198 (517)
Q Consensus       121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  198 (517)
                      ..|+  .+|+-|--|+|+-|+-+|  +|+-.|.|+.+-       .++--...                        ...
T Consensus       141 ~DFe~Lk~IgkGAfGeVrLarKk~--Tg~iyAmK~LkK-------S~M~~~~Q------------------------v~h  187 (550)
T KOG0605         141 DDFELLKVIGKGAFGEVRLARKKD--TGEIYAMKILKK-------SEMLKKNQ------------------------VEH  187 (550)
T ss_pred             CCCHHHEEECCCCCEEEEEEEECC--CCCEEEEECCCH-------HHHHHHHH------------------------HHH
T ss_conf             111333034466530689999726--786786410027-------77776431------------------------777


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHH-HHHCCC-----HHHHHHHH
Q ss_conf             7888655999988987202446776643000010221783--353002478632426773-320022-----56899999
Q gi|254780623|r  199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKL-RACGHD-----LERLSVTL  270 (517)
Q Consensus       199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l-~~~~~d-----~~~la~~l  270 (517)
                      ++.|-|...|           .++++|  =+.|-.+-.+.  -|+|||++|-   |...| ...+.-     +--+|+..
T Consensus       188 V~aERdiL~~-----------~ds~~v--VKLyYsFQD~~~LYLiMEylPGG---D~mTLL~~~~~L~e~~arfYiaE~v  251 (550)
T KOG0605         188 VRAERDILAE-----------VDSPWV--VKLYYSFQDKEYLYLIMEYLPGG---DMMTLLMRKDTLTEDWARFYIAETV  251 (550)
T ss_pred             HHHHHHHHHH-----------CCCCCE--EEEEEEECCCCEEEEEEEECCCC---CHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             8889887640-----------477767--88888850787059999713784---3999987358674478999999999


Q ss_pred             HHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHH
Q ss_conf             99999989744866178786228980289535743403121698999999
Q gi|254780623|r  271 VQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFL  320 (517)
Q Consensus       271 ~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l  320 (517)
                      +  -..-|-.+|+.|-|.-|-|++++..|.|=+-|||.+.-+....+..+
T Consensus       252 l--AI~~iH~~gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~~~~~~~~  299 (550)
T KOG0605         252 L--AIESIHQLGYIHRDIKPDNLLIDAKGHIKLSDFGLSTGLDKKHRIES  299 (550)
T ss_pred             H--HHHHHHHCCCCCCCCCHHHEEECCCCCEEECCCCCCCHHHHHHHHHH
T ss_conf             9--99999875851256774444565779776001346613343103443


No 305
>KOG0667 consensus
Probab=98.01  E-value=1.1e-05  Score=63.33  Aligned_cols=178  Identities=21%  Similarity=0.300  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHH--HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             766677888865555021288872368764031046--887777889998753211468543346917999999988788
Q gi|254780623|r  124 DDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVR--KRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKM  201 (517)
Q Consensus       124 dePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~--~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~  201 (517)
                      +|.|+.||-|||-+|.=+.  +|+.|||||.+-.-.  .+-...+++|..+    .+.-|.                   
T Consensus       191 ~e~LGkGtFGQVvk~~d~~--T~e~VAIKIiKN~k~f~~Q~~~Ei~iL~~l----n~~d~~-------------------  245 (586)
T KOG0667         191 LEVLGKGSFGQVVKAYDHK--TGEIVAIKIIKNKKRFLRQAQIEIRILELL----NKHDPD-------------------  245 (586)
T ss_pred             EEEECCCCCCEEEEEEECC--CCCEEEEEEECCCHHHHHHHHHHHHHHHHH----HCCCCC-------------------
T ss_conf             9875353340369988668--883899986005867888999999999997----452887-------------------


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHH---HCCCH---HHHHHHHHHH
Q ss_conf             865599998898720244677664300001022178--335300247863242677332---00225---6899999999
Q gi|254780623|r  202 EMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRA---CGHDL---ERLSVTLVQS  273 (517)
Q Consensus       202 ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~---~~~d~---~~la~~l~~~  273 (517)
                                           ....|=+.|+-+--+  -+||-|-.+ ..+-+.  ++.   .|...   +.++..++.+
T Consensus       246 ---------------------~~~n~Vrm~d~F~fr~HlciVfELL~-~NLYel--lK~n~f~Glsl~~ir~~~~Qil~~  301 (586)
T KOG0667         246 ---------------------DKYNIVRMLDYFYFRNHLCIVFELLS-TNLYEL--LKNNKFRGLSLPLVRKFAQQILTA  301 (586)
T ss_pred             ---------------------CCCCEEEEEEECCCCCCEEEEEHHHH-HHHHHH--HHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             ---------------------77106986640110562255303446-469999--973588888889999999999999


Q ss_pred             HHHHHHHCCEECCCCCCCEEEEECC--CCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCH
Q ss_conf             9998974486617878622898028--95357434031216989999999766999718727899999984126677893
Q gi|254780623|r  274 FLLHTLRDGFFHADLHPGNLFVDSK--GYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNR  351 (517)
Q Consensus       274 ~~~qi~~~GfFHaDPHpGNi~v~~d--g~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~  351 (517)
                      . ..+-+.|..|||+-|-|||+-.-  .+|=+||||.....++..-.    .+++    -+.++-|.++.+-+ ...+|.
T Consensus       302 L-~~L~~l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~q~vyt----YiQS----RfYRAPEVILGlpY-~~~IDm  371 (586)
T KOG0667         302 L-LFLHELGIIHCDLKPENILLKDPKRSRIKVIDFGSSCFESQRVYT----YIQS----RFYRAPEVILGLPY-DTAIDM  371 (586)
T ss_pred             H-HHHHHCCEEECCCCHHHEEECCCCCCCEEEEECCCCCCCCCCCEE----EEEC----CCCCCCHHHCCCCC-CCCCCE
T ss_conf             9-999867962425875765641677676169844531114775224----3312----02466453106876-872123


Q ss_pred             HHHHHHHHH
Q ss_conf             689999998
Q gi|254780623|r  352 FSFAQAIRA  360 (517)
Q Consensus       352 ~~~~~~i~~  360 (517)
                      =.|---+.+
T Consensus       372 WSLGCIlAE  380 (586)
T KOG0667         372 WSLGCILAE  380 (586)
T ss_pred             EEHHHHHHH
T ss_conf             304346776


No 306
>KOG0660 consensus
Probab=97.97  E-value=1.5e-05  Score=62.13  Aligned_cols=181  Identities=20%  Similarity=0.284  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +|++.++-|.|-.|+-+.  +|+.||||    .|.+.++.-+                            ..+...+|+-
T Consensus        28 ~~iG~GAyGvVcsA~~~~--t~~~VAIK----Ki~~~F~~~~----------------------------~akRtlRElk   73 (359)
T KOG0660          28 EPIGRGAYGVVCSAKDKR--TGEKVAIK----KILNPFENQI----------------------------DAKRTLRELK   73 (359)
T ss_pred             CCCCCCCEEEEEEEEECC--CCCEEEHH----HHHHHHHCHH----------------------------HHHHHHHHHH
T ss_conf             103577332277778868--99774042----3025553668----------------------------8999999999


Q ss_pred             HHHHHHHHHHHH-CCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH---
Q ss_conf             599998898720-2446776643000010221783353002478632426773320022568999999999998974---
Q gi|254780623|r  205 LRLEAAAFSEMA-ENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLR---  280 (517)
Q Consensus       205 ~~~Ea~n~~~~~-~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~---  280 (517)
                      +.      ++|+ +|.-...+|..|....++ ..=-+|+|+++    +|+..+-..+   +.+.+.-+..|+.|++.   
T Consensus        74 lL------r~~~HeNIi~l~di~~p~~~~~f-~DvYiV~elMe----tDL~~iik~~---~~L~d~H~q~f~YQiLrgLK  139 (359)
T KOG0660          74 LL------RHLRHENIIGLLDIFRPPSRDKF-NDVYLVFELME----TDLHQIIKSQ---QDLTDDHAQYFLYQILRGLK  139 (359)
T ss_pred             HH------HHHCCCCCCEEEEECCCCCCCCC-CEEEEEHHHHH----HHHHHHHHCC---CCCCHHHHHHHHHHHHHHCC
T ss_conf             99------97068881337761157644456-51687550776----5899998708---55228999999999998331


Q ss_pred             ----CCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf             ----4866178786228980289535743403121698999999976699971872789999998412667789368999
Q gi|254780623|r  281 ----DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQ  356 (517)
Q Consensus       281 ----~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~  356 (517)
                          -|.+|-|.-|+|+++..+..+.+.|||+...+++.   .-...+..-+.--..++-+.++.+...+..+|.=..--
T Consensus       140 yiHSAnViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~~---~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGC  216 (359)
T KOG0660         140 YIHSANVIHRDLKPSNLLLNADCDLKICDFGLARYLDKF---FEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGC  216 (359)
T ss_pred             HHHCCCCCCCCCCHHHEEECCCCCEEECCCCCEEECCCC---CCCCCHHCCEEEEEECCHHHHHCCCCCCCHHHHHHHHH
T ss_conf             331166034556644525526788785366531322666---76320113234444127788734132451011354658


No 307
>PTZ00284 protein kinase; Provisional
Probab=97.96  E-value=3.8e-05  Score=59.04  Aligned_cols=180  Identities=17%  Similarity=0.169  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECC--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031--0468877778899987532114685433469179999999887888
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRP--GVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME  202 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP--~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E  202 (517)
                      +-|+.||-|||++|.=+.  +|+.|||||.|-  .-.+.-..++.+|+.+.    ..-|..                   
T Consensus       135 ~~LG~GtFG~V~kc~D~k--t~~~VAIKIIRn~~~y~~qA~~EI~IL~~L~----~~D~~~-------------------  189 (467)
T PTZ00284        135 SLLGEGTFGKVVEAWDRK--RKEYCAVKIVRNVPKYTRDAKIEIQFMEKVR----QADPAD-------------------  189 (467)
T ss_pred             EEEEECCCEEEEEEEECC--CCCEEEEEEECCCHHHHHHHHHHHHHHHHHH----HCCCCC-------------------
T ss_conf             468423272999999999--9959999997285789999999999999997----449767-------------------


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHH-CCCHHHH---HHHHHHHHHHHH
Q ss_conf             655999988987202446776643000010221783353002478632426773320-0225689---999999999989
Q gi|254780623|r  203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRAC-GHDLERL---SVTLVQSFLLHT  278 (517)
Q Consensus       203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~-~~d~~~l---a~~l~~~~~~qi  278 (517)
                                        ...-|+.=..+...++.-+||+|.. |..+-|.  +... +.....+   +..++.+. .-+
T Consensus       190 ------------------~~~iVrl~d~F~~~~gHlCIVFElL-G~nLyd~--Lkk~~pf~~~~i~~i~~Qll~aL-~yL  247 (467)
T PTZ00284        190 ------------------RFPLMKIQRYFQNETGHMCIVMPKY-GPCLLDW--IMKHGPFSHRHLAQIIFQTGVAL-DYF  247 (467)
T ss_pred             ------------------CCCEEEEEHEEECCCCEEEEEECCC-CHHHHHH--HHHCCCCCHHHHHHHHHHHHHHH-HHH
T ss_conf             ------------------7466872100515997799998345-6759999--99709997789999999999999-998


Q ss_pred             HHC-CEECCCCCCCEEEEECCC----------------CEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             744-866178786228980289----------------535743403121698999999976699971872789999998
Q gi|254780623|r  279 LRD-GFFHADLHPGNLFVDSKG----------------YIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFE  341 (517)
Q Consensus       279 ~~~-GfFHaDPHpGNi~v~~dg----------------~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~  341 (517)
                      -.+ |..|+|.-|-||++...+                +|-++|||....-+...        ...+.--..+.-|.++.
T Consensus       248 H~~~~IIHtDLKPENILL~~~~~~~d~~~~~~~~~~~~~IKlIDFGSAc~~~~~~--------~tyi~Tr~YRaPEvilg  319 (467)
T PTZ00284        248 HTELHLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLGGCCDERHSR--------TAIVSTRHYRSPEVVLG  319 (467)
T ss_pred             HHCCCEEECCCCHHHEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC--------CEEECCCCCCCHHEEEC
T ss_conf             5537977423899993125677544532234578987637994357666677784--------40223655578211765


Q ss_pred             HHCCCCCCCHHHHHHHHHH
Q ss_conf             4126677893689999998
Q gi|254780623|r  342 AGYVPRHHNRFSFAQAIRA  360 (517)
Q Consensus       342 lg~~~~~~d~~~~~~~i~~  360 (517)
                      +++. ..+|.=.+---+.+
T Consensus       320 ~~y~-~~~DiWS~gCi~~E  337 (467)
T PTZ00284        320 LGWM-YSTDMWSMGCIIYE  337 (467)
T ss_pred             CCCC-CCHHHHHHHHHHHH
T ss_conf             8988-70788888899999


No 308
>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins. This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain
Probab=97.95  E-value=6.1e-05  Score=57.47  Aligned_cols=144  Identities=18%  Similarity=0.232  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             66778888655550212888723687640310468877778899987532114685433469179999999887888655
Q gi|254780623|r  126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL  205 (517)
Q Consensus       126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~  205 (517)
                      ++..+.--++|+-++.+   |+++|+|.+-|+...                    +                   ...|.
T Consensus         5 ~l~gG~sn~t~~v~~~~---~~~~VlR~~p~~~~~--------------------~-------------------~~~~~   42 (223)
T cd05154           5 QLSGGQSNLTYLLTAGG---GRRLVLRRPPPGALL--------------------P-------------------SAHDV   42 (223)
T ss_pred             ECCCCCCCCEEEEEECC---CCEEEEECCCCCCCC--------------------C-------------------CCCCH
T ss_conf             76997655569999799---968999718988888--------------------6-------------------63037


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC-----EEEEECCCCCCCCHH----------------------HHHHH
Q ss_conf             999988987202446776643000010221783-----353002478632426----------------------77332
Q gi|254780623|r  206 RLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD-----VITMEWIDGVKISDT----------------------EKLRA  258 (517)
Q Consensus       206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~-----VLvmE~i~G~~i~d~----------------------~~l~~  258 (517)
                      .+|++-++..++     ..+-+|+|+.--+...     -++|||++|.++++.                      ..++.
T Consensus        43 ~rE~~vl~~L~~-----~~vPvP~v~~~~~~~~~~G~pf~vm~~i~G~~~~~~~~~~~~~~~~r~~l~~~~~~~La~lH~  117 (223)
T cd05154          43 AREYRVLRALAG-----TGVPVPKVLALCEDPSVLGTPFYVMERVDGRVLRDRLLRPELSPEERRALARALADTLAALHS  117 (223)
T ss_pred             HHHHHHHHHHHC-----CCCCCCEEEEECCCCCCCCCCEEEEEEECCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999998656-----699976189982688747875699973265524876666679999999999999999999846


Q ss_pred             HC-----CC----HHHHHHHHHHHH--------------HHHHH-----------HCCEECCCCCCCEEEEECC-CCE-E
Q ss_conf             00-----22----568999999999--------------99897-----------4486617878622898028-953-5
Q gi|254780623|r  259 CG-----HD----LERLSVTLVQSF--------------LLHTL-----------RDGFFHADLHPGNLFVDSK-GYI-V  302 (517)
Q Consensus       259 ~~-----~d----~~~la~~l~~~~--------------~~qi~-----------~~GfFHaDPHpGNi~v~~d-g~i-~  302 (517)
                      ..     ..    ...-.+..+..+              +.++.           .-.+.|+|.|||||+++++ |+| +
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~~~~~L~HgD~~~~Nilv~~~~~~i~g  197 (223)
T cd05154         118 VDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPAMERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVA  197 (223)
T ss_pred             CCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEECCCCCEEE
T ss_conf             89767685325789857999999999999874267873799999998855777688505627888870899389994899


Q ss_pred             EEECCHHEECCHHH
Q ss_conf             74340312169899
Q gi|254780623|r  303 AVDMGITGRLSKRE  316 (517)
Q Consensus       303 ~lDfG~vg~l~~~~  316 (517)
                      +|||-+++-=+|..
T Consensus       198 VlDWE~a~~GdP~~  211 (223)
T cd05154         198 VLDWELATLGDPLA  211 (223)
T ss_pred             EEECCCCCCCCHHH
T ss_conf             98231256288499


No 309
>KOG4250 consensus
Probab=97.95  E-value=2.3e-06  Score=68.46  Aligned_cols=149  Identities=23%  Similarity=0.343  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHH----HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             76667788886555502128887236876403104----68877778899987532114685433469179999999887
Q gi|254780623|r  124 DDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGV----RKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT  199 (517)
Q Consensus       124 dePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i----~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  199 (517)
                      ++-+|-|--|+||+++=+.  +|+.||||+-++--    .++.-..+.+|+.+              +.+.+|.-|    
T Consensus        18 ~e~LG~Ga~g~V~rgrnke--tG~~vAvK~~~~~~~~r~~e~~~~EieilkKL--------------nh~NIVk~f----   77 (732)
T KOG4250          18 DERLGKGAFGNVYRGRNKE--TGRLVAVKTFNKESSLRPRERWCREIEILKKL--------------NHPNIVKLF----   77 (732)
T ss_pred             HHHHCCCCCCEEEEECCCC--CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHC--------------CCHHHHHHC----
T ss_conf             3132477540146511256--56120387640212666299999999999970--------------742143300----


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHH--HHHHCCCHHHHHHHHHH--HHH
Q ss_conf             88865599998898720244677664300001022178335300247863242677--33200225689999999--999
Q gi|254780623|r  200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEK--LRACGHDLERLSVTLVQ--SFL  275 (517)
Q Consensus       200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~--l~~~~~d~~~la~~l~~--~~~  275 (517)
                                           +.+.=..|  +. -+...||+|||+.|-++...-.  -.+.|..-.++-..+.+  +-+
T Consensus        78 ---------------------~iee~~~~--~~-~~~~~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al  133 (732)
T KOG4250          78 ---------------------DIEETKFL--GL-VTRLPVLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSAL  133 (732)
T ss_pred             ---------------------CCCCCCCC--CC-CCCCCEEEEEECCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             ---------------------66776555--74-6666468886067876998864921136997899999999999999


Q ss_pred             HHHHHCCEECCCCCCCEEEEE--CCCCEE--EEECCHHEECCHHH
Q ss_conf             989744866178786228980--289535--74340312169899
Q gi|254780623|r  276 LHTLRDGFFHADLHPGNLFVD--SKGYIV--AVDMGITGRLSKRE  316 (517)
Q Consensus       276 ~qi~~~GfFHaDPHpGNi~v~--~dg~i~--~lDfG~vg~l~~~~  316 (517)
                      +-+=++|..|-|.-||||+..  .||+.+  +.|||....++++.
T Consensus       134 ~~LrEn~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d~s  178 (732)
T KOG4250         134 RHLRENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELDDNS  178 (732)
T ss_pred             HHHHHCCCEECCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCC
T ss_conf             999876921046887707886368872477641354434688887


No 310
>KOG0193 consensus
Probab=97.94  E-value=1.3e-05  Score=62.75  Aligned_cols=146  Identities=17%  Similarity=0.247  Sum_probs=93.5

Q ss_pred             CCHHHHHHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf             88999999867--6667788886555502128887236876403104688777788999875321146854334691799
Q gi|254780623|r  114 APIEELYCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAV  191 (517)
Q Consensus       114 ~~~~~~F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~  191 (517)
                      ..|+..+.++.  ++|++||.|-||||..|    | +||||+..=                    +  .|.      ++-
T Consensus       385 ~~WeIp~~ev~l~~rIGsGsFGtV~Rg~wh----G-dVAVK~Lnv--------------------~--~pt------~~q  431 (678)
T KOG0193         385 EEWEIPPEEVLLGERIGSGSFGTVYRGRWH----G-DVAVKLLNV--------------------D--DPT------PEQ  431 (678)
T ss_pred             CCCCCCHHHHHCCCEECCCCCCCEEECCCC----C-CEEEEEEEC--------------------C--CCC------HHH
T ss_conf             121468778510340046654115641040----4-237999815--------------------7--899------999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHH---H
Q ss_conf             9999988788865599998898720244677664300001022178--3353002478632426773320022568---9
Q gi|254780623|r  192 VRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLER---L  266 (517)
Q Consensus       192 ~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~---l  266 (517)
                      ++          -|.+|..|+++-|...-    +    .|..||++  -.+|..|++|-++-..-...+...|+.+   +
T Consensus       432 lq----------aFKnEVa~lkkTRH~NI----l----LFMG~~~~p~~AIiTqwCeGsSLY~hlHv~etkfdm~~~idI  493 (678)
T KOG0193         432 LQ----------AFKNEVAVLKKTRHENI----L----LFMGACMNPPLAIITQWCEGSSLYTHLHVQETKFDMNTTIDI  493 (678)
T ss_pred             HH----------HHHHHHHHHHHCCHHHH----E----EEEHHHCCCCEEEEEHHCCCCHHHHHCCCHHHHHHHHHHHHH
T ss_conf             99----------99999998752121120----1----111211488604422022674055410003566648999999


Q ss_pred             HHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             999999999989744866178786228980289535743403121
Q gi|254780623|r  267 SVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       267 a~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                      |+...... .=+--.+..|-|.---|||+.+|+++++-|||+.+.
T Consensus       494 AqQiaqGM-~YLHAK~IIHrDLKSnNIFl~~~~kVkIgDFGLatv  537 (678)
T KOG0193         494 AQQIAQGM-DYLHAKNIIHRDLKSNNIFLHEDLKVKIGDFGLATV  537 (678)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHCCCCCEEECCCCCEEEECCCCEEE
T ss_conf             99998765-056553144311022646870588489831320454


No 311
>KOG0600 consensus
Probab=97.93  E-value=2.1e-05  Score=61.08  Aligned_cols=154  Identities=18%  Similarity=0.306  Sum_probs=98.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             47889999998676667788886555502128887236876403-----1046887777889998753211468543346
Q gi|254780623|r  112 LKAPIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIR-----PGVRKRFFRDIQVMYLIARIQEKLLPSMRRL  186 (517)
Q Consensus       112 lg~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~r-----P~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~  186 (517)
                      ++..-.+.|..+ +-|+-+.-||||+|+=.+  +|+-||.|=.|     ||-...+.+++.+|+.+-      .|     
T Consensus       111 w~~r~~~~feki-~kIGeGTyg~VYkAr~~~--tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~------Hp-----  176 (560)
T KOG0600         111 WGPRRADSFEKI-EKIGEGTYGQVYKARDLE--TGKIVALKKVRFDNEKEGFPITAIREIKILRRLD------HP-----  176 (560)
T ss_pred             CCCCCHHHHHHH-HHHCCCCHHHEEEEEECC--CCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCC------CC-----
T ss_conf             441426888988-876476302325702336--6867898876404577765177899999998538------98-----


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHH-CCCHHH
Q ss_conf             9179999999887888655999988987202446776643000010221783353002478632426773320-022568
Q gi|254780623|r  187 CFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRAC-GHDLER  265 (517)
Q Consensus       187 ~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~-~~d~~~  265 (517)
                                                     |.-.-..+++    ..+++.=-||.||++-    |+..+-.. ++   +
T Consensus       177 -------------------------------NIikL~eivt----~~~~~siYlVFeYMdh----DL~GLl~~p~v---k  214 (560)
T KOG0600         177 -------------------------------NIIKLEEIVT----SKLSGSIYLVFEYMDH----DLSGLLSSPGV---K  214 (560)
T ss_pred             -------------------------------CCCCEEEEEE----ECCCCEEEEEEECCCC----HHHHHHCCCCC---C
T ss_conf             -------------------------------6111114788----3378518998733563----25554307886---6


Q ss_pred             HHHHHHHHHHHHHH-------HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHH
Q ss_conf             99999999999897-------448661787862289802895357434031216989999999
Q gi|254780623|r  266 LSVTLVQSFLLHTL-------RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLA  321 (517)
Q Consensus       266 la~~l~~~~~~qi~-------~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~  321 (517)
                      +.+-=+.+|++|++       ..|+.|-|--.-||+++.+|.+-+-|||+....++.....+.
T Consensus       215 ft~~qIKc~mkQLl~Gl~~cH~~gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~~~~~T  277 (560)
T KOG0600         215 FTEPQIKCYMKQLLEGLEYCHSRGVLHRDIKGSNILIDNNGVLKIADFGLARFYTPSGSAPYT  277 (560)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCEEECCCCCEEECCCCCEEECCCCCCCCCC
T ss_conf             670789999999999987776458310346502067858897776244432211577776666


No 312
>cd05076 PTK_Tyk2_rpt1 Pseudokinase (Repeat 1) Domain of the Protein Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt
Probab=97.92  E-value=4.5e-06  Score=66.24  Aligned_cols=155  Identities=10%  Similarity=0.111  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHEECCCCCCEEEEEEECCH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             6778888655550212888723687640310-468877778899987532114685433469179999999887888655
Q gi|254780623|r  127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPG-VRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL  205 (517)
Q Consensus       127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~-i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~  205 (517)
                      |+.|+.|+||+|+|+..+ |..+++++.-.. ....-..+-+-++-+.+.++   +.               .-....+|
T Consensus         3 lG~G~fG~VYkG~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~v~~k~l~---~~---------------~~~~~~~F   63 (274)
T cd05076           3 LGQGTRTNIYDGRLRVEG-GGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLD---PS---------------HRDIALAF   63 (274)
T ss_pred             CCCCCCCEEEEEEEECCC-CCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECC---CC---------------CCHHHHHH
T ss_conf             885798248999980688-765310011111000012345714558999728---64---------------43469999


Q ss_pred             HHHHHHHHHHHCCCCCCCC-CCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCC---HHHHHHHHHH--HHHHHHH
Q ss_conf             9999889872024467766-43000010221783353002478632426773320022---5689999999--9999897
Q gi|254780623|r  206 RLEAAAFSEMAENTVKDQG-FRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHD---LERLSVTLVQ--SFLLHTL  279 (517)
Q Consensus       206 ~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d---~~~la~~l~~--~~~~qi~  279 (517)
                      .+|+.-+.+++.     |. |.+-.+..+ ..+..|||||++|-++.+.-.-.....+   +-.+|..++.  .|++   
T Consensus        64 ~~E~~il~~l~H-----pNIv~l~G~c~~-~~~~~lV~Ey~~~GsL~~~L~~~~~~~~~~~~~~ia~~ia~gl~YLH---  134 (274)
T cd05076          64 FETASLMSQVSH-----IHLAFVHGVCVR-GSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALSYLE---  134 (274)
T ss_pred             HHHHHHHHHCCC-----CCEEEEEEEEEE-CCEEEEEEECCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH---
T ss_conf             999999980899-----888369999998-99979998899989099997348999999999999999999999985---


Q ss_pred             HCCEECCCCCCCEEEEECCCC-------EEEEECCHH
Q ss_conf             448661787862289802895-------357434031
Q gi|254780623|r  280 RDGFFHADLHPGNLFVDSKGY-------IVAVDMGIT  309 (517)
Q Consensus       280 ~~GfFHaDPHpGNi~v~~dg~-------i~~lDfG~v  309 (517)
                      ..|+.|.|.-|.||+++..|.       +-+-|||+.
T Consensus       135 ~~~iiHRDlk~~NiLl~~~~~~~~~~~~vKi~DfG~s  171 (274)
T cd05076         135 DKNLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVS  171 (274)
T ss_pred             HCCCCCCCCCHHHEEECCCCCCCCCCCCEEECCCCCC
T ss_conf             2895677655644522133545566771374278766


No 313
>pfam01636 APH Phosphotransferase enzyme family. This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881.
Probab=97.91  E-value=9.2e-05  Score=56.06  Aligned_cols=183  Identities=17%  Similarity=0.185  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH--------HH
Q ss_conf             666778888655550212888723687640310-468877778899987532114685433469179999--------99
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPG-VRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVR--------AL  195 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~-i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~--------e~  195 (517)
                      +|+.+++..++|+-...    +++.++|+-+++ -...+.....++.++....-. .|..-..+...-+.        -.
T Consensus         3 ~~~~~G~~n~~~~~~~~----~~~~vlr~~~~~~~~~~~~~e~~~l~~L~~~~~~-vP~~~~~~~~~~~~~~~~~~~~~i   77 (239)
T pfam01636         3 RPLSGGASNRTYLVGTG----DGRYVLKLAPPAEAAEELRRELALLRHLAAAGIP-VPRVLAGGTDGGGLGLPFLLMEGL   77 (239)
T ss_pred             CCCCCCCCCCEEEEEEC----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC-CCCEEECCCCCCCCCCCEEEEEEE
T ss_conf             76689755354999949----9318999899886755578999999998733999-982533366754468767999864


Q ss_pred             HHHHHHHHH---HHHHHHHHHHHHCCCCCCCCC---CCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf             988788865---599998898720244677664---30000102217833530024786324267733200225689999
Q gi|254780623|r  196 EQVTKMEMD---LRLEAAAFSEMAENTVKDQGF---RVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVT  269 (517)
Q Consensus       196 ~~~l~~ElD---~~~Ea~n~~~~~~~~~~~~~v---~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~  269 (517)
                      .-....+.+   -..+.+..+.+++.++....+   ..|...  .+....-...++........  ..........+.+.
T Consensus        78 ~g~~~~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  153 (239)
T pfam01636        78 PGEDLTRDDLLDLAERGALLEALARLLARLHSVPPEALPLAR--RLARRLKLLRQLAAALARLV--AAELLDSLAELWER  153 (239)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHH--CCCCCCCHHHHHHH
T ss_conf             671346776313589999999999999999659975578432--23132789999999998752--22234438999999


Q ss_pred             HHHHHHHHH--HHCCEECCCCCCCEEEEECCCCEE-EEECCHHEECCHHH
Q ss_conf             999999989--744866178786228980289535-74340312169899
Q gi|254780623|r  270 LVQSFLLHT--LRDGFFHADLHPGNLFVDSKGYIV-AVDMGITGRLSKRE  316 (517)
Q Consensus       270 l~~~~~~qi--~~~GfFHaDPHpGNi~v~~dg~i~-~lDfG~vg~l~~~~  316 (517)
                      ....+....  ...++.|+|.||+|++++++++++ +|||+.++.=++..
T Consensus       154 ~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~v~giID~e~a~~g~~~~  203 (239)
T pfam01636       154 LLAALLALLPALPPVLVHGDLHPGNLLVDPGGRVSGVIDFEDAGLGDPAY  203 (239)
T ss_pred             HHHHHHHCCCCCCCEEEECCCCCCEEEECCCCCEEEEEECHHCCCCCHHH
T ss_conf             99999853986895588478998818985999589998103237589999


No 314
>KOG0610 consensus
Probab=97.88  E-value=5.9e-05  Score=57.55  Aligned_cols=144  Identities=17%  Similarity=0.193  Sum_probs=92.6

Q ss_pred             HHHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf             999867--666778888655550212888723687640310468877778899987532114685433469179999999
Q gi|254780623|r  119 LYCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALE  196 (517)
Q Consensus       119 ~F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~  196 (517)
                      -+.+|+  .-++++.||-||-|.+.+  ++.--|+||.--..-..                +  ....+.       +.+
T Consensus        75 ~l~~f~llk~LG~GdiG~VyL~~l~~--t~~~fAmKVmdK~~l~~----------------r--kKl~Ra-------~tE  127 (459)
T KOG0610          75 GLRHFRLLKRLGCGDIGTVYLVELRG--TNCLFAMKVMDKESLAS----------------R--KKLKRA-------QTE  127 (459)
T ss_pred             CHHHHHHHHHCCCCCCEEEEEEEECC--CCCEEEEEEECHHHHHH----------------H--HHHHHH-------HHH
T ss_conf             88898999980899850699999668--98447888724898866----------------6--677888-------889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             887888655999988987202446776643000010221783--353002478632426773320022568999999999
Q gi|254780623|r  197 QVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSF  274 (517)
Q Consensus       197 ~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~  274 (517)
                      +.|                   ++-.+.=.+|..|..+.|++  .|||||+.|--+   ..+....- -+.+.+.-+++|
T Consensus       128 ~eI-------------------L~~lDHPFlPTLYa~fet~~~~cl~meyCpGGdL---~~LrqkQp-~~~fse~~aRFY  184 (459)
T KOG0610         128 REI-------------------LSLLDHPFLPTLYASFETDKYSCLVMEYCPGGDL---HSLRQKQP-GKRFSESAARFY  184 (459)
T ss_pred             HHH-------------------HHHCCCCCCCHHHHEEECCCEEEEEEECCCCCCH---HHHHHHCC-CCCCCHHHHHHH
T ss_conf             999-------------------9726998600111113046516999824899528---89986378-886562367899


Q ss_pred             HHHH-------HHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC
Q ss_conf             9989-------7448661787862289802895357434031216
Q gi|254780623|r  275 LLHT-------LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL  312 (517)
Q Consensus       275 ~~qi-------~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l  312 (517)
                      ...+       ---|+.--|.-|-||+|.+||.|.+-||-..-+.
T Consensus       185 aAEvl~ALEYLHmlGivYRDLKPENILvredGHIMLsDFDLS~~~  229 (459)
T KOG0610         185 AAEVLLALEYLHMLGIVYRDLKPENILVREDGHIMLSDFDLSLRC  229 (459)
T ss_pred             HHHHHHHHHHHHHHCEEECCCCCCEEEEECCCCEEEEECCCCCCC
T ss_conf             999999999997516232147842268722784786403103447


No 315
>KOG0581 consensus
Probab=97.88  E-value=3e-05  Score=59.85  Aligned_cols=148  Identities=20%  Similarity=0.243  Sum_probs=92.4

Q ss_pred             HHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             867--666778888655550212888723687640310468877778899987532114685433469179999999887
Q gi|254780623|r  122 EFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT  199 (517)
Q Consensus       122 ~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  199 (517)
                      +++  .-|++++=|-|+++.-+.  +|+-.|.|+.+=+++.                                 ++.+++
T Consensus        80 dle~~~~lG~G~gG~V~kv~Hk~--t~~i~AlK~I~~~~~~---------------------------------~~~~Qi  124 (364)
T KOG0581          80 DLERLGVLGSGNGGTVYKVRHKP--TGKIYALKVILLNIDP---------------------------------ALQKQI  124 (364)
T ss_pred             HHHHHHHCCCCCCCEEEEEEECC--CCEEEEEEEEECCCCH---------------------------------HHHHHH
T ss_conf             75423112467873799999737--8858998876035788---------------------------------999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC---CCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             8886559999889872024467766430000102217---8335300247863242677332002256899999999999
Q gi|254780623|r  200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE---RDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLL  276 (517)
Q Consensus       200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st---~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~  276 (517)
                      .+|++..++.           ++|+|+  +-|..+-.   +--++|||+||-+++++-  +..|.-+......+..+.++
T Consensus       125 ~rEl~il~~~-----------~spyIV--~~ygaF~~~~~~isI~mEYMDgGSLd~~~--k~~g~i~E~~L~~ia~~VL~  189 (364)
T KOG0581         125 LRELEILRSC-----------QSPYIV--GFYGAFYSNGEEISICMEYMDGGSLDDIL--KRVGRIPEPVLGKIARAVLR  189 (364)
T ss_pred             HHHHHHHHCC-----------CCCCEE--EEEEEEEECCCEEEEEHHHCCCCCHHHHH--HHCCCCCHHHHHHHHHHHHH
T ss_conf             9999998607-----------998753--67789984795588636535798789998--76277878999999999998


Q ss_pred             H---HH-HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHH
Q ss_conf             8---97-4486617878622898028953574340312169899999
Q gi|254780623|r  277 H---TL-RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRF  319 (517)
Q Consensus       277 q---i~-~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~  319 (517)
                      -   +- +.+..|-|--|-||+|...|.+=+-|||.-|.|.......
T Consensus       190 GL~YLh~~~~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS~a~t  236 (364)
T KOG0581         190 GLSYLHEERKIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNSIANT  236 (364)
T ss_pred             HHHHHHHCCCEEECCCCHHHEEECCCCCEEECCCCCCHHHHHHHCCC
T ss_conf             89998654571005778878555379977853455337665111113


No 316
>cd05107 PTKc_PDGFR_beta Catalytic Domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=97.88  E-value=0.00012  Score=55.26  Aligned_cols=59  Identities=20%  Similarity=0.403  Sum_probs=39.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHEEC---CCCCCEEEEEEECCHHHHH----HHHHHHHHHHH
Q ss_conf             4788999999867666778888655550212---8887236876403104688----77778899987
Q gi|254780623|r  112 LKAPIEELYCEFDDPIAAASIAQVHPAVVHD---INGYRKVAVKIIRPGVRKR----FFRDIQVMYLI  172 (517)
Q Consensus       112 lg~~~~~~F~~fdePlasASiaQVh~A~l~d---~~~g~~VaVKV~rP~i~~~----i~~Dl~~l~~~  172 (517)
                      +--|.+++  .+.+-|++|.-|+||+|++++   +.+..+||||..+++-.+.    +..++.+|+.+
T Consensus        32 wEipr~~L--~lg~~LGeGaFG~V~kg~~~gl~~~~~~~~VAVK~LK~~a~~~e~~~fl~E~~iM~~l   97 (401)
T cd05107          32 WEMPRDNL--VLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHL   97 (401)
T ss_pred             CCCCHHHE--EEEEEEEECCCEEEEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             56778994--8830784238818999899067888823799998888889989999999999999853


No 317
>KOG0608 consensus
Probab=97.85  E-value=6.6e-05  Score=57.18  Aligned_cols=105  Identities=21%  Similarity=0.333  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHH---HHHHHHHHHH
Q ss_conf             999988987202446776643000010221783--35300247863242677332002256899999---9999998974
Q gi|254780623|r  206 RLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTL---VQSFLLHTLR  280 (517)
Q Consensus       206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l---~~~~~~qi~~  280 (517)
                      ++-+++.+.=|+.+++-+.=.|=+.|-.+--+.  -.||+||.|--+-.+  |-..|+=.+.||+-.   +.+-.+.+-.
T Consensus       670 rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFVMdYIPGGDmMSL--LIrmgIFeE~LARFYIAEltcAiesVHk  747 (1034)
T KOG0608         670 RNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMDYIPGGDMMSL--LIRMGIFEEDLARFYIAELTCAIESVHK  747 (1034)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEECCCCCCHHHH--HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             64465554566667523774268899875157725899841578408999--9884527898889999999899988875


Q ss_pred             CCEECCCCCCCEEEEECCCCEEEEECCHHEEC
Q ss_conf             48661787862289802895357434031216
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRL  312 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l  312 (517)
                      -||.|-|..|-||+|+.||.|-+-|||+|.-+
T Consensus       748 mGFIHRDiKPDNILIDrdGHIKLTDFGLCTGf  779 (1034)
T KOG0608         748 MGFIHRDIKPDNILIDRDGHIKLTDFGLCTGF  779 (1034)
T ss_pred             CCCEECCCCCCCEEECCCCCEEEEECCCCCCC
T ss_conf             04122256755467736784563002420253


No 318
>KOG0198 consensus
Probab=97.84  E-value=2.8e-05  Score=60.11  Aligned_cols=138  Identities=22%  Similarity=0.327  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +=++.+|-|.||.|..++  +|+..|||-.-=.                   .  .+.             .+++.+|+.
T Consensus        23 ~~lG~Gs~G~V~l~~~~~--~g~~~AvK~v~~~-------------------~--~~~-------------~~~l~~Ei~   66 (313)
T KOG0198          23 KLLGRGSFGSVYLATNKK--TGELMAVKSVELE-------------------D--SPT-------------SESLEREIR   66 (313)
T ss_pred             CCCCCCCCEEEEEEEECC--CCCCEEEEEEECC-------------------C--CHH-------------HHHHHHHHH
T ss_conf             610676656999999657--7752256543202-------------------4--446-------------788999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCC-CHHC-CCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH---
Q ss_conf             599998898720244677664300001-0221-78335300247863242677332002256899999999999897---
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKID-WNRT-ERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL---  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy-~~~s-t~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~---  279 (517)
                      ...      ++.     .+.|+--.-. .... ..--+.|||+.|-++.+.-  +..|-   .+-+..+..|.+|++   
T Consensus        67 iL~------~l~-----~p~IV~~~G~~~~~~~~~~~i~mEy~~~Gsl~~~~--~~~g~---~l~E~~v~~ytr~iL~GL  130 (313)
T KOG0198          67 ILS------RLN-----HPNIVQYYGSSSSRENDEYNIFMEYAPGGSLSDLI--KRYGG---KLPEPLVRRYTRQILEGL  130 (313)
T ss_pred             HHH------HCC-----CCCEEEECCCCCCCCCEEEEEEEECCCCCCHHHHH--HHCCC---CCCHHHHHHHHHHHHHHH
T ss_conf             998------479-----98788637855335670667665304799289999--87389---998799999999999999


Q ss_pred             ----HCCEECCCCCCCEEEEEC-CCCEEEEECCHHEECCH
Q ss_conf             ----448661787862289802-89535743403121698
Q gi|254780623|r  280 ----RDGFFHADLHPGNLFVDS-KGYIVAVDMGITGRLSK  314 (517)
Q Consensus       280 ----~~GfFHaDPHpGNi~v~~-dg~i~~lDfG~vg~l~~  314 (517)
                          ..||.|+|.-|.||++++ +|.+-+-|||+.+.+..
T Consensus       131 ~ylHs~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~  170 (313)
T KOG0198         131 AYLHSKGIVHCDIKPANILLDPSNGDVKLADFGLAKKLES  170 (313)
T ss_pred             HHHHHCCEECCCCCCCEEEEECCCCCEEECCCCCCCCCCC
T ss_conf             9997598750576513078807999079624862343155


No 319
>PRK06148 hypothetical protein; Provisional
Probab=97.83  E-value=0.0003  Score=52.11  Aligned_cols=195  Identities=15%  Similarity=0.168  Sum_probs=91.8

Q ss_pred             HHHCCCCCCHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHH-HHHHHHHH
Q ss_conf             874887899899999875404788--999999867666778888655550212888723687640310468-87777889
Q gi|254780623|r   92 LQDKMDFFPTNTARLSVASALKAP--IEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRK-RFFRDIQV  168 (517)
Q Consensus        92 Lqd~vpp~~~~~v~~~ie~elg~~--~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~-~i~~Dl~~  168 (517)
                      +.--.|.++.+++.+++++.+|-.  +.++-++.|         |=++....|   |++-|+||-+|+=.. .++.-..+
T Consensus         4 ~~~p~P~~s~~ea~~ll~~~yGi~g~l~~L~sE~D---------~NF~v~~~~---g~~yVLKI~n~~e~~~~le~Q~~a   71 (1015)
T PRK06148          4 LSHPAPEFTTKDAEALLAQHFGVSASLTPLDGERD---------LNFRLKTGN---GAGYILKIVNASEPRVESEFQTAL   71 (1015)
T ss_pred             CCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCC---------CCEEEECCC---CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             78995999999999999986798699976786355---------215897189---987999965887987799999999


Q ss_pred             HHHHHHHHC-----CCCCCCCCCCHHH------------H--------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             998753211-----4685433469179------------9--------99999887888655999988987202446776
Q gi|254780623|r  169 MYLIARIQE-----KLLPSMRRLCFSA------------V--------VRALEQVTKMEMDLRLEAAAFSEMAENTVKDQ  223 (517)
Q Consensus       169 l~~~~~~~~-----~~~~~~~~~~~~~------------~--------~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~  223 (517)
                      |+.++..-.     +..|+...-.+..            +        ..+...+-...-++-.-+..+.+-=+.|. .|
T Consensus        72 L~hL~~~~~~l~vP~vi~t~~G~~~~~~~~~~g~~~~vRLlt~l~G~~l~~~~~s~~l~~~LG~~lg~l~~AL~~F~-HP  150 (1015)
T PRK06148         72 LDHLAATAPALPVPHLKPSLSGASLASAEDPDGKPHALRLVSWLPGTPLAEAKRTKALLKNLGRALGELDRALQGFM-HP  150 (1015)
T ss_pred             HHHHHHCCCCCCCCEEEECCCCCEEEEEECCCCCEEEEEEEEEECCEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CC
T ss_conf             99998459999888255259998568998689988999989822887713489998999999999999999864898-86


Q ss_pred             CCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH------HHHCCEECCCCCCCEEEEEC
Q ss_conf             643000010221783353002478632426773320022568999999999998------97448661787862289802
Q gi|254780623|r  224 GFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH------TLRDGFFHADLHPGNLFVDS  297 (517)
Q Consensus       224 ~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q------i~~~GfFHaDPHpGNi~v~~  297 (517)
                      ... -.--|++..... +.++++-  +        .+.+++++.+..+..|-+.      -+..+..|.|++.=||+|++
T Consensus       151 ~~~-R~~~WDl~~a~~-~~~~L~~--i--------~d~~~r~ii~~~~~~f~~~v~P~l~~L~~qvIHnD~Nd~NIlV~~  218 (1015)
T PRK06148        151 GAL-RDFDWDLRHAGR-ARDRLHC--I--------DDPERRALIERFLARFERTVAPRLPALRAQVIHNDANDWNVLVDA  218 (1015)
T ss_pred             CCC-CCCCCCCCCHHH-HHHHHHH--C--------CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECC
T ss_conf             667-877738566499-9999875--4--------999999999999999999740545538612177888755477658


Q ss_pred             CC--C-EEEEECCHHEE
Q ss_conf             89--5-35743403121
Q gi|254780623|r  298 KG--Y-IVAVDMGITGR  311 (517)
Q Consensus       298 dg--~-i~~lDfG~vg~  311 (517)
                      ++  + .++||||=+..
T Consensus       219 ~~~~~v~GiIDFGD~~~  235 (1015)
T PRK06148        219 DDGERISGLIDFGDAVH  235 (1015)
T ss_pred             CCCCCEEEEEECCCCCC
T ss_conf             88876048997420012


No 320
>KOG1167 consensus
Probab=97.83  E-value=0.00018  Score=53.82  Aligned_cols=165  Identities=19%  Similarity=0.260  Sum_probs=98.5

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEC-CCCCCEEEEEEECC
Q ss_conf             04598899999998874887899899999875404788999999867666778888655550212-88872368764031
Q gi|254780623|r   78 PDLIGKKLSEDLALLQDKMDFFPTNTARLSVASALKAPIEELYCEFDDPIAAASIAQVHPAVVHD-INGYRKVAVKIIRP  156 (517)
Q Consensus        78 ~Dllp~~~~~eL~~Lqd~vpp~~~~~v~~~ie~elg~~~~~~F~~fdePlasASiaQVh~A~l~d-~~~g~~VaVKV~rP  156 (517)
                      .|+.+....+|..+|+...|                 .++..|... ++++.+|-+-|+.|++.. .+..+.||+|=.++
T Consensus        13 ~d~~~~~k~ee~~~l~q~~p-----------------~~~~~~~~v-~kigeGsFssv~~a~~~~~~~~~~~valk~i~~   74 (418)
T KOG1167          13 SDISAEDKGEEIEQLRQDIP-----------------FISNAYKVV-NKIGEGSFSSVYKATDIEQDTKRRYVALKAIYR   74 (418)
T ss_pred             HHCCHHHHHHHHHHHHHHHH-----------------HHHHHHHHH-CCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             10264432257788876656-----------------654444100-123522021556666763046551676453033


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCCCCCCCCCCHHCCCH
Q ss_conf             046887777889998753211468543346917999999988788865599998---89872024467766430000102
Q gi|254780623|r  157 GVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAA---AFSEMAENTVKDQGFRVPKIDWN  233 (517)
Q Consensus       157 ~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~---n~~~~~~~~~~~~~v~vP~vy~~  233 (517)
                      -....-                                    +..|+.+..++.   |.......+++.+.         
T Consensus        75 ts~p~r------------------------------------i~~El~~L~~~gG~~ni~~~~~~~rnnd~---------  109 (418)
T KOG1167          75 TSSPSR------------------------------------ILNELEMLYRLGGSDNIIKLNGCFRNNDQ---------  109 (418)
T ss_pred             CCCCHH------------------------------------HHHHHHHHHHHCCCHHHHCCHHHHCCCCE---------
T ss_conf             368238------------------------------------89999999985240020010333126881---------


Q ss_pred             HCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HHHHHHCCEECCCCCCCEEEEEC-CCCEEEEECCHHE
Q ss_conf             21783353002478632426773320022568999999999--99897448661787862289802-8953574340312
Q gi|254780623|r  234 RTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSF--LLHTLRDGFFHADLHPGNLFVDS-KGYIVAVDMGITG  310 (517)
Q Consensus       234 ~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~--~~qi~~~GfFHaDPHpGNi~v~~-dg~i~~lDfG~vg  310 (517)
                          .++||||.+-....++..    +.+...+-..+-..+  +..+-..|+.|-|--|||++..+ .++-+++|||..-
T Consensus       110 ----v~ivlp~~~H~~f~~l~~----~l~~~~i~~Yl~~ll~Al~~~h~~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~  181 (418)
T KOG1167         110 ----VAIVLPYFEHDRFRDLYR----SLSLAEIRWYLRNLLKALAHLHKNGIVHRDIKPSNFLYNRRTQRGVLVDFGLAQ  181 (418)
T ss_pred             ----EEEEECCCCCCCHHHHHH----CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHH
T ss_conf             ----379842667557999986----188889999999999986542006820167883311345245872687323677


Q ss_pred             ECC
Q ss_conf             169
Q gi|254780623|r  311 RLS  313 (517)
Q Consensus       311 ~l~  313 (517)
                      .-+
T Consensus       182 ~~d  184 (418)
T KOG1167         182 RYD  184 (418)
T ss_pred             HHH
T ss_conf             777


No 321
>pfam06293 Kdo Lipopolysaccharide kinase (Kdo/WaaP) family. These lipopolysaccharide kinases are related to protein kinases pfam00069. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of S. enterica.
Probab=97.81  E-value=0.00012  Score=55.22  Aligned_cols=121  Identities=19%  Similarity=0.182  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH------CCCCEEEEECCCC-CCCCHHHHHHH-HCCC-HHHHHHHHH
Q ss_conf             8865599998898720244677664300001022------1783353002478-63242677332-0022-568999999
Q gi|254780623|r  201 MEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR------TERDVITMEWIDG-VKISDTEKLRA-CGHD-LERLSVTLV  271 (517)
Q Consensus       201 ~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~------st~~VLvmE~i~G-~~i~d~~~l~~-~~~d-~~~la~~l~  271 (517)
                      .+.-..+|-.++.++.+     -+|-+|++.---      ..+-.|++|.++| .++.+.-.-.. .... ++.+.+. +
T Consensus        54 ~~~ra~rE~~~L~~L~~-----~Gipvp~pva~~~~~~~~~~~a~LITe~l~~~~~L~~~l~~~~~~~~~~~~~l~~~-v  127 (206)
T pfam06293        54 GRTRSFREFRLLRRLRE-----AGVPVPKPVAAGAVKVGGEYQADLLTERLEGAQDLVTWLAQWADPAEELRRALWRA-V  127 (206)
T ss_pred             CCCCHHHHHHHHHHHHH-----CCCCCCCEEEEEEECCCCCEEEEEEHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHH-H
T ss_conf             88699999999999998-----59998876689998368717998864135684209999861344453678999999-9


Q ss_pred             HHHHHHHHHCCEECCCCCCCEEEEECCC---CEEEEECCHHEECCH---HHHHHHHHHHHHH
Q ss_conf             9999989744866178786228980289---535743403121698---9999999766999
Q gi|254780623|r  272 QSFLLHTLRDGFFHADLHPGNLFVDSKG---YIVAVDMGITGRLSK---RERRFLAEILYGF  327 (517)
Q Consensus       272 ~~~~~qi~~~GfFHaDPHpGNi~v~~dg---~i~~lDfG~vg~l~~---~~r~~l~~l~~a~  327 (517)
                      ...+.++-..|++|+|+++.||++++++   ++.+|||-=+..-++   -....+..|..++
T Consensus       128 g~~i~~~H~~gi~H~DL~~~nIll~~~~~~~~~~LIDldr~~~r~~~~~~~~~dL~rL~rS~  189 (206)
T pfam06293       128 GRLIARMHRAGVNHTDLNAHNILLDTGEGGFKVWLIDFDKCRRRLRGDRWREKDLARLKRSF  189 (206)
T ss_pred             HHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             99999999876845899900089817998753999987667056887138898799999765


No 322
>PRK09550 mtnK methylthioribose kinase; Reviewed
Probab=97.79  E-value=8.3e-05  Score=56.41  Aligned_cols=64  Identities=23%  Similarity=0.474  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEE--CCHHEECCHHHHHHHHHHHHHHHCCCHH
Q ss_conf             999999999989744866178786228980289535743--4031216989999999766999718727
Q gi|254780623|r  267 SVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVD--MGITGRLSKRERRFLAEILYGFISRDYQ  333 (517)
Q Consensus       267 a~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lD--fG~vg~l~~~~r~~l~~l~~a~~~~D~~  333 (517)
                      +..+-.-|+..  -....|||.|+|+||++++ ..-.||  |+..|-+.=+.-..+++++.+...+++.
T Consensus       209 v~~Lk~~F~t~--~eaLlHGDLHtGSImv~~~-~tkVIDpEFaFyGP~GFDiG~~iaNlllay~s~~~~  274 (398)
T PRK09550        209 VARLKHKFLTK--AEALLHGDLHTGSIFVTED-ETKVIDPEFAFYGPIGFDIGQLIANLLLNYFSQPGH  274 (398)
T ss_pred             HHHHHHHHHCC--CHHHHCCCCCCCCEEEECC-CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999987330--2154357776785787078-417965201035874120999999999999606023


No 323
>KOG0582 consensus
Probab=97.77  E-value=0.00018  Score=53.73  Aligned_cols=236  Identities=20%  Similarity=0.227  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             76667788886555502128887236876403104688777788999875321146854334691799999998878886
Q gi|254780623|r  124 DDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM  203 (517)
Q Consensus       124 dePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El  203 (517)
                      .+-|+.+-=|+||+|+...  .++.||||+.  ++                  ++.-.            +     ..  
T Consensus        31 ~e~IG~G~sa~V~~A~c~p--~~e~VAIK~i--nL------------------Ekc~~------------~-----ld--   69 (516)
T KOG0582          31 QEVIGVGASAVVYLARCIP--TNEVVAIKII--NL------------------EKCNN------------D-----LD--   69 (516)
T ss_pred             EEEEECCCEEEEEEEEECC--CCCEEEEEEE--EH------------------HHHHH------------H-----HH--
T ss_conf             8997046305764434204--6877999995--06------------------65203------------6-----99--


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC-----CCEEEEECCCCCCCCHHHH-HHHHCCCHHHHHHHHHHHH--H
Q ss_conf             559999889872024467766430000102217-----8335300247863242677-3320022568999999999--9
Q gi|254780623|r  204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE-----RDVITMEWIDGVKISDTEK-LRACGHDLERLSVTLVQSF--L  275 (517)
Q Consensus       204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st-----~~VLvmE~i~G~~i~d~~~-l~~~~~d~~~la~~l~~~~--~  275 (517)
                      +.++|.+++..+..          |.|..-+|+     .=.+||-|+.|-+.-|+-. .-..|.+-..+|..+-+..  +
T Consensus        70 ~l~kE~~~msl~~H----------PNIv~~~~sFvv~~~LWvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL  139 (516)
T KOG0582          70 ALRKEVQTMSLIDH----------PNIVTYHCSFVVDSELWVVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKAL  139 (516)
T ss_pred             HHHHHHHHHHHCCC----------CCCCEEEEEEEECCEEEEEEHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf             99999987553379----------98320778898365668854333377289999997136534789999999999999


Q ss_pred             HHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf             98974486617878622898028953574340312169899999997669997187278999999841266778936899
Q gi|254780623|r  276 LHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFA  355 (517)
Q Consensus       276 ~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~  355 (517)
                      .=+-..|..|-|--+|||+++.||.+-+=|||....|-..--+.-.++ ..++..-+...-+.+.+-.      .=..|.
T Consensus       140 ~YLH~~G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G~R~~~rf-~tfvgtp~wmAPEvl~q~~------~GYdfK  212 (516)
T KOG0582         140 DYLHQNGHIHRDVKAGNILIDSDGTVKLADFGVSASLFDSGDRQVTRF-NTFVGTPCWMAPEVLMQQL------HGYDFK  212 (516)
T ss_pred             HHHHHCCCEECCCCCCCEEECCCCCEEECCCEEEEEECCCCCEEEEEE-CCCCCCCCCCCHHHHHHCC------CCCCCH
T ss_conf             999866933034554637986898689747414554101676026751-2324766445848764214------675511


Q ss_pred             HHHHHH----HHHCCC-CCHHHCCHHHHHHHHHHHHHHCC----CCCC-HHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             999985----210013-34333113568999997545279----7128-8899999999998849987688988
Q gi|254780623|r  356 QAIRAI----GEPIHG-QSSDVISMGKLLTMLFEITELFD----MMTR-PELVMLQKTMVVVEGVARMLNPEFN  419 (517)
Q Consensus       356 ~~i~~~----~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~----~~~P-~~~~ll~r~l~~lEG~~~~LdP~~d  419 (517)
                      .||-.+    ++-..| .|++++.--+++..-+  -...+    ..+| .+...+-|++-.+-+.|..=||+--
T Consensus       213 aDIwSfGITA~ELA~G~aPf~k~pPmkvLl~tL--qn~pp~~~t~~~~~d~~k~~~ksf~e~i~~CL~kDP~kR  284 (516)
T KOG0582         213 ADIWSFGITACELAHGHAPFSKYPPMKVLLLTL--QNDPPTLLTSGLDKDEDKKFSKSFREMIALCLVKDPSKR  284 (516)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH--CCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHCCCCCC
T ss_conf             166665578999851888843377288999982--489997433567867763314789999999850396559


No 324
>KOG0032 consensus
Probab=97.76  E-value=7.3e-05  Score=56.84  Aligned_cols=146  Identities=18%  Similarity=0.203  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-++.+.-|+||+|+-+.  +|+++|+|+........-.                                     ..-+
T Consensus        41 ~~lG~G~Fg~v~~~~~~~--tg~~~A~K~i~k~~~~~~~-------------------------------------~~~~   81 (382)
T KOG0032          41 RELGRGQFGVVYLCREKS--TGKEVACKVIPKRKLRGKE-------------------------------------DRED   81 (382)
T ss_pred             EEECCCCCEEEEEEEECC--CCCEEEEEEEECCCCCCCC-------------------------------------HHHH
T ss_conf             354689733789977668--9961589983032134631-------------------------------------1788


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHCCE
Q ss_conf             59999889872024467766430000102217833530024786324267733-20022568999999999998974486
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLR-ACGHDLERLSVTLVQSFLLHTLRDGF  283 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~-~~~~d~~~la~~l~~~~~~qi~~~Gf  283 (517)
                      ..+|.+.++++..   ...-|.++.+|.. .+.-.||||+++|-.+-|.-.-. -...+...++..++++ ++++...|.
T Consensus        82 v~~Ev~il~~l~~---hpniv~l~~~~e~-~~~~~lvmEL~~GGeLfd~i~~~~~sE~da~~~~~~il~a-v~~lH~~gv  156 (382)
T KOG0032          82 VRREVAILQQLSG---HPNIVQLKDAFED-PDSVYLVMELCEGGELFDRIVKKHYSERDAAGIIRQILEA-VKYLHSLGV  156 (382)
T ss_pred             HHHHHHHHHHCCC---CCCEEEEEEEEEC-CCEEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHCCE
T ss_conf             9999999986357---9978876137971-6601555430467258888987277689988888988999-999986796


Q ss_pred             ECCCCCCCEEEEEC----CCCEEEEECCHHEECCH
Q ss_conf             61787862289802----89535743403121698
Q gi|254780623|r  284 FHADLHPGNLFVDS----KGYIVAVDMGITGRLSK  314 (517)
Q Consensus       284 FHaDPHpGNi~v~~----dg~i~~lDfG~vg~l~~  314 (517)
                      .|-|.-|-|+++..    ++++.+.|||......+
T Consensus       157 vHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~  191 (382)
T KOG0032         157 VHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKP  191 (382)
T ss_pred             EECCCCHHHCEECCCCCCCCCEEEECCCCCCCCCC
T ss_conf             55147876701102546777566521687631688


No 325
>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members. The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista
Probab=97.73  E-value=0.00015  Score=54.32  Aligned_cols=181  Identities=18%  Similarity=0.180  Sum_probs=81.9

Q ss_pred             HHHHHHHHHEECCCCCCEEEEEE-ECCHHHHHHHHHHHHHHHHHHHHCCCCCCCC-------CCCHHHHH-HHHHHHHHH
Q ss_conf             88865555021288872368764-0310468877778899987532114685433-------46917999-999988788
Q gi|254780623|r  131 SIAQVHPAVVHDINGYRKVAVKI-IRPGVRKRFFRDIQVMYLIARIQEKLLPSMR-------RLCFSAVV-RALEQVTKM  201 (517)
Q Consensus       131 SiaQVh~A~l~d~~~g~~VaVKV-~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~-------~~~~~~~~-~e~~~~l~~  201 (517)
                      |-|..|..-.-    |++.|+.. +||+....++.+.+++..++.-+.--+|.-.       .|..+-.+ .-+.-....
T Consensus         7 ~~G~dN~~~rl----G~~~v~R~Prr~~~a~~l~~E~~~L~~La~~lpv~VP~pv~~g~p~~~yp~pw~v~~~l~G~~~~   82 (235)
T cd05155           7 SGGTDNATFRL----GDDMSVRLPSAAGYAGQVRKEQRWLPRLAPHLPLPVPEPLGKGEPGEGYPWPWSVYRWLEGETAT   82 (235)
T ss_pred             CCCCEEEEEEE----CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCEEEECCCCCCCC
T ss_conf             89840148996----88879975797015999999999999872438878898433289855689763445216887787


Q ss_pred             HHHHHHHHHHHHHHHCCCC---CCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHH-----HH-HC-CCHHHHHHHHH
Q ss_conf             8655999988987202446---776643000010221783353002478632426773-----32-00-22568999999
Q gi|254780623|r  202 EMDLRLEAAAFSEMAENTV---KDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKL-----RA-CG-HDLERLSVTLV  271 (517)
Q Consensus       202 ElD~~~Ea~n~~~~~~~~~---~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l-----~~-~~-~d~~~la~~l~  271 (517)
                      ..+...-......+++.++   ..+---.|...         ..++..|.++......     .. .+ .|. ..+..+.
T Consensus        83 ~~~~~~~~~~a~~La~~L~aLH~id~~~~~~~g---------~~~~~r~~~l~~~~~~~~~~~~~~~~~~d~-~~~~~~w  152 (235)
T cd05155          83 AAALSDPSEFAEDLADFLAALRQIDPSGGPPAG---------RHNFLRGGDLAVRDAETREAIEALEGVIDV-DAARALW  152 (235)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC---------CCCCCCCCCHHHHHHHHHHHHHHHCCCCCH-HHHHHHH
T ss_conf             467678799999999999997378965688667---------666444567899989999999873366477-9999999


Q ss_pred             HHHHHHH--HHCCEECCCCCCCEEEEECCCCE-EEEECCHHEECCHHHHHHHHHHHHHHHCCC
Q ss_conf             9999989--74486617878622898028953-574340312169899999997669997187
Q gi|254780623|r  272 QSFLLHT--LRDGFFHADLHPGNLFVDSKGYI-VAVDMGITGRLSKRERRFLAEILYGFISRD  331 (517)
Q Consensus       272 ~~~~~qi--~~~GfFHaDPHpGNi~v~~dg~i-~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D  331 (517)
                      +..+..-  ...-..|||.||||++|+ ||+| ++||||.++-=||..     ++..+-..-|
T Consensus       153 ~~al~~p~~~~~v~vHGDl~p~NvLv~-dgrlsgVIDwg~~~vGDPA~-----DLa~aw~~~~  209 (235)
T cd05155         153 EAALRAPWWGPPVWFHGDLAPGNLLVQ-DGRLSAVIDFGCLGVGDPAC-----DLAIAWTLLD  209 (235)
T ss_pred             HHHHHCCCCCCCEEEECCCCCCCEEEE-CCEEEEEEECCCCCCCCCHH-----HHHHHHHHCC
T ss_conf             999747576898877079888718988-99289998777776588189-----9999998479


No 326
>KOG1163 consensus
Probab=97.70  E-value=0.00018  Score=53.75  Aligned_cols=136  Identities=18%  Similarity=0.351  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      .+|+|+|.|-.|.|.--  ++|++|||||-+..+.                    .|.+                     
T Consensus        21 rkiGsGSFGdIy~~~~i--~~ge~VAiK~Es~~a~--------------------hpqL---------------------   57 (341)
T KOG1163          21 RKIGSGSFGDIYLGISI--TSGEEVAIKLESSKAK--------------------HPQL---------------------   57 (341)
T ss_pred             EEECCCCHHHHEEEEEC--CCCCEEEEEEECCCCC--------------------CCCC---------------------
T ss_conf             86168853231022102--6786699997125578--------------------8630---------------------


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHHHHHHHHH
Q ss_conf             599998898720244677664300001022178--3353002478632426773320022568---99999999999897
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQSFLLHTL  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~~~~~qi~  279 (517)
                       ..|++--..    +  ...+-||.+++-.+.+  +||||+-. |-++.|+-..-......+.   +|+.++.- ++-+-
T Consensus        58 -~yEskvY~i----L--~~g~GiP~i~~y~~e~~ynvlVMdLL-GPsLEdLfnfC~R~ftmkTvLMLaDQml~R-iEyvH  128 (341)
T KOG1163          58 -LYESKVYRI----L--QGGVGIPHIRHYGTEKDYNVLVMDLL-GPSLEDLFNFCSRRFTMKTVLMLADQMLSR-IEYVH  128 (341)
T ss_pred             -HHHHHHHHH----H--CCCCCCCHHHHHCCCCCCCEEEEHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_conf             -678999998----6--26899831211134455555541021-853999999875301478699999999999-99998


Q ss_pred             HCCEECCCCCCCEEEEE---CCCCEEEEECCHHEEC
Q ss_conf             44866178786228980---2895357434031216
Q gi|254780623|r  280 RDGFFHADLHPGNLFVD---SKGYIVAVDMGITGRL  312 (517)
Q Consensus       280 ~~GfFHaDPHpGNi~v~---~dg~i~~lDfG~vg~l  312 (517)
                      ..+|.|-|--|-|++.-   ...++.+||||...+.
T Consensus       129 ~r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky  164 (341)
T KOG1163         129 LRNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKY  164 (341)
T ss_pred             HHCCCCCCCCCCCEEECCCCCCCEEEEEECCCHHHH
T ss_conf             724100567842002312224554899962412332


No 327
>KOG3087 consensus
Probab=97.69  E-value=0.00024  Score=52.90  Aligned_cols=98  Identities=23%  Similarity=0.375  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCC-CHHH--HHHHHCCCH--HHHHHHHHHHHHHHHHH
Q ss_conf             999988987202446776643000010221783353002478632-4267--733200225--68999999999998974
Q gi|254780623|r  206 RLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKI-SDTE--KLRACGHDL--ERLSVTLVQSFLLHTLR  280 (517)
Q Consensus       206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i-~d~~--~l~~~~~d~--~~la~~l~~~~~~qi~~  280 (517)
                      .+||+-+.+.+..     .+.+|.+|.-=...+-|.|||++|-+- .+.-  .+.....|.  ..+++++-+..- -+-.
T Consensus        58 ~~Ear~l~k~~~~-----GI~~P~l~~~D~~~~~i~ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~ig-klH~  131 (229)
T KOG3087          58 KQEARLLAKCRAL-----GIPAPRLIFIDTYGGQIYMEFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIG-KLHD  131 (229)
T ss_pred             HHHHHHHHHHHHH-----CCCCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH-HHHH
T ss_conf             9999998889982-----888754898726798689995154047999999970675422668999999999998-7632


Q ss_pred             CCEECCCCCCCEEEEECCC-CE--EEEECCHH
Q ss_conf             4866178786228980289-53--57434031
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKG-YI--VAVDMGIT  309 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg-~i--~~lDfG~v  309 (517)
                      .+..|||.--.||++.++| ++  .+||||.-
T Consensus       132 ndiiHGDLTTSNill~~~~~~~~~~lIdfgls  163 (229)
T KOG3087         132 NDIIHGDLTTSNILLRSDGNQITPILIDFGLS  163 (229)
T ss_pred             CCEECCCCCCCCEEEECCCCCCCEEEEEECCH
T ss_conf             78112554513168836988675488860410


No 328
>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported 
Probab=97.68  E-value=8e-05  Score=56.53  Aligned_cols=64  Identities=20%  Similarity=0.209  Sum_probs=47.8

Q ss_pred             HHCCEECCCCCCCEEEEECCCCE-EEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf             74486617878622898028953-5743403121698999999976699971872789999998412
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYI-VAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGY  344 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i-~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~  344 (517)
                      +.-++.|||.|||||+|+++|++ ++||||.++.=||..  -|+-++..+...-.+.+.+++.+.|-
T Consensus       183 ~~~~lvHGDL~~~hiLvd~~~rvtGVIDW~da~VGDPA~--Dfa~l~~~~g~~~l~~~l~~Y~~agg  247 (276)
T cd05152         183 RHTVLVHGDLHPGHILIDEDARVTGLIDWTEAKVGDPAR--DFVLHYRIFGEAGLERLIDAYEAAGG  247 (276)
T ss_pred             CCCEEEECCCCCCCEEECCCCCEEEEECCCCCCCCCHHH--HHHHHHHHCCHHHHHHHHHHHHHCCC
T ss_conf             886346357557707984898589984430147788489--99999987288999999999997589


No 329
>cd05105 PTKc_PDGFR_alpha Catalytic Domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=97.67  E-value=0.00062  Score=49.67  Aligned_cols=51  Identities=18%  Similarity=0.311  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHEECCCCC---CEEEEEEECCHHHHHHHH----HHHHHHHH
Q ss_conf             8676667788886555502128887---236876403104688777----78899987
Q gi|254780623|r  122 EFDDPIAAASIAQVHPAVVHDINGY---RKVAVKIIRPGVRKRFFR----DIQVMYLI  172 (517)
Q Consensus       122 ~fdePlasASiaQVh~A~l~d~~~g---~~VaVKV~rP~i~~~i~~----Dl~~l~~~  172 (517)
                      .+.+.|++|..|.||+|+++.-..+   .+||||..+++..+.-..    .+.+|+.+
T Consensus        40 ~l~~~LGeGaFG~V~kg~a~~l~~~~~~~~VAVK~LK~~a~~~e~~~fl~E~~iM~~l   97 (400)
T cd05105          40 VLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHL   97 (400)
T ss_pred             EEEEEEEEECCCEEEEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             8842785426818999899378888854489998678778989999999999999742


No 330
>KOG0659 consensus
Probab=97.61  E-value=0.00017  Score=54.08  Aligned_cols=186  Identities=20%  Similarity=0.288  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-++-+.-|-||+|+=.  .+|+.||||=.+.|                    .. .           +.+..+..+|+-
T Consensus         8 ~~lGEG~~gvVyka~d~--~t~~~VAIKKIkl~--------------------~~-k-----------dGi~~talREIK   53 (318)
T KOG0659           8 EKLGEGTYGVVYKARDT--ETGKRVAIKKIKLG--------------------NA-K-----------DGINRTALREIK   53 (318)
T ss_pred             HHHCCCCEEEEEEEEEC--CCCCEEEEEEEECC--------------------CC-C-----------CCCCHHHHHHHH
T ss_conf             65067623899998864--77858999986135--------------------32-3-----------573178999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----
Q ss_conf             599998898720244677664300001022178335300247863242677332002256899999999999897-----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL-----  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~-----  279 (517)
                      +.+|.++          ..-|..=.+|+..++ =.||.||++    +|++..-..  .-.-++..=+++|+.|++     
T Consensus        54 ~Lqel~h----------~nIi~LiD~F~~~~~-l~lVfEfm~----tdLe~vIkd--~~i~l~pa~iK~y~~m~LkGl~y  116 (318)
T KOG0659          54 LLQELKH----------PNIIELIDVFPHKSN-LSLVFEFMP----TDLEVVIKD--KNIILSPADIKSYMLMTLKGLAY  116 (318)
T ss_pred             HHHHCCC----------CCHHHHHHHCCCCCC-EEEEEEECC----CCHHHHHCC--CCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             9987068----------204335544157886-079987235----329988512--44446889999999999988999


Q ss_pred             --HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHH----------HHHHHHHCC----CHHH----HHHHH
Q ss_conf             --448661787862289802895357434031216989999999----------766999718----7278----99999
Q gi|254780623|r  280 --RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLA----------EILYGFISR----DYQR----VADVH  339 (517)
Q Consensus       280 --~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~----------~l~~a~~~~----D~~~----~~~~l  339 (517)
                        .....|-|.-|-|++++++|.+-+-|||......+..+....          +++.+.-..    |...    +++.+
T Consensus       117 ~H~~~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELl  196 (318)
T KOG0659         117 CHSKWILHRDLKPNNLLISSDGQLKIADFGLARFFGSPNRIQTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELL  196 (318)
T ss_pred             HHHHHHHCCCCCCCCEEECCCCCEEEECCCCHHCCCCCCCCCCCCEEEEECCCHHHHCCCHHCCCCCHHHHHHHHHHHHH
T ss_conf             98521001357700067768886875002420003787756301001221138677525300178623366889999998


Q ss_pred             HHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             9841266778936899999985
Q gi|254780623|r  340 FEAGYVPRHHNRFSFAQAIRAI  361 (517)
Q Consensus       340 ~~lg~~~~~~d~~~~~~~i~~~  361 (517)
                      +..-+.+.+.|.+++..-.+.+
T Consensus       197 lr~P~fpG~sDidQL~~If~~L  218 (318)
T KOG0659         197 LRVPFFPGDSDIDQLSKIFRAL  218 (318)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHC
T ss_conf             0698889976299999999972


No 331
>KOG4236 consensus
Probab=97.60  E-value=0.00018  Score=53.87  Aligned_cols=157  Identities=21%  Similarity=0.313  Sum_probs=101.0

Q ss_pred             HHHHHHCCCCHHHHHHHHH-HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9875404788999999867-666778888655550212888723687640310468877778899987532114685433
Q gi|254780623|r  106 LSVASALKAPIEELYCEFD-DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMR  184 (517)
Q Consensus       106 ~~ie~elg~~~~~~F~~fd-ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~  184 (517)
                      ..++++.  .+..++.-|. |-++|+-.|-||-|+-+.  +|++|||||.--                   + + +|.. 
T Consensus       552 ~qiqe~v--d~stvYQif~devLGSGQFG~VYgg~hRk--tGrdVAvKvIdK-------------------l-r-Fp~k-  605 (888)
T KOG4236         552 CQIQENV--DISTVYQIFADEVLGSGQFGTVYGGKHRK--TGRDVAVKVIDK-------------------L-R-FPTK-  605 (888)
T ss_pred             HHHHHHH--HHHHHHHHHHHHHCCCCCCEEEECCEECC--CCCEEEEEEEEC-------------------C-C-CCCC-
T ss_conf             3455423--17889876047511677522465221034--686134665101-------------------2-3-7874-


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCE-EEEECCCCCCCCHHHHHHHHCCCH
Q ss_conf             4691799999998878886559999889872024467766430000102217833-530024786324267733200225
Q gi|254780623|r  185 RLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDV-ITMEWIDGVKISDTEKLRACGHDL  263 (517)
Q Consensus       185 ~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~V-LvmE~i~G~~i~d~~~l~~~~~d~  263 (517)
                                      +|--+++|.+-++...     .|.|+.=.---| +.++| .|||-+.|--+.=+-.-     +.
T Consensus       606 ----------------qesqlR~EVaILq~l~-----HPGiV~le~M~E-T~ervFVVMEKl~GDMLEMILSs-----Ek  658 (888)
T KOG4236         606 ----------------QESQLRNEVAILQNLH-----HPGIVNLECMFE-TPERVFVVMEKLHGDMLEMILSS-----EK  658 (888)
T ss_pred             ----------------HHHHHHHHHHHHHHCC-----CCCEEEEEEEEC-CCCEEEEEEHHHCCHHHHHHHHH-----HC
T ss_conf             ----------------1788888999997447-----987567887503-77648998034054199998875-----40


Q ss_pred             HHHHHHHHHHHHHHHH-------HCCEECCCCCCCEEEEEC---CCCEEEEECCHHEECCHH
Q ss_conf             6899999999999897-------448661787862289802---895357434031216989
Q gi|254780623|r  264 ERLSVTLVQSFLLHTL-------RDGFFHADLHPGNLFVDS---KGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       264 ~~la~~l~~~~~~qi~-------~~GfFHaDPHpGNi~v~~---dg~i~~lDfG~vg~l~~~  315 (517)
                      -++-++..++.+.||+       ..|..|+|..|-|+++..   =.++-+-|||....+.+.
T Consensus       659 gRL~er~TkFlvtQIL~ALr~LH~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEk  720 (888)
T KOG4236         659 GRLPERITKFLVTQILVALRYLHFKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEK  720 (888)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHEEECCCCCCCCEEECCCCCEEECCHH
T ss_conf             56337889999999999998765356521157702244225799874134045400231423


No 332
>KOG0597 consensus
Probab=97.58  E-value=0.00071  Score=49.20  Aligned_cols=223  Identities=16%  Similarity=0.177  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      |-|+-+|-|.||+|+-++  +++-||+|+.---  .+-+.|++                              .+.+|++
T Consensus         8 e~iG~Gsfg~VYKgrrK~--t~~~vAik~i~K~--gr~~k~l~------------------------------~l~~ev~   53 (808)
T KOG0597           8 EMIGEGSFGRVYKGRRKY--TIQVVAIKFIDKS--GRNEKELK------------------------------NLRQEVR   53 (808)
T ss_pred             HHHCCCCCCEEEECCCCC--CEEEEEEEEEHHC--CCCHHHHH------------------------------HHHHHHH
T ss_conf             885477530366222326--4028999975201--78647789------------------------------9999999


Q ss_pred             HHHHHH--HHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHH-HHHHHHCCC-HHHHHHHHHHHHHHHHHH
Q ss_conf             599998--8987202446776643000010221783353002478632426-773320022-568999999999998974
Q gi|254780623|r  205 LRLEAA--AFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDT-EKLRACGHD-LERLSVTLVQSFLLHTLR  280 (517)
Q Consensus       205 ~~~Ea~--n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~-~~l~~~~~d-~~~la~~l~~~~~~qi~~  280 (517)
                      ..++.+  |.-.|.+-|.             -++.=++|.||..| .+-.+ +.-.+.+.+ -..+|..++.+.. -+-.
T Consensus        54 i~r~lkHpniv~m~esfE-------------t~~~~~vVte~a~g-~L~~il~~d~~lpEe~v~~~a~~LVsaL~-yLhs  118 (808)
T KOG0597          54 ILRSLKHPNIVEMLESFE-------------TSAHLWVVTEYAVG-DLFTILEQDGKLPEEQVRAIAYDLVSALY-YLHS  118 (808)
T ss_pred             HHHHCCCCCHHHHHHHHC-------------CCCEEEEEEHHHHH-HHHHHHHHCCCCCHHHHHHHHHHHHHHHH-HHHH
T ss_conf             998617961455887652-------------66627998334331-59999976068977999999999999999-9985


Q ss_pred             CCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             48661787862289802895357434031216989999999766999718727899999984126677893689999998
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRA  360 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i~~  360 (517)
                      .+..|.|.-|-||++...|.+-|-|||...-++.+.      .+..-+.+-.--++--+++-+......|.=.+---   
T Consensus       119 ~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~t------~vltsikGtPlYmAPElv~e~pyd~~sDlWslGci---  189 (808)
T KOG0597         119 NRILHRDMKPQNILLEKGGTLKLCDFGLARAMSTNT------SVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCI---  189 (808)
T ss_pred             CCCCCCCCCCCEEEECCCCCEEECHHHHHHHCCCCC------EEEEECCCCCCCCCHHHHCCCCCCCHHHHHHHHHH---
T ss_conf             472435687200441478733322024554303572------35530258604237888747986312557888889---


Q ss_pred             HHHHCCCCC-HHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf             521001334-333113568999997545279712888999999999
Q gi|254780623|r  361 IGEPIHGQS-SDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMV  405 (517)
Q Consensus       361 ~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~P~~~~ll~r~l~  405 (517)
                      +.+-|.|+| +-.-++.++...+..---+.+....++|.-+...++
T Consensus       190 lYE~~~G~PPF~a~si~~Lv~~I~~d~v~~p~~~S~~f~nfl~gLL  235 (808)
T KOG0597         190 LYELYVGQPPFYARSITQLVKSILKDPVKPPSTASSSFVNFLQGLL  235 (808)
T ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             9998628997168789999999844899996200489999999985


No 333
>KOG1166 consensus
Probab=97.53  E-value=0.00011  Score=55.63  Aligned_cols=179  Identities=16%  Similarity=0.231  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             76667788886555502128887236876403104688777788999875321146854334691799999998878886
Q gi|254780623|r  124 DDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM  203 (517)
Q Consensus       124 dePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El  203 (517)
                      +.=++-+|-|+||+|+-.+   |+.||+||++|-..=-+=--+.++.++-       |.                     
T Consensus       703 ~~e~G~g~y~~vy~a~~~~---~~~~alK~e~P~~~WEfYI~~q~~~RLk-------~~---------------------  751 (974)
T KOG1166         703 SKEIGEGSYGSVYVATHSN---GKLVALKVEKPPNPWEFYICLQVMERLK-------PQ---------------------  751 (974)
T ss_pred             EEEECCCCCEEEEEEECCC---CCEEEEEEECCCCCEEEEEHHHHHHHHC-------HH---------------------
T ss_conf             7540454534799864378---7379998506998545440589997603-------55---------------------


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHH-----HHHHHHHHHHHHH
Q ss_conf             55999988987202446776643000010221783353002478632426773320022568-----9999999999989
Q gi|254780623|r  204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLER-----LSVTLVQSFLLHT  278 (517)
Q Consensus       204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~-----la~~l~~~~~~qi  278 (517)
                                 +-.   ..-.|.--.+   |.+..+||+||.+=-++=|+..   ..-++..     ++-.++ -.++++
T Consensus       752 -----------~~~---~~~~~~~a~~---~~~~S~lv~ey~~~Gtlld~~N---~~~~m~e~lv~~~~~qml-~ive~l  810 (974)
T KOG1166         752 -----------MLP---SIMHISSAHV---FQNASVLVSEYSPYGTLLDLIN---TNKVMDEYLVMFFSCQML-RIVEHL  810 (974)
T ss_pred             -----------HHC---CHHHHHHHHC---CCCCCEEEEECCCCCCHHHHHC---CCCCCCCHHHHHHHHHHH-HHHHHH
T ss_conf             -----------421---1677888870---3776566330235411887644---577898100257799999-999998


Q ss_pred             HHCCEECCCCCCCEEEEECC-------CCEEEEECCHHEE---CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
Q ss_conf             74486617878622898028-------9535743403121---6989999999766999718727899999984126677
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSK-------GYIVAVDMGITGR---LSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRH  348 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~d-------g~i~~lDfG~vg~---l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~  348 (517)
                      -..|..|||.-|-|++++..       --|.+||||.---   +++.      .-|.+...-|.-.|.+....=.+ +-.
T Consensus       811 H~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siDm~lfp~~------~~F~~~~~td~f~C~EM~~grpW-tYq  883 (974)
T KOG1166         811 HAMGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSIDMKLFPDG------TKFKAVWHTDLFDCIEMREGRPW-TYQ  883 (974)
T ss_pred             HHCCEECCCCCCCEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCC------CEEEEEECCCCCHHHHHHCCCCC-CHH
T ss_conf             75163104678651475146678886654699962640223676888------67766633531003888669997-324


Q ss_pred             CCHHHHHHHHHHH
Q ss_conf             8936899999985
Q gi|254780623|r  349 HNRFSFAQAIRAI  361 (517)
Q Consensus       349 ~d~~~~~~~i~~~  361 (517)
                      +|.-.+..-+..+
T Consensus       884 ~DyfGlAa~~h~m  896 (974)
T KOG1166         884 IDYFGLAATVHVM  896 (974)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             5467899999999


No 334
>KOG0577 consensus
Probab=97.52  E-value=0.00031  Score=51.99  Aligned_cols=180  Identities=17%  Similarity=0.169  Sum_probs=106.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf             47889999998676667788886555502128887236876403104688777788999875321146854334691799
Q gi|254780623|r  112 LKAPIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAV  191 (517)
Q Consensus       112 lg~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~  191 (517)
                      +..+++++|...- -|+-||.|-||.|+-.-  +.+-||||-.                       .|.+.        -
T Consensus        20 ~k~DPEklf~dLr-EIGHGSFGAVYfArd~~--n~evVAIKKM-----------------------sySGK--------Q   65 (948)
T KOG0577          20 FKDDPEKLFSDLR-EIGHGSFGAVYFARDVR--NSEVVAIKKM-----------------------SYSGK--------Q   65 (948)
T ss_pred             CCCCHHHHHHHHH-HHCCCCCCEEEEEECCC--CCCEEEEEEC-----------------------CCCCC--------C
T ss_conf             2489899988899-84478643267754157--5503444112-----------------------55552--------2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHH-
Q ss_conf             9999988788865599998898720244677664300001022178335300247863242677332002256899999-
Q gi|254780623|r  192 VRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTL-  270 (517)
Q Consensus       192 ~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l-  270 (517)
                      -.|=+..|.+|+-|.+-.++-     |.-+.+..     |-. -+.-.|||||+-| +-+|+-..+.-+..--.+|..- 
T Consensus        66 s~EKWqDIlKEVrFL~~l~HP-----ntieYkgC-----yLr-e~TaWLVMEYClG-SAsDlleVhkKplqEvEIAAi~~  133 (948)
T KOG0577          66 SNEKWQDILKEVRFLRQLRHP-----NTIEYKGC-----YLR-EHTAWLVMEYCLG-SASDLLEVHKKPLQEVEIAAITH  133 (948)
T ss_pred             CHHHHHHHHHHHHHHHHCCCC-----CCCCCCCE-----EEC-CCHHHHHHHHHHC-CHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             078999999999999961598-----72120211-----231-2048899998714-47889999755512789999998


Q ss_pred             -HHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHH------HHHHHHHHHHCCCHHHHHH
Q ss_conf             -999999897448661787862289802895357434031216989999------9997669997187278999
Q gi|254780623|r  271 -VQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERR------FLAEILYGFISRDYQRVAD  337 (517)
Q Consensus       271 -~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~------~l~~l~~a~~~~D~~~~~~  337 (517)
                       +-.-+.-+--++-+|-|--+|||++++.|-+-+-|||...-.+|..--      .--++++|+-.+.|++-++
T Consensus       134 gaL~gLaYLHS~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~PAnsFvGTPywMAPEVILAMDEGqYdgkvD  207 (948)
T KOG0577         134 GALQGLAYLHSHNRIHRDIKAGNILLSEPGLVKLADFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVD  207 (948)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEECCCCCHHHCCCHHCCCCCCCCCCHHHHEECCCCCCCCCCC
T ss_conf             88889999987547763111363674377725522355145418212035884311536740013556477411


No 335
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=97.49  E-value=0.0016  Score=46.53  Aligned_cols=96  Identities=18%  Similarity=0.231  Sum_probs=67.5

Q ss_pred             CCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH-------HCCEECCCCC
Q ss_conf             46776643000010221783--35300247863242677332002256899999999999897-------4486617878
Q gi|254780623|r  219 TVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL-------RDGFFHADLH  289 (517)
Q Consensus       219 ~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~-------~~GfFHaDPH  289 (517)
                      +++-+.+-|=+-|.++-+++  .+||||.+|--+...  ++....+....-+.-+..+|.|+.       ..+..|-|.-
T Consensus       119 La~cdH~~IIK~~e~Fq~~d~L~iVMEYa~gGDL~~~--Ik~r~~~~~pF~E~ea~~~F~QI~lAL~ylH~~~IlHRDLK  196 (478)
T PTZ00267        119 LAACDHFGIVKHFDDFKSDDKLLLIMEYGSGGDLNKQ--IKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRKMMHRDLK  196 (478)
T ss_pred             HHCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCHHHH--HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             8718973210212555358758999983577748999--99877537886679999999999999999975793316576


Q ss_pred             CCEEEEECCCCEEEEECCHHEECCHHH
Q ss_conf             622898028953574340312169899
Q gi|254780623|r  290 PGNLFVDSKGYIVAVDMGITGRLSKRE  316 (517)
Q Consensus       290 pGNi~v~~dg~i~~lDfG~vg~l~~~~  316 (517)
                      |-|||++.+|.+=+-|||+...++...
T Consensus       197 ~~NIfL~~~G~IKLGDFGiSK~l~~t~  223 (478)
T PTZ00267        197 SANIFLMPTGIIKLGDFGFSKQYSDSV  223 (478)
T ss_pred             HHHEEECCCCCEEECCCCCCEECCCCC
T ss_conf             888567689988873563322237666


No 336
>KOG1164 consensus
Probab=97.49  E-value=0.00071  Score=49.21  Aligned_cols=138  Identities=19%  Similarity=0.271  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHH---HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             666778888655550212888723687640310468---87777889998753211468543346917999999988788
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRK---RFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKM  201 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~---~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~  201 (517)
                      ..+++++.||||.+.-.... .+.+|+|+-......   .+..+..++..+                             
T Consensus        24 ~~iG~G~fG~V~~v~~~~~~-~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l-----------------------------   73 (322)
T KOG1164          24 KKIGEGGFGAVYLVSDKSEK-NKEYAKKLEKKELGSKPSVLKIEIQVLKKL-----------------------------   73 (322)
T ss_pred             EEECCCCCEEEEEEEECCCC-CEEEEEEEEEECCCCCCCCCHHHHHHHHHH-----------------------------
T ss_conf             77179998389999965888-676899998631567764210599999987-----------------------------


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH-CCC--CEEEEECCCCCCCCHHHHHHH-HCCCHHHHHHHHHHHH--H
Q ss_conf             865599998898720244677664300001022-178--335300247863242677332-0022568999999999--9
Q gi|254780623|r  202 EMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR-TER--DVITMEWIDGVKISDTEKLRA-CGHDLERLSVTLVQSF--L  275 (517)
Q Consensus       202 ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~-st~--~VLvmE~i~G~~i~d~~~l~~-~~~d~~~la~~l~~~~--~  275 (517)
                                    ..   ....-++|.+++.. .+.  +.+||+.+ |.++.|+-.... ................  +
T Consensus        74 --------------~~---~~~~~~~~~~~~~G~~~~~~~~iVM~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l  135 (322)
T KOG1164          74 --------------EK---KNGPSHFPKLLDHGRSTEDFNFIVMSLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNAL  135 (322)
T ss_pred             --------------HH---CCCCCCCCEEEECCCCCCCCCEEEEECC-CCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             --------------41---4577898857744655786488999615-88999999757778878303999999999999


Q ss_pred             HHHHHCCEECCCCCCCEEEEECCC-----CEEEEECCHHE
Q ss_conf             989744866178786228980289-----53574340312
Q gi|254780623|r  276 LHTLRDGFFHADLHPGNLFVDSKG-----YIVAVDMGITG  310 (517)
Q Consensus       276 ~qi~~~GfFHaDPHpGNi~v~~dg-----~i~~lDfG~vg  310 (517)
                      +.+-..||+|.|-+|+|+.+...+     .+.++|||+..
T Consensus       136 ~~lH~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar  175 (322)
T KOG1164         136 EDLHSKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLAR  175 (322)
T ss_pred             HHHHHCCEECCCCCHHHEEECCCCCCCCCEEEEEECCCCC
T ss_conf             9998488343668767646225676655458897211451


No 337
>KOG0603 consensus
Probab=97.48  E-value=0.00032  Score=51.85  Aligned_cols=77  Identities=22%  Similarity=0.333  Sum_probs=54.1

Q ss_pred             CEEEEECCCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEE-ECCCCEEEEECCHHEECCHH
Q ss_conf             33530024786324267733200-22568999999999998974486617878622898-02895357434031216989
Q gi|254780623|r  238 DVITMEWIDGVKISDTEKLRACG-HDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFV-DSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       238 ~VLvmE~i~G~~i~d~~~l~~~~-~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v-~~dg~i~~lDfG~vg~l~~~  315 (517)
                      --+|||.++|--+-+.-.-+... .....++..++.++. -+-..|++|.|.|||||++ ..+|.|=+.|||--..+.+.
T Consensus       391 ~~~v~e~l~g~ell~ri~~~~~~~~e~~~w~~~lv~Av~-~LH~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~  469 (612)
T KOG0603         391 IYLVMELLDGGELLRRIRSKPEFCSEASQWAAELVSAVD-YLHEQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERS  469 (612)
T ss_pred             EEEEEHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHH-HHHHCCEEECCCCHHHEEECCCCCCEEEEEECHHHHCCHH
T ss_conf             466531303407889887151137899999999999999-9974686535788332663279885799972003207644


No 338
>KOG0575 consensus
Probab=97.48  E-value=7.1e-05  Score=56.94  Aligned_cols=134  Identities=20%  Similarity=0.268  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHHEECCCCCCEEEEEEEC------CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             667788886555502128887236876403------10468877778899987532114685433469179999999887
Q gi|254780623|r  126 PIAAASIAQVHPAVVHDINGYRKVAVKIIR------PGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT  199 (517)
Q Consensus       126 PlasASiaQVh~A~l~d~~~g~~VaVKV~r------P~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  199 (517)
                      =|+-|.-|+||+|+-.+  +|+.||+||..      |+.++.+..++.+-+.+.                          
T Consensus        25 ~LGkGgFA~cYe~~~~~--tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~--------------------------   76 (592)
T KOG0575          25 FLGKGGFARCYEARDLD--TGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLK--------------------------   76 (592)
T ss_pred             EECCCCCEEEEEEEECC--CCCEEEEEEEEHHHHCCCCHHHHHHHHHHHHHHCC--------------------------
T ss_conf             45467665889978747--78678899842677327206789998999987058--------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             88865599998898720244677664300001022178335300247863242677332002256899999999999897
Q gi|254780623|r  200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL  279 (517)
Q Consensus       200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~  279 (517)
                               -.|.-+|...|.++..|++   ..|+|..+- .||+..               .++.+-+.=++.|++||.
T Consensus        77 ---------HpnIV~f~~~FEDs~nVYi---vLELC~~~s-L~el~K---------------rrk~ltEpEary~l~QIv  128 (592)
T KOG0575          77 ---------HPNIVQFYHFFEDSNNVYI---VLELCHRGS-LMELLK---------------RRKPLTEPEARYFLRQIV  128 (592)
T ss_pred             ---------CCCEEEEEEEEECCCCEEE---EEEECCCCC-HHHHHH---------------HCCCCCCHHHHHHHHHHH
T ss_conf             ---------9857766667525880699---987268760-999997---------------457778499999999999


Q ss_pred             -------HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             -------448661787862289802895357434031216989
Q gi|254780623|r  280 -------RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       280 -------~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                             ..|..|=|.--||||++.+-.+=+=|||....+.+.
T Consensus       129 ~GlkYLH~~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~  171 (592)
T KOG0575         129 EGLKYLHSLGIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYD  171 (592)
T ss_pred             HHHHHHHHCCCEECCCCHHHEEECCCCCEEECCCCEEEEECCC
T ss_conf             9999988657032244221201357675776254014561576


No 339
>KOG0612 consensus
Probab=97.42  E-value=0.0011  Score=47.86  Aligned_cols=68  Identities=25%  Similarity=0.453  Sum_probs=49.7

Q ss_pred             EEEEECCCCCCCCHHHHH-HHHCCCHHHHHHHHHHHHHH-------HHHHCCEECCCCCCCEEEEECCCCEEEEECCHHE
Q ss_conf             353002478632426773-32002256899999999999-------8974486617878622898028953574340312
Q gi|254780623|r  239 VITMEWIDGVKISDTEKL-RACGHDLERLSVTLVQSFLL-------HTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITG  310 (517)
Q Consensus       239 VLvmE~i~G~~i~d~~~l-~~~~~d~~~la~~l~~~~~~-------qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg  310 (517)
                      -+||||+.|-   |+-.| ...  +  .+-+..+++|..       .+-.-||.|-|--|-|++++..|.|=+-|||.|-
T Consensus       151 YlVMdY~pGG---DlltLlSk~--~--~~pE~~ArFY~aEiVlAldslH~mgyVHRDiKPDNvLld~~GHikLADFGsCl  223 (1317)
T KOG0612         151 YLVMDYMPGG---DLLTLLSKF--D--RLPEDWARFYTAEIVLALDSLHSMGYVHRDIKPDNVLLDKSGHIKLADFGSCL  223 (1317)
T ss_pred             EEEEECCCCC---HHHHHHHHC--C--CCHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEECCCCCEEECCCHHHH
T ss_conf             8888603683---198887625--8--88189999999999999999986151013578440576366867522105677


Q ss_pred             ECC
Q ss_conf             169
Q gi|254780623|r  311 RLS  313 (517)
Q Consensus       311 ~l~  313 (517)
                      .++
T Consensus       224 km~  226 (1317)
T KOG0612         224 KMD  226 (1317)
T ss_pred             HCC
T ss_conf             307


No 340
>KOG1095 consensus
Probab=97.41  E-value=0.00067  Score=49.42  Aligned_cols=194  Identities=20%  Similarity=0.265  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHHHHHHEECCCCCC----EEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             86766677888865555021288872----36876403104688777788999875321146854334691799999998
Q gi|254780623|r  122 EFDDPIAAASIAQVHPAVVHDINGYR----KVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ  197 (517)
Q Consensus       122 ~fdePlasASiaQVh~A~l~d~~~g~----~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~  197 (517)
                      ++..+|+.+--|-||+|.+.+.. |.    .||||..+++-                                       
T Consensus       695 ~l~~~lG~G~FG~VY~g~~~~~~-~~~~~~~vaiK~l~~~~---------------------------------------  734 (1025)
T KOG1095         695 TLLRVLGKGAFGEVYEGTYSDVP-GSVSPIQVAVKSLKRLS---------------------------------------  734 (1025)
T ss_pred             EEEEEECCCCCCCEEEEEEECCC-CCCCCEEEEEEECCCCC---------------------------------------
T ss_conf             76443045554315788985689-98551478997325567---------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHH------HHCCCHHHHHHHH
Q ss_conf             87888655999988987202-4467766430000102217833530024786324267733------2002256899999
Q gi|254780623|r  198 VTKMEMDLRLEAAAFSEMAE-NTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLR------ACGHDLERLSVTL  270 (517)
Q Consensus       198 ~l~~ElD~~~Ea~n~~~~~~-~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~------~~~~d~~~la~~l  270 (517)
                      ...++.||..||.+|..|.. |.-.--.|.+.      ++...+++||++|--+-..-+-.      .....+++|..-.
T Consensus       735 ~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~------~~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a  808 (1025)
T KOG1095         735 SEQEVSDFLKEALLMSKFDHPNIVSLIGVCLD------SGPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFA  808 (1025)
T ss_pred             CHHHHHHHHHHHHHHHCCCCCCEEEEEEEECC------CCCCEEEEHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf             88999999999988752788662337776058------998678850204672899987436666777878899999999


Q ss_pred             HH--HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHCCCC
Q ss_conf             99--99998974486617878622898028953574340312169899999997669997187278999-9998412667
Q gi|254780623|r  271 VQ--SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVAD-VHFEAGYVPR  347 (517)
Q Consensus       271 ~~--~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~-~l~~lg~~~~  347 (517)
                      ++  .-++-+-..+|+|=|.-.=|.+++....+-+-||||...+-               +.||.+.-. +++=.-+-+|
T Consensus       809 ~dvA~G~~YLe~~~fvHRDLAaRNCLL~~~r~VKIaDFGlArDiy---------------~~~yyr~~~~a~lPvkWm~P  873 (1025)
T KOG1095         809 LDVAKGMNYLESKHFVHRDLAARNCLLDERRVVKIADFGLARDIY---------------DKDYYRKHGEAMLPVKWMPP  873 (1025)
T ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHEEECCCCCEEECCCCHHHHHH---------------HCHHEECCCCCCCCEECCCH
T ss_conf             988644578986797675510443232156747874441137664---------------01004316742362552787


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHH
Q ss_conf             7893689999998521001334333113568999997545
Q gi|254780623|r  348 HHNRFSFAQAIRAIGEPIHGQSSDVISMGKLLTMLFEITE  387 (517)
Q Consensus       348 ~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  387 (517)
                          +.       +.+..++..-+-++||-++=+++....
T Consensus       874 ----Es-------l~d~iFtskSDvWsFGVllWEifslG~  902 (1025)
T KOG1095         874 ----ES-------LKDGIFTSKSDVWSFGVLLWEIFSLGA  902 (1025)
T ss_pred             ----HH-------HHHCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             ----99-------851663212112366789999983788


No 341
>KOG0585 consensus
Probab=97.40  E-value=0.0023  Score=45.27  Aligned_cols=159  Identities=17%  Similarity=0.189  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      .-++++|-|-|-.|+=-  ..|+-|||||..-.            ++.........+..+...+..+             
T Consensus       103 ~eiG~G~yGkVkLar~~--~~~~l~AiKil~K~------------~~~~~~~~~~~~a~~~~~~ekv-------------  155 (576)
T KOG0585         103 KEIGSGQYGKVKLARDE--VDGKLYAIKILPKK------------ELRRQYGFPRQPAMKLMPIEKV-------------  155 (576)
T ss_pred             HHHCCCCCCEEEEEEEC--CCCCEEEEEEECHH------------HHHHHCCCCCCCCCCCCCHHHH-------------
T ss_conf             34258764269988615--77827999952534------------5433115654500245718999-------------


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC-EEEEECCCCCCCCHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             5999988987202446776643000010221783-35300247863242677332-002256899999999999897448
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD-VITMEWIDGVKISDTEKLRA-CGHDLERLSVTLVQSFLLHTLRDG  282 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~-VLvmE~i~G~~i~d~~~l~~-~~~d~~~la~~l~~~~~~qi~~~G  282 (517)
                       ++|..-+++...    -.-|..=+|.++-.+.+ -||.||+..-++......+. ...+-.+---+-+-.-++-+-..|
T Consensus       156 -~~EIailKkl~H----~nVV~LiEvLDDP~s~~~YlVley~s~G~v~w~p~d~~els~~~Ar~ylrDvv~GLEYLH~Qg  230 (576)
T KOG0585         156 -RREIAILKKLHH----PNVVKLIEVLDDPESDKLYLVLEYCSKGEVKWCPPDKPELSEQQARKYLRDVVLGLEYLHYQG  230 (576)
T ss_pred             -HHHHHHHHHCCC----CCEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             -999999973578----671577775068565736998772237755667998533048999999999987788887647


Q ss_pred             EECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             661787862289802895357434031216989
Q gi|254780623|r  283 FFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       283 fFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      ..|.|--|-|+++..+|.+-+=|||..-..+..
T Consensus       231 iiHRDIKPsNLLl~~~g~VKIsDFGVs~~~~~~  263 (576)
T KOG0585         231 IIHRDIKPSNLLLSSDGTVKISDFGVSNEFPQG  263 (576)
T ss_pred             EECCCCCHHHEEECCCCCEEEECCCEEEECCCC
T ss_conf             201566643357758885886035114411467


No 342
>PRK12274 serine/threonine protein kinase; Provisional
Probab=97.40  E-value=0.0017  Score=46.29  Aligned_cols=120  Identities=20%  Similarity=0.234  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEC
Q ss_conf             99998898720244677664300001022178335300247863242677332002256899999999999897448661
Q gi|254780623|r  206 RLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFH  285 (517)
Q Consensus       206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFH  285 (517)
                      .+|.+.+++...      --.+|+.+.  .+.+-|+-+||+|.++-...   ..| |..-  -+-++..++++-.-|+-|
T Consensus        29 ~rE~raL~~l~G------l~~~P~ll~--~d~~~Lvr~~i~G~~L~~~~---p~g-d~~f--Frsa~rll~~mH~~Gv~H   94 (198)
T PRK12274         29 RREALALRQLDG------LPRTPRLLH--WDGRHLDRSYLAGDAMYQRP---PRG-DLAY--FRAARRLLQQLHRCGVAH   94 (198)
T ss_pred             HHHHHHHHHCCC------CCCCCCEEE--ECCCEEEEEEECCCCCHHCC---CCC-CHHH--HHHHHHHHHHHHHCCCCC
T ss_conf             999999985569------888874465--45873776432684300058---889-7699--999999999999837744


Q ss_pred             CCC-CCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf             787-86228980289535743403121698999999976699971872789999998412
Q gi|254780623|r  286 ADL-HPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGY  344 (517)
Q Consensus       286 aDP-HpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~  344 (517)
                      .|. ++||+++.+||+-.+|||-.....++.-+     ++.-+...|...+.+.-..-|.
T Consensus        95 ~DLak~~N~L~~~dg~p~liDFQlA~~~~rr~~-----~~Rila~eDlrhllK~kr~y~~  149 (198)
T PRK12274         95 NDLAKEANWLVQEDGSPAVIDFQLAVRGNPRAR-----WMRLLAREDLRHLLKHKRMYCP  149 (198)
T ss_pred             CHHCCCCCEEECCCCCEEEEEEEECCCCCCHHH-----HHHHHHHHHHHHHHHHHHHHCC
T ss_conf             202055588887999978897441002363038-----9999999989999998886389


No 343
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=97.38  E-value=0.0013  Score=47.15  Aligned_cols=102  Identities=24%  Similarity=0.337  Sum_probs=67.8

Q ss_pred             CCCCCHHCCCHHCCCCE------EEEECCCCCC-CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEE
Q ss_conf             66430000102217833------5300247863-2426773320022568999999999998974486617878622898
Q gi|254780623|r  223 QGFRVPKIDWNRTERDV------ITMEWIDGVK-ISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFV  295 (517)
Q Consensus       223 ~~v~vP~vy~~~st~~V------LvmE~i~G~~-i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v  295 (517)
                      ..+-||+|+-...+++-      |.+|.|+|.. +.+.  +.....+...-  .-+.....++...|++|+|...-||++
T Consensus       101 ~glpVP~PvAa~v~r~g~~Y~Adiite~I~~a~~L~~~--L~~~~l~~~~w--~~iG~~I~~fH~~gV~H~DLN~~NILi  176 (240)
T PRK01723        101 AGLPVPRPIAARVVRHGLFYRADILIERIEGARDLVAL--LQEGPLSEEQW--QAIGRLIARFHDAGVYHADLNAHNILL  176 (240)
T ss_pred             CCCCCCCHHHHHHEECCEEEEHHHHHHHCCCCCCHHHH--HHHCCCCHHHH--HHHHHHHHHHHHCCCCCCCCCHHHEEE
T ss_conf             79999817777703236278835656356897048999--85089988999--999999999997489766667441678


Q ss_pred             ECCCCEEEEECCHHEECCH---HHHHHHHHHHHHHH
Q ss_conf             0289535743403121698---99999997669997
Q gi|254780623|r  296 DSKGYIVAVDMGITGRLSK---RERRFLAEILYGFI  328 (517)
Q Consensus       296 ~~dg~i~~lDfG~vg~l~~---~~r~~l~~l~~a~~  328 (517)
                      ++++++.+|||-=+..-++   -...++.+|..++.
T Consensus       177 d~~~~vwlIDFDk~~~~~~~~~Wk~~NL~RL~RSl~  212 (240)
T PRK01723        177 DAGGKFWLIDFDRGELRTPATRWKQANLARLLRSFN  212 (240)
T ss_pred             CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             799988999886303368864488999999999899


No 344
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=97.35  E-value=0.0066  Score=41.71  Aligned_cols=29  Identities=24%  Similarity=0.519  Sum_probs=26.2

Q ss_pred             CCCCCCEEEEECCCCEEEEECC-HHEECCH
Q ss_conf             7878622898028953574340-3121698
Q gi|254780623|r  286 ADLHPGNLFVDSKGYIVAVDMG-ITGRLSK  314 (517)
Q Consensus       286 aDPHpGNi~v~~dg~i~~lDfG-~vg~l~~  314 (517)
                      +|=|.||||++++|++.=|||| +.|..++
T Consensus       207 gDRHn~NImi~~~GhlfHIDFG~~Lg~~~~  236 (353)
T cd05166         207 CDRHNDNIMLTKSGHMFHIDFGKFLGHAQM  236 (353)
T ss_pred             CCCCCCCEEECCCCCEEEEEHHHHHCCCCC
T ss_conf             666788646889985899864466468876


No 345
>pfam01633 Choline_kinase Choline/ethanolamine kinase. Choline kinase catalyses the committed step in the synthesis of phosphatidylcholine by the CDP-choline pathway. This alignment covers the protein kinase portion of the protein. The divergence of this family makes it very difficult to create a model that specifically predicts choline/ethanolamine kinases only. However if Choline_kinase_C is also present then it is definitely a member of this family.
Probab=97.31  E-value=0.0013  Score=47.18  Aligned_cols=34  Identities=29%  Similarity=0.453  Sum_probs=27.2

Q ss_pred             CCEECCCCCCCEEEEE-CCCCEEEEECCHHEECCH
Q ss_conf             4866178786228980-289535743403121698
Q gi|254780623|r  281 DGFFHADLHPGNLFVD-SKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~-~dg~i~~lDfG~vg~l~~  314 (517)
                      -.|=|.|.+||||++. .++++.||||=-.|.=++
T Consensus       141 ~v~cHNDL~~~Nil~~~~~~~l~lID~EYag~n~~  175 (208)
T pfam01633       141 IVFCHNDLQPGNILLLESTNRLVLIDFEYASYNYR  175 (208)
T ss_pred             EEEEEECCCCCCEEEECCCCEEEEEEEEECCCCCH
T ss_conf             16654058866665628998499998840566851


No 346
>KOG0587 consensus
Probab=97.29  E-value=0.0003  Score=52.10  Aligned_cols=150  Identities=18%  Similarity=0.246  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHH--HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             766677888865555021288872368764031046--887777889998753211468543346917999999988788
Q gi|254780623|r  124 DDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVR--KRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKM  201 (517)
Q Consensus       124 dePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~--~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~  201 (517)
                      .|-++-+.=||||+++=++  .|+-+||||+.|...  +.|+....+++...     ..|.                   
T Consensus        24 ~Evig~GtygkVyk~~~~k--~gqlaAiKI~d~~ed~deEIE~EyniLk~~~-----~HpN-------------------   77 (953)
T KOG0587          24 IEVIGNGTYGKVYKGRHVK--TGQLAAIKIMDPTEDEEEEIELEYNMLKKYS-----HHPN-------------------   77 (953)
T ss_pred             EEEEEECCCCEEEEEECEE--CCCEEEEEEECCCCCCCHHHHHHHHHHHHCC-----CCCC-------------------
T ss_conf             9999731440689983200--5720024530677652078899999987535-----7998-------------------


Q ss_pred             HHHHHHHHHHHHHHHCCCC-CCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHH--HHHHHHHHHH--HH
Q ss_conf             8655999988987202446-77664300001022178335300247863242677332002256--8999999999--99
Q gi|254780623|r  202 EMDLRLEAAAFSEMAENTV-KDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLE--RLSVTLVQSF--LL  276 (517)
Q Consensus       202 ElD~~~Ea~n~~~~~~~~~-~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~--~la~~l~~~~--~~  276 (517)
                                .-+|...|. ..+  ..+.       +=.|||||+-|-+++|+..--. |...+  -+|-++-++.  +.
T Consensus        78 ----------v~~fYG~f~k~~~--~~~D-------qLWLVMEfCggGSVTDLVKnt~-g~rl~E~~IaYI~~e~l~gl~  137 (953)
T KOG0587          78 ----------VATFYGAFIKKDP--GNGD-------QLWLVMEFCGGGSVTDLVKNTK-GNRLKEEWIAYILREILRGLA  137 (953)
T ss_pred             ----------CEEEEEEEEEECC--CCCC-------EEEEEEECCCCCCHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
T ss_conf             ----------5058889998428--9987-------3799875147961999986530-220136899999999998899


Q ss_pred             HHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHH
Q ss_conf             8974486617878622898028953574340312169899999
Q gi|254780623|r  277 HTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRF  319 (517)
Q Consensus       277 qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~  319 (517)
                      .+-..-..|-|----||+.+..|++.+.|||.-..++....+-
T Consensus       138 HLH~nkviHRDikG~NiLLT~eg~VKLvDFGvSaQldsT~~rR  180 (953)
T KOG0587         138 HLHNNKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDSTVGRR  180 (953)
T ss_pred             HHHCCCEEEECCCCCEEEEECCCCEEEEEEEEEEEEECCCCCC
T ss_conf             8750716631256745887426767996211245651111445


No 347
>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]
Probab=97.29  E-value=0.00081  Score=48.77  Aligned_cols=171  Identities=18%  Similarity=0.226  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--HHHHHHH-------
Q ss_conf             666778888655550212888723687640310-468877778899987532114685433469--1799999-------
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPG-VRKRFFRDIQVMYLIARIQEKLLPSMRRLC--FSAVVRA-------  194 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~-i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~--~~~~~~e-------  194 (517)
                      .+++| +--.||+-...+   |+. ++||-||+ -+..+...+..|..++.---....-....|  ....++.       
T Consensus        32 ~~l~s-~eN~~f~~~~~~---g~~-iLki~~~~~~~~~i~~el~~l~~La~~~i~v~~Pl~~~dG~~l~~~~~~~r~a~l  106 (331)
T COG2334          32 RGLNS-EENSNFRVQTED---GRY-ILKIYRPGWTRAEIPFELALLQHLAERGIPVPAPLPSLDGELLEALSGGPRPAAL  106 (331)
T ss_pred             CCCCC-CCCCEEEEECCC---CCE-EEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCEEEEE
T ss_conf             32333-467517887179---976-9998268888777799999999999759988777616785611101478657999


Q ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH---HCCCHH-CCCCEEEEECCCCCCCCHHHHHHHHCCC
Q ss_conf             --------9988788865599998898720244677664300---001022-1783353002478632426773320022
Q gi|254780623|r  195 --------LEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVP---KIDWNR-TERDVITMEWIDGVKISDTEKLRACGHD  262 (517)
Q Consensus       195 --------~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP---~vy~~~-st~~VLvmE~i~G~~i~d~~~l~~~~~d  262 (517)
                              ... -..+--+..=++.+-++....++.+.-+=+   ...|+. -+..-.--.+     +.+.. +.+   .
T Consensus       107 f~~l~G~~~~~-~~~~~~~~~lG~~LgrlH~a~~~f~~~~p~~~~~~~w~~~~~~~~~~~~~-----~~~~~-l~a---~  176 (331)
T COG2334         107 FEYLPGRPLER-DDNAEQLEELGRMLGRLHLALRGFPFERPNALRRLEWDILEPRALLRLDL-----VEPED-LRA---A  176 (331)
T ss_pred             EEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-----CCCHH-HHH---H
T ss_conf             88669967677-88789999999999999997477976588733432201111155665314-----78776-779---9


Q ss_pred             HHHHHHHHHHHHHHHHHHCC---EECCCCCCCEEEEECCCC-EEEEECCHHEE
Q ss_conf             56899999999999897448---661787862289802895-35743403121
Q gi|254780623|r  263 LERLSVTLVQSFLLHTLRDG---FFHADLHPGNLFVDSKGY-IVAVDMGITGR  311 (517)
Q Consensus       263 ~~~la~~l~~~~~~qi~~~G---fFHaDPHpGNi~v~~dg~-i~~lDfG~vg~  311 (517)
                      -....+.+....- ..+..+   ..|||.||||+++++++. .+++|||-++.
T Consensus       177 ~~~~~~~~~~~~~-~~lp~~~~~iIH~D~~~~NVl~d~~~~~~g~iDFdDa~~  228 (331)
T COG2334         177 LLAALDRLLARLP-AHLPALGDQIIHGDLHPDNVLFDDDTDVSGFIDFDDAGY  228 (331)
T ss_pred             HHHHHHHHHHHCH-HHCCCCCCEEEECCCCCCCEEECCCCCCCEEEECCCCCC
T ss_conf             9999999997453-326765554576677603477768987000787611244


No 348
>KOG0593 consensus
Probab=97.24  E-value=0.00098  Score=48.11  Aligned_cols=133  Identities=21%  Similarity=0.381  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHHEECCCCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             667788886555502128887236876403-----104688777788999875321146854334691799999998878
Q gi|254780623|r  126 PIAAASIAQVHPAVVHDINGYRKVAVKIIR-----PGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTK  200 (517)
Q Consensus       126 PlasASiaQVh~A~l~d~~~g~~VaVKV~r-----P~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~  200 (517)
                      -++-+|-|-|++++=+|  +|+-||||.-.     |-|.++--++++.++.+           +.-++.++++-|     
T Consensus         9 kvGEGSYGvV~KCrnk~--TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqL-----------kH~NLVnLiEVF-----   70 (396)
T KOG0593           9 KVGEGSYGVVMKCRNKD--TGQIVAIKKFVESEDDPVVKKIALREIRMLKQL-----------KHENLVNLIEVF-----   70 (396)
T ss_pred             CCCCCCCEEEEEECCCC--CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHC-----------CCCHHHHHHHHH-----
T ss_conf             02667633789843688--661799875114775578899999999999860-----------550178899999-----


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH-
Q ss_conf             8865599998898720244677664300001022178335300247863242677332002256899999999999897-
Q gi|254780623|r  201 MEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL-  279 (517)
Q Consensus       201 ~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~-  279 (517)
                                     |+.    .             +=-||-||+|-.-+.+++.. ..|.+.     ..+..|+.|++ 
T Consensus        71 ---------------rrk----r-------------klhLVFE~~dhTvL~eLe~~-p~G~~~-----~~vk~~l~Q~l~  112 (396)
T KOG0593          71 ---------------RRK----R-------------KLHLVFEYCDHTVLHELERY-PNGVPS-----ELVKKYLYQLLK  112 (396)
T ss_pred             ---------------HHC----C-------------EEEEEEEECCHHHHHHHHHC-CCCCCH-----HHHHHHHHHHHH
T ss_conf             ---------------753----6-------------16998653045789999866-589998-----999999999999


Q ss_pred             ------HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             ------44866178786228980289535743403121698
Q gi|254780623|r  280 ------RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       280 ------~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                            .++..|-|--|-||+|+..|.+-+-|||....|+.
T Consensus       113 ai~~cHk~n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~  153 (396)
T KOG0593         113 AIHFCHKNNCIHRDIKPENILITQNGVVKLCDFGFARTLSA  153 (396)
T ss_pred             HHHHHHHCCEECCCCCHHHEEEECCCCEEECCCHHHHHHCC
T ss_conf             96056535801046773336772378278603035676058


No 349
>KOG0592 consensus
Probab=97.22  E-value=0.005  Score=42.65  Aligned_cols=243  Identities=15%  Similarity=0.191  Sum_probs=141.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf             88999999867666778888655550212888723687640310468877778899987532114685433469179999
Q gi|254780623|r  114 APIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVR  193 (517)
Q Consensus       114 ~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~  193 (517)
                      +.+.+.  .|.+=++-||-.+|++|+=++  ++++.||||.--          +   .+.+  ++..+      ..    
T Consensus        70 k~~~DF--~Fg~~lGeGSYStV~~A~~~~--t~keYAiKVl~K----------~---~Iik--e~Kvk------YV----  120 (604)
T KOG0592          70 KTPNDF--KFGKILGEGSYSTVVLAREKA--TGKEYAIKVLDK----------R---YIIK--EKKVK------YV----  120 (604)
T ss_pred             CCCHHC--CHHHEECCCCCEEEEEEEECC--CCCCHHHHHHHH----------H---HHHH--HCCCC------HH----
T ss_conf             681000--110111355321577733236--675222877637----------8---7776--50631------41----


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHHHCC-C---HHHHH
Q ss_conf             999887888655999988987202446776643000010221--78335300247863242677332002-2---56899
Q gi|254780623|r  194 ALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRACGH-D---LERLS  267 (517)
Q Consensus       194 e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~~~~-d---~~~la  267 (517)
                                  .+|-.-+.++.    +.|.|.  +.|--+-  ..=--|+||.++--+-+.  ++..|- |   -+--|
T Consensus       121 ------------~~Ek~~l~~L~----~hPgiv--kLy~TFQD~~sLYFvLe~A~nGdll~~--i~K~Gsfde~caR~YA  180 (604)
T KOG0592         121 ------------TREKEALTQLS----GHPGIV--KLYFTFQDEESLYFVLEYAPNGDLLDL--IKKYGSFDETCARFYA  180 (604)
T ss_pred             ------------HHHHHHHHHHH----CCCCEE--EEEEEEECCCCEEEEEEECCCCCHHHH--HHHHCCCHHHHHHHHH
T ss_conf             ------------37899999862----799759--999986146625888872478718999--9874650278899999


Q ss_pred             HHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCC--------HHHHHHHH
Q ss_conf             9999999998974486617878622898028953574340312169899999997669997187--------27899999
Q gi|254780623|r  268 VTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRD--------YQRVADVH  339 (517)
Q Consensus       268 ~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D--------~~~~~~~l  339 (517)
                      ..++++ ++-+-..|..|-|.-|-||+++.||++-+-|||....|++.....= .........+        .+=+.--+
T Consensus       181 AeIldA-leylH~~GIIHRDlKPENILLd~dmhikITDFGsAK~l~~~~~~~~-~~~~~~~a~s~~~SFVGTAeYVSPEl  258 (604)
T KOG0592         181 AEILDA-LEYLHSNGIIHRDLKPENILLDKDGHIKITDFGSAKILSPSQKSQE-NPVDPNQASSRRSSFVGTAEYVSPEL  258 (604)
T ss_pred             HHHHHH-HHHHHHCCCEECCCCHHHEEECCCCCEEEEECCCCCCCCHHHCCCC-CCCCCCCCCCCCCCEEEEECCCCHHH
T ss_conf             999999-9998746812046773346675888588751555432783341444-76565656676542231001129989


Q ss_pred             HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             9841266778936899999985210013343331135689999975452797128889999999999884
Q gi|254780623|r  340 FEAGYVPRHHNRFSFAQAIRAIGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEG  409 (517)
Q Consensus       340 ~~lg~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~~~ll~r~l~~lEG  409 (517)
                      +.-+...+..|.=+|---+.+++.-  ..|+...+---.++.++++...++=.+|++..=+++-+++.|-
T Consensus       259 L~~~~~~~~sDiWAlGCilyQmlaG--~PPFra~NeyliFqkI~~l~y~fp~~fp~~a~dLv~KLLv~dp  326 (604)
T KOG0592         259 LNDSPAGPSSDLWALGCILYQMLAG--QPPFRAANEYLIFQKIQALDYEFPEGFPEDARDLIKKLLVRDP  326 (604)
T ss_pred             HCCCCCCCCHHHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf             5679888410068999899999638--9987665177999999873244788998899999999870682


No 350
>PRK12396 5-methylribose kinase; Reviewed
Probab=97.22  E-value=0.015  Score=38.84  Aligned_cols=63  Identities=22%  Similarity=0.495  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEE--CCHHEECCHHHHHHHHHHHHHHHCCCHH
Q ss_conf             99999999989744866178786228980289535743--4031216989999999766999718727
Q gi|254780623|r  268 VTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVD--MGITGRLSKRERRFLAEILYGFISRDYQ  333 (517)
Q Consensus       268 ~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lD--fG~vg~l~~~~r~~l~~l~~a~~~~D~~  333 (517)
                      ..+-..|+..  -....|||.|.|+||++++ ..-.||  |+-.|-+.=+.-..+++++.|...+++.
T Consensus       216 a~LK~~Fmt~--aeaLlHGDLHTGSImv~~~-~tkVIDpEFAFYGPmGFDiG~~iaNlllay~s~~~~  280 (409)
T PRK12396        216 AKLKFSFMTN--AQALIHGDLHTGSVFVKND-STKVIDPEFAFYGPMGYDIGNVMANLMFAWVNADAT  280 (409)
T ss_pred             HHHHHHHHHC--CHHHHCCCCCCCCEEEECC-CCEEECCHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             9999987520--0244326755675686078-415876203216874100999999999998437332


No 351
>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]
Probab=97.19  E-value=0.0023  Score=45.24  Aligned_cols=139  Identities=22%  Similarity=0.264  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      .-+|-|--+-||.+...    |.+||+||||++-..                         .                 +
T Consensus        28 ~~L~KG~~s~Vyl~~~~----~~~~a~Kvrr~ds~r-------------------------~-----------------~   61 (201)
T COG2112          28 KELAKGTTSVVYLGEWR----GGEVALKVRRRDSPR-------------------------R-----------------N   61 (201)
T ss_pred             HHHHCCCCCEEEEEECC----CCEEEEEEECCCCCH-------------------------H-----------------H
T ss_conf             66434644479985316----854899995278632-------------------------4-----------------5


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEE
Q ss_conf             59999889872024467766430000102217833530024786324267733200225689999999999989744866
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFF  284 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfF  284 (517)
                      +..||+-++..+-      .-..|+||  +-++..+.|||++|.++.+...    +-|++.+-+.+-.+|.  +=.-|.=
T Consensus        62 l~kEakiLeil~g------~~~~p~vy--~yg~~~i~me~i~G~~L~~~~~----~~~rk~l~~vlE~a~~--LD~~GI~  127 (201)
T COG2112          62 LEKEAKILEILAG------EGVTPEVY--FYGEDFIRMEYIDGRPLGKLEI----GGDRKHLLRVLEKAYK--LDRLGIE  127 (201)
T ss_pred             HHHHHHHHHHHHH------CCCCCEEE--EECHHHHHHHHHCCCCHHHHHH----CCCHHHHHHHHHHHHH--HHHHCCC
T ss_conf             7888999998611------57786599--8310341001205854656651----1168999999999998--8875566


Q ss_pred             CCCCCCC--EEEEECCCCEEEEECCHHE--ECCHHHHHHHHHHH
Q ss_conf             1787862--2898028953574340312--16989999999766
Q gi|254780623|r  285 HADLHPG--NLFVDSKGYIVAVDMGITG--RLSKRERRFLAEIL  324 (517)
Q Consensus       285 HaDPHpG--Ni~v~~dg~i~~lDfG~vg--~l~~~~r~~l~~l~  324 (517)
                      |+-.|-|  |+++ ++++..+|||--..  .-|.+.++.+.-++
T Consensus       128 H~El~~~~k~vlv-~~~~~~iIDFd~At~k~~p~N~Tq~~slL~  170 (201)
T COG2112         128 HGELSRPWKNVLV-NDRDVYIIDFDSATFKKKPRNVTQALSLLF  170 (201)
T ss_pred             HHHHCCCCEEEEE-CCCCEEEEECCCHHHCCCCCHHHHHHHHHH
T ss_conf             3554487326882-699479998251322268711999999987


No 352
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=97.17  E-value=0.014  Score=39.20  Aligned_cols=28  Identities=29%  Similarity=0.576  Sum_probs=25.2

Q ss_pred             CCCCCCEEEEECCCCEEEEECC-HHEECC
Q ss_conf             7878622898028953574340-312169
Q gi|254780623|r  286 ADLHPGNLFVDSKGYIVAVDMG-ITGRLS  313 (517)
Q Consensus       286 aDPHpGNi~v~~dg~i~~lDfG-~vg~l~  313 (517)
                      +|=|.||||++++|.+.=|||| +.|..+
T Consensus       207 gDRHndNIml~~~GhlfHIDFG~~Lg~~~  235 (353)
T cd05176         207 CDRHNDNIMLRSTGHMFHIDFGKFLGHAQ  235 (353)
T ss_pred             CCCCCCCEEECCCCCEEEEECCCCCCCCC
T ss_conf             66678855787998789987640157786


No 353
>KOG0197 consensus
Probab=97.16  E-value=0.00079  Score=48.84  Aligned_cols=140  Identities=17%  Similarity=0.181  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             86766677888865555021288872368764031046887777889998753211468543346917999999988788
Q gi|254780623|r  122 EFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKM  201 (517)
Q Consensus       122 ~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~  201 (517)
                      .+..-|+++-.|-||.+.++.   -.+||||.+++|                                         ...
T Consensus       209 ~l~~~LG~G~FG~V~~g~~~~---~~~vavk~ik~~-----------------------------------------~m~  244 (468)
T KOG0197         209 KLIRELGSGQFGEVWLGKWNG---STKVAVKTIKEG-----------------------------------------SMS  244 (468)
T ss_pred             HHHHHHCCCCCCEEEEEEECC---CCCCCCEEEECC-----------------------------------------CCC
T ss_conf             999984677243488878768---776401377435-----------------------------------------558


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC-C--EEEEECCCCCCCCHHHHH-HHHCCCHHHHHHHHHHHHHHH
Q ss_conf             865599998898720244677664300001022178-3--353002478632426773-320022568999999999998
Q gi|254780623|r  202 EMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER-D--VITMEWIDGVKISDTEKL-RACGHDLERLSVTLVQSFLLH  277 (517)
Q Consensus       202 ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~-~--VLvmE~i~G~~i~d~~~l-~~~~~d~~~la~~l~~~~~~q  277 (517)
                      +-||..||+-|..++...    -|.   .| .-|+. .  -|||||+.--++-|.-.- .....+..++..--.+..--|
T Consensus       245 ~~~f~~Ea~iMk~L~H~~----lV~---l~-gV~~~~~piyIVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM  316 (468)
T KOG0197         245 PEAFLREAQIMKKLRHEK----LVK---LY-GVCTKQEPIYIVTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGM  316 (468)
T ss_pred             HHHHHHHHHHHHHCCCCC----EEE---EE-EEEECCCCEEEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             467899999998575657----677---99-9991587249999744668299985322777666689999999998788


Q ss_pred             --HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             --974486617878622898028953574340312169
Q gi|254780623|r  278 --TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       278 --i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                        +=..+|.|=|.-+-||+|+.++..=+=|||+...+.
T Consensus       317 ~YLes~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~  354 (468)
T KOG0197         317 AYLESKNYIHRDLAARNILVDEDLVVKISDFGLARLIG  354 (468)
T ss_pred             HHHHHCCCCCHHHHHHHEEECCCCEEEECCCCCCCCCC
T ss_conf             88986781220034665564568669874663552158


No 354
>KOG0578 consensus
Probab=97.14  E-value=0.0046  Score=42.93  Aligned_cols=208  Identities=14%  Similarity=0.189  Sum_probs=111.8

Q ss_pred             HHHHHHCCC--CCCHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHH
Q ss_conf             998874887--899899999875404-78899999986766677888865555021288872368764031046887777
Q gi|254780623|r   89 LALLQDKMD--FFPTNTARLSVASAL-KAPIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRD  165 (517)
Q Consensus        89 L~~Lqd~vp--p~~~~~v~~~ie~el-g~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~D  165 (517)
                      ..++.|+-.  |++-+++...+..-. ..++...|..|. =++.++=|-||-|.-.-  +++.||||..  ++..+=+.+
T Consensus       241 ~~~~~d~~~~~~~~~~~~~~~l~~v~~~~dP~~~y~~~~-kigqgaSG~vy~A~~~~--~~~~VaiK~m--~l~~Q~~ke  315 (550)
T KOG0578         241 KQQLSDSSAQSIVSKEEILAKLKRVVSQGDPRSKYTDFK-KIGQGATGGVYVARKIS--TKQEVAIKRM--DLRKQPKKE  315 (550)
T ss_pred             CCCCCCHHCCCCCHHHHHHHHHHEECCCCCHHHHHCCHH-HHCCCCCCCEEEEEECC--CCCEEEEEEE--EECCCCCHH
T ss_conf             212684001565208899987531215788224320123-32566666556566626--7745778998--721487122


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEE
Q ss_conf             88999875321146854334691799999998878886559999--8898720244677664300001022178335300
Q gi|254780623|r  166 IQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEA--AAFSEMAENTVKDQGFRVPKIDWNRTERDVITME  243 (517)
Q Consensus       166 l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea--~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE  243 (517)
                      +                                +..|+.-.++-  .|.-.|-+.|-             +..+=..|||
T Consensus       316 L--------------------------------ilnEi~Vm~~~~H~NiVnfl~Syl-------------v~deLWVVME  350 (550)
T KOG0578         316 L--------------------------------LLNEILVMRDLHHPNIVNFLDSYL-------------VGDELWVVME  350 (550)
T ss_pred             H--------------------------------HHHHHHHHHHCCCHHHHHHHHHHC-------------CCCCEEEEEE
T ss_conf             3--------------------------------577999987466538988777760-------------3560178762


Q ss_pred             CCCCCCCCHHHHHHHHCCCHHHHH---HHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHH
Q ss_conf             247863242677332002256899---99999999989744866178786228980289535743403121698999999
Q gi|254780623|r  244 WIDGVKISDTEKLRACGHDLERLS---VTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFL  320 (517)
Q Consensus       244 ~i~G~~i~d~~~l~~~~~d~~~la---~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l  320 (517)
                      |++|-.++|+...-.  .+-.++|   +....+ ++-+-..|+.|=|----||+...+|++-+.|||.|..++++.-   
T Consensus       351 ym~ggsLTDvVt~~~--~~E~qIA~Icre~l~a-L~fLH~~gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~---  424 (550)
T KOG0578         351 YMEGGSLTDVVTKTR--MTEGQIAAICREILQG-LKFLHARGIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQS---  424 (550)
T ss_pred             CCCCCCCCHHHHCCC--CCHHHHHHHHHHHHHH-HHHHHHCCEEEECCCCCEEEECCCCCEEEEEEEEEECCCCCCC---
T ss_conf             027774000110121--5578999999999999-9998745604403552127852688578752113311564677---


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf             97669997187278999999841266778936899
Q gi|254780623|r  321 AEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFA  355 (517)
Q Consensus       321 ~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~  355 (517)
                         -.+-.-+-++.++--.+.--...+.+|.=-|-
T Consensus       425 ---KR~TmVGTPYWMAPEVvtrk~YG~KVDIWSLG  456 (550)
T KOG0578         425 ---KRSTMVGTPYWMAPEVVTRKPYGPKVDIWSLG  456 (550)
T ss_pred             ---CCCCCCCCCCCCCHHHHHHCCCCCCCCEEEHH
T ss_conf             ---65644578776576564112467631010044


No 355
>KOG1094 consensus
Probab=97.14  E-value=0.00085  Score=48.60  Aligned_cols=202  Identities=20%  Similarity=0.215  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             67666778888655550212888723687640310468877778899987532114685433469179999999887888
Q gi|254780623|r  123 FDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME  202 (517)
Q Consensus       123 fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E  202 (517)
                      |-|-|+.+-.|-||-+.+.   ++.+||||..||+..+--+.                                      
T Consensus       542 ~~ekiGeGqFGEVhLCeve---g~lkVAVK~Lr~~a~~~~r~--------------------------------------  580 (807)
T KOG1094         542 FKEKIGEGQFGEVHLCEVE---GPLKVAVKILRPDATKNARN--------------------------------------  580 (807)
T ss_pred             HHHHHCCCCCCEEEEEEEC---CCEEEEEEECCCCCCHHHHH--------------------------------------
T ss_conf             1344267632305788733---85379875138621046789--------------------------------------


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC---CCEEEEECCCCCCCCHHHHHH-HHCCCHH---HHHHHHH--HH
Q ss_conf             6559999889872024467766430000102217---833530024786324267733-2002256---8999999--99
Q gi|254780623|r  203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE---RDVITMEWIDGVKISDTEKLR-ACGHDLE---RLSVTLV--QS  273 (517)
Q Consensus       203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st---~~VLvmE~i~G~~i~d~~~l~-~~~~d~~---~la~~l~--~~  273 (517)
                       ||..|++-+.+.++     |.|.  +++- -|+   +-.++|||++---++..-.-+ +...+-+   .++..+.  -+
T Consensus       581 -~F~kEIkiLsqLkh-----PNIv--eLvG-VC~~DePicmI~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgma  651 (807)
T KOG1094         581 -DFLKEIKILSRLKH-----PNIV--ELLG-VCVQDDPLCMITEYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMA  651 (807)
T ss_pred             -HHHHHHHHHHCCCC-----CCEE--EEEE-EEECCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             -99999999861489-----9856--7886-5414773677777775370999997525863123216799999998999


Q ss_pred             HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHH-----------HHHHHHHH
Q ss_conf             9998974486617878622898028953574340312169899999997669997187278-----------99999984
Q gi|254780623|r  274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQR-----------VADVHFEA  342 (517)
Q Consensus       274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~-----------~~~~l~~l  342 (517)
                      |+.   --+|.|.|.-+-|.+|+.++.+-+-||||...|-               .+|+.+           ++=.-+-+
T Consensus       652 YLe---s~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~ly---------------sg~yy~vqgr~vlpiRwmawEsill  713 (807)
T KOG1094         652 YLE---SLNFVHRDLATRNCLVDGEFTIKIADFGMSRNLY---------------SGDYYRVQGRAVLPIRWMAWESILL  713 (807)
T ss_pred             HHH---HHCHHHCCCCCCCEEECCCCCEEECCCCCCCCCC---------------CCCCEEEECCEEEEEEEHHHHHHHH
T ss_conf             997---6222311453003566475307964765323345---------------6873354121441143124788975


Q ss_pred             HCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCC
Q ss_conf             12667789368999999852100133433311356899999754527971
Q gi|254780623|r  343 GYVPRHHNRFSFAQAIRAIGEPIHGQSSDVISMGKLLTMLFEITELFDMM  392 (517)
Q Consensus       343 g~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  392 (517)
                      |--+...|.=.|--.+-+++-....+|.+++.=.+++....+..+..+.+
T Consensus       714 gkFttaSDvWafgvTlwE~~~~C~e~Py~~ltdeqvveN~~~~~~~q~~~  763 (807)
T KOG1094         714 GKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQVVENAGEFFRDQGRQ  763 (807)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             66652233556678899999998618654532788987565423799853


No 356
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=97.12  E-value=0.019  Score=38.21  Aligned_cols=28  Identities=25%  Similarity=0.577  Sum_probs=25.4

Q ss_pred             CCCCCCEEEEECCCCEEEEECC-HHEECC
Q ss_conf             7878622898028953574340-312169
Q gi|254780623|r  286 ADLHPGNLFVDSKGYIVAVDMG-ITGRLS  313 (517)
Q Consensus       286 aDPHpGNi~v~~dg~i~~lDfG-~vg~l~  313 (517)
                      +|=|.||||++++|++.=|||| +.|..+
T Consensus       208 gDRHndNIml~~~GhlfHIDFG~iLg~~~  236 (354)
T cd00895         208 CDRHNDNIMLKTTGHMFHIDFGRFLGHAQ  236 (354)
T ss_pred             CCCCCCCEEECCCCCEEEEEHHHHHCCCC
T ss_conf             56687845787999889873345533687


No 357
>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes. ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo
Probab=97.08  E-value=0.0039  Score=43.45  Aligned_cols=179  Identities=17%  Similarity=0.183  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHH--HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH-HHHH
Q ss_conf             6677888865555021288872368764031046887777--889998753211468543346917999999988-7888
Q gi|254780623|r  126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRD--IQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV-TKME  202 (517)
Q Consensus       126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~D--l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-l~~E  202 (517)
                      ||..|--=|+|+.+..+++ ++.|+|+|=-+|.+..|.++  ..+++.++..  .+.|..-.......++||-.. ....
T Consensus         5 ~l~GGlTN~~y~v~~~~~~-~~~~v~Ri~G~~te~~IdR~~E~~~~~~l~~~--gl~p~l~~~f~~grieefi~g~~l~~   81 (235)
T cd05157           5 RFTGGITNKLVKVSNKEDN-QDAVLVRVYGNKTELIIDRERELRIHKLLSKH--GLAPKLYATFQNGLIYEFIPGRTLEP   81 (235)
T ss_pred             ECCCCCCCCEEEEEECCCC-CCEEEEEECCCCCCCEECHHHHHHHHHHHHHC--CCCCCEEEECCCCEEEEEECCCCCCH
T ss_conf             8278536742899865899-87899993889867347789999999999985--99971899759977999777855996


Q ss_pred             HH------HHHHHHHHHHHHCCCCC----CCCCCCHHCCCHHCCCCEEEEECCCCCCC--CHHHH-HH-HHCCCHHHHHH
Q ss_conf             65------59999889872024467----76643000010221783353002478632--42677-33-20022568999
Q gi|254780623|r  203 MD------LRLEAAAFSEMAENTVK----DQGFRVPKIDWNRTERDVITMEWIDGVKI--SDTEK-LR-ACGHDLERLSV  268 (517)
Q Consensus       203 lD------~~~Ea~n~~~~~~~~~~----~~~v~vP~vy~~~st~~VLvmE~i~G~~i--~d~~~-l~-~~~~d~~~la~  268 (517)
                      -|      ...=|+.+.+|+..--.    ...-..|.++....       .|+.-.+-  .+... .. ....+...+..
T Consensus        82 ~d~~~~~~~~~IA~~l~~lH~~~~~~~~~~~~~~~~~~~~~i~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  154 (235)
T cd05157          82 EDLRNPKIYRLIARELAKLHSIKPPEAISSPGTPKPILWPTIR-------KWINLVPTEFKKPEKFQKKTKAISFEQLRD  154 (235)
T ss_pred             HHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH-------HHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf             7800948999999999998647675664334566452899999-------999985765300565512001221999999


Q ss_pred             H---HHHHHHHHHHHCCEECCCCCCCEEEEE-CCCCEEEEECCHHEECCH
Q ss_conf             9---999999989744866178786228980-289535743403121698
Q gi|254780623|r  269 T---LVQSFLLHTLRDGFFHADLHPGNLFVD-SKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       269 ~---l~~~~~~qi~~~GfFHaDPHpGNi~v~-~dg~i~~lDfG~vg~l~~  314 (517)
                      .   +.+..-..-..-.|=|-|+.||||++. .++++.+|||=-.|.=++
T Consensus       155 ~~~~l~~~l~~~~~~~v~CHNDL~~~Nil~~~~~~~l~lIDfEYag~N~~  204 (235)
T cd05157         155 EISWLKELLSALNSPIVFCHNDLLSGNIIYNEEKNSVKFIDYEYAGYNYR  204 (235)
T ss_pred             HHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCEEEEEECCCCCCCH
T ss_conf             99999999734699802444668745467617999589997788888831


No 358
>KOG0663 consensus
Probab=97.06  E-value=0.0016  Score=46.45  Aligned_cols=143  Identities=19%  Similarity=0.256  Sum_probs=84.9

Q ss_pred             HHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             867--666778888655550212888723687640310468877778899987532114685433469179999999887
Q gi|254780623|r  122 EFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT  199 (517)
Q Consensus       122 ~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  199 (517)
                      +|+  .-|+.+|-|-||||+=+  .+++-||.|=.++.-                       ....+.+         +-
T Consensus        77 efe~lnrI~EGtyGiVYRakdk--~t~eIVALKr~kmek-----------------------ek~GFPI---------ts  122 (419)
T KOG0663          77 EFEKLNRIEEGTYGVVYRAKDK--KTDEIVALKRLKMEK-----------------------EKEGFPI---------TS  122 (419)
T ss_pred             HHHHHHHCCCCCCEEEEEECCC--CCCEEEEEEECCCCC-----------------------CCCCCCC---------HH
T ss_conf             9888761056752368872257--766068864035564-----------------------5578760---------66


Q ss_pred             HHHHHHHHHHHHHHHHH-CCCCCCCCCCCHHCCCHHCCC-CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             88865599998898720-244677664300001022178-3353002478632426773320022568999999999998
Q gi|254780623|r  200 KMEMDLRLEAAAFSEMA-ENTVKDQGFRVPKIDWNRTER-DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH  277 (517)
Q Consensus       200 ~~ElD~~~Ea~n~~~~~-~~~~~~~~v~vP~vy~~~st~-~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q  277 (517)
                      ++|++.      +.+.+ .|.     |.|-+|.-.-+-. --+||||++-    |+..+-..-  ++.....-+++.+.|
T Consensus       123 LREIni------Ll~~~H~NI-----V~vkEVVvG~~~d~iy~VMe~~Eh----DLksl~d~m--~q~F~~~evK~L~~Q  185 (419)
T KOG0663         123 LREINI------LLKARHPNI-----VEVKEVVVGSNMDKIYIVMEYVEH----DLKSLMETM--KQPFLPGEVKTLMLQ  185 (419)
T ss_pred             HHHHHH------HHHCCCCCE-----EEEEEEEECCCCCEEEEEHHHHHH----HHHHHHHHC--CCCCCHHHHHHHHHH
T ss_conf             999999------985389773-----356788842554516665887776----699999844--577756889999999


Q ss_pred             H-------HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             9-------7448661787862289802895357434031216989
Q gi|254780623|r  278 T-------LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       278 i-------~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      +       -..+..|-|.-|.|++.+.+|-|-+-|||+......-
T Consensus       186 lL~glk~lH~~wilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp  230 (419)
T KOG0663         186 LLRGLKHLHDNWILHRDLKTSNLLLSHKGILKIADFGLAREYGSP  230 (419)
T ss_pred             HHHHHHHHHHCEEEECCCCHHHEEECCCCCEEECCCCCHHHHCCC
T ss_conf             999999886460574256431222116884776143203432587


No 359
>PRK06149 hypothetical protein; Provisional
Probab=97.06  E-value=0.0037  Score=43.65  Aligned_cols=157  Identities=13%  Similarity=0.100  Sum_probs=86.2

Q ss_pred             CCCCCCHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHH-HHHHHHHHHHH
Q ss_conf             887899899999875404788--999999867666778888655550212888723687640310468-87777889998
Q gi|254780623|r   95 KMDFFPTNTARLSVASALKAP--IEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRK-RFFRDIQVMYL  171 (517)
Q Consensus        95 ~vpp~~~~~v~~~ie~elg~~--~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~-~i~~Dl~~l~~  171 (517)
                      -.|.++-+++.+++++.+|-.  +..+-++-|         |=++.+-.   .| +-|+||-+|+=.. .++.-..+|..
T Consensus        13 p~P~~S~~eA~~ll~~~yGi~g~l~~L~sErD---------~NF~v~~~---~g-~yVLKI~n~~e~~~~ld~Q~~aL~H   79 (972)
T PRK06149         13 PRPDVSEAQAQEILAQHYGLSGTLASLGSQQD---------RNFRVDTD---RG-RFVLKICHGAYTTVELEAQHAALRH   79 (972)
T ss_pred             CCCCCCHHHHHHHHHHHCCCEEEEEECCCCCC---------CCEEEECC---CC-CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             86999999999999986798799851786015---------12579818---98-7899962788987899999999999


Q ss_pred             HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC------------CE
Q ss_conf             753211468543346917999999988788865599998898720244677664300001022178------------33
Q gi|254780623|r  172 IARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER------------DV  239 (517)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~------------~V  239 (517)
                      ++..                                              .+.+.+|+|.+..+++            .|
T Consensus        80 La~~----------------------------------------------~~~l~vP~vi~t~~G~~~~~~~~~g~~~~v  113 (972)
T PRK06149         80 LAEA----------------------------------------------EPALRVPVVIPANDGEELLTLDVRGQGLHV  113 (972)
T ss_pred             HHHC----------------------------------------------CCCCCCCEEEECCCCCEEEEEECCCCEEEE
T ss_conf             9836----------------------------------------------999989977536999857999648977999


Q ss_pred             EEEECCCCCCCCHHHH---------------------------------------------HHH--HCCCHHHHHHHHHH
Q ss_conf             5300247863242677---------------------------------------------332--00225689999999
Q gi|254780623|r  240 ITMEWIDGVKISDTEK---------------------------------------------LRA--CGHDLERLSVTLVQ  272 (517)
Q Consensus       240 LvmE~i~G~~i~d~~~---------------------------------------------l~~--~~~d~~~la~~l~~  272 (517)
                      =+++|++|.++++...                                             +..  ...+++++.+..+.
T Consensus       114 RLlsyl~G~~l~~~~~~s~~l~~~LG~~lg~l~~AL~~F~HP~~~R~~~WDl~~a~~~~~~ll~~I~D~~~R~~i~~~l~  193 (972)
T PRK06149        114 RLLEYLEGQPLTRLGHLAPASVAGLGALCARVDRALADFDHPGLDRTLQWDLRHAGAVIDHLLPHVADPAQRDRIAEATR  193 (972)
T ss_pred             EEEEEECCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             99980098743448889989999999999999998657988776787560701118999999886399999999999999


Q ss_pred             HHHHH------HHHCCEECCCCCCCEEEEECCC----CE-EEEECCHHE
Q ss_conf             99998------9744866178786228980289----53-574340312
Q gi|254780623|r  273 SFLLH------TLRDGFFHADLHPGNLFVDSKG----YI-VAVDMGITG  310 (517)
Q Consensus       273 ~~~~q------i~~~GfFHaDPHpGNi~v~~dg----~i-~~lDfG~vg  310 (517)
                      .|.+.      -+..+..|.|+..=||+|++|+    ++ .+||||=+.
T Consensus       194 ~f~~~v~P~l~~Lr~qvIHND~ND~NIlV~~d~~~~~~vsGIIDFGD~~  242 (972)
T PRK06149        194 DAVRRLQPLADALPLQAVHLDITDDNVVWSRDAGGQWQPDGVIDFGDLT  242 (972)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEHHHHH
T ss_conf             9999741545538623254788645578506888873045576535545


No 360
>KOG1187 consensus
Probab=97.03  E-value=0.00053  Score=50.18  Aligned_cols=183  Identities=14%  Similarity=0.176  Sum_probs=109.9

Q ss_pred             HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             9867--66677888865555021288872368764031046887777889998753211468543346917999999988
Q gi|254780623|r  121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV  198 (517)
Q Consensus       121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  198 (517)
                      ..|+  .=++.+.-|-||+|.|.|   |..||||...++...                                     .
T Consensus        75 ~~Fs~~~~ig~Ggfg~VYkG~l~~---~~~vAVK~~~~~~~~-------------------------------------~  114 (361)
T KOG1187          75 NNFSESNLIGEGGFGTVYKGVLSD---GTVVAVKRLSSNSGQ-------------------------------------G  114 (361)
T ss_pred             HCCCHHHEEEECCCEEEEEEEECC---CEEEEEEEECCCCCC-------------------------------------C
T ss_conf             367731139945887789999689---808999982466774-------------------------------------3


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC----CCEEEEECCCCCCCCHHHHHHHH-CC---CHHHHHHHH
Q ss_conf             78886559999889872024467766430000102217----83353002478632426773320-02---256899999
Q gi|254780623|r  199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE----RDVITMEWIDGVKISDTEKLRAC-GH---DLERLSVTL  270 (517)
Q Consensus       199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st----~~VLvmE~i~G~~i~d~~~l~~~-~~---d~~~la~~l  270 (517)
                         +-+|.+|...+.+++.  ++.  |..    -.||.    .++||-||+..-++.|.-..... ..   .|-++|--.
T Consensus       115 ---~~eF~~Ev~~ls~l~H--~Nl--v~L----lGyC~e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~  183 (361)
T KOG1187         115 ---EREFLNEVEILSRLRH--PNL--VKL----LGYCLEGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGA  183 (361)
T ss_pred             ---HHHHHHHHHHHHCCCC--CCC--CCE----EEEEECCCCCEEEEEECCCCCCHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf             ---3879999999843898--684--538----88881699815899956899988998557888898989999999999


Q ss_pred             HH--HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
Q ss_conf             99--999989744866178786228980289535743403121698-999999976699971872789999998412667
Q gi|254780623|r  271 VQ--SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK-RERRFLAEILYGFISRDYQRVADVHFEAGYVPR  347 (517)
Q Consensus       271 ~~--~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~-~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~  347 (517)
                      ++  .|++.-..--+.|.|--|.||+++.|..--+-|||+....+. ....... .     .+...-++-.....|.++.
T Consensus       184 A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~~~~~~~~~~-~-----~gt~gY~~PEy~~~g~lt~  257 (361)
T KOG1187         184 ARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKLGPEGDTSVSTT-V-----MGTFGYLAPEYASTGKLTE  257 (361)
T ss_pred             HHHHHHHCCCCCCCEEECCCCHHHEEECCCCCEEECCCCCCCCCCCCCCCEEEE-C-----CCCCCCCCHHHHHHCCCCC
T ss_conf             889998726899987879778999607889976836565650267555401343-2-----6756715877861378774


Q ss_pred             CCCHHHHHHHHHH
Q ss_conf             7893689999998
Q gi|254780623|r  348 HHNRFSFAQAIRA  360 (517)
Q Consensus       348 ~~d~~~~~~~i~~  360 (517)
                      ..|...|---+-+
T Consensus       258 KsDVySFGVvllE  270 (361)
T KOG1187         258 KSDVYSFGVVLLE  270 (361)
T ss_pred             CCCEECCCHHHHH
T ss_conf             1643626589999


No 361
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=97.00  E-value=0.043  Score=35.38  Aligned_cols=25  Identities=28%  Similarity=0.511  Sum_probs=23.4

Q ss_pred             CCCCCCCEEEEECCCCEEEEECCHH
Q ss_conf             1787862289802895357434031
Q gi|254780623|r  285 HADLHPGNLFVDSKGYIVAVDMGIT  309 (517)
Q Consensus       285 HaDPHpGNi~v~~dg~i~~lDfG~v  309 (517)
                      =+|=|.||||++++|+++=||||.+
T Consensus       206 igDRH~~NImi~~~G~l~HIDFG~~  230 (350)
T cd00896         206 VGDRHLDNLLLTKDGKLFHIDFGYI  230 (350)
T ss_pred             CCCCCCCCEEECCCCCEEEEEEHHH
T ss_conf             6775767456999998899841344


No 362
>cd05153 HomoserineK_II Homoserine Kinase, type II. Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.
Probab=96.96  E-value=0.0036  Score=43.74  Aligned_cols=33  Identities=27%  Similarity=0.395  Sum_probs=27.3

Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             744866178786228980289535743403121
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                      +-.|..|||++|.|+++..|.-.++|||..++.
T Consensus       173 LP~GiIHgDLF~DNVlF~~d~vsGiIDFy~ac~  205 (296)
T cd05153         173 LPRGVIHADLFRDNVLFDGDELSGVIDFYFACT  205 (296)
T ss_pred             CCCCCCCCCCCCCCEEEECCCCEEEECHHHHCC
T ss_conf             886553243342334450687402313454143


No 363
>KOG4721 consensus
Probab=96.96  E-value=0.016  Score=38.70  Aligned_cols=235  Identities=18%  Similarity=0.182  Sum_probs=136.0

Q ss_pred             CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCH
Q ss_conf             598899999998874887899899999875404788999999867--666778888655550212888723687640310
Q gi|254780623|r   80 LIGKKLSEDLALLQDKMDFFPTNTARLSVASALKAPIEELYCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPG  157 (517)
Q Consensus        80 llp~~~~~eL~~Lqd~vpp~~~~~v~~~ie~elg~~~~~~F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~  157 (517)
                      ++...|..|.++-|+..=-+||+                   ++.  |=++|++=|-|.+++|+    ++.||||    .
T Consensus       102 ~iGk~~s~e~k~qq~e~WeiPFe-------------------~IsELeWlGSGaQGAVF~Grl~----netVAVK----K  154 (904)
T KOG4721         102 MIGKAYSTEHKQQQEELWEIPFE-------------------EISELEWLGSGAQGAVFLGRLH----NETVAVK----K  154 (904)
T ss_pred             HHCCCEEEEHHHHHHHHCCCCHH-------------------HHHHHHHHCCCCCCCEEEEECC----CCEEHHH----H
T ss_conf             72540223213211120037788-------------------8645554236766415630014----7340267----7


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC
Q ss_conf             46887777889998753211468543346917999999988788865599998898720244677664300001022178
Q gi|254780623|r  158 VRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER  237 (517)
Q Consensus       158 i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~  237 (517)
                      |++.=++|++-|+.+-     . |                             |+..    |+   .         .||+
T Consensus       155 V~elkETdIKHLRkLk-----H-~-----------------------------NII~----Fk---G---------VCtq  183 (904)
T KOG4721         155 VRELKETDIKHLRKLK-----H-P-----------------------------NIIT----FK---G---------VCTQ  183 (904)
T ss_pred             HHHHHHHHHHHHHHCC-----C-C-----------------------------CEEE----EE---E---------EECC
T ss_conf             7664055688987536-----8-6-----------------------------6036----74---2---------1227


Q ss_pred             ---CEEEEECCCCCCCCHHHHHHHHC-CCHHHHHH--HHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             ---33530024786324267733200-22568999--9999999989744866178786228980289535743403121
Q gi|254780623|r  238 ---DVITMEWIDGVKISDTEKLRACG-HDLERLSV--TLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       238 ---~VLvmE~i~G~~i~d~~~l~~~~-~d~~~la~--~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                         -+++|||+.--.+-.+  |++.. +.+..++.  +++-.-+.-+-.+.++|-|...-||+|+.+..+-+-|||--.+
T Consensus       184 sPcyCIiMEfCa~GqL~~V--Lka~~~itp~llv~Wsk~IA~GM~YLH~hKIIHRDLKSPNiLIs~~d~VKIsDFGTS~e  261 (904)
T KOG4721         184 SPCYCIIMEFCAQGQLYEV--LKAGRPITPSLLVDWSKGIAGGMNYLHLHKIIHRDLKSPNILISYDDVVKISDFGTSKE  261 (904)
T ss_pred             CCEEEEEEECCCCCCHHHH--HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEECCCCCHHH
T ss_conf             9655886201366508999--86268568899999998764256788776676620589866765165277404653476


Q ss_pred             CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH---HCCCCCHHHCCHHHHHHHHHHHHHH
Q ss_conf             6989999999766999718727899999984126677893689999998521---0013343331135689999975452
Q gi|254780623|r  312 LSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRAIGE---PIHGQSSDVISMGKLLTMLFEITEL  388 (517)
Q Consensus       312 l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~  388 (517)
                      +++.-    .+|-.   .+-...++--++.---..+.+|.-.|---+-+++.   +|.+.+..-+-+|.- ...+.  --
T Consensus       262 ~~~~S----TkMSF---aGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdssAIIwGVG-sNsL~--Lp  331 (904)
T KOG4721         262 LSDKS----TKMSF---AGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSSAIIWGVG-SNSLH--LP  331 (904)
T ss_pred             HHHHH----HHHHH---HHHHHHHCHHHHHCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCHHEEEEECC-CCCCC--CC
T ss_conf             65545----45331---32475417787616876431132113789999983677744333120577315-77231--65


Q ss_pred             CCCCCCHHHHHHHHHH
Q ss_conf             7971288899999999
Q gi|254780623|r  389 FDMMTRPELVMLQKTM  404 (517)
Q Consensus       389 ~~~~~P~~~~ll~r~l  404 (517)
                      .+-..|..|.+++|.-
T Consensus       332 vPstcP~GfklL~Kqc  347 (904)
T KOG4721         332 VPSTCPDGFKLLLKQC  347 (904)
T ss_pred             CCCCCCHHHHHHHHHH
T ss_conf             8665840899999998


No 364
>KOG0596 consensus
Probab=96.91  E-value=0.0039  Score=43.43  Aligned_cols=163  Identities=17%  Similarity=0.221  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHH-HHHHCCCHHHHHHHHHHHHHHHHH--
Q ss_conf             5999988987202446776643000010221783--35300247863242677-332002256899999999999897--
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEK-LRACGHDLERLSVTLVQSFLLHTL--  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~-l~~~~~d~~~la~~l~~~~~~qi~--  279 (517)
                      |.+|..-+.+++.+      ..|=..|+---|+.  -+||||=+    .|+.. +...+.....   -.++.|.+|++  
T Consensus       406 y~nEI~lL~KLkg~------~~IIqL~DYEv~d~~lYmvmE~Gd----~DL~kiL~k~~~~~~~---~~lk~ywkqML~a  472 (677)
T KOG0596         406 YRNEIALLNKLKGH------DKIIQLYDYEVTDGYLYMVMECGD----IDLNKILKKKKSIDPD---WFLKFYWKQMLLA  472 (677)
T ss_pred             HHHHHHHHHHHCCC------CEEEEEEEEECCCCEEEEEEECCC----CCHHHHHHHCCCCCCH---HHHHHHHHHHHHH
T ss_conf             98899999984487------417988533504755888751165----5499999755688841---7999999999999


Q ss_pred             -----HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC---------
Q ss_conf             -----448661787862289802895357434031216989999999766999718727899999984126---------
Q gi|254780623|r  280 -----RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYV---------  345 (517)
Q Consensus       280 -----~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~---------  345 (517)
                           .+|..|+|.-|.|+++ -+|++-+||||+...+.+++...+.+=-.+-  -+ +..-+|+.++...         
T Consensus       473 V~~IH~~gIVHSDLKPANFLl-VkG~LKLIDFGIA~aI~~DTTsI~kdsQvGT--~N-YMsPEAl~~~~s~~~~~~~k~K  548 (677)
T KOG0596         473 VKTIHQHGIVHSDLKPANFLL-VKGRLKLIDFGIANAIQPDTTSIVKDSQVGT--VN-YMSPEALTDMSSSRENGKSKIK  548 (677)
T ss_pred             HHHHHHHCEEECCCCCCCEEE-EEEEEEEEEECHHCCCCCCCCCEEECCCCCC--CC-CCCHHHHHHCCCCCCCCCCCEE
T ss_conf             999987230004777531788-8324776640111136766521212110575--45-5698887402433337886400


Q ss_pred             -CCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHH
Q ss_conf             -6778936899999985210013343331135689999975452
Q gi|254780623|r  346 -PRHHNRFSFAQAIRAIGEPIHGQSSDVISMGKLLTMLFEITEL  388 (517)
Q Consensus       346 -~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  388 (517)
                       .+..|.=.+---+..++  |...|++++  ...+..+..+..-
T Consensus       549 i~r~SDvWSLGCILYqMv--YgktPf~~~--~n~~aKl~aI~~P  588 (677)
T KOG0596         549 ISRKSDVWSLGCILYQMV--YGKTPFGQI--INQIAKLHAITDP  588 (677)
T ss_pred             ECCCCCHHHHHHHHHHHH--HCCCCHHHH--HHHHHHHHHHCCC
T ss_conf             367311033556999998--569956777--8899988742589


No 365
>KOG0588 consensus
Probab=96.87  E-value=0.00073  Score=49.08  Aligned_cols=135  Identities=21%  Similarity=0.219  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             76667788886555502128887236876403104688777788999875321146854334691799999998878886
Q gi|254780623|r  124 DDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM  203 (517)
Q Consensus       124 dePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El  203 (517)
                      .+-++.||-|.|-.|+=.  .+|+.+||||.--..                   . .+..   .+..        +    
T Consensus        17 gkTLG~Gstg~vrlakh~--~TGqlaaiKii~k~~-------------------~-~s~s---~~~~--------I----   59 (786)
T KOG0588          17 GKTLGKGSTGCVRLAKHA--ETGQLAAIKIIPKRS-------------------E-LSSS---QPAG--------I----   59 (786)
T ss_pred             CCCCCCCCCCEEHHHHCC--CCCCEEEEEEECCCC-------------------C-CCCC---CCCC--------H----
T ss_conf             022268987602233214--556546899612534-------------------5-6632---2000--------1----


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH--
Q ss_conf             55999988987202446776643000010221--78335300247863242677332002256899999999999897--
Q gi|254780623|r  204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL--  279 (517)
Q Consensus       204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~--  279 (517)
                        .+|..-|+.+..     |.|  =..|+.+.  +.=-||.||++|--+-|.-.  ..|    .+.++=..-||+||+  
T Consensus        60 --erEIviMkLi~H-----pnV--l~LydVwe~~~~lylvlEyv~gGELFdylv--~kG----~l~e~eaa~ff~QIi~g  124 (786)
T KOG0588          60 --EREIVIMKLIEH-----PNV--LRLYDVWENKQHLYLVLEYVPGGELFDYLV--RKG----PLPEREAAHFFRQILDG  124 (786)
T ss_pred             --HHHHHHHHHHCC-----CCE--EEEEEEECCCCEEEEEEEECCCCHHHHHHH--HHC----CCCCHHHHHHHHHHHHH
T ss_conf             --245488777427-----771--256542105735799999637851678998--608----98878999999999998


Q ss_pred             -----HCCEECCCCCCCEEEEECCCCEEEEECCHHE
Q ss_conf             -----4486617878622898028953574340312
Q gi|254780623|r  280 -----RDGFFHADLHPGNLFVDSKGYIVAVDMGITG  310 (517)
Q Consensus       280 -----~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg  310 (517)
                           ..++-|-|.-|-|++++..++|-+-||||..
T Consensus       125 v~yCH~~~icHRDLKpENlLLd~~~nIKIADFGMAs  160 (786)
T KOG0588         125 VSYCHAFNICHRDLKPENLLLDVKNNIKIADFGMAS  160 (786)
T ss_pred             HHHHHHHCCEECCCCCHHHHHHCCCCEEEECCCEEE
T ss_conf             988865050214577244322022677654043241


No 366
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=96.81  E-value=0.056  Score=34.52  Aligned_cols=28  Identities=25%  Similarity=0.551  Sum_probs=25.2

Q ss_pred             CCCCCCEEEEECCCCEEEEECC-HHEECC
Q ss_conf             7878622898028953574340-312169
Q gi|254780623|r  286 ADLHPGNLFVDSKGYIVAVDMG-ITGRLS  313 (517)
Q Consensus       286 aDPHpGNi~v~~dg~i~~lDfG-~vg~l~  313 (517)
                      +|=|.||||++++|++.=|||| +.|..+
T Consensus       208 gDRHndNIml~~~GhlfHIDFG~iLG~~~  236 (354)
T cd05177         208 CDRHNDNIMLTHSGHMFHIDFGKFLGHAQ  236 (354)
T ss_pred             CCCCCCCEEECCCCCEEEEEHHHHCCCCC
T ss_conf             66577855798998789985035406776


No 367
>KOG2269 consensus
Probab=96.79  E-value=0.034  Score=36.14  Aligned_cols=137  Identities=18%  Similarity=0.254  Sum_probs=84.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCC---C
Q ss_conf             6917999999988788865599998898720244677664300001022178335300247863242677332002---2
Q gi|254780623|r  186 LCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGH---D  262 (517)
Q Consensus       186 ~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~---d  262 (517)
                      .++..++.-++         ..|-.|+.|+.+     .++-+|.|.  .--++||||.||-..-+.. ..|+....   .
T Consensus       322 ~NpR~i~~mWA---------EkEmhNL~RMq~-----~GlpcP~vV--~lkkhvLVMsFiGd~~~aA-PkLK~v~l~d~E  384 (531)
T KOG2269         322 QNPRGILKMWA---------EKEMHNLSRMQK-----HGLPCPQVV--KLKKHVLVMSFIGDQGLAA-PKLKNVELTDDE  384 (531)
T ss_pred             CCCHHHHHHHH---------HHHHHHHHHHHH-----CCCCCCCEE--EEECCEEEEEEECCCCCCC-CCCCCCCCCHHH
T ss_conf             48178999989---------999887999986-----399999624--4640168888644777777-421235258688


Q ss_pred             HHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             56899999999999897448661787862289802895357434031216989999999766999718727899999984
Q gi|254780623|r  263 LERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEA  342 (517)
Q Consensus       263 ~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~l  342 (517)
                      ++..-.....+..+..-+.-..|||.--=|++..+ |++.+||-...  +.+..-.+|-     +..+|...++..+...
T Consensus       385 ~~~aY~q~~~~M~~lY~Ec~LVHADlSEyN~Lw~~-gKvw~IDVsQs--vep~HP~~Le-----FL~RDc~Ni~~FF~r~  456 (531)
T KOG2269         385 RRNAYDQVQSIMCRLYKECLLVHADLSEYNLLWTP-GKVWVIDVSQS--VEPSHPRSLE-----FLTRDCQNIITFFTRI  456 (531)
T ss_pred             HHHHHHHHHHHHHHHHHHHHEEECCHHHHHHEECC-CCEEEEECHHC--CCCCCCCHHH-----HHHHHHHHHHHHHHHC
T ss_conf             98799999999999987665111345554131227-81699961001--5889961459-----9998877899999844


Q ss_pred             HCCCC
Q ss_conf             12667
Q gi|254780623|r  343 GYVPR  347 (517)
Q Consensus       343 g~~~~  347 (517)
                      |...-
T Consensus       457 G~pn~  461 (531)
T KOG2269         457 GTPNL  461 (531)
T ss_pred             CCCCC
T ss_conf             88775


No 368
>KOG0616 consensus
Probab=96.75  E-value=0.0098  Score=40.35  Aligned_cols=230  Identities=18%  Similarity=0.181  Sum_probs=127.2

Q ss_pred             HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99867--6667788886555502128887236876403104688777788999875321146854334691799999998
Q gi|254780623|r  120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ  197 (517)
Q Consensus       120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~  197 (517)
                      ...|+  .-++.+|.|-||-.+.+.  +|.--|.||.--.  ++++     |+.+    +                    
T Consensus        43 l~dfe~~~tlGtGSFGrV~LVr~k~--~~~yYAmKvL~k~--~vVk-----lKQv----e--------------------   89 (355)
T KOG0616          43 LQDFERLKTLGTGSFGRVHLVREKH--SGNYYAMKVLDKQ--KVVK-----LKQV----E--------------------   89 (355)
T ss_pred             HHHHEEEEEECCCCCCEEEEEEECC--CCCEEEHHHCCHH--HHHH-----HHHH----H--------------------
T ss_conf             4442001344047642589998717--8846522231778--7787-----9999----9--------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCC-CHHCCC-CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             8788865599998898720244677664300001-022178-33530024786324267733200225689999999999
Q gi|254780623|r  198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKID-WNRTER-DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFL  275 (517)
Q Consensus       198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy-~~~st~-~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~  275 (517)
                      .+      .+|-+-+....     .|.+.  +.| -..+.. =-+||||++|-.+-..  ++..+    +..+..+++|.
T Consensus        90 H~------~nEk~vL~~v~-----~PFlv--~l~~t~kd~~~lymvmeyv~GGElFS~--Lrk~~----rF~e~~arFYA  150 (355)
T KOG0616          90 HT------HNEKRVLKAVS-----HPFLV--KLYGTFKDNSNLYMVMEYVPGGELFSY--LRKSG----RFSEPHARFYA  150 (355)
T ss_pred             HH------HHHHHHHHHCC-----CCEEE--EEEEEECCCCEEEEEEECCCCCHHHHH--HHHCC----CCCCHHHHHHH
T ss_conf             77------61898975404-----87377--887864137778999833787408999--97516----88854677889


Q ss_pred             HHH-------HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
Q ss_conf             989-------7448661787862289802895357434031216989999999766999718727899999984126677
Q gi|254780623|r  276 LHT-------LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRH  348 (517)
Q Consensus       276 ~qi-------~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~  348 (517)
                      .|+       -..+...-|.-|-||+++.+|-|-+.|||...+++..+.. +      +  +.++=++--.+..--....
T Consensus       151 AeivlAleylH~~~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~rT~T-l------C--GTPeYLAPEii~sk~ynka  221 (355)
T KOG0616         151 AEIVLALEYLHSLDIIYRDLKPENLLLDQNGHIKITDFGFAKRVSGRTWT-L------C--GTPEYLAPEIIQSKGYNKA  221 (355)
T ss_pred             HHHHHHHHHHHHCCEEECCCCHHHEEECCCCCEEEEECCCEEEECCCEEE-E------C--CCCCCCCHHHHHCCCCCCC
T ss_conf             99999999987467364368877745446786788743634885686787-4------2--8810037266505888850


Q ss_pred             CCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             8936899999985210013343331135689999975452797128889999999999884998
Q gi|254780623|r  349 HNRFSFAQAIRAIGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVAR  412 (517)
Q Consensus       349 ~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~~~ll~r~l~~lEG~~~  412 (517)
                      +|==.|---|.+++.-+  .|+...+--++.+.+.+--.+++-.+.++.-=+++.|+.++-+.|
T Consensus       222 vDWWalGVLIYEMlaG~--pPF~~~~~~~iY~KI~~~~v~fP~~fs~~~kdLl~~LL~vD~t~R  283 (355)
T KOG0616         222 VDWWALGVLIYEMLAGY--PPFYDDNPIQIYEKILEGKVKFPSYFSSDAKDLLKKLLQVDLTKR  283 (355)
T ss_pred             HHHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             25888889999997279--987678768999999817766886568789999999876536765


No 369
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and 
Probab=96.75  E-value=0.048  Score=34.99  Aligned_cols=28  Identities=25%  Similarity=0.625  Sum_probs=24.8

Q ss_pred             CCCCCCEEEEECCCCEEEEECC-HHEECC
Q ss_conf             7878622898028953574340-312169
Q gi|254780623|r  286 ADLHPGNLFVDSKGYIVAVDMG-ITGRLS  313 (517)
Q Consensus       286 aDPHpGNi~v~~dg~i~~lDfG-~vg~l~  313 (517)
                      +|=|.||||++++|++.=|||| +.|..+
T Consensus       213 gDRHndNIml~~~GhlfHIDFG~iLG~~~  241 (361)
T cd05174         213 GDRHSDNIMIRESGQLFHIDFGHFLGNFK  241 (361)
T ss_pred             CCCCCCCEEECCCCCEEEEEHHHHHCCCC
T ss_conf             66678845788999889986135535677


No 370
>KOG0694 consensus
Probab=96.74  E-value=0.012  Score=39.62  Aligned_cols=250  Identities=12%  Similarity=0.113  Sum_probs=142.4

Q ss_pred             HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             667788886555502128887236876403104688777-7889998753211468543346917999999988788865
Q gi|254780623|r  126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFR-DIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~-Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      -++-||.|-|..|.++.  +++.-||||+.-+.-  +.. |..-.+                                  
T Consensus       375 vLGkGsFGkV~lae~k~--~~e~yAIK~LKK~~I--l~~d~Ve~~~----------------------------------  416 (694)
T KOG0694         375 VLGRGSFGKVLLAELKG--TNEYYAIKVLKKGDI--LQRDEVESLM----------------------------------  416 (694)
T ss_pred             EECCCCCCEEEEEEECC--CCCEEEEEEEECCCE--ECCCCHHHHH----------------------------------
T ss_conf             86167675589988748--885799998514653--0354188888----------------------------------


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             599998898720244677664300001022178--335300247863242677332002256899999999999897448
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDG  282 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~G  282 (517)
                        .|.+-.+...    ..|.+.  ..|--+-|+  =--||||+.|--+...-.-......+..+-..=+-+-++=+-++|
T Consensus       417 --~EkrI~~la~----~HPFL~--~L~~~fQT~~~l~fvmey~~Ggdm~~~~~~~~F~e~rarfyaAev~l~L~fLH~~~  488 (694)
T KOG0694         417 --CEKRIFELAN----RHPFLV--NLFSCFQTKEHLFFVMEYVAGGDLMHHIHTDVFSEPRARFYAAEVVLGLQFLHENG  488 (694)
T ss_pred             --HHHHHHHHHC----CCCEEE--ECCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             --9999999851----698473--00200125775899999638881798876472357788899999999998887568


Q ss_pred             EECCCCCCCEEEEECCCCEEEEECCHHEECC-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             6617878622898028953574340312169-899999997669997187278999999841266778936899999985
Q gi|254780623|r  283 FFHADLHPGNLFVDSKGYIVAVDMGITGRLS-KRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRAI  361 (517)
Q Consensus       283 fFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~-~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i~~~  361 (517)
                      +.+-|.---||+++++|.+=+.||||+.+.- ...+..       -.=+-.+=++--++.=...+..+|==.|---+.++
T Consensus       489 IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m~~g~~Ts-------TfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeM  561 (694)
T KOG0694         489 IIYRDLKLDNLLLDTEGHVKIADFGLCKEGMGQGDRTS-------TFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEM  561 (694)
T ss_pred             CEEEECCHHHEEECCCCCEEECCCCCCCCCCCCCCCCC-------CCCCCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             06641333225776667677501453314578887403-------23488343275665267444300088899999999


Q ss_pred             HHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHH
Q ss_conf             21001334333113568999997545279712888999999999988499876889888999-9999999
Q gi|254780623|r  362 GEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVARMLNPEFNMWVS-SEPIVEE  430 (517)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~~~ll~r~l~~lEG~~~~LdP~~d~~~~-~~p~~~~  430 (517)
                      +-  ...|+..-+-.+++..+...--.|+..++.|.+-+++.|++-.-.-|--.++-|.-++ ..||-+.
T Consensus       562 L~--Gq~PF~gddEee~FdsI~~d~~~yP~~ls~ea~~il~~ll~k~p~kRLG~~e~d~~~i~~hpFFr~  629 (694)
T KOG0694         562 LV--GESPFPGDDEEEVFDSIVNDEVRYPRFLSKEAIAIMRRLLRKNPEKRLGSGERDAEDIKKHPFFRS  629 (694)
T ss_pred             HC--CCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHCCCCCCCCCHHHHHCCCCCC
T ss_conf             74--899989998899988885077778775548999999998624931014888787023551874113


No 371
>KOG0196 consensus
Probab=96.71  E-value=0.00057  Score=49.93  Aligned_cols=179  Identities=16%  Similarity=0.187  Sum_probs=119.8

Q ss_pred             HHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCC-CCCEEEEEEECCHHHHHHHHHHHHHH
Q ss_conf             87488789989999987540478899999986766677888865555021288-87236876403104688777788999
Q gi|254780623|r   92 LQDKMDFFPTNTARLSVASALKAPIEELYCEFDDPIAAASIAQVHPAVVHDIN-GYRKVAVKIIRPGVRKRFFRDIQVMY  170 (517)
Q Consensus        92 Lqd~vpp~~~~~v~~~ie~elg~~~~~~F~~fdePlasASiaQVh~A~l~d~~-~g~~VaVKV~rP~i~~~i~~Dl~~l~  170 (517)
                      ..--+.|+.+|+=.+.+ +||.+.++--+-.+|+-|+++..|.|++++|+-.. .-..||||-.+-|-            
T Consensus       603 ~k~YiDP~TYEDPnqAv-reFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~Gy------------  669 (996)
T KOG0196         603 TKTYIDPHTYEDPNQAV-REFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGY------------  669 (996)
T ss_pred             CEEECCCCCCCCCCHHH-HHHHHHCCHHHEEEEEEEECCCCCCEECCCCCCCCCCCEEEEEEEECCCC------------
T ss_conf             43443876646801899-87664248325688988705655412235315899754037776400576------------


Q ss_pred             HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCC
Q ss_conf             87532114685433469179999999887888655999988987202446776643000010221783353002478632
Q gi|254780623|r  171 LIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKI  250 (517)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i  250 (517)
                                                 +-.+..||..||.-|-+|-.    -.-|+.--|.- -|.+=+++.||++--++
T Consensus       670 ---------------------------tekqrrdFL~EAsIMGQFdH----PNIIrLEGVVT-ks~PvMIiTEyMENGsL  717 (996)
T KOG0196         670 ---------------------------TEKQRRDFLSEASIMGQFDH----PNIIRLEGVVT-KSKPVMIITEYMENGSL  717 (996)
T ss_pred             ---------------------------CHHHHHHHHHHHHHCCCCCC----CCEEEEEEEEE-CCCEEEEEHHHHHCCCH
T ss_conf             ---------------------------08777666556554045788----86788987782-48324887666547738


Q ss_pred             CHHHHHHHHCCCHHHH--HHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             4267733200225689--9999999999897448661787862289802895357434031216989
Q gi|254780623|r  251 SDTEKLRACGHDLERL--SVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       251 ~d~~~l~~~~~d~~~l--a~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      +..-+.+......-+|  +-+++-+-++=+-+.|+.|-|.-+-||+|+.+=.--.=|||+...|.++
T Consensus       718 DsFLR~~DGqftviQLVgMLrGIAsGMkYLsdm~YVHRDLAARNILVNsnLvCKVsDFGLSRvledd  784 (996)
T KOG0196         718 DSFLRQNDGQFTVIQLVGMLRGIASGMKYLSDMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDD  784 (996)
T ss_pred             HHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEECCCEEEEECCCCCEEECCCC
T ss_conf             8898645883676027899998887767876437154445566532145137986156640340368


No 372
>KOG0658 consensus
Probab=96.65  E-value=0.00011  Score=55.62  Aligned_cols=145  Identities=20%  Similarity=0.294  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +=+|+||.|-||+|++..  ++++||||=.-|+=+ -=..++.+|+                               .+|
T Consensus        30 ~liG~GsFg~Vyq~~~~e--~~~~vAIKKv~~d~r-~knrEl~im~-------------------------------~l~   75 (364)
T KOG0658          30 RLIGSGSFGVVYQAKLRE--TEEEVAIKKVLQDKR-YKNRELQIMR-------------------------------KLD   75 (364)
T ss_pred             EEEEECCCCEEEEEEECC--CCCEEEEEEECCCCC-CCCHHHHHHH-------------------------------HCC
T ss_conf             789751463189999847--896578986347878-6758899987-------------------------------568


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----
Q ss_conf             599998898720244677664300001022178335300247863242677332002256899999999999897-----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL-----  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~-----  279 (517)
                      =    .|.-++...|..+..-  -++|      .-|||||++-. +.+.  ++.......++...-++.|..|+|     
T Consensus        76 H----pNIV~L~~~f~~~~~~--d~~~------lnlVleymP~t-L~~~--~r~~~~~~~~mp~~~iKLYt~Qlfrgl~y  140 (364)
T KOG0658          76 H----PNIVRLLYFFSSSTES--DEVY------LNLVLEYMPET-LYRV--IRHYTRANQRMPLLEIKLYTYQLFRGLAY  140 (364)
T ss_pred             C----CCEEEEEEEEEECCCC--CHHH------HHHHHHHCHHH-HHHH--HHHHHHCCCCCCEEEEHHHHHHHHHHHHH
T ss_conf             9----6856489899973897--5038------88998754088-9999--99876417777525307899999999888


Q ss_pred             --HCCEECCCCCCCEEEEECC-CCEEEEECCHHEECCHHHHH
Q ss_conf             --4486617878622898028-95357434031216989999
Q gi|254780623|r  280 --RDGFFHADLHPGNLFVDSK-GYIVAVDMGITGRLSKRERR  318 (517)
Q Consensus       280 --~~GfFHaDPHpGNi~v~~d-g~i~~lDfG~vg~l~~~~r~  318 (517)
                        ..|.-|-|--|-|++|+++ |.+=+=|||....|.+....
T Consensus       141 Lh~~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~epn  182 (364)
T KOG0658         141 LHSHGICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVKGEPN  182 (364)
T ss_pred             HHHCCCCCCCCCHHEEEECCCCCEEEECCCCCCEEECCCCCC
T ss_conf             875582037787011888178884885267761340369996


No 373
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=96.62  E-value=0.029  Score=36.67  Aligned_cols=29  Identities=24%  Similarity=0.546  Sum_probs=25.1

Q ss_pred             CCCCCCCEEEEECCCCEEEEECC-HHEECC
Q ss_conf             17878622898028953574340-312169
Q gi|254780623|r  285 HADLHPGNLFVDSKGYIVAVDMG-ITGRLS  313 (517)
Q Consensus       285 HaDPHpGNi~v~~dg~i~~lDfG-~vg~l~  313 (517)
                      =+|=|.||||++++|.++=|||| +.|..+
T Consensus       207 IgDRHn~NImi~~~G~l~HIDFG~iLG~~~  236 (352)
T cd00891         207 IGDRHNDNIMLTKTGHLFHIDFGHFLGNFK  236 (352)
T ss_pred             CCCCCCCCEEECCCCCEEEEECHHHHCCCC
T ss_conf             566677755798888599996447656799


No 374
>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]
Probab=96.59  E-value=0.0016  Score=46.50  Aligned_cols=39  Identities=23%  Similarity=0.250  Sum_probs=33.1

Q ss_pred             CCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHH
Q ss_conf             486617878622898028953574340312169899999
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRF  319 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~  319 (517)
                      -.++|+|-|+||+++.+++.+++|||++++-=+|..=-+
T Consensus       198 ~~lvHGD~~~gNlii~~~~~~gVlDwe~~~lGDP~~Dl~  236 (321)
T COG3173         198 PVLVHGDYRPGNLIIDPGRPTGVLDWELATLGDPLEDLA  236 (321)
T ss_pred             CEEEECCCCCCCEEEECCCEEEEEECCCCCCCCCHHHHH
T ss_conf             656647755687887289725899655666688389988


No 375
>KOG0615 consensus
Probab=96.59  E-value=0.0079  Score=41.06  Aligned_cols=143  Identities=16%  Similarity=0.245  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             76667788886555502128887236876403104688777788999875321146854334691799999998878886
Q gi|254780623|r  124 DDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM  203 (517)
Q Consensus       124 dePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El  203 (517)
                      ++-++||--|-|-.|.=+  ++|+.||||+..-.--                 ....+                ..-.+.
T Consensus       177 ~~~LGsGafg~Vkla~e~--~tgk~vAiKIi~krk~-----------------~~~s~----------------~~~~~~  221 (475)
T KOG0615         177 SKTLGSGAFGLVKLAYEK--KTGKQVAIKIINKRKS-----------------TGCSR----------------AIAKTR  221 (475)
T ss_pred             EEEECCCCEEEEEEEEEC--CCCCEEEEEEEEHHHC-----------------CCCCC----------------CCCCHH
T ss_conf             633268722678887861--5674898544201220-----------------34540----------------125112


Q ss_pred             HHHHHHHHHHHHHCCCCCCCC-CCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH----
Q ss_conf             559999889872024467766-430000102217833530024786324267733200225689999999999989----
Q gi|254780623|r  204 DLRLEAAAFSEMAENTVKDQG-FRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT----  278 (517)
Q Consensus       204 D~~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi----  278 (517)
                      |-.+|+.-++++..     |. |.+-..|.+ .-..-+|||||+|--+-|.  +-+.+.-+..    .-+.|++|+    
T Consensus       222 ~v~~EieILkkL~H-----P~IV~~~d~f~~-~ds~YmVlE~v~GGeLfd~--vv~nk~l~ed----~~K~~f~Qll~av  289 (475)
T KOG0615         222 DVQNEIEILKKLSH-----PNIVRIKDFFEV-PDSSYMVLEYVEGGELFDK--VVANKYLRED----LGKLLFKQLLTAV  289 (475)
T ss_pred             HHHHHHHHHHHCCC-----CCEEEEEEEEEC-CCCEEEEEEEECCCCHHHH--HHHCCCCCCH----HHHHHHHHHHHHH
T ss_conf             05789999984689-----868987421635-7702899998147408999--8743653211----5689999999999


Q ss_pred             ---HHCCEECCCCCCCEEEEECC---CCEEEEECCHHEECC
Q ss_conf             ---74486617878622898028---953574340312169
Q gi|254780623|r  279 ---LRDGFFHADLHPGNLFVDSK---GYIVAVDMGITGRLS  313 (517)
Q Consensus       279 ---~~~GfFHaDPHpGNi~v~~d---g~i~~lDfG~vg~l~  313 (517)
                         -..|..|-|.-|-||++..+   --+=+-|||+.....
T Consensus       290 kYLH~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g  330 (475)
T KOG0615         290 KYLHSQGIIHRDIKPENILLSNDAEDCLLKITDFGLAKVSG  330 (475)
T ss_pred             HHHHHCCCCCCCCCCCEEEECCCCCCEEEEEECCCHHHCCC
T ss_conf             99987585025677113775157742589850244222015


No 376
>KOG0201 consensus
Probab=96.55  E-value=0.002  Score=45.65  Aligned_cols=154  Identities=21%  Similarity=0.256  Sum_probs=94.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf             88999999867666778888655550212888723687640310468877778899987532114685433469179999
Q gi|254780623|r  114 APIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVR  193 (517)
Q Consensus       114 ~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~  193 (517)
                      .+++..|... +-|+-+|.|-||+|.-.  .+++.||+||..=.-.+..-.                             
T Consensus         9 ~~~~~~~~~~-~~IgrGsfG~Vyk~~d~--~t~k~vAiKii~Le~~~deIe-----------------------------   56 (467)
T KOG0201           9 IDPELLYTKL-ELIGRGSFGEVYKAIDN--KTKKVVAIKIIDLEEAEDEIE-----------------------------   56 (467)
T ss_pred             CCCCCCCCCC-HHCCCCCCCEEEEEEEC--CCCCEEEEEEECHHHCCHHHH-----------------------------
T ss_conf             7831133201-21056660015552304--414257899960322240467-----------------------------


Q ss_pred             HHHHHHHHHHHHHHHHH--HH-HHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCC-CHHHHHHH
Q ss_conf             99988788865599998--89-8720244677664300001022178335300247863242677332002-25689999
Q gi|254780623|r  194 ALEQVTKMEMDLRLEAA--AF-SEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGH-DLERLSVT  269 (517)
Q Consensus       194 e~~~~l~~ElD~~~Ea~--n~-~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~-d~~~la~~  269 (517)
                          .+.+|+-+..+.+  |. +.+...+.+              +.=-++|||+.|-++.+.  ++..+. +-..++-.
T Consensus        57 ----diqqei~~Ls~~~~~~it~yygsyl~g--------------~~LwiiMey~~gGsv~~l--L~~~~~~~E~~i~~i  116 (467)
T KOG0201          57 ----DIQQEISVLSQCDSPNITEYYGSYLKG--------------TKLWIIMEYCGGGSVLDL--LKSGNILDEFEIAVI  116 (467)
T ss_pred             ----HHHHHHHHHHHCCCCHHHHHHHHEEEC--------------CCHHHHHHHHCCCCHHHH--HCCCCCCCCCEEEEE
T ss_conf             ----788889999862761077664540326--------------138899997268503322--114887764156542


Q ss_pred             H--HHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHH
Q ss_conf             9--9999998974486617878622898028953574340312169899999
Q gi|254780623|r  270 L--VQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRF  319 (517)
Q Consensus       270 l--~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~  319 (517)
                      +  +.--+.=+...+-.|-|--+-|++++.+|.+.+-|||..+.++......
T Consensus       117 lre~l~~l~ylH~~~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~rr  168 (467)
T KOG0201         117 LREVLKGLDYLHSEKKIHRDIKAANILLSESGDVKLADFGVAGQLTNTVKRR  168 (467)
T ss_pred             HHHHHHHHHHHHHCCEECCCCCCCCEEEECCCCEEEEECCEEEEEECHHHCC
T ss_conf             6988877666653250003332355368403757988503366630102124


No 377
>KOG1989 consensus
Probab=96.54  E-value=0.015  Score=39.03  Aligned_cols=206  Identities=14%  Similarity=0.168  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             76667788886555502128887236876403104688777788999875321146854334691799999998878886
Q gi|254780623|r  124 DDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM  203 (517)
Q Consensus       124 dePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El  203 (517)
                      ++=||.|-.||||-|....  +|.++|+|-+.-. .   +.+|+                              .+.+|+
T Consensus        42 ~~vLAEGGFa~VYla~~~~--~~~~~AlKrm~~~-d---e~~L~------------------------------~v~~EI   85 (738)
T KOG1989          42 EKVLAEGGFAQVYLAQDVK--GGKKYALKRMYVN-D---EEALN------------------------------AVKREI   85 (738)
T ss_pred             EEEECCCCCEEEEEEEECC--CCCEEEEEEEECC-C---HHHHH------------------------------HHHHHH
T ss_conf             9997147727999988538--8861565431038-7---88999------------------------------999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCHHC-CCHHCCCCEEEEECCCCCCCCHHHH-HHHHCCCHH---HHHHHHHHHHHHHH
Q ss_conf             559999889872024467766430000-1022178335300247863242677-332002256---89999999999989
Q gi|254780623|r  204 DLRLEAAAFSEMAENTVKDQGFRVPKI-DWNRTERDVITMEWIDGVKISDTEK-LRACGHDLE---RLSVTLVQSFLLHT  278 (517)
Q Consensus       204 D~~~Ea~n~~~~~~~~~~~~~v~vP~v-y~~~st~~VLvmE~i~G~~i~d~~~-l~~~~~d~~---~la~~l~~~~~~qi  278 (517)
                      |+-.-..+.+.+=..+..+..-..=.. .|    +-.|-|||+.|-.+-|+-. ....+..-.   ++....+++...|=
T Consensus        86 ~~MK~L~gh~nIV~yidss~~~~~~~~~~~----EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH  161 (738)
T KOG1989          86 DIMKLLSGHKNIVSYIDSSAINRSSNNGVW----EVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMH  161 (738)
T ss_pred             HHHHHHCCCCCEEEEECCCCCCCCCCCCEE----EEEEEHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             999982489764467315422305788536----8874342437985999999987536773789999999999999986


Q ss_pred             H-HCCEECCCCCCCEEEEECCCCEEEEECCHHEECC-----HHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHCCCCCCC
Q ss_conf             7-4486617878622898028953574340312169-----8999999976699971872--789999998412667789
Q gi|254780623|r  279 L-RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS-----KRERRFLAEILYGFISRDY--QRVADVHFEAGYVPRHHN  350 (517)
Q Consensus       279 ~-~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~-----~~~r~~l~~l~~a~~~~D~--~~~~~~l~~lg~~~~~~d  350 (517)
                      . .--..|=|.---|+++..+|.+.+-|||-+..-.     ...+..+-+=+...++-.|  ..+++.+-.+++ .+..|
T Consensus       162 ~~~pPiIHRDLKiENvLls~~g~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI-~eKsD  240 (738)
T KOG1989         162 YLKPPIIHRDLKIENVLLSADGNYKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPI-GEKSD  240 (738)
T ss_pred             CCCCCCCHHHHHHHHEEECCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCC-CCHHH
T ss_conf             37986200000012047768997885756666665678766777889998888627752368688864158877-50567


Q ss_pred             HHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             3689999998521001334333
Q gi|254780623|r  351 RFSFAQAIRAIGEPIHGQSSDV  372 (517)
Q Consensus       351 ~~~~~~~i~~~~~~~~~~~~~~  372 (517)
                      .=++---+..++  |+..|+++
T Consensus       241 IWALGclLYkLC--y~t~PFe~  260 (738)
T KOG1989         241 IWALGCLLYKLC--YFTTPFEE  260 (738)
T ss_pred             HHHHHHHHHHHH--HHCCCCCC
T ss_conf             899999999998--70787676


No 378
>PRK05231 homoserine kinase; Provisional
Probab=96.53  E-value=0.077  Score=33.43  Aligned_cols=73  Identities=14%  Similarity=0.070  Sum_probs=44.1

Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-CCCCHHHHHHH
Q ss_conf             74486617878622898028953574340312169899999997669997187278999999841266-77893689999
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVP-RHHNRFSFAQA  357 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~-~~~d~~~~~~~  357 (517)
                      +-.|..|||.+|-|++...+.-.++|||-..+                 .+-=...++=++.++|+-. ...|.+.... 
T Consensus       185 LP~GiIHaDLF~DNvlF~~~~lsGiIDFyfac-----------------~d~~~yDLAI~iN~WC~~~~g~~~~~~~~a-  246 (319)
T PRK05231        185 LPRGVIHADLFRDNVLFEGDRLSGFIDFYFAC-----------------NDKLLYDVAITLNDWCFELDGALDVTKARA-  246 (319)
T ss_pred             CCCCCEECCCCCCCEEEECCCEEEEEEEHHCC-----------------CCHHHHHHHHHHHHHHCCCCCCCCHHHHHH-
T ss_conf             88653203224334335089516897502304-----------------616899999999999827889838999999-


Q ss_pred             HHHHHHHCCC-CCHHH
Q ss_conf             9985210013-34333
Q gi|254780623|r  358 IRAIGEPIHG-QSSDV  372 (517)
Q Consensus       358 i~~~~~~~~~-~~~~~  372 (517)
                         +++-|.. +++++
T Consensus       247 ---ll~gY~~~R~L~~  259 (319)
T PRK05231        247 ---LLAAYQSVRPLTA  259 (319)
T ss_pred             ---HHHHHHHCCCCCH
T ss_conf             ---9999985489999


No 379
>KOG0984 consensus
Probab=96.43  E-value=0.0076  Score=41.20  Aligned_cols=148  Identities=19%  Similarity=0.233  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      +-++.+--|||-+-++..  +|.-.|||=.+-.+.                                 +...+.++.|+|
T Consensus        52 ~elGrGayG~vekmrh~~--sg~imAvKri~~tvn---------------------------------~q~q~r~L~dld   96 (282)
T KOG0984          52 EELGRGAYGVVEKMRHIQ--SGTIMAVKRIRATVN---------------------------------SQEQKRLLMDLD   96 (282)
T ss_pred             HHHCCCCCCHHHHEEECC--CCEEEEEEEEHHHCC---------------------------------HHHHHHHHHHHH
T ss_conf             641677433312023235--772899741010068---------------------------------199999987643


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCH-HCCCHHCCCCEEEEECCCCCCCCHH--HHHHHHCCCHHHHHHHHHHHHHHH----
Q ss_conf             599998898720244677664300-0010221783353002478632426--773320022568999999999998----
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVP-KIDWNRTERDVITMEWIDGVKISDT--EKLRACGHDLERLSVTLVQSFLLH----  277 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP-~vy~~~st~~VLvmE~i~G~~i~d~--~~l~~~~~d~~~la~~l~~~~~~q----  277 (517)
                      -.+-...+-..         |++= +.|  -|.+-.+.||-++- +++..  ..++..+.-++.+.-+++-+..+-    
T Consensus        97 i~~r~~~CPf~---------V~FyGa~~--regdvwIcME~M~t-Sldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L  164 (282)
T KOG0984          97 IIMRTVDCPFT---------VHFYGALF--REGDVWICMELMDT-SLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFL  164 (282)
T ss_pred             HHCCCCCCCEE---------EEEEHHHH--CCCCEEEEHHHHHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             44067898848---------88531131--35657886878664-59999999986379676677657599999999999


Q ss_pred             HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHH
Q ss_conf             974486617878622898028953574340312169899999
Q gi|254780623|r  278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRF  319 (517)
Q Consensus       278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~  319 (517)
                      -=.-...|-|-.||||+++.+|++-+-|||+.|.|.+.....
T Consensus       165 ~~kL~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~dSiAkt  206 (282)
T KOG0984         165 HSKLSVIHRDVKPSNILINYDGQVKICDFGISGYLVDSIAKT  206 (282)
T ss_pred             HHHHHHHHCCCCCCEEEECCCCCEEECCCCCCEEEHHHHHHH
T ss_conf             987656103478550788568968870144442652456777


No 380
>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]
Probab=96.37  E-value=0.01  Score=40.19  Aligned_cols=139  Identities=19%  Similarity=0.254  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             66778888655550212888723687640310468877778899987532114685433469179999999887888655
Q gi|254780623|r  126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL  205 (517)
Q Consensus       126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~  205 (517)
                      .++.++.++|+.|...     ..+++|+..+.....-                                     .....+
T Consensus         7 ~l~~g~~~~v~~~~~~-----~~~~~k~~~~~~~~~~-------------------------------------~~~~~~   44 (384)
T COG0515           7 KLGEGSFGEVYLARDR-----KLVALKVLAKKLESKS-------------------------------------KEVERF   44 (384)
T ss_pred             EECCCCCEEEEEEEEC-----CCEEEEEECCCCCCCH-------------------------------------HHHHHH
T ss_conf             8458865789987544-----5047887331224416-------------------------------------789999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHH--CCC---HHHHHHHHHHHHHHHH
Q ss_conf             99998898720244677664300001022178--3353002478632426773320--022---5689999999999989
Q gi|254780623|r  206 RLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRAC--GHD---LERLSVTLVQSFLLHT  278 (517)
Q Consensus       206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~--~~d---~~~la~~l~~~~~~qi  278 (517)
                      .+|+.-...+...    +  .+.+.+..+.+.  ..++|+|+.|..+.+.......  ...   ...+...+... +..+
T Consensus        45 ~~e~~~~~~~~~~----~--~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~  117 (384)
T COG0515          45 LREIQILASLNHP----P--NIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSA-LEYL  117 (384)
T ss_pred             HHHHHHHHHHCCC----C--CCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHH-HHHH
T ss_conf             9899999970798----8--8742798786288227999732687799997502555556889999999999999-9998


Q ss_pred             HHCCEECCCCCCCEEEEECCC-CEEEEECCHHEECC
Q ss_conf             744866178786228980289-53574340312169
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKG-YIVAVDMGITGRLS  313 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg-~i~~lDfG~vg~l~  313 (517)
                      -..|+.|-|.-|.|+++...+ .+.+.|||+...+.
T Consensus       118 H~~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~  153 (384)
T COG0515         118 HSKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLP  153 (384)
T ss_pred             HHCCCCCCCCCHHHEEECCCCCCEEECCCCCHHHCC
T ss_conf             857950788988993567788815765754112035


No 381
>KOG0668 consensus
Probab=96.30  E-value=0.021  Score=37.84  Aligned_cols=208  Identities=17%  Similarity=0.277  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             66778888655550212888723687640310468877778899987532114685433469179999999887888655
Q gi|254780623|r  126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL  205 (517)
Q Consensus       126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~  205 (517)
                      -++-+--..|..|.--.  +.++||||+..|--.+.|.+++.++..+.       +......+-+++.            
T Consensus        45 k~GRGKYSEVFeg~~~~--~neK~ViKiLKPVkkkKIkREikIL~nL~-------gg~NIi~L~DiV~------------  103 (338)
T KOG0668          45 KVGRGKYSEVFEGINIT--NNEKCVIKILKPVKKKKIKREIKILQNLR-------GGPNIIKLLDIVK------------  103 (338)
T ss_pred             HHCCCCHHHHHCCCCCC--CCCEEEEEEECHHHHHHHHHHHHHHHHCC-------CCCCEEEHHHHHC------------
T ss_conf             97484077675030347--77627876404577888999999998505-------9987524523420------------


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH------
Q ss_conf             99998898720244677664300001022178335300247863242677332002256899999999999897------
Q gi|254780623|r  206 RLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL------  279 (517)
Q Consensus       206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~------  279 (517)
                                      +|.-.+|.          |+-||++.+-.   ..+-      ..+..--++.|+.|++      
T Consensus       104 ----------------Dp~Sktpa----------LiFE~v~n~Df---k~ly------~tl~d~dIryY~~elLkALdyC  148 (338)
T KOG0668         104 ----------------DPESKTPS----------LIFEYVNNTDF---KQLY------PTLTDYDIRYYIYELLKALDYC  148 (338)
T ss_pred             ----------------CCCCCCCH----------HHHHHHCCCCH---HHHH------HHHCHHHHHHHHHHHHHHHHHH
T ss_conf             ----------------84336716----------67665245009---9984------4401050999999999998688


Q ss_pred             -HCCEECCCCCCCEEEEECC-CCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf             -4486617878622898028-95357434031216989999999766999718727899999984126677893689999
Q gi|254780623|r  280 -RDGFFHADLHPGNLFVDSK-GYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQA  357 (517)
Q Consensus       280 -~~GfFHaDPHpGNi~v~~d-g~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~  357 (517)
                       --|..|-|-.|-|.||+.. -++-+||||..-.--|.            .+-+..-+.+.+.     .|          
T Consensus       149 HS~GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~------------~eYnVRVASRyfK-----GP----------  201 (338)
T KOG0668         149 HSMGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPG------------KEYNVRVASRYFK-----GP----------  201 (338)
T ss_pred             HHCCCCCCCCCCCEEEECHHHCEEEEEECCHHHHCCCC------------CEEEEEEEHHHCC-----CC----------
T ss_conf             75170115677420344433440344543348662888------------5010342012247-----83----------


Q ss_pred             HHHHHH-HCCCCCHHHCCHHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHHHH------HHHHCCCCC
Q ss_conf             998521-001334333113568999997545279----71288899999999998849------987688988
Q gi|254780623|r  358 IRAIGE-PIHGQSSDVISMGKLLTMLFEITELFD----MMTRPELVMLQKTMVVVEGV------ARMLNPEFN  419 (517)
Q Consensus       358 i~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~P~~~~ll~r~l~~lEG~------~~~LdP~~d  419 (517)
                       +.+++ +.++-+++=+|+|-++..+.  .++-+    -.=+.+++-+.|.+.|-|=.      ...|||+|+
T Consensus       202 -ELLVdy~~YDYSLD~WS~GcmlA~mi--FrkepFFhG~dN~DQLVkIakVLGt~el~~Yl~KY~i~Ld~~~~  271 (338)
T KOG0668         202 -ELLVDYQMYDYSLDMWSLGCMLASMI--FRKEPFFHGHDNYDQLVKIAKVLGTDELYAYLNKYQIDLDPQFE  271 (338)
T ss_pred             -HHEEECHHCCCHHHHHHHHHHHHHHH--HCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHH
T ss_conf             -41241201121067788889999998--62476547888789999999983859999999987116784566


No 382
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=96.25  E-value=0.064  Score=34.05  Aligned_cols=128  Identities=13%  Similarity=0.165  Sum_probs=62.7

Q ss_pred             CCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             78786228980289535743403121698999999976699971872789999998-41266778936899999985210
Q gi|254780623|r  286 ADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFE-AGYVPRHHNRFSFAQAIRAIGEP  364 (517)
Q Consensus       286 aDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~-lg~~~~~~d~~~~~~~i~~~~~~  364 (517)
                      +|=|.||||++++|++.=||||-+...+|.---.+        +.-+-.+...+++ ||   ...+-+.|..-....+..
T Consensus       165 gDRHndNIml~~~GhlfHIDFGfil~~~pg~~~k~--------E~aPFkLt~emv~vmG---G~~~s~~f~~F~~lc~~a  233 (311)
T cd05167         165 KDRHNGNIMIDDDGHIIHIDFGFIFEISPGGNLKF--------ESAPFKLTKEMVQIMG---GSMEATPFKWFVELCVRA  233 (311)
T ss_pred             CCCCCCCEEECCCCCEEEEEHHHHHCCCCCCCCCC--------CCCCEECCHHHHHHHC---CCCCCHHHHHHHHHHHHH
T ss_conf             66578844598999799974055405677888886--------8898433799999868---997767899999999999


Q ss_pred             CCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf             0133433311356899999754527971288899999999998849987688988899999999999986459
Q gi|254780623|r  365 IHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVARMLNPEFNMWVSSEPIVEEWIRDHLG  437 (517)
Q Consensus       365 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~~~ll~r~l~~lEG~~~~LdP~~d~~~~~~p~~~~~l~~~~~  437 (517)
                      |...-    .-+..+..+++++...++  | ++.  .+   .++-+-.++.++.+= +.+..|..+++.+.++
T Consensus       234 f~~lR----k~~~~ii~L~~lM~~sgi--p-~~~--~~---~i~~l~~rf~l~~sd-~ea~~~~~~lI~~S~~  293 (311)
T cd05167         234 FLAVR----PYMDEIVSLVELMLDSGL--P-CFR--GD---TIKNLRQRFAPEKSE-REAAEFMLSLIAESYE  293 (311)
T ss_pred             HHHHH----HHHHHHHHHHHHHHCCCC--C-CCC--HH---HHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHH
T ss_conf             99999----989999999999826999--8-668--56---899999985899999-9999999999999873


No 383
>KOG0591 consensus
Probab=96.23  E-value=0.13  Score=31.66  Aligned_cols=146  Identities=20%  Similarity=0.212  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHHHEECCCCCCEEEEE-EECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             76667788886555502128887236876-40310468877778899987532114685433469179999999887888
Q gi|254780623|r  124 DDPIAAASIAQVHPAVVHDINGYRKVAVK-IIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME  202 (517)
Q Consensus       124 dePlasASiaQVh~A~l~d~~~g~~VaVK-V~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E  202 (517)
                      .+-|+-+|.|-||++.-.-  .|.-||.| ||.-.+...-+.|                                 +..|
T Consensus        24 l~~IG~GsFg~vykv~~~~--~g~l~a~K~i~f~~md~k~rq~---------------------------------~v~E   68 (375)
T KOG0591          24 LKKIGRGSFGEVYKVQCLL--DGKLVALKKIQFGMMDAKARQD---------------------------------CVKE   68 (375)
T ss_pred             HHHHCCCCCHHEEEEEECC--CCCHHHHHHCCHHHCCHHHHHH---------------------------------HHHH
T ss_conf             9997388620057766506--7640222324420116899999---------------------------------9999


Q ss_pred             HHHHHHHH--HHHHHHC-CCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             65599998--8987202-44677664300001022178335300247863242677332002256899999999999897
Q gi|254780623|r  203 MDLRLEAA--AFSEMAE-NTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL  279 (517)
Q Consensus       203 lD~~~Ea~--n~~~~~~-~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~  279 (517)
                      +|...-.+  |.-++.. .|..+..|            =-||||+.++--++..-.  ......+.+-++.+=-|+.|+.
T Consensus        69 i~lLkQL~HpNIVqYy~~~f~~~~ev------------lnivmE~c~~GDLsqmIk--~~K~qkr~ipE~~Vwk~f~QL~  134 (375)
T KOG0591          69 ISLLKQLNHPNIVQYYAHSFIEDNEV------------LNIVMELCDAGDLSQMIK--HFKKQKRLIPEKTVWKYFVQLC  134 (375)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHCCCHH------------HHHHHHHHCCCCHHHHHH--HHHHCCCCCCHHHHHHHHHHHH
T ss_conf             89998638951999977766412223------------678988604667999999--9986065575678999999999


Q ss_pred             -----------HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHH
Q ss_conf             -----------448661787862289802895357434031216989999
Q gi|254780623|r  280 -----------RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERR  318 (517)
Q Consensus       280 -----------~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~  318 (517)
                                 ..-+.|-|--|+|||++..|.+-+=|||.-..++.....
T Consensus       135 ~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l~s~~tf  184 (375)
T KOG0591         135 RALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLGRFLSSKTTF  184 (375)
T ss_pred             HHHHHHHCCCCCCCEEECCCCCHHEEECCCCCEEECCCHHHHHHCCHHHH
T ss_conf             99999841166555234357601068717885664341157673220578


No 384
>KOG0598 consensus
Probab=96.21  E-value=0.019  Score=38.19  Aligned_cols=143  Identities=25%  Similarity=0.358  Sum_probs=85.6

Q ss_pred             HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99867--6667788886555502128887236876403104688777788999875321146854334691799999998
Q gi|254780623|r  120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ  197 (517)
Q Consensus       120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~  197 (517)
                      .+.|+  +-|+.||-|+|...+-+|  +|+--|.||.+-.                +++++              .| .+
T Consensus        24 ~~dF~~lkviGkG~fGkV~~Vrk~d--t~kiYAmKvl~K~----------------~iv~~--------------~e-~~   70 (357)
T KOG0598          24 PDDFEILKVIGKGSFGKVFQVRKKD--TGKIYAMKVLKKK----------------KIVEK--------------KE-VR   70 (357)
T ss_pred             HHHEEEEEEEECCCCCEEEEEEECC--CCCEEEHHHHHHH----------------HHHHH--------------HH-HH
T ss_conf             3461346566216774589999836--5746317555266----------------75201--------------26-88


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC-EEEEECCCCCCCCHHHHHHHHCC---CHH--HHHHHHH
Q ss_conf             87888655999988987202446776643000010221783-35300247863242677332002---256--8999999
Q gi|254780623|r  198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD-VITMEWIDGVKISDTEKLRACGH---DLE--RLSVTLV  271 (517)
Q Consensus       198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~-VLvmE~i~G~~i~d~~~l~~~~~---d~~--~la~~l~  271 (517)
                      .+..|.      .-++++     + ..+.|+-.|.=-+.++ .||+||+.|--+-  -.+...|.   ++.  -+|+...
T Consensus        71 ~~~~Er------~IL~~v-----~-hPFiv~l~ysFQt~~kLylVld~~~GGeLf--~hL~~eg~F~E~~arfYlaEi~l  136 (357)
T KOG0598          71 HTKAER------NILSKI-----K-HPFIVKLIYSFQTEEKLYLVLDYLNGGELF--YHLQREGRFSEDRARFYLAEIVL  136 (357)
T ss_pred             HHHHHH------HHHHHC-----C-CCCEEEEEEECCCCCEEEEEEECCCCCCHH--HHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             889999------999716-----7-884741278612587379999546885199--99975277435578999999999


Q ss_pred             HHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             9999989744866178786228980289535743403121
Q gi|254780623|r  272 QSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       272 ~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                      -  +.-+-..|..|-|.-|-||+++.+|.+.+-|||.+..
T Consensus       137 A--L~~LH~~gIiyRDlKPENILLd~~GHi~LtDFgL~k~  174 (357)
T KOG0598         137 A--LGYLHSKGIIYRDLKPENILLDEQGHIKLTDFGLCKE  174 (357)
T ss_pred             H--HHHHHHCCEEECCCCHHHEEECCCCCEEEECCCCCHH
T ss_conf             9--9999867903135888995666888689821665400


No 385
>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer
Probab=96.16  E-value=0.027  Score=36.95  Aligned_cols=178  Identities=16%  Similarity=0.136  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHEECC----CCCCEEEEEEECCHHHHHHHHH--HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH---
Q ss_conf             67788886555502128----8872368764031046887777--88999875321146854334691799999998---
Q gi|254780623|r  127 IAAASIAQVHPAVVHDI----NGYRKVAVKIIRPGVRKRFFRD--IQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ---  197 (517)
Q Consensus       127 lasASiaQVh~A~l~d~----~~g~~VaVKV~rP~i~~~i~~D--l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~---  197 (517)
                      +..|=-=++|+.++.+.    +..++|+|+|=-++.+..|.++  ..+++.++..  .+.|..-.......++||-.   
T Consensus         6 l~GGiTN~ly~v~~~~~~~~~~~~~~vlvRIyG~~te~~IdR~~E~~~~~~Ls~~--gigpkl~~~F~nGrieefi~g~~   83 (302)
T cd05156           6 ISGGLTNAVYKVSLPDEDALSDEPRKVLLRVYGQSVELLIDRERELVVFARLSER--NLGPKLYGIFPNGRIEEFIPSRT   83 (302)
T ss_pred             ECCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCEECHHHHHHHHHHHHHC--CCCCCEEEEECCCEEEEEECCCC
T ss_conf             0774146118998378776678888699994889866327769999999999975--99971899928965999878701


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCHHCCCHHCCCCEEEEECCCCCCC-CHHHHHHHHCCCHHHHHHH
Q ss_conf             ----87888655999988987202446---776643000010221783353002478632-4267733200225689999
Q gi|254780623|r  198 ----VTKMEMDLRLEAAAFSEMAENTV---KDQGFRVPKIDWNRTERDVITMEWIDGVKI-SDTEKLRACGHDLERLSVT  269 (517)
Q Consensus       198 ----~l~~ElD~~~Ea~n~~~~~~~~~---~~~~v~vP~vy~~~st~~VLvmE~i~G~~i-~d~~~l~~~~~d~~~la~~  269 (517)
                          .+...--+..=|+.+.++...--   ..+....|.++.-+..    .++..++... .+.............. ..
T Consensus        84 L~~~dl~~p~~~~~IA~~l~~lH~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  158 (302)
T cd05156          84 LTTEELRDPDISAEIARRMAKLHSIVVPLSPEERDLTPAIWKLLKQ----WLDLAETVIEIVDSDSEKLLEVELSLF-LE  158 (302)
T ss_pred             CCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH----HHHHHHHHCCCCHHHHHHHHHHHHHHH-HH
T ss_conf             8967814968999999999988446677888633344449999999----998601001332046666654578889-99


Q ss_pred             HHHHHHHHHH---------HCCEECCCCCCCEEEEEC----CCCEEEEECCHHEE
Q ss_conf             9999999897---------448661787862289802----89535743403121
Q gi|254780623|r  270 LVQSFLLHTL---------RDGFFHADLHPGNLFVDS----KGYIVAVDMGITGR  311 (517)
Q Consensus       270 l~~~~~~qi~---------~~GfFHaDPHpGNi~v~~----dg~i~~lDfG~vg~  311 (517)
                      ....+....+         .--|=|-|+.+|||++++    ++++.||||=-.|.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~iVfcHNDLl~gNil~~~~~~~~~~l~~IDfEYag~  213 (302)
T cd05156         159 DEAKYLRFLLESTSEESGSPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYASY  213 (302)
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCCCCCCCEEEEEEECCCC
T ss_conf             9999999999750203689768765477755078616767777269998503666


No 386
>KOG0589 consensus
Probab=96.10  E-value=0.043  Score=35.39  Aligned_cols=154  Identities=16%  Similarity=0.174  Sum_probs=86.3

Q ss_pred             CCCCCHHCCCHHCCC-CEEEEECCCCCCCCHHHHHHHHCCC--HHHHHHHHHHHHHH--HHHHCCEECCCCCCCEEEEEC
Q ss_conf             664300001022178-3353002478632426773320022--56899999999999--897448661787862289802
Q gi|254780623|r  223 QGFRVPKIDWNRTER-DVITMEWIDGVKISDTEKLRACGHD--LERLSVTLVQSFLL--HTLRDGFFHADLHPGNLFVDS  297 (517)
Q Consensus       223 ~~v~vP~vy~~~st~-~VLvmE~i~G~~i~d~~~l~~~~~d--~~~la~~l~~~~~~--qi~~~GfFHaDPHpGNi~v~~  297 (517)
                      .-|..++.+.+ .+. -.+||+|.+|-.+++.-. +..|..  .+++..-++.+.+.  -+-..+.-|=|.-+-|||.++
T Consensus        64 ~iv~y~ds~~~-~~~~l~Ivm~Y~eGg~l~~~i~-~~k~~~f~E~~i~~~~~Q~~~av~ylH~~~iLHRDlK~~Nifltk  141 (426)
T KOG0589          64 NIVEYKDSFEE-DGQLLCIVMEYCEGGDLAQLIK-EQKGVLFPEERILKWFVQILLAVNYLHENRVLHRDLKCANIFLTK  141 (426)
T ss_pred             CEEEECCCHHC-CCCEEEEEEEECCCCCHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC
T ss_conf             75642343100-7856898886357988999999-875034619999999999999999987641002200565532044


Q ss_pred             CCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHH
Q ss_conf             89535743403121698999999976699971872789999998412667789368999999852100133433311356
Q gi|254780623|r  298 KGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRAIGEPIHGQSSDVISMGK  377 (517)
Q Consensus       298 dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~  377 (517)
                      ++.+-+=|||+...+.+..-     +...++--.+..+-+.+.++-+ ....|.-.+.--+.++...  ...++..++..
T Consensus       142 ~~~VkLgDfGlaK~l~~~~~-----~a~tvvGTp~YmcPEil~d~pY-n~KSDiWsLGC~~yEm~~l--k~aF~a~~m~~  213 (426)
T KOG0589         142 DKKVKLGDFGLAKILNPEDS-----LASTVVGTPYYMCPEILSDIPY-NEKSDIWSLGCCLYEMCTL--KPAFKASNMSE  213 (426)
T ss_pred             CCCEEECCHHHHHHCCCCHH-----HHHEECCCCCCCCHHHHCCCCC-CCCCCCHHHCCHHHHHHHC--CCCCCCCCHHH
T ss_conf             68644233235443077033-----2210137875669788679987-7547402212639998752--66667656688


Q ss_pred             HHHHHHHHH
Q ss_conf             899999754
Q gi|254780623|r  378 LLTMLFEIT  386 (517)
Q Consensus       378 ~~~~l~~~~  386 (517)
                      +.+.++...
T Consensus       214 Li~ki~~~~  222 (426)
T KOG0589         214 LILKINRGL  222 (426)
T ss_pred             HHHHHHHCC
T ss_conf             999985412


No 387
>KOG4645 consensus
Probab=96.09  E-value=0.0076  Score=41.21  Aligned_cols=71  Identities=20%  Similarity=0.344  Sum_probs=52.7

Q ss_pred             EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH-------HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             353002478632426773320022568999999999998-------9744866178786228980289535743403121
Q gi|254780623|r  239 VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH-------TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       239 VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q-------i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                      -|-|||++|..++++-.+-  ++..    +.+.+.|..|       +..+|..|-|+-|-||+.+..|-|-+-|||..-.
T Consensus      1310 ~IFMEyC~~GsLa~ll~~g--ri~d----E~vt~vyt~qll~gla~LH~~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~k 1383 (1509)
T KOG4645        1310 YIFMEYCEGGSLASLLEHG--RIED----EMVTRVYTKQLLEGLAYLHEHGIVHRDIKPANILLDFNGLIKYGDFGSAVK 1383 (1509)
T ss_pred             HHHHHHHCCCCHHHHHHHC--CHHH----HHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEECCCCEEEECCCCEEE
T ss_conf             9999985367577798753--2036----667789799999899999866722137775560451378477403553157


Q ss_pred             CCHH
Q ss_conf             6989
Q gi|254780623|r  312 LSKR  315 (517)
Q Consensus       312 l~~~  315 (517)
                      +.+.
T Consensus      1384 i~~~ 1387 (1509)
T KOG4645        1384 IKNN 1387 (1509)
T ss_pred             ECCC
T ss_conf             2474


No 388
>KOG1006 consensus
Probab=96.09  E-value=0.0068  Score=41.59  Aligned_cols=142  Identities=20%  Similarity=0.243  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      .-++.++.|-||+-+-+.  +|+..|||=.|-...   +.+.                              +.++.|+|
T Consensus        70 g~iG~G~fG~V~KM~hk~--sg~~mAVKrIr~~n~---~keq------------------------------~rll~e~d  114 (361)
T KOG1006          70 GEIGNGAFGTVNKMLHKP--SGKLMAVKRIRSNNI---EKEQ------------------------------KRLLMEHD  114 (361)
T ss_pred             HHHCCCCCHHHHHHHCCC--CCCEEEEEEEEECCC---HHHH------------------------------HHHHHHHH
T ss_conf             875277302446452086--674788777630443---6899------------------------------99999888


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHH----HHHHHCCCHHHH-----HHHHHHH
Q ss_conf             5999988987202446776643000010221--7833530024786324267----733200225689-----9999999
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTE----KLRACGHDLERL-----SVTLVQS  273 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~----~l~~~~~d~~~l-----a~~l~~~  273 (517)
                      -..-+.|...            |-+-|-.+-  +.-.++||-++ ++++.+-    ......+.-+-+     |..=+--
T Consensus       115 ~~mks~~cp~------------IVkfyGa~F~EGdcWiCMELMd-~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~  181 (361)
T KOG1006         115 TVMKSSNCPN------------IVKFYGALFSEGDCWICMELMD-ISLDKLYKRVYSVQKSRIPENILGHITVATVDALD  181 (361)
T ss_pred             HHHHHCCCCH------------HHHHHHHHHCCCCEEEEHHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHEEEEEHHHHH
T ss_conf             8873047957------------9998655514776566588876-24999999999988600858663012245346899


Q ss_pred             HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHH
Q ss_conf             9998974486617878622898028953574340312169899
Q gi|254780623|r  274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRE  316 (517)
Q Consensus       274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~  316 (517)
                      |++.  +....|-|--|.||+++..|.+-+-|||++|.|-...
T Consensus       182 yLK~--~lkiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~Si  222 (361)
T KOG1006         182 YLKE--ELKIIHRDVKPSNILLDRHGDVKLCDFGICGQLVDSI  222 (361)
T ss_pred             HHHH--HHHHHHCCCCHHHEEEECCCCEEEECCCCHHHHHHHH
T ss_conf             9988--7656504577212677067987651563307677777


No 389
>TIGR02721 ycfN_thiK thiamine kinase; InterPro: IPR014093   Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (ThiK), and additional proteobacterial homologues taken to be orthologs with equivalent function..
Probab=96.06  E-value=0.0046  Score=42.88  Aligned_cols=147  Identities=20%  Similarity=0.189  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCC----HHHHHHH--------------------
Q ss_conf             6559999889872024467766430000102217833530024786324----2677332--------------------
Q gi|254780623|r  203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKIS----DTEKLRA--------------------  258 (517)
Q Consensus       203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~----d~~~l~~--------------------  258 (517)
                      .|+.+|-+-+..+...      =.-|+|+  +.++.=|+.||++|.-++    |.-.++.                    
T Consensus        37 ~~R~rEy~~L~~l~~~------~laP~~~--~~~~~wllVEWL~G~v~~~dka~~~~l~~~~~~A~~l~~lh~~p~~g~p  108 (262)
T TIGR02721        37 VDRQREYAILQALSAV------KLAPKPI--LVNEHWLLVEWLEGEVITKDKAEFVALDLLGELAALLAQLHSQPRFGYP  108 (262)
T ss_pred             CCHHHHHHHHHHHHHC------CCCCCEE--EECCCCEEEEECCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf             0258899999741305------7888447--7638716886048754135432355620013689999997105788887


Q ss_pred             -----------HCCCHHH---HHHHHHHHHHHH----HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHH
Q ss_conf             -----------0022568---999999999998----9744866178786228980289535743403121698999999
Q gi|254780623|r  259 -----------CGHDLER---LSVTLVQSFLLH----TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFL  320 (517)
Q Consensus       259 -----------~~~d~~~---la~~l~~~~~~q----i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l  320 (517)
                                 ..+|++.   -..++.+-|.++    ++..---|=|-|+|||..+++| +-+|||=-.+-=|+..  .|
T Consensus       109 ~~l~~~~~~YW~~~dp~r~tp~~lr~~~~f~~~~~p~~l~laplH~Dvh~~Nlv~~~~G-~kLIDWEYA~dgDial--eL  185 (262)
T TIGR02721       109 LSLKARIAQYWLQIDPARRTPEWLRLYKQFRSAPEPAPLKLAPLHMDVHAYNLVVTPQG-LKLIDWEYASDGDIAL--EL  185 (262)
T ss_pred             CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCEECCCC-CEEEHHHCCCCCCHHH--HH
T ss_conf             24488999864650787256999999999964577440443003303464312445887-5353111103467789--99


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHH
Q ss_conf             9766999718727899999984126677-8936899999985
Q gi|254780623|r  321 AEILYGFISRDYQRVADVHFEAGYVPRH-HNRFSFAQAIRAI  361 (517)
Q Consensus       321 ~~l~~a~~~~D~~~~~~~l~~lg~~~~~-~d~~~~~~~i~~~  361 (517)
                      +-++.+= .-|....-+.+..=+..... .|...+.+.|+.-
T Consensus       186 a~~~~~n-~~d~~~~~~~~~~Yc~~~~~~~~~~~l~rqv~~W  226 (262)
T TIGR02721       186 AAIIRAN-HWDEEQQQDFVQRYCQRRRIYSDISRLKRQVKQW  226 (262)
T ss_pred             HHHHHHH-CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
T ss_conf             9999971-3781689999999987621542589999998634


No 390
>KOG0670 consensus
Probab=96.00  E-value=0.017  Score=38.54  Aligned_cols=94  Identities=19%  Similarity=0.367  Sum_probs=63.0

Q ss_pred             CCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH-------HCCEECCCCCCCEEEE
Q ss_conf             664300001022178335300247863242677332002256899999999999897-------4486617878622898
Q gi|254780623|r  223 QGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL-------RDGFFHADLHPGNLFV  295 (517)
Q Consensus       223 ~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~-------~~GfFHaDPHpGNi~v  295 (517)
                      ...++=+.|..+-.++-|+|-|.. .+++=-+.++..|.+- -|--.-+++|.+|+|       ..|+.|||--|-||+|
T Consensus       492 dk~Hclrl~r~F~hknHLClVFE~-LslNLRevLKKyG~nv-GL~ikaVRsYaqQLflALklLK~c~vlHaDIKPDNiLV  569 (752)
T KOG0670         492 DKFHCLRLFRHFKHKNHLCLVFEP-LSLNLREVLKKYGRNV-GLHIKAVRSYAQQLFLALKLLKKCGVLHADIKPDNILV  569 (752)
T ss_pred             HHHHHHHHHHHHHHCCEEEEEEHH-HHCHHHHHHHHHCCCC-CEEEHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCEEE
T ss_conf             006799999776421613897422-1242999999857455-52540799999999999999986493231457663675


Q ss_pred             ECCC-CEEEEECCHHEECCHHHHH
Q ss_conf             0289-5357434031216989999
Q gi|254780623|r  296 DSKG-YIVAVDMGITGRLSKRERR  318 (517)
Q Consensus       296 ~~dg-~i~~lDfG~vg~l~~~~r~  318 (517)
                      .+.. -|-+-|||..+..+++.-.
T Consensus       570 NE~k~iLKLCDfGSA~~~~eneit  593 (752)
T KOG0670         570 NESKNILKLCDFGSASFASENEIT  593 (752)
T ss_pred             CCCCCEEEECCCCCCCCCCCCCCC
T ss_conf             167563432367650103445542


No 391
>KOG3653 consensus
Probab=95.93  E-value=0.08  Score=33.27  Aligned_cols=144  Identities=19%  Similarity=0.235  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             67666778888655550212888723687640310468877778899987532114685433469179999999887888
Q gi|254780623|r  123 FDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME  202 (517)
Q Consensus       123 fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E  202 (517)
                      +.+=+|++--|-|++|.|+    ++.||||+-.+.-.+.....-+|...         |.   +.-.             
T Consensus       214 l~eli~~Grfg~V~KaqL~----~~~VAVKifp~~~kqs~~~Ek~Iy~l---------p~---m~h~-------------  264 (534)
T KOG3653         214 LLELIGRGRFGCVWKAQLD----NRLVAVKIFPEQEKQSFQNEKNIYSL---------PG---MKHE-------------  264 (534)
T ss_pred             HHHHHHCCCCCEEEHHHCC----CCEEEEEECCHHHHHHHHHHHHHHHC---------CC---CCCH-------------
T ss_conf             6777625764056430216----85358883688888778758888746---------47---5643-------------


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCH---HHHHHHHHH--HHHHH
Q ss_conf             6559999889872024467766430000102217833530024786324267733200225---689999999--99998
Q gi|254780623|r  203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDL---ERLSVTLVQ--SFLLH  277 (517)
Q Consensus       203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~---~~la~~l~~--~~~~q  277 (517)
                              |+-+|=-.=+.-+..         -.+-.||+||-+--++.|.  |+..-++-   .++|+.+.+  +|++.
T Consensus       265 --------nIl~Fi~~ekr~t~~---------~~eywLVt~fh~kGsL~dy--L~~ntisw~~~cria~SmarGLa~LHe  325 (534)
T KOG3653         265 --------NILQFIGAEKRGTAD---------RMEYWLVTEFHPKGSLCDY--LKANTISWNSLCRIAESMARGLAHLHE  325 (534)
T ss_pred             --------HHHHHHCHHCCCCCC---------CCCEEEEEEECCCCCHHHH--HHHCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             --------688751232057765---------5521677642547748999--986601499998999999888988600


Q ss_pred             HH------HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             97------44866178786228980289535743403121698
Q gi|254780623|r  278 TL------RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       278 i~------~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      =.      .-+.-|-|...-|++|..|+.-|+-|||..-++++
T Consensus       326 e~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~~p  368 (534)
T KOG3653         326 ELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLALRLEP  368 (534)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEECCCEEEEECC
T ss_conf             3776789898633345553536880577478622540477458


No 392
>KOG0199 consensus
Probab=95.92  E-value=0.0085  Score=40.84  Aligned_cols=144  Identities=19%  Similarity=0.238  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCC--EEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872--3687640310468877778899987532114685433469179999999887888
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYR--KVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME  202 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~--~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E  202 (517)
                      |=|+.+|.|-||||.+... +|.  .||||..|++....+.                                       
T Consensus       116 e~LG~GsFgvV~rg~Wt~p-sgk~V~VAVKclr~d~l~~~m---------------------------------------  155 (1039)
T KOG0199         116 ELLGEGSFGVVKRGTWTQP-SGKHVNVAVKCLRDDSLNAIM---------------------------------------  155 (1039)
T ss_pred             HHHCCCCEEEEEECCCCCC-CCCEEEEEEEECCCCCCCHHH---------------------------------------
T ss_conf             8856762146751320279-996776787760478630347---------------------------------------


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH----
Q ss_conf             6559999889872024467766430000102217833530024786324267733200225689999999999989----
Q gi|254780623|r  203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT----  278 (517)
Q Consensus       203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi----  278 (517)
                      =||.+||..|.++..-    .-|+.=-|.  +.-+-.+|||..++-++-|.  |.+...  ..+--..+.-|..||    
T Consensus       156 ddflrEas~M~~L~H~----hliRLyGvV--l~qp~mMV~ELaplGSLldr--Lrka~~--~~llv~~Lcdya~QiA~aM  225 (1039)
T KOG0199         156 DDFLREASHMLKLQHP----HLIRLYGVV--LDQPAMMVFELAPLGSLLDR--LRKAKK--AILLVSRLCDYAMQIAKAM  225 (1039)
T ss_pred             HHHHHHHHHHHHCCCC----CEEEEEEEE--CCCHHHHHHHHCCCCHHHHH--HHHCCC--CCEEHHHHHHHHHHHHHHH
T ss_conf             8899999998715672----446786453--06516677643331069999--864356--6410799999999999998


Q ss_pred             --H-HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHH
Q ss_conf             --7-448661787862289802895357434031216989999
Q gi|254780623|r  279 --L-RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERR  318 (517)
Q Consensus       279 --~-~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~  318 (517)
                        + -.+|.|-|.-.-|+++-....+-+-|||.|..|....-.
T Consensus       226 ~YLeskrlvHRDLAARNlllasprtVKI~DFGLmRaLg~ned~  268 (1039)
T KOG0199         226 QYLESKRLVHRDLAARNLLLASPRTVKICDFGLMRALGENEDM  268 (1039)
T ss_pred             HHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCEECCCCCCCC
T ss_conf             7886510344445554300036552565033000025777762


No 393
>COG3001 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.91  E-value=0.04  Score=35.63  Aligned_cols=185  Identities=17%  Similarity=0.210  Sum_probs=96.4

Q ss_pred             CHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9899999875404788999999867-666778888655550212888723687640310468877778899987532114
Q gi|254780623|r  100 PTNTARLSVASALKAPIEELYCEFD-DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEK  178 (517)
Q Consensus       100 ~~~~v~~~ie~elg~~~~~~F~~fd-ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~  178 (517)
                      .|..|.+.+-+.+|..  ++   -+ +++..+.|-|.++  +.|  +..++-||+.+-.-...                 
T Consensus         1 mw~~i~~qlse~lg~~--~i---~er~~v~gG~inea~~--v~d--g~~~~FvK~n~~~~~~~-----------------   54 (286)
T COG3001           1 MWQAISQQLSEQLGEG--EI---KEREEVSGGDINEAWR--LRD--GTDPFFVKCNQREQLSM-----------------   54 (286)
T ss_pred             CHHHHHHHHHHHHCCH--HH---HHCCCCCCCCCCCEEE--EEC--CCCCEEEEECCHHHHHH-----------------
T ss_conf             9278999999870814--44---4005568864020357--513--88524787062567878-----------------


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCH----
Q ss_conf             68543346917999999988788865599998898720244677664300001022178--335300247863242----
Q gi|254780623|r  179 LLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISD----  252 (517)
Q Consensus       179 ~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d----  252 (517)
                                                |..||.+++.+++    ...|.||+||-.=|+.  ..|||||++--+++.    
T Consensus        55 --------------------------f~AEa~gL~~la~----s~ti~VP~vi~~G~~~~~sylVle~L~~~~~d~~s~~  104 (286)
T COG3001          55 --------------------------FTAEADGLELLAR----SNTITVPKVIAVGASRDHSYLVLEYLPTGPLDAHSAF  104 (286)
T ss_pred             --------------------------HHHHHHHHHHHHH----CCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCHHHH
T ss_conf             --------------------------9998877999987----1873466158844778706899862367999823689


Q ss_pred             -----HHHHHH----------------------------------------------HCCCHHHHHHHHHHHHHHHHHH-
Q ss_conf             -----677332----------------------------------------------0022568999999999998974-
Q gi|254780623|r  253 -----TEKLRA----------------------------------------------CGHDLERLSVTLVQSFLLHTLR-  280 (517)
Q Consensus       253 -----~~~l~~----------------------------------------------~~~d~~~la~~l~~~~~~qi~~-  280 (517)
                           ++.++.                                              .|.+...+ +.+++. ..+.+. 
T Consensus       105 ~~GqqLA~LH~~~~~~~fG~d~dn~iG~t~QpN~W~~~Wa~FfaeqRig~qlqlar~rg~~f~di-d~~~~~-i~elL~~  182 (286)
T COG3001         105 ILGQQLARLHQWGGQAQFGLDFDNYIGTTPQPNTWQRRWATFFAEQRIGWQLQLARERGLTFGDI-DAIVEK-IQELLAD  182 (286)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCH-HHHHHH-HHHHHHC
T ss_conf             99999999986137656676566645787889877234999989865249999999808985679-999999-9998722


Q ss_pred             ----CCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
Q ss_conf             ----48661787862289802895357434031216989999999766999718727899999984126677
Q gi|254780623|r  281 ----DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRH  348 (517)
Q Consensus       281 ----~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~  348 (517)
                          --..|+|.-+||.+..+|| .+++|=.+-. =+++.--++.++|-++    ....-+......-.+.+
T Consensus       183 hqpqPsLlHGDLW~gN~a~~~~G-Pv~fDPA~y~-GDrE~Dlam~elFggf----p~efy~gY~sv~PL~~G  248 (286)
T COG3001         183 HQPQPSLLHGDLWSGNCAFGKDG-PVIFDPACYW-GDRECDLAMLELFGGF----PPEFYDGYQSVSPLPAG  248 (286)
T ss_pred             CCCCCCEEECCCCCCCCCCCCCC-CEEECCCCCC-CCCCCCEEHHHHHCCC----CHHHHHHHHCCCCCCCC
T ss_conf             79995301145222432235789-7354650126-8843131067551677----69999766406889876


No 394
>KOG0194 consensus
Probab=95.90  E-value=0.021  Score=37.85  Aligned_cols=208  Identities=15%  Similarity=0.087  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHHHHEECCCCC--CEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             6667788886555502128887--23687640310468877778899987532114685433469179999999887888
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGY--RKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME  202 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g--~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E  202 (517)
                      +=++++--|-|++|+|+..++.  ..||||..+-                                     +....-.+-
T Consensus       163 kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~-------------------------------------~~~~~~~~~  205 (474)
T KOG0194         163 KKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKG-------------------------------------SSELTKEQI  205 (474)
T ss_pred             CEEECCCCCEEEEEEEEECCCCEEEEEEEEEECC-------------------------------------CCCCCHHHH
T ss_conf             1061232567998899965775000068876224-------------------------------------340149999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHC--CCHHHHHH--HHHHHHHHHH
Q ss_conf             6559999889872024467766430000102217833530024786324267733200--22568999--9999999989
Q gi|254780623|r  203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACG--HDLERLSV--TLVQSFLLHT  278 (517)
Q Consensus       203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~--~d~~~la~--~l~~~~~~qi  278 (517)
                      .+|-+||+-|..+..-     .|.-=--+--...+-.||||++.|-++.+.  |...+  +...+...  ..+-.-+.-+
T Consensus       206 ~e~m~EArvMr~l~H~-----NVVr~yGVa~~~~Pl~ivmEl~~gGsL~~~--L~k~~~~v~~~ek~~~~~~AA~Gl~YL  278 (474)
T KOG0194         206 KEFMKEARVMRQLNHP-----NVVRFYGVAVLEEPLMLVMELCNGGSLDDY--LKKNKKSLPTLEKLRFCYDAARGLEYL  278 (474)
T ss_pred             HHHHHHHHHHHHCCCC-----CEEEEEEEECCCCCCEEEEEECCCCCHHHH--HHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999857998-----789998787178762787873379818999--975777788999999999998679999


Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             74486617878622898028953574340312169899999997669997187278999999841266778936899999
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAI  358 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i  358 (517)
                      -..+..|=|.-.=|.++..++-+=+=|||+.-.-+   .....+   +...=-.+.++=..+.-+..+..+|.-.|---+
T Consensus       279 h~k~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~---~~~~~~---~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~  352 (474)
T KOG0194         279 HSKNCIHRDIAARNCLYSKKGVVKISDFGLSRAGS---QYVMKK---FLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLL  352 (474)
T ss_pred             HHCCCCCHHHHHHHHEECCCCEEEECCCCCCCCCC---CEECCC---CCCCCCCEECCHHHHCCCCCCCCCCHHHEEEEE
T ss_conf             87798536576787052279857867665665774---013034---213576132482243047646565243201036


Q ss_pred             HHHHHHCCCCCHHHCCHHHHHHHHH
Q ss_conf             9852100133433311356899999
Q gi|254780623|r  359 RAIGEPIHGQSSDVISMGKLLTMLF  383 (517)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~l~  383 (517)
                      -++++.-.. |....+..++...+.
T Consensus       353 ~Eif~~g~~-Py~g~~~~~v~~kI~  376 (474)
T KOG0194         353 WEIFENGAE-PYPGMKNYEVKAKIV  376 (474)
T ss_pred             EEEECCCCC-CCCCCCHHHHHHHHH
T ss_conf             776226888-988878999999998


No 395
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=95.79  E-value=0.097  Score=32.65  Aligned_cols=128  Identities=14%  Similarity=0.095  Sum_probs=66.5

Q ss_pred             CCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHCCCCCCCHHHHHHHHHHHHH
Q ss_conf             178786228980289535743403121698999999976699971872789999998-4126677893689999998521
Q gi|254780623|r  285 HADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFE-AGYVPRHHNRFSFAQAIRAIGE  363 (517)
Q Consensus       285 HaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~-lg~~~~~~d~~~~~~~i~~~~~  363 (517)
                      =+|=|.||||++++|+++=||||-+...+|.--   ..+     +.-+-.+...+++ ||-    .+-+.|..-...++.
T Consensus       143 igDRHn~NILl~~~Ghl~HIDFGfilg~~Pg~~---~~~-----E~aPFKLT~emv~vmGG----~~s~~f~~F~~lc~~  210 (289)
T cd00893         143 IKDRHNGNILLDSDGHIIHIDFGFILDSSPGNN---LGF-----EPAAFKFTKEMVDFMGG----KKSDDFKKFRYLCLR  210 (289)
T ss_pred             CCCCCCCCEEECCCCEEEEEEEHHHHCCCCCCC---CCC-----CCCCEECCHHHHHHHCC----CCCHHHHHHHHHHHH
T ss_conf             576578855787888199986023306687889---887-----88980057999998579----885779999999999


Q ss_pred             HCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf             00133433311356899999754527971288899999999998849987688988899999999999986459
Q gi|254780623|r  364 PIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVARMLNPEFNMWVSSEPIVEEWIRDHLG  437 (517)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~~~ll~r~l~~lEG~~~~LdP~~d~~~~~~p~~~~~l~~~~~  437 (517)
                      .|...-    .-+..+..+++++...++  | +|-   +  ..++.+-.++.++.+ -+.+..|..+++.+.++
T Consensus       211 af~~lR----k~~~~ii~L~~lM~~s~l--p-~~~---~--~~i~~l~~rf~l~~s-d~~a~~~~~~lI~~S~~  271 (289)
T cd00893         211 GFIAVR----KHMDLVISLVYLLIFSGL--P-CFR---G--STIKKLKERLCLNMS-EKEAINTVMKKIDSSYN  271 (289)
T ss_pred             HHHHHH----HHHHHHHHHHHHHCCCCC--C-CCC---H--HHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHH
T ss_conf             999999----989999999999807999--8-668---6--799999997199999-99999999999999985


No 396
>KOG2686 consensus
Probab=95.69  E-value=0.051  Score=34.79  Aligned_cols=204  Identities=19%  Similarity=0.247  Sum_probs=109.1

Q ss_pred             CHHHHHHHHHHHCCCCHHHHHHHHH--H--HHHHHHHHHHHHHHEECC-----CCCCEEEEEEECCHHH-HHHHHHHHHH
Q ss_conf             9899999875404788999999867--6--667788886555502128-----8872368764031046-8877778899
Q gi|254780623|r  100 PTNTARLSVASALKAPIEELYCEFD--D--PIAAASIAQVHPAVVHDI-----NGYRKVAVKIIRPGVR-KRFFRDIQVM  169 (517)
Q Consensus       100 ~~~~v~~~ie~elg~~~~~~F~~fd--e--PlasASiaQVh~A~l~d~-----~~g~~VaVKV~rP~i~-~~i~~Dl~~l  169 (517)
                      ....+.....+.+|..|.++-....  +  |-+.+.+  ...+++...     ...++|.+.|-++++. .....++.++
T Consensus        19 ~~~~~~~~~~~~l~~~w~~v~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~k~LlRiyg~~~~~~~~~~Esv~f   96 (366)
T KOG2686          19 ILPRAKELCAQYLGGAWRDVINEEQRLEVIPGGGSNL--LFVVTSSASTTPIKDEPRKVLLRIYGQGVDFSQRETESVMF   96 (366)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCE--EEEEECCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf             1188999999873667765234353255335777654--79994576667865665206888725873377765478999


Q ss_pred             HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCH-HCCCCEEEEECCCCC
Q ss_conf             9875321146854334691799999998878886559999889872024467766430000102-217833530024786
Q gi|254780623|r  170 YLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWN-RTERDVITMEWIDGV  248 (517)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~-~st~~VLvmE~i~G~  248 (517)
                      ..++..  .+.|.+-..-..+=++||-.+-.--++=.++..+..+.+..++....+.+|-.-.. .+=++.  -.|..|.
T Consensus        97 a~lSer--~lGPkL~G~F~~GR~EefipSRtL~~~~i~~p~~S~~Ia~~~~~~H~~~~p~~ke~~~~~~~~--~~wl~~~  172 (366)
T KOG2686          97 AILSER--GLGPKLYGFFSGGRFEEFIPSRTLTLADIRDPEISKRIAAKLAEYHGIEVPGPKEPRSLWERY--KKWLKGA  172 (366)
T ss_pred             HHHHHC--CCCCCEEEECCCCCHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH--HHHHHHH
T ss_conf             997532--778600200278607661355334167542524789999999871677688885479999999--9998655


Q ss_pred             C-CCHHHHHHHHCCC---HHHHHH--HHHHHHHHHHHH--CCEECCCCCCCEEEEE-CCCCEEEEECCHHE
Q ss_conf             3-2426773320022---568999--999999998974--4866178786228980-28953574340312
Q gi|254780623|r  249 K-ISDTEKLRACGHD---LERLSV--TLVQSFLLHTLR--DGFFHADLHPGNLFVD-SKGYIVAVDMGITG  310 (517)
Q Consensus       249 ~-i~d~~~l~~~~~d---~~~la~--~l~~~~~~qi~~--~GfFHaDPHpGNi~v~-~dg~i~~lDfG~vg  310 (517)
                      . +.........+.+   ...+..  ...+.+. +.+.  -+|=|-|.-.|||+.. +.+.+++|||--.+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~-e~~~~~vvFcHNDlq~gNiL~~~~t~~Lv~IDfEYas  242 (366)
T KOG2686         173 KKIKPTEVSYSCGPDKLEIEDLLLELSLFRKWS-ELTKSPVVFCHNDLQYGNILLLNSTKELVLIDFEYAS  242 (366)
T ss_pred             HHCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHH-HCCCCCEEEECCCCCCCCEEEECCCCCEEEEEECCCC
T ss_conf             404787552001542346988999999999998-5478875655365654532132377853688642466


No 397
>KOG1151 consensus
Probab=95.63  E-value=0.039  Score=35.74  Aligned_cols=88  Identities=19%  Similarity=0.280  Sum_probs=52.0

Q ss_pred             CCCCCCHHCCCHHCCC---CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH---------HCCEECCCCC
Q ss_conf             7664300001022178---335300247863242677332002256899999999999897---------4486617878
Q gi|254780623|r  222 DQGFRVPKIDWNRTER---DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL---------RDGFFHADLH  289 (517)
Q Consensus       222 ~~~v~vP~vy~~~st~---~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~---------~~GfFHaDPH  289 (517)
                      -+.-+|-+.|+-+|-.   -+-|.||++|--++=.  ++..    +.+.++-+++..-||.         .--..|-|..
T Consensus       524 LDHpRIVKlYDyfslDtdsFCTVLEYceGNDLDFY--LKQh----klmSEKEARSIiMQiVnAL~YLNEikpPIIHYDLK  597 (775)
T KOG1151         524 LDHPRIVKLYDYFSLDTDSFCTVLEYCEGNDLDFY--LKQH----KLMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLK  597 (775)
T ss_pred             CCCCEEEEEEEEEEECCCCCEEEEEECCCCCHHHH--HHHH----HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf             47531024010245226653343453478850478--7751----10007888999999999999871368970452167


Q ss_pred             CCEEEEEC---CCCEEEEECCHHEECCHH
Q ss_conf             62289802---895357434031216989
Q gi|254780623|r  290 PGNLFVDS---KGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       290 pGNi~v~~---dg~i~~lDfG~vg~l~~~  315 (517)
                      ||||++-.   .|.|-+-|||+...++.+
T Consensus       598 PgNILLv~GtacGeIKITDFGLSKIMddd  626 (775)
T KOG1151         598 PGNILLVNGTACGEIKITDFGLSKIMDDD  626 (775)
T ss_pred             CCCEEEECCCCCCEEEEECCCHHHHCCCC
T ss_conf             76279853763341676304224421577


No 398
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and 
Probab=95.63  E-value=0.17  Score=30.81  Aligned_cols=24  Identities=25%  Similarity=0.560  Sum_probs=22.9

Q ss_pred             CCCCCCEEEEECCCCEEEEECCHH
Q ss_conf             787862289802895357434031
Q gi|254780623|r  286 ADLHPGNLFVDSKGYIVAVDMGIT  309 (517)
Q Consensus       286 aDPHpGNi~v~~dg~i~~lDfG~v  309 (517)
                      +|=|.||||++++|++.=||||-+
T Consensus       217 gDRHndNIml~~~GhlfHIDFG~i  240 (365)
T cd00894         217 GDRHNDNIMITETGNLFHIDFGHI  240 (365)
T ss_pred             CCCCCCCEEECCCCCEEEEEHHHH
T ss_conf             555677535889887899841774


No 399
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=95.53  E-value=0.034  Score=36.15  Aligned_cols=84  Identities=18%  Similarity=0.194  Sum_probs=44.7

Q ss_pred             CCCCHHCCCHHCCCCEEEEECCCCCC-CCHHH--HHHHHCCCHHH---HHHHHHHHHHH-HHHHCCEECCCCCCCEEEEE
Q ss_conf             64300001022178335300247863-24267--73320022568---99999999999-89744866178786228980
Q gi|254780623|r  224 GFRVPKIDWNRTERDVITMEWIDGVK-ISDTE--KLRACGHDLER---LSVTLVQSFLL-HTLRDGFFHADLHPGNLFVD  296 (517)
Q Consensus       224 ~v~vP~vy~~~st~~VLvmE~i~G~~-i~d~~--~l~~~~~d~~~---la~~l~~~~~~-qi~~~GfFHaDPHpGNi~v~  296 (517)
                      .+..|+|.+  .++++=..||+++.. +.++-  .+...-.+...   .-++...++.- .+..+=+-=+|=||+||+++
T Consensus        69 ~~~~Y~Vip--ls~~~GlIe~V~~~~tl~~il~~~~~~~~~~~~~~~~~r~~F~~S~A~~sv~~yilglgDRH~~NIl~~  146 (222)
T cd05164          69 TIRTYAVIP--LNSRSGLIEWVEGTTTLKPVLKKWFWLQFPDPEQWFAARKNYTRSTAVMSIVGYILGLGDRHLDNILID  146 (222)
T ss_pred             EEECCEEEE--CCCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf             336351876--479841699918961267999999999792989999999999999999999999712588886657776


Q ss_pred             C-CCCEEEEECCHH
Q ss_conf             2-895357434031
Q gi|254780623|r  297 S-KGYIVAVDMGIT  309 (517)
Q Consensus       297 ~-dg~i~~lDfG~v  309 (517)
                      . +|+++-+|||.+
T Consensus       147 ~~tG~v~HIDFg~~  160 (222)
T cd05164         147 RETGEVVHIDFGCI  160 (222)
T ss_pred             CCCCCEEEEEHHHH
T ss_conf             48774899841876


No 400
>KOG0906 consensus
Probab=95.44  E-value=0.26  Score=29.34  Aligned_cols=167  Identities=16%  Similarity=0.173  Sum_probs=80.3

Q ss_pred             EEECCCCCCCCHHHHH--------HHHCCCH---HHHHHHHHHHHHHHHHHCCEE-----CCCCCCCEEEEECCCCEEEE
Q ss_conf             3002478632426773--------3200225---689999999999989744866-----17878622898028953574
Q gi|254780623|r  241 TMEWIDGVKISDTEKL--------RACGHDL---ERLSVTLVQSFLLHTLRDGFF-----HADLHPGNLFVDSKGYIVAV  304 (517)
Q Consensus       241 vmE~i~G~~i~d~~~l--------~~~~~d~---~~la~~l~~~~~~qi~~~GfF-----HaDPHpGNi~v~~dg~i~~l  304 (517)
                      .+|+|+|.+++.+-.-        ++..-+.   .-+.-...+.|.+..-.+-+.     -||-|++|+++++||++--+
T Consensus       638 ~vefI~s~~la~Ils~~~~I~~ylke~~p~e~ap~gi~~~v~dnfVkScaGYsVitYILGvGDRhldNLllT~dGk~FHi  717 (843)
T KOG0906         638 FVEFIPSKPLARILSEYHSILMYLKEDRPDENAPFGISPEVMDNFVKSCAGYSVITYILGVGDRHLDNLLLTKDGKLFHI  717 (843)
T ss_pred             CEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEECCCCCEEEE
T ss_conf             18962697489999876689999986289767877777669989998612603235652046777675687358837987


Q ss_pred             ECCHH-EEC----CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHH
Q ss_conf             34031-216----9899999997669997187278999999841266778936899999985210013343331135689
Q gi|254780623|r  305 DMGIT-GRL----SKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRAIGEPIHGQSSDVISMGKLL  379 (517)
Q Consensus       305 DfG~v-g~l----~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  379 (517)
                      |||-+ |+=    +|.++-.             ..++   ..||-. +....++|..-....+...+       .-+.++
T Consensus       718 DFgyIlGRDPKP~pp~MkL~-------------kemv---e~mgg~-es~~Yq~F~s~c~~Af~~LR-------RssnlI  773 (843)
T KOG0906         718 DFGYILGRDPKPFPPPMKLA-------------KEMV---EGMGGA-ESKQYQEFRSYCYEAFLILR-------RSSNLI  773 (843)
T ss_pred             EEEEECCCCCCCCCCCCCCC-------------HHHH---HHHCCC-CHHHHHHHHHHHHHHHHHHH-------HHCCHH
T ss_conf             52223167999999843258-------------9999---985463-45889999999999999999-------852489


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             999975452797128889999999999884998768898889999999999998645968899999999999999
Q gi|254780623|r  380 TMLFEITELFDMMTRPELVMLQKTMVVVEGVARMLNPEFNMWVSSEPIVEEWIRDHLGAKSCVVDFQDGIKTAFR  454 (517)
Q Consensus       380 ~~l~~~~~~~~~~~P~~~~ll~r~l~~lEG~~~~LdP~~d~~~~~~p~~~~~l~~~~~p~~~~~~~~~~~~~~~~  454 (517)
                      ..++.++...++  | +               -+.||     +.+-+.+++.++-.++.+.....+.+.+.+.-.
T Consensus       774 lnLf~LM~~~~I--P-D---------------ia~dp-----~k~I~kvqeRfrLdmSde~A~~~fq~lI~~SV~  825 (843)
T KOG0906         774 LNLFSLMADANI--P-D---------------IAFDP-----NKAILKVQERFRLDMSDEAATKHFQKLINESVN  825 (843)
T ss_pred             HHHHHHHHCCCC--C-C---------------EEECC-----CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             999999822899--8-6---------------31170-----221699999870364678899999999998888


No 401
>KOG1165 consensus
Probab=95.39  E-value=0.04  Score=35.60  Aligned_cols=100  Identities=12%  Similarity=0.249  Sum_probs=63.1

Q ss_pred             HHCCCCCCCCCCCHHCCCHHCCC----CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHH--HHHHHHHHCCEECCCC
Q ss_conf             20244677664300001022178----33530024786324267733200225689999999--9999897448661787
Q gi|254780623|r  215 MAENTVKDQGFRVPKIDWNRTER----DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQ--SFLLHTLRDGFFHADL  288 (517)
Q Consensus       215 ~~~~~~~~~~v~vP~vy~~~st~----~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~--~~~~qi~~~GfFHaDP  288 (517)
                      +.+.+.+.  .-||.||  |-++    ++||||-+ |-++.|+-.+-......+.++-.-..  .-++-+-...+.--|-
T Consensus        76 ~YKlL~g~--~GIP~vY--YFGqeG~~NiLVidLL-GPSLEDLFD~CgR~FSvKTV~miA~Qmi~rie~vH~k~LIYRDI  150 (449)
T KOG1165          76 TYKLLGGT--EGIPQVY--YFGQEGKYNILVIDLL-GPSLEDLFDLCGRRFSVKTVAMIAKQMITRIEYVHEKDLIYRDI  150 (449)
T ss_pred             HHHHHCCC--CCCCCEE--EECCCCCHHHHHHHHH-CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCC
T ss_conf             99997289--9998146--5446641110224441-86789999985675407869999999999999887414154136


Q ss_pred             CCCEEEEECCC-----CEEEEECCHHEE-CCHHHHHH
Q ss_conf             86228980289-----535743403121-69899999
Q gi|254780623|r  289 HPGNLFVDSKG-----YIVAVDMGITGR-LSKRERRF  319 (517)
Q Consensus       289 HpGNi~v~~dg-----~i~~lDfG~vg~-l~~~~r~~  319 (517)
                      -|-|++|...|     .|-++||||+.. .||.++..
T Consensus       151 KPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~TkqH  187 (449)
T KOG1165         151 KPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKTKQH  187 (449)
T ss_pred             CCCCEEECCCCCCCCCEEEEEECCCHHHHCCCCCCCC
T ss_conf             7554565688998876689984432433048644566


No 402
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=95.26  E-value=0.29  Score=28.91  Aligned_cols=30  Identities=33%  Similarity=0.562  Sum_probs=24.9

Q ss_pred             CCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             178786228980289535743403121698
Q gi|254780623|r  285 HADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       285 HaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      =+|=|.||||++++|++.=||||-+=-.+|
T Consensus       145 IgDRHn~NImi~~~Ghl~HIDFGfiLg~~p  174 (293)
T cd05168         145 IKDRHNGNILIDNDGHIIHIDFGFMLSNSP  174 (293)
T ss_pred             CCCCCCCCEEECCCCCEEEEEHHHHHCCCC
T ss_conf             566578864788988899874245534588


No 403
>KOG0983 consensus
Probab=95.17  E-value=0.042  Score=35.49  Aligned_cols=144  Identities=22%  Similarity=0.324  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHH----HHHHHHHHHHHHHHH--HHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             6667788886555502128887236876403104----688777788999875--3211468543346917999999988
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGV----RKRFFRDIQVMYLIA--RIQEKLLPSMRRLCFSAVVRALEQV  198 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i----~~~i~~Dl~~l~~~~--~~~~~~~~~~~~~~~~~~~~e~~~~  198 (517)
                      .-++++|-|||-+++.+-  +|.-.|||-.|-.=    -++|-.|++++-.--  .++-+.++.. ..|..-       .
T Consensus        98 ~dlGsGtcG~V~k~~~rs--~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyF-i~n~dV-------~  167 (391)
T KOG0983          98 GDLGSGTCGQVWKMRFRS--TGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYF-ITNTDV-------F  167 (391)
T ss_pred             HHHCCCCCCCEEEEEECC--CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEE-EECCHH-------H
T ss_conf             750688755457888704--664899985215687788878987656776506997231134578-627609-------9


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             78886559999889872024467766430000102217833530024786324267733200225689999999999989
Q gi|254780623|r  199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT  278 (517)
Q Consensus       199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi  278 (517)
                      +-.|+    =+..++++-+..+..    ||              |+|-|. +              .++..-+-.|++  
T Consensus       168 IcMel----Ms~C~ekLlkrik~p----iP--------------E~ilGk-~--------------tva~v~AL~YLK--  208 (391)
T KOG0983         168 ICMEL----MSTCAEKLLKRIKGP----IP--------------ERILGK-M--------------TVAIVKALYYLK--  208 (391)
T ss_pred             HHHHH----HHHHHHHHHHHHCCC----CH--------------HHHHHH-H--------------HHHHHHHHHHHH--
T ss_conf             99999----999999999985188----62--------------776514-3--------------899999999987--


Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHH
Q ss_conf             744866178786228980289535743403121698999
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRER  317 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r  317 (517)
                      =.+|+.|-|-.|.||+++..|.|-+-|||+.|+|-+...
T Consensus       209 eKH~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSkA  247 (391)
T KOG0983         209 EKHGVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSKA  247 (391)
T ss_pred             HHCCEEECCCCCCCEEECCCCCEEEECCCCCCEEECCCC
T ss_conf             742515435672316773679877610444414421200


No 404
>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]
Probab=95.03  E-value=0.019  Score=38.15  Aligned_cols=34  Identities=32%  Similarity=0.472  Sum_probs=27.9

Q ss_pred             CEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             8661787862289802895357434031216989
Q gi|254780623|r  282 GFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       282 GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      =+-|+|.||||++.+++|++.+|||=-.|-=|+.
T Consensus       154 v~cH~Dl~~~N~l~t~~~~l~LIDWEyAg~~D~~  187 (269)
T COG0510         154 VPCHNDLNPGNLLLTDKGGLFLIDWEYAGLNDPA  187 (269)
T ss_pred             EEECCCCCCCCEEECCCCCEEEEECCCCCCCCHH
T ss_conf             4445789845057858996899961457776589


No 405
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=94.99  E-value=0.35  Score=28.36  Aligned_cols=155  Identities=16%  Similarity=0.169  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHHC---CCC-------CCCCCCCHHCCCHHCCCCEEEEECCCC-CCCCHHH--HHHHHCCC------
Q ss_conf             8655999988987202---446-------776643000010221783353002478-6324267--73320022------
Q gi|254780623|r  202 EMDLRLEAAAFSEMAE---NTV-------KDQGFRVPKIDWNRTERDVITMEWIDG-VKISDTE--KLRACGHD------  262 (517)
Q Consensus       202 ElD~~~Ea~n~~~~~~---~~~-------~~~~v~vP~vy~~~st~~VLvmE~i~G-~~i~d~~--~l~~~~~d------  262 (517)
                      --|.++|+..++-++-   .++       -+-+++.++|++  .+++.=++||++. .++..+-  ..+..+++      
T Consensus      1804 ~dDlRQD~~~~Ql~~l~n~iL~~~~~~~~R~l~i~~Y~Vip--ls~~~GiIe~vpn~~tl~sI~~~~~~~~~i~~~~~~~ 1881 (2105)
T COG5032        1804 GDDLRQDELALQLIRLMNKILKKDKETRRRDLWIRPYKVIP--LSPGSGIIEWVPNSDTLHSILREYHKRKNISIDQEKK 1881 (2105)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCEEEEEEEE--CCCCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             75132889999999999999985735421674224212786--2798665998469621999999985512888566766


Q ss_pred             ------------HHH----------------------------HH-HHHHHHHHHH-HHHCCEECCCCCCCEEEEEC-CC
Q ss_conf             ------------568----------------------------99-9999999998-97448661787862289802-89
Q gi|254780623|r  263 ------------LER----------------------------LS-VTLVQSFLLH-TLRDGFFHADLHPGNLFVDS-KG  299 (517)
Q Consensus       263 ------------~~~----------------------------la-~~l~~~~~~q-i~~~GfFHaDPHpGNi~v~~-dg  299 (517)
                                  +.+                            .+ .+.++++..+ +..+..==+|=|||||++++ +|
T Consensus      1882 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~f~~~~~w~~aR~Ny~~SlA~ySvigYiLglgDRH~~NIliD~~sG 1961 (2105)
T COG5032        1882 LAARLDNLKLLLKDEFFTKATLKSPPVLYDWFSESFPNPEDWLTARTNFARSLAVYSVIGYILGLGDRHPGNILIDRSSG 1961 (2105)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCC
T ss_conf             54667763334035676565237981577777771688457999999899999999999997048886777077886879


Q ss_pred             CEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHH
Q ss_conf             5357434031216989999999766999718727899999984126-677893689999998521001334333113568
Q gi|254780623|r  300 YIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYV-PRHHNRFSFAQAIRAIGEPIHGQSSDVISMGKL  378 (517)
Q Consensus       300 ~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~-~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~  378 (517)
                      +++-+|||-|                  ....          -|.. .|..-+-.+.+++.+.+......+.    +...
T Consensus      1962 ~viHiDFg~i------------------l~~~----------p~~~~~pE~vPFrLT~~iv~~mg~~g~EG~----Fr~~ 2009 (2105)
T COG5032        1962 HVIHIDFGFI------------------LFNA----------PGRFPFPEKVPFRLTRNIVEAMGVSGVEGS----FREL 2009 (2105)
T ss_pred             CEEEEEHHHH------------------HHCC----------CCCCCCCCCCCHHHHHHHHHHCCCCCCHHH----HHHH
T ss_conf             7898647879------------------7448----------877797665857654999987387652267----9999


Q ss_pred             HHHHHHHHHHCC
Q ss_conf             999997545279
Q gi|254780623|r  379 LTMLFEITELFD  390 (517)
Q Consensus       379 ~~~l~~~~~~~~  390 (517)
                      ....+...|++-
T Consensus      2010 c~~~~~~LRk~~ 2021 (2105)
T COG5032        2010 CETAFRALRKNA 2021 (2105)
T ss_pred             HHHHHHHHHCCH
T ss_conf             999999971068


No 406
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes,  including cell motility, the Ras pathway, vesicle trafficking and  secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=94.94  E-value=0.014  Score=39.06  Aligned_cols=85  Identities=16%  Similarity=0.119  Sum_probs=49.0

Q ss_pred             CCCCHHCCCHHCCCCEEEEECCCCCC-CCHH--HHHHHHCCCHH---HHHHHHHHHHHH-HHHHCCEECCCCCCCEEEEE
Q ss_conf             64300001022178335300247863-2426--77332002256---899999999999-89744866178786228980
Q gi|254780623|r  224 GFRVPKIDWNRTERDVITMEWIDGVK-ISDT--EKLRACGHDLE---RLSVTLVQSFLL-HTLRDGFFHADLHPGNLFVD  296 (517)
Q Consensus       224 ~v~vP~vy~~~st~~VLvmE~i~G~~-i~d~--~~l~~~~~d~~---~la~~l~~~~~~-qi~~~GfFHaDPHpGNi~v~  296 (517)
                      .+..++|++  .+++.=.+||+++.. +.++  +-+.....+..   ..-++.+.++.- .++.+-+-=+|-||+||+++
T Consensus        39 ~~~~y~vip--ls~~~GliE~v~~~~sl~~il~~~~~~~~~~~~~~~~~r~~F~~S~A~~s~~~yilglgDRH~~Nili~  116 (202)
T smart00146       39 HLRPYKVIP--TGPKSGLIEVVPNSTTLHQILYDWFKKKFPDPEDYFEARKNFTRSCAGYSVITYILGLGDRHNDNIMLD  116 (202)
T ss_pred             EEEEEEEEE--CCCCCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf             677447998--359960699818970099999999999883988999999999999999999999821688986637881


Q ss_pred             CCCCEEEEECCHHE
Q ss_conf             28953574340312
Q gi|254780623|r  297 SKGYIVAVDMGITG  310 (517)
Q Consensus       297 ~dg~i~~lDfG~vg  310 (517)
                      .+|+++=+|||.+=
T Consensus       117 ~~G~v~HIDfg~~~  130 (202)
T smart00146      117 KTGHLFHIDFGFIL  130 (202)
T ss_pred             CCCCEEEHHHHHHH
T ss_conf             89988842456664


No 407
>COG4857 Predicted kinase [General function prediction only]
Probab=94.72  E-value=0.037  Score=35.88  Aligned_cols=131  Identities=17%  Similarity=0.275  Sum_probs=76.0

Q ss_pred             HHHH-HHHHHHHHHHHHHH----HHHHHHHCCC--CC-CCCCCCHHCCCHHCCCCEEEEECCCCCCCCH-HHHHHHHCCC
Q ss_conf             9999-98878886559999----8898720244--67-7664300001022178335300247863242-6773320022
Q gi|254780623|r  192 VRAL-EQVTKMEMDLRLEA----AAFSEMAENT--VK-DQGFRVPKIDWNRTERDVITMEWIDGVKISD-TEKLRACGHD  262 (517)
Q Consensus       192 ~~e~-~~~l~~ElD~~~Ea----~n~~~~~~~~--~~-~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d-~~~l~~~~~d  262 (517)
                      +.|| ++++..-.|+..+-    ++...|. |-  .+ ....++-.+|-+--+.+-.. +   +  +.. ++.+ ..+.|
T Consensus       140 igeFlarTLf~~sDl~m~~k~kK~~vk~Ft-NpELCDItE~LVFtdPyfd~d~Nr~~~-~---~--l~~fVe~L-~~n~d  211 (408)
T COG4857         140 IGEFLARTLFRGSDLSMNTKDKKADVKLFT-NPELCDITENLVFTDPYFDADRNRHTI-P---Q--LDPFVEEL-RKNRD  211 (408)
T ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHHHHC-CCHHHCCHHCEEECCCCCCCCCCCCCC-C---C--CHHHHHHH-HCCCC
T ss_conf             999998888742652235076777788757-815414122024147544455453443-2---1--01899998-51862


Q ss_pred             HHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEE--CCHHEECCHHHHHHHHHHHHHHHCCCHH
Q ss_conf             5689999999999989744866178786228980289535743--4031216989999999766999718727
Q gi|254780623|r  263 LERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVD--MGITGRLSKRERRFLAEILYGFISRDYQ  333 (517)
Q Consensus       263 ~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lD--fG~vg~l~~~~r~~l~~l~~a~~~~D~~  333 (517)
                      .+--|.++-+.|+.  .-.-..|||.|.|-||+++.+ .-.||  |...|.+.=+.-.-+++++..+..++..
T Consensus       212 lkvea~kLk~~F~~--~aetLiHGDLHsGSIfvte~e-tkvIDPEFaFYGPmafDiG~~iaNl~~~~~s~~g~  281 (408)
T COG4857         212 LKVEAQKLKHKFMA--YAETLIHGDLHSGSIFVTEKE-TKVIDPEFAFYGPMAFDIGMLIANLWMSLFSQKGF  281 (408)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHCCCCCCCCEEEECCC-CEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCH
T ss_conf             44329999999987--767776066556717750476-34427411003740323989999999999854020


No 408
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and 
Probab=94.64  E-value=0.024  Score=37.36  Aligned_cols=44  Identities=25%  Similarity=0.424  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECC-HHEECCH
Q ss_conf             68999999999998974486617878622898028953574340-3121698
Q gi|254780623|r  264 ERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMG-ITGRLSK  314 (517)
Q Consensus       264 ~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG-~vg~l~~  314 (517)
                      +.+|---+-+|+-||       +|=|.||||++++|++.=|||| +.|.-+.
T Consensus       201 ~ScAGYcV~TYiLgI-------gDRHndNIml~~~GhlfHIDFG~iLg~~p~  245 (366)
T cd05175         201 RSCAGYCVATFILGI-------GDRHNSNIMVKDDGQLFHIDFGHFLDHKKK  245 (366)
T ss_pred             HHHHHHHHHHHHHCC-------CCCCCCCEEECCCCCEEEEECHHHHCCCCC
T ss_conf             987899999987024-------666788457989998999861265366988


No 409
>KOG2345 consensus
Probab=94.59  E-value=0.028  Score=36.83  Aligned_cols=104  Identities=15%  Similarity=0.253  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCHHCC------CHHCCCCEEEEE-CCCCCCCCHHHHHHHHCC--CHHHHHH--HHHHHH
Q ss_conf             99998898720244677664300001------022178335300-247863242677332002--2568999--999999
Q gi|254780623|r  206 RLEAAAFSEMAENTVKDQGFRVPKID------WNRTERDVITME-WIDGVKISDTEKLRACGH--DLERLSV--TLVQSF  274 (517)
Q Consensus       206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy------~~~st~~VLvmE-~i~G~~i~d~~~l~~~~~--d~~~la~--~l~~~~  274 (517)
                      .+|+.|.++|...+-      ++-+-      .|-+..--|+.- |-.|.-.+.+..++..|.  +-.++..  .++-.-
T Consensus        66 ~rEid~~rkf~s~~v------l~l~dh~l~~~~D~~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~g  139 (302)
T KOG2345          66 LREIDNHRKFNSPNV------LRLVDHQLREEKDGKHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRG  139 (302)
T ss_pred             HHHHHHHHHHCCCCH------HHHHHHHHHHHCCCCEEEEEEEEHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             999998875079306------88989998750367425899942421661999999876047725799999999999999


Q ss_pred             HHHHHHCC--EECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             99897448--661787862289802895357434031216989
Q gi|254780623|r  275 LLHTLRDG--FFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       275 ~~qi~~~G--fFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      ++++-..+  +-|.|.-|+||+...+|..++.|||.+...+-.
T Consensus       140 L~~lH~~~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~a~i~  182 (302)
T KOG2345         140 LEALHEKEPPYAHRDIKPANILLSDSGLPVLMDLGSATQAPIQ  182 (302)
T ss_pred             HHHHHCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCCEE
T ss_conf             9997363773101577733167448996479853676515567


No 410
>pfam10707 YrbL-PhoP_reg PhoP regulatory network protein YrbL. This is a family of proteins that are activated by PhoP. PhoP protein controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multicomponent loop in Salmonella where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner.
Probab=94.51  E-value=0.45  Score=27.51  Aligned_cols=157  Identities=20%  Similarity=0.214  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      .|+|.++-=-||   .|..+  ....|||.||+.....       +.-..|..++.|..       ..+    ..++|+.
T Consensus         7 ~~ia~G~~R~cy---~HP~d--~~~cIKV~~~~~~~~~-------~~~~~~~kk~~~~~-------~~~----~~~rE~~   63 (199)
T pfam10707         7 DLLAQGGQRLVY---AHPLD--ADLCIKVLRPANIAAR-------RRFKGWLKRLLPTS-------RYR----QNLRELK   63 (199)
T ss_pred             CEEECCCCEEEE---ECCCC--CCEEEEEECCCCHHHC-------CCCCHHHHHHCCCC-------CHH----HHHHHHH
T ss_conf             614058971596---78899--7818999552303320-------24431777646432-------057----8899999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECC---CCCCCCHHHH-HHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             5999988987202446776643000010221783--3530024---7863242677-33200225689999999999989
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWI---DGVKISDTEK-LRACGHDLERLSVTLVQSFLLHT  278 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i---~G~~i~d~~~-l~~~~~d~~~la~~l~~~~~~qi  278 (517)
                      +-..      .... ++..+-++|+.|----|.-  =+|+|.|   +|..--.++. +...+.+ .++ ...++.|.+-+
T Consensus        64 ~y~~------l~~r-~~~~~~~i~r~~G~veT~~G~G~v~elI~d~dG~~a~TL~~yl~~~~~~-~~i-~~aL~~f~~~l  134 (199)
T pfam10707        64 EYLR------LSKR-RGIDWSPIPRYYGFVETDLGLGLVTERIRDADGNISPTLEDLLKNGGLT-AAL-REALNEFKRYL  134 (199)
T ss_pred             HHHH------HHHC-CCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCHHHHHHCCCCC-HHH-HHHHHHHHHHH
T ss_conf             9999------8750-5995300244456886487147999988889979672389999718973-999-99999999999


Q ss_pred             HHCCEECCCCCCCEEEEEC--C--CCEEEEE-CCHHEECC
Q ss_conf             7448661787862289802--8--9535743-40312169
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDS--K--GYIVAVD-MGITGRLS  313 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~--d--g~i~~lD-fG~vg~l~  313 (517)
                      +.++..-.|++|+||.+..  +  .+++++| +|...-++
T Consensus       135 ~~~~Il~~dl~p~NIv~~~~~~~~~~lviIDGlG~~~~iP  174 (199)
T pfam10707       135 LDNHIVARDLNPHNIVYGRRSEGEYELVLVDGFGDPTLIP  174 (199)
T ss_pred             HHCCCEECCCCCCCEEEEECCCCCEEEEEEECCCCCCCCC
T ss_conf             9779477789846389997479966899997989712144


No 411
>KOG0579 consensus
Probab=94.49  E-value=0.15  Score=31.12  Aligned_cols=88  Identities=15%  Similarity=0.202  Sum_probs=53.8

Q ss_pred             CHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCE
Q ss_conf             000010221783--353002478632426773320022---568999999999998974486617878622898028953
Q gi|254780623|r  227 VPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHD---LERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYI  301 (517)
Q Consensus       227 vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d---~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i  301 (517)
                      |-+.|..|--++  .+..||+.|-.++.+-.--..+..   -..++...+++. .-+-...+.|-|..+|||+++-||.|
T Consensus        91 ivkLl~ayy~enkLwiliEFC~GGAVDaimlEL~r~LtE~QIqvvc~q~ldAL-n~LHs~~iIHRDLKAGNiL~TldGdi  169 (1187)
T KOG0579          91 IVKLLSAYYFENKLWILIEFCGGGAVDAIMLELGRVLTEDQIQVVCYQVLDAL-NWLHSQNIIHRDLKAGNILLTLDGDI  169 (1187)
T ss_pred             HHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-HHHHHCCHHHHHCCCCCEEEEECCCE
T ss_conf             98887777205744898863588407688987446666688999999999998-88764123331114563689724857


Q ss_pred             EEEECCHHEECCHH
Q ss_conf             57434031216989
Q gi|254780623|r  302 VAVDMGITGRLSKR  315 (517)
Q Consensus       302 ~~lDfG~vg~l~~~  315 (517)
                      -+-|||........
T Consensus       170 rLADFGVSAKn~~t  183 (1187)
T KOG0579         170 RLADFGVSAKNKST  183 (1187)
T ss_pred             EEECCCCCCCCHHH
T ss_conf             63003434121257


No 412
>KOG0696 consensus
Probab=94.47  E-value=0.15  Score=31.14  Aligned_cols=230  Identities=16%  Similarity=0.183  Sum_probs=110.0

Q ss_pred             HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             9867--66677888865555021288872368764031046887777889998753211468543346917999999988
Q gi|254780623|r  121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV  198 (517)
Q Consensus       121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  198 (517)
                      +.|+  .-++-+|.|-|-.|.-+ | +.+--||||.+-+|--+ ..|...     .+.++.+-.+.. .++     |-. 
T Consensus       349 tDFnFl~VlGKGSFGKVlLaerk-g-tdELyAiKiLkKDViiQ-dDDvec-----tm~EKrvLAL~~-kpp-----FL~-  413 (683)
T KOG0696         349 TDFNFLMVLGKGSFGKVLLAERK-G-TDELYAIKILKKDVIIQ-DDDVEC-----TMVEKRVLALPG-KPP-----FLV-  413 (683)
T ss_pred             CCCCEEEEECCCCCCEEEEECCC-C-CCHHHHHHHHCCCEEEE-CCCCCC-----EEHHHHHEECCC-CCC-----HHH-
T ss_conf             25304788616762306651126-8-50322200010234664-486422-----102333100589-996-----578-


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCC--CHH---HHHHHHHHH
Q ss_conf             788865599998898720244677664300001022178335300247863242677332002--256---899999999
Q gi|254780623|r  199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGH--DLE---RLSVTLVQS  273 (517)
Q Consensus       199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~--d~~---~la~~l~~~  273 (517)
                                     ++..-|...+.++             .||||+.|--+--  .+...|-  ++.   .-|+.-+..
T Consensus       414 ---------------qlHScFQTmDRLy-------------FVMEyvnGGDLMy--hiQQ~GkFKEp~AvFYAaEiaigL  463 (683)
T KOG0696         414 ---------------QLHSCFQTMDRLY-------------FVMEYVNGGDLMY--HIQQVGKFKEPVAVFYAAEIAIGL  463 (683)
T ss_pred             ---------------HHHHHHHHHHHEE-------------EEEEEECCCHHHH--HHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             ---------------8888753221326-------------5788724741506--898755647732202258887776


Q ss_pred             HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEE--CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCH
Q ss_conf             99989744866178786228980289535743403121--6989999999766999718727899999984126677893
Q gi|254780623|r  274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR--LSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNR  351 (517)
Q Consensus       274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~--l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~  351 (517)
                      |+  +-..|..--|..--|+|++.+|.|-+.||||+.+  .+..+...+.      .+-||  ++-.++.---....+|-
T Consensus       464 FF--Lh~kgIiYRDLKLDNvmLd~eGHiKi~DFGmcKEni~~~~TTkTFC------GTPdY--iAPEIi~YqPYgksvDW  533 (683)
T KOG0696         464 FF--LHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIFDGVTTKTFC------GTPDY--IAPEIIAYQPYGKSVDW  533 (683)
T ss_pred             HH--HHCCCEEEEECCCCCEEECCCCCEEEEECCCCCCCCCCCCCEEEEC------CCCCC--CCCCEEEECCCCCCHHH
T ss_conf             53--2027716640321206763678567613364202466883013203------88754--66315774466652127


Q ss_pred             HHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf             68999999852100133433311356899999754527971288899999999998
Q gi|254780623|r  352 FSFAQAIRAIGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVV  407 (517)
Q Consensus       352 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~~~ll~r~l~~l  407 (517)
                      =.|---+.+++.  ...|++.-+-.++++.+.+---.|+-.+..|-+-+.|+++|-
T Consensus       534 Wa~GVLLyEmla--GQpPFdGeDE~elF~aI~ehnvsyPKslSkEAv~ickg~ltK  587 (683)
T KOG0696         534 WAFGVLLYEMLA--GQPPFDGEDEDELFQAIMEHNVSYPKSLSKEAVAICKGLLTK  587 (683)
T ss_pred             HHHHHHHHHHHC--CCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             888999999975--899989977799999998705767610049999999888615


No 413
>KOG0586 consensus
Probab=94.43  E-value=0.03  Score=36.60  Aligned_cols=182  Identities=19%  Similarity=0.176  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             67666778888655550212888723687640310468877778899987532114685433469179999999887888
Q gi|254780623|r  123 FDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME  202 (517)
Q Consensus       123 fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E  202 (517)
                      +..-|+++.-|-|--|+-.+  +|.+||+|+..-.                           ..+......     +   
T Consensus        60 i~~tig~g~f~~V~La~~~~--t~~~VaiK~idkt---------------------------~ln~~~~~k-----~---  102 (596)
T KOG0586          60 IIKTIGKGNFAKVKLARHIL--TGTEVAIKIIDKT---------------------------QLNPSKRQK-----L---  102 (596)
T ss_pred             EEEEECCCEEEEEEEEEECC--CCCEEEEEEEHHC---------------------------CCCHHHHHH-----H---
T ss_conf             42101264057777667418--8862788871000---------------------------247377888-----8---


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH--
Q ss_conf             655999988987202446776643000010221783--3530024786324267733200225689999999999989--
Q gi|254780623|r  203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT--  278 (517)
Q Consensus       203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi--  278 (517)
                         .+|.+-|...     +.|.  |=++|..+.|+.  .|||||.-|.-+-|  -+.+.|.+.+..|    +.+|.|+  
T Consensus       103 ---~rev~imk~l-----~HPn--Ivkl~~v~~t~~~lylV~eya~~ge~~~--yl~~~gr~~e~~a----r~~F~q~vs  166 (596)
T KOG0586         103 ---GREVDIMKSL-----NHPN--IVKLFSVIETEATLYLVMEYASGGELFD--YLVKHGRMKEKEA----RAKFRQIVS  166 (596)
T ss_pred             ---HHHHHHHHHC-----CCCC--EEEEEEEEEECCEEEEEEEECCCCHHHH--HHHHCCCCHHHHH----HHHHHHHHH
T ss_conf             ---9999998714-----8832--0123324420561589999505721789--9986164013566----666677888


Q ss_pred             -----HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf             -----744866178786228980289535743403121698999999976699971872789999998412667789368
Q gi|254780623|r  279 -----LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFS  353 (517)
Q Consensus       279 -----~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~  353 (517)
                           -.+++.|.|.|+-|++++.+-.+=+-|||.-..++..      .++....---...+-+.+.......+.+|.-.
T Consensus       167 aveYcH~k~ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~~------~~lqt~cgsppyAaPEl~~g~~y~gpe~D~Ws  240 (596)
T KOG0586         167 AVEYCHSKNIVHRDLKAENILLDENMNIKIADFGFSTFFDYG------LMLQTFCGSPPYAAPELFNGKKYDGPEVDIWS  240 (596)
T ss_pred             HHHHHHHCCEECCCCCHHHCCCCCCCCEEEECCCCCEEECCC------CCCCCCCCCCCCCCHHHHCCCCCCCCCEEHHH
T ss_conf             999875314434655365424455455145124431032222------10135678987567676467646775300141


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999998521
Q gi|254780623|r  354 FAQAIRAIGE  363 (517)
Q Consensus       354 ~~~~i~~~~~  363 (517)
                      +...+..++.
T Consensus       241 lgvvly~LV~  250 (596)
T KOG0586         241 LGVVLYALVE  250 (596)
T ss_pred             HHHHHEEEEE
T ss_conf             3212400121


No 414
>TIGR01767 MTRK 5-methylthioribose kinase; InterPro: IPR009212   Members of this family are 5-methylthioribose kinases (2.7.1.100 from EC) that catalyse phosphorylation of 5-methylthioribose (MTR), a step in the recycling of methionine from 5'-methylthioadenosine, a co-product of polyamine biosynthesis. The preceding step of methylthioadenosine (MTA) hydrolysis to MTR is catalysed by 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/AdoHcy) nucleosidase (PIRSF006618 from PIRSF).   Bacillus subtilis MtnK (formerly YkrT) and Klebsiella pneumoniae MtrK  have been experimentally characterised. Klebsiella pneumoniae MtrK expression is regulated by methionine .   As this enzyme is absent in mammals, it has been considered a target for rational drug design.; GO: 0046522 S-methyl-5-thioribose kinase activity, 0009086 methionine biosynthetic process.
Probab=94.40  E-value=0.1  Score=32.52  Aligned_cols=198  Identities=20%  Similarity=0.294  Sum_probs=125.2

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEEC--CHHHHHHHHHHHHHHHHHHH---HCCCCCCCC
Q ss_conf             4047889999998676667788886555502128887236876403--10468877778899987532---114685433
Q gi|254780623|r  110 SALKAPIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIR--PGVRKRFFRDIQVMYLIARI---QEKLLPSMR  184 (517)
Q Consensus       110 ~elg~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~r--P~i~~~i~~Dl~~l~~~~~~---~~~~~~~~~  184 (517)
                      +.|.-+++.-  .||   ++|=|+|--++=        ..|+||=|  |+..-.|.+||.-=..++|-   -....|...
T Consensus        37 eSWPLtldRa--r~E---~~aL~rq~~h~P--------~~vp~i~hfD~e~Av~vMEdLs~Ph~I~R~~LI~g~~yP~~a  103 (386)
T TIGR01767        37 ESWPLTLDRA--RLE---ASALVRQEEHAP--------QLVPKIYHFDEELAVIVMEDLSDPHKILRKELIEGEQYPQLA  103 (386)
T ss_pred             CCCCCHHHHH--HHH---HHHHHHHHHCCC--------CCCCEEEEECCCCEEEHHHHCCCHHHHHHHHHHCCCCCHHHH
T ss_conf             7688626789--998---999886430378--------873337861686301020231615789987763243113899


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf             46917999999988788865599998898720244677-------66430000102217833530024786324267733
Q gi|254780623|r  185 RLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKD-------QGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLR  257 (517)
Q Consensus       185 ~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~-------~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~  257 (517)
                      +    .+-+=++++|..-=||..+-+.-+.-=+.|.++       ..+.+-.||-+.-+.+- .-| ++    ++++.|.
T Consensus       104 r----~iG~fla~tLF~~SD~~l~pk~kKa~va~F~nnpelCdITE~LvF~DPyfdh~~N~~-~~e-L~----~~Va~Lr  173 (386)
T TIGR01767       104 R----DIGEFLAKTLFRSSDYALEPKEKKADVAQFINNPELCDITEDLVFSDPYFDHERNDY-EEE-LE----AVVAELR  173 (386)
T ss_pred             H----HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHCCCC-CHH-HH----HHHHHHH
T ss_conf             9----998998888620255321754778899863178334445453004885100112688-143-43----8999860


Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEE--CCHHEECCHHHHHHHHHHHHHHHCCCHHH
Q ss_conf             200225689999999999989744866178786228980289535743--40312169899999997669997187278
Q gi|254780623|r  258 ACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVD--MGITGRLSKRERRFLAEILYGFISRDYQR  334 (517)
Q Consensus       258 ~~~~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lD--fG~vg~l~~~~r~~l~~l~~a~~~~D~~~  334 (517)
                      .. .+.|-=|.+|=+.|+..-  .-..|||.|.|-|||. ++.+=.||  ||--|-+.=+.=..++++++....+++..
T Consensus       174 ~d-~~lK~eaa~LK~~F~a~A--EtLlHGDlHsGSIfv~-e~etk~IDpEFafyGPigFDiG~~iaNl~ln~~s~~G~~  248 (386)
T TIGR01767       174 DD-ADLKVEAAKLKHSFLASA--ETLLHGDLHSGSIFVA-ETETKVIDPEFAFYGPIGFDIGTLIANLLLNFLSRDGAE  248 (386)
T ss_pred             CC-CHHHHHHHHHHHHHHHHH--HHHHCCCHHCCCEEEE-CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             59-512299999757877412--5774042102524353-473011145311317607789999999999852889866


No 415
>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]
Probab=94.36  E-value=0.056  Score=34.50  Aligned_cols=202  Identities=15%  Similarity=0.078  Sum_probs=101.8

Q ss_pred             CCCCHHHHHHHHH-HHCCCCHHHH-HHHHHH-HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             7899899999875-4047889999-998676-667788886555502128887236876403104688777788999875
Q gi|254780623|r   97 DFFPTNTARLSVA-SALKAPIEEL-YCEFDD-PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIA  173 (517)
Q Consensus        97 pp~~~~~v~~~ie-~elg~~~~~~-F~~fde-PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~  173 (517)
                      .--|....-+.++ +.-|++...+ |..+++ |+.-++.+-++.|++.+.++--..+.++--|+..  ...|-.+++.+.
T Consensus       129 k~k~sh~slqk~k~rrk~~~sQ~~ns~~kk~~pvpDqvs~dk~Q~k~~~stsl~~l~s~~~l~~n~--~d~d~~nl~QI~  206 (488)
T COG5072         129 KHKPSHRSLQKVKQRRKGPFSQFVNSQTKKICPVPDQVSSDKIQAKLADSTSLVSLVSPFGLPGNA--QDADVLNLVQIL  206 (488)
T ss_pred             CCCCHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCC--CCCCHHHHHHHH
T ss_conf             457047899988876028730000366655456863101434430112576301013545678873--222358899999


Q ss_pred             HHHC--CC---------CCCCCCCCHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHCCCCCCC
Q ss_conf             3211--46---------854334691799999998878886559-------------------99988987202446776
Q gi|254780623|r  174 RIQE--KL---------LPSMRRLCFSAVVRALEQVTKMEMDLR-------------------LEAAAFSEMAENTVKDQ  223 (517)
Q Consensus       174 ~~~~--~~---------~~~~~~~~~~~~~~e~~~~l~~ElD~~-------------------~Ea~n~~~~~~~~~~~~  223 (517)
                      .+..  .+         .|....+++++. ..+.....+|+++.                   .|....+...-.+.+.+
T Consensus       207 q~~dvk~fan~~~v~~vlgl~~~ln~~~s-~qlssn~~q~~i~kkvs~g~~~~~~~d~~fls~~ele~l~L~qw~~~g~~  285 (488)
T COG5072         207 QWCDVKGFANLHQVVVVLGLYPSLNLEES-DQLSSNNWQENICKKVSLGSTQDYTVDCLFLSLTELEHLELRQWRECGSV  285 (488)
T ss_pred             HHHHHHHHCCCCCEEEEECCCCCCCCHHH-HHHHHHCCHHEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCH
T ss_conf             88516654364413688526665565035-67765333110411214664001212113320132324666520211604


Q ss_pred             CCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HHHHH--HCCEECCCCCCCEEEEEC
Q ss_conf             64300001022178--3353002478632426773320022568999999999--99897--448661787862289802
Q gi|254780623|r  224 GFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSF--LLHTL--RDGFFHADLHPGNLFVDS  297 (517)
Q Consensus       224 ~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~--~~qi~--~~GfFHaDPHpGNi~v~~  297 (517)
                      ..--|.||. +-..  -+++|++ .|.+++-+...+     -++... .+...  +--+.  ..-|=|-|.|-|||+++ 
T Consensus       286 ~~e~~~vv~-~de~~y~yl~~kd-hgt~is~ik~~~-----~~e~ls-ff~s~~sil~~lekkf~fehrnlt~~niLId-  356 (488)
T COG5072         286 FLETLKVVS-LDETLYLYLHFKD-HGTPISIIKADR-----SEEELS-FFWSCISILDILEKKFPFEHRNLTLDNILID-  356 (488)
T ss_pred             HHHCCEEEE-CCCCEEEEEEEEC-CCCEEEEEECCC-----HHHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE-
T ss_conf             442314772-4782699999705-896023231103-----799999-9998888876655338763245653322340-


Q ss_pred             CCCEEEEECCHHE
Q ss_conf             8953574340312
Q gi|254780623|r  298 KGYIVAVDMGITG  310 (517)
Q Consensus       298 dg~i~~lDfG~vg  310 (517)
                      .|.+.+|||-+..
T Consensus       357 ~GnvtLIDfklsR  369 (488)
T COG5072         357 EGNVTLIDFKLSR  369 (488)
T ss_pred             CCCEEEEEEEEEE
T ss_conf             5854899866530


No 416
>PRK11768 serine/threonine protein kinase; Provisional
Probab=94.33  E-value=0.02  Score=37.99  Aligned_cols=156  Identities=18%  Similarity=0.213  Sum_probs=68.3

Q ss_pred             HHHHHEECCCCCCEEEEEEECCH--HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH-HHHHHHH--------HHHHH--
Q ss_conf             55550212888723687640310--46887777889998753211468543346917-9999999--------88788--
Q gi|254780623|r  135 VHPAVVHDINGYRKVAVKIIRPG--VRKRFFRDIQVMYLIARIQEKLLPSMRRLCFS-AVVRALE--------QVTKM--  201 (517)
Q Consensus       135 Vh~A~l~d~~~g~~VaVKV~rP~--i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~-~~~~e~~--------~~l~~--  201 (517)
                      ||.-.+-|   +..||+|.=|||  -.++|..+-+-..-++..   =+|....+.+. +.+-++.        +.--+  
T Consensus        41 VYQvg~Ed---~~~~VaKFYRP~RWS~~QIlEEH~F~~eL~~~---EIPVVaPl~~~G~TL~~~~Gf~fAlfpr~gGrap  114 (326)
T PRK11768         41 VYQFGDED---GRRVVAKFYRPERWSDAQILEEHQFALELAEA---EIPVVAPLAFNGETLHEHQGFRFALFPRRGGRAP  114 (326)
T ss_pred             EEEEEECC---CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHC---CCCCCCCEEECCCCHHHCCCEEEEEECCCCCCCC
T ss_conf             16864248---98479985188878889999999999999976---9981387523872010008989998514368798


Q ss_pred             HH----HHHHHHHHHHHHH-----CCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             86----5599998898720-----24467766430000102217833530024786324267733200225689999999
Q gi|254780623|r  202 EM----DLRLEAAAFSEMA-----ENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQ  272 (517)
Q Consensus       202 El----D~~~Ea~n~~~~~-----~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~  272 (517)
                      |+    ++..=++.+-|+.     +.|+..+.+-+-.. -.-+-+-++.-.||+.       .++.   ....+++.++.
T Consensus       115 Eldn~d~L~~lGr~lgRiH~vG~~~~f~hRp~l~~~~~-~~~~~~~L~~~~~iP~-------~l~~---~y~~~~~~ll~  183 (326)
T PRK11768        115 ELDNLDQLEWVGRFLGRIHQVGATRPFEHRPTLDLQEY-GHEPRQWLLDSDLIPS-------SLRP---AYLSAADQLLA  183 (326)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH-HHHHHHHHHHCCCCCH-------HHHH---HHHHHHHHHHH
T ss_conf             98987999999999999998601478854766788888-8889999986698898-------9999---99999999999


Q ss_pred             HHHHHHHHCC----EECCCCCCCEEEEECCCCEEEEECCH
Q ss_conf             9999897448----66178786228980289535743403
Q gi|254780623|r  273 SFLLHTLRDG----FFHADLHPGNLFVDSKGYIVAVDMGI  308 (517)
Q Consensus       273 ~~~~qi~~~G----fFHaDPHpGNi~v~~dg~i~~lDfG~  308 (517)
                      ..-.+.-...    =.|||.|||||+..+| ...|+||-=
T Consensus       184 ~v~~~~~~~~~~~iRlHGDCH~GNILwrdd-~p~fVDfDD  222 (326)
T PRK11768        184 AVEAHWARAPFRLLRLHGDCHPGNILWTDD-GPHFVDLDD  222 (326)
T ss_pred             HHHHHHCCCCCCEEEEECCCCCCCCCCCCC-CCEEEECCC
T ss_conf             999985218852244106767554113289-864874400


No 417
>KOG1035 consensus
Probab=94.32  E-value=0.08  Score=33.28  Aligned_cols=196  Identities=17%  Similarity=0.233  Sum_probs=95.3

Q ss_pred             CCHHHHHHHHHH--HHHHHHHHHHHHHHEECCCCCCEEEEEEEC-CHHHHHHHHHHHHHHHHHHHHC--------CCCCC
Q ss_conf             889999998676--667788886555502128887236876403-1046887777889998753211--------46854
Q gi|254780623|r  114 APIEELYCEFDD--PIAAASIAQVHPAVVHDINGYRKVAVKIIR-PGVRKRFFRDIQVMYLIARIQE--------KLLPS  182 (517)
Q Consensus       114 ~~~~~~F~~fde--PlasASiaQVh~A~l~d~~~g~~VaVKV~r-P~i~~~i~~Dl~~l~~~~~~~~--------~~~~~  182 (517)
                      ......+.+|+|  +++-|--|+|++++=+=  .|++-|||=.+ +.-.......++=.+.+|++-.        .|+..
T Consensus       472 r~~SRY~~DFEEL~lLGkGGFG~VvkVRNKl--DGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs  549 (1351)
T KOG1035         472 RQFSRYLNDFEELELLGKGGFGSVVKVRNKL--DGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVES  549 (1351)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCEEEEEEECC--CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCC
T ss_conf             1024576664899872577775279986426--65101100125756777889999999998623786534311334304


Q ss_pred             CCCCCHHHHHHHHHHH------HHHHHHHHHHHH------HHHHHHCCCCCCCCCCCHHC-C------------------
Q ss_conf             3346917999999988------788865599998------89872024467766430000-1------------------
Q gi|254780623|r  183 MRRLCFSAVVRALEQV------TKMEMDLRLEAA------AFSEMAENTVKDQGFRVPKI-D------------------  231 (517)
Q Consensus       183 ~~~~~~~~~~~e~~~~------l~~ElD~~~Ea~------n~~~~~~~~~~~~~v~vP~v-y------------------  231 (517)
                      .....-.+++..-...      ..++.|...+..      +.....++..+...-+.|+. .                  
T Consensus       550 ~~~~~~~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~  629 (1351)
T KOG1035         550 TAELTVLEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRN  629 (1351)
T ss_pred             CCCCCCCCCCCCCHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             77655444223535553046777554203324678865676421025667655334653224666678531000003334


Q ss_pred             -------------------------CHHCCCC----------EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             -------------------------0221783----------35300247863242677332002256899999999999
Q gi|254780623|r  232 -------------------------WNRTERD----------VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLL  276 (517)
Q Consensus       232 -------------------------~~~st~~----------VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~  276 (517)
                                               .+-|.+.          -+=|||++-....++-.-...+. ....+-++++-.+.
T Consensus       630 ~S~tS~~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~~~-~~d~~wrLFreIlE  708 (1351)
T KOG1035         630 LSNTSDSEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHFNS-QRDEAWRLFREILE  708 (1351)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHH
T ss_conf             56532347764457625555413355776665531224438988775436669999987235320-26799999999999


Q ss_pred             ---HHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC
Q ss_conf             ---897448661787862289802895357434031216
Q gi|254780623|r  277 ---HTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL  312 (517)
Q Consensus       277 ---qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l  312 (517)
                         -|-.-|..|=|.-|.|||+++++.+.+-|||....+
T Consensus       709 GLaYIH~~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~  747 (1351)
T KOG1035         709 GLAYIHDQGIIHRDLKPRNIFLDSRNSVKIGDFGLATDL  747 (1351)
T ss_pred             HHHHHHHCCEEECCCCCCEEEECCCCCEEECCCCCCHHH
T ss_conf             999987374341367754267758898001663220336


No 418
>KOG1027 consensus
Probab=94.32  E-value=0.13  Score=31.77  Aligned_cols=126  Identities=16%  Similarity=0.206  Sum_probs=71.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHH
Q ss_conf             33469179999999887888655999988987202446---776643000010221783353002478632426773320
Q gi|254780623|r  183 MRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTV---KDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRAC  259 (517)
Q Consensus       183 ~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~---~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~  259 (517)
                      .|.+-...++.|+.....+|++..+|-.+....=+.|.   +....+|   --|+|..+  -.+|++.- ..|.+  ...
T Consensus       533 ~R~VAVKrll~e~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YI---alELC~~s--L~dlie~~-~~d~~--~~~  604 (903)
T KOG1027         533 GREVAVKRLLEEFFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYI---ALELCACS--LQDLIESS-GLDVE--MQS  604 (903)
T ss_pred             CCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEE---EEHHHHHH--HHHHHHCC-CCCHH--HCC
T ss_conf             922059988667678999999988751579863789763157865899---80575610--99998423-10012--125


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEEC---CC--CEEEEECCHHEECCHHHH
Q ss_conf             02256899999999999897448661787862289802---89--535743403121698999
Q gi|254780623|r  260 GHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDS---KG--YIVAVDMGITGRLSKRER  317 (517)
Q Consensus       260 ~~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~---dg--~i~~lDfG~vg~l~~~~r  317 (517)
                      .+++..+....+.. +..+---|..|-|.-|.||+|..   +|  +..+=|||.+.+++....
T Consensus       605 ~i~~~~~l~q~~~G-laHLHsl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~s  666 (903)
T KOG1027         605 DIDPISVLSQIASG-LAHLHSLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGKS  666 (903)
T ss_pred             CCCHHHHHHHHHHH-HHHHHHCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf             41289999999888-888775252104678734899714788625689604652013689941


No 419
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=94.30  E-value=0.03  Score=36.63  Aligned_cols=29  Identities=31%  Similarity=0.614  Sum_probs=24.7

Q ss_pred             CCCCCCEEEEECCCCEEEEECC-HHEECCH
Q ss_conf             7878622898028953574340-3121698
Q gi|254780623|r  286 ADLHPGNLFVDSKGYIVAVDMG-ITGRLSK  314 (517)
Q Consensus       286 aDPHpGNi~v~~dg~i~~lDfG-~vg~l~~  314 (517)
                      +|=|.||||++++|++.=|||| +.|..++
T Consensus       217 gDRHndNIml~~~GhlfHIDFG~iLG~~~~  246 (366)
T cd05165         217 GDRHNDNIMVKETGQLFHIDFGHILGNYKS  246 (366)
T ss_pred             CCCCCCCEEECCCCCEEEEEHHHHHCCCCC
T ss_conf             666788456889999999863466367887


No 420
>KOG0666 consensus
Probab=94.25  E-value=0.096  Score=32.67  Aligned_cols=187  Identities=18%  Similarity=0.233  Sum_probs=103.8

Q ss_pred             CHHHHHHHHH-HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf             8999999867-666778888655550212888723687640310468877778899987532114685433469179999
Q gi|254780623|r  115 PIEELYCEFD-DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVR  193 (517)
Q Consensus       115 ~~~~~F~~fd-ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~  193 (517)
                      .++.+|..-- .-|+++.-|-||+|+-++.+.-+               ..+.+ ++.+    +. ......        
T Consensus        19 rve~l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr---------------~k~yA-iKkf----k~-~kd~tG--------   69 (438)
T KOG0666          19 RVEDLFEYEGIGKIGRGTYGKVYKAVRKNTNDKR---------------TKEYA-IKKF----KG-EKDGTG--------   69 (438)
T ss_pred             HHHHHHHHHCCCEECCCCCCEEEEEEECCCCCCC---------------CHHHH-HHHH----HC-CCCCCC--------
T ss_conf             4788876303231246654125662005687533---------------21668-9887----25-567787--------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             99988788865599998898720244677664300001022178335300247863242677332002256899999999
Q gi|254780623|r  194 ALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQS  273 (517)
Q Consensus       194 e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~  273 (517)
                       ++.+--+|+-+.+|.+|          ..-|..-+|+-..-..--|+.||-+-- +-.+-..+.... .+.+-..++++
T Consensus        70 -iS~SAcREiaL~REl~h----------~nvi~Lv~Vfl~~d~~v~l~fdYAEhD-L~~II~fHr~~~-~~~lp~~mvKs  136 (438)
T KOG0666          70 -ISMSACREIALLRELKH----------PNVISLVKVFLSHDKKVWLLFDYAEHD-LWHIIKFHRASK-AKQLPRSMVKS  136 (438)
T ss_pred             -CCHHHHHHHHHHHHHCC----------CCEEEHHHHHHCCCCEEEEEEHHHHHH-HHHHHHHHCCCH-HCCCCHHHHHH
T ss_conf             -18999999999987528----------761006677622674499982144406-999998742310-02388889999


Q ss_pred             HHHHHHH-------CCEECCCCCCCEEEEECC----CCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCH------HHHH
Q ss_conf             9998974-------486617878622898028----9535743403121698999999976699971872------7899
Q gi|254780623|r  274 FLLHTLR-------DGFFHADLHPGNLFVDSK----GYIVAVDMGITGRLSKRERRFLAEILYGFISRDY------QRVA  336 (517)
Q Consensus       274 ~~~qi~~-------~GfFHaDPHpGNi~v~~d----g~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~------~~~~  336 (517)
                      .++|++.       +=+.|-|.-|.||+|+-|    |++-+-|+|..        +.+.+.+.-+.+.|.      .++-
T Consensus       137 ilwQil~Gv~YLH~NWvlHRDLKPaNIlvmgdgperG~VKIaDlGla--------R~~~~plkpl~s~d~VVVTiWYRAP  208 (438)
T KOG0666         137 ILWQILDGVHYLHSNWVLHRDLKPANILVMGDGPERGRVKIADLGLA--------RLFNNPLKPLASLDPVVVTIWYRAP  208 (438)
T ss_pred             HHHHHHHHHHHHHHCCEEECCCCCCEEEEECCCCCCCEEEEECCCHH--------HHHHCCCCCCCCCCCEEEEEEECCH
T ss_conf             99999733678763201133677110799535776672686131178--------8762514321148966999981386


Q ss_pred             HHHHHHHCCCCCCCH
Q ss_conf             999984126677893
Q gi|254780623|r  337 DVHFEAGYVPRHHNR  351 (517)
Q Consensus       337 ~~l~~lg~~~~~~d~  351 (517)
                      +.++..-..++.+|.
T Consensus       209 ELLLGa~hYT~AiDv  223 (438)
T KOG0666         209 ELLLGARHYTKAIDV  223 (438)
T ss_pred             HHHCCCCCCCCHHHH
T ss_conf             876055445425566


No 421
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=94.04  E-value=0.036  Score=36.03  Aligned_cols=38  Identities=24%  Similarity=0.410  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHH
Q ss_conf             899999999999897448661787862289802895357434031
Q gi|254780623|r  265 RLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGIT  309 (517)
Q Consensus       265 ~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~v  309 (517)
                      .+|.--+-+|+-|       =+|=|.||||++++|++.=||||-+
T Consensus       199 ScAgYcV~TYvLg-------IgDRHndNIml~~~GhlfHIDFG~i  236 (362)
T cd05173         199 SCAGYCVATYVLG-------IGDRHSDNIMVRKNGQLFHIDFGHI  236 (362)
T ss_pred             HHHHHHHHHHHHC-------CCCCCCCCEEECCCCEEEEEECHHH
T ss_conf             8888999998602-------4666788557989873999874565


No 422
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the 
Probab=93.97  E-value=0.044  Score=35.34  Aligned_cols=83  Identities=18%  Similarity=0.125  Sum_probs=46.8

Q ss_pred             CCCCCHHCCCHHCCCCEEEEECCCCCCC-CHH--HHHHHHCCC-------HHHHHHHHHHHHHHHHHHCCEECCCCCCCE
Q ss_conf             6643000010221783353002478632-426--773320022-------568999999999998974486617878622
Q gi|254780623|r  223 QGFRVPKIDWNRTERDVITMEWIDGVKI-SDT--EKLRACGHD-------LERLSVTLVQSFLLHTLRDGFFHADLHPGN  292 (517)
Q Consensus       223 ~~v~vP~vy~~~st~~VLvmE~i~G~~i-~d~--~~l~~~~~d-------~~~la~~l~~~~~~qi~~~GfFHaDPHpGN  292 (517)
                      -.+..++|.+  .++++=..||++|..- .+.  ..+.....+       ++..+..++-..   +..+=+-=+|=||+|
T Consensus        65 l~~~~y~vip--ls~~~gliE~v~~~~tl~~~l~~~~~~~~~~~~~~~~~r~~F~~S~A~~s---v~~yvlgigDRH~~N  139 (219)
T cd00142          65 LFLTTYSVIP--LSPRSGLIEVVPGSVTLEDDLSKWLKRKSPDEDEWQEARENFISSLAGYS---VAGYILGIGDRHPDN  139 (219)
T ss_pred             EEEEEEEEEE--ECCCCEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH---HHHHHEECCCCCCCC
T ss_conf             4887016998--07982589987997408999999999888397999999999999999999---999831326899871


Q ss_pred             EEEEC-CCCEEEEECCHHE
Q ss_conf             89802-8953574340312
Q gi|254780623|r  293 LFVDS-KGYIVAVDMGITG  310 (517)
Q Consensus       293 i~v~~-dg~i~~lDfG~vg  310 (517)
                      |+++. +|+++-+|||.+-
T Consensus       140 Ili~~~tG~v~hIDFg~~f  158 (219)
T cd00142         140 IMIDLDTGKLFHIDFGFIF  158 (219)
T ss_pred             EEEECCCCCEEEEEEHHHH
T ss_conf             8898388869999525542


No 423
>PTZ00296 choline kinase; Provisional
Probab=93.88  E-value=0.59  Score=26.59  Aligned_cols=220  Identities=13%  Similarity=0.155  Sum_probs=92.4

Q ss_pred             HHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHH-HHH-HHHHHHHHHHHHHHHEECCC------CC
Q ss_conf             71004598899999998874887899899999875404788999999-867-66677888865555021288------87
Q gi|254780623|r   75 ATRPDLIGKKLSEDLALLQDKMDFFPTNTARLSVASALKAPIEELYC-EFD-DPIAAASIAQVHPAVVHDIN------GY  146 (517)
Q Consensus        75 stR~Dllp~~~~~eL~~Lqd~vpp~~~~~v~~~ie~elg~~~~~~F~-~fd-ePlasASiaQVh~A~l~d~~------~g  146 (517)
                      +..-|+  |.-++|++.|.|..      .++.+-.+.. ..|..+=. .+. .-|-||---|.....|...+      -.
T Consensus        66 ~~~~~~--~~~~~~fs~l~~p~------~i~~~c~~~v-~~w~~~~~~~~~v~qi~~gltnqlf~v~~~~~~~~~~~~~~  136 (439)
T PTZ00296         66 NKKNDI--PLCAQEFSDLTDPL------YIKKICLEKV-HDWHHCNEDDLCVKQILSGLTNQLFEVGIKEDTAIEYHIIR  136 (439)
T ss_pred             CCCCCC--CCHHHHHHHCCCCH------HHHHHHHHHC-CCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCC
T ss_conf             056787--50377777436709------8999998528-87455887783399987421352289986314454565401


Q ss_pred             CEEEEEEECCHHHHHHHHHHH--HHHHHHHHHCCCCCCCCCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHC
Q ss_conf             236876403104688777788--999875321146854334691799999998-------87888655999988987202
Q gi|254780623|r  147 RKVAVKIIRPGVRKRFFRDIQ--VMYLIARIQEKLLPSMRRLCFSAVVRALEQ-------VTKMEMDLRLEAAAFSEMAE  217 (517)
Q Consensus       147 ~~VaVKV~rP~i~~~i~~Dl~--~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~-------~l~~ElD~~~Ea~n~~~~~~  217 (517)
                      ++|-|.|==+|++..|.++-.  +++.+.+.  ...|.+-..-+.+-++||-.       .+...-=...=|+++.+|+.
T Consensus       137 ~kVLvRIYG~~td~fiDR~~E~~vF~lLSe~--glGPKLyG~FpnGRIEEFI~grtLtt~dLrdP~IS~~IA~kLaefH~  214 (439)
T PTZ00296        137 RHVLFRIYGKDVDALYNPISEFEVYKTMSKY--KIAPLLLNTFDGGRIEEWLYGDPLRIDDLKNKSILIGIANVLGKFHT  214 (439)
T ss_pred             CEEEEEECCCCCCEEECHHHHHHHHHHHHHC--CCCCEEEEECCCCEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHHC
T ss_conf             5489997369955476728999999999867--99980799838956787407842796785698899999999999738


Q ss_pred             CCCCCCCCCCHHCCCHHCCCCEEEEE-CCCCCCCCHHHHHHHHCCCHHHHH---HHHHH--HHHHHH----HHCCEECCC
Q ss_conf             44677664300001022178335300-247863242677332002256899---99999--999989----744866178
Q gi|254780623|r  218 NTVKDQGFRVPKIDWNRTERDVITME-WIDGVKISDTEKLRACGHDLERLS---VTLVQ--SFLLHT----LRDGFFHAD  287 (517)
Q Consensus       218 ~~~~~~~v~vP~vy~~~st~~VLvmE-~i~G~~i~d~~~l~~~~~d~~~la---~~l~~--~~~~qi----~~~GfFHaD  287 (517)
                      .-   .....|.- |+-+..-.-.|+ |...  +.....+.....+.....   +....  ....++    ---.|=|-|
T Consensus       215 l~---~p~~~p~~-wdr~p~l~~~m~kW~~~--l~~~~~~~~~~~dl~~~~~e~e~~~~~l~l~s~l~~~~~~vvFCHND  288 (439)
T PTZ00296        215 LS---RKRHLPEH-WDKTPCIFKMMDKWKLA--LSKYKNIDKVKLDIHKYIKESEKFIKFIKIYSKIDNIANAIVFCHND  288 (439)
T ss_pred             CC---CCCCCCCC-CCCCCHHHHHHHHHHHH--HHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf             76---65678987-65423599999999998--42145443200218777778999999999986412556873554132


Q ss_pred             CCCCEEEEECCCCEEEEECCHHEEC
Q ss_conf             7862289802895357434031216
Q gi|254780623|r  288 LHPGNLFVDSKGYIVAVDMGITGRL  312 (517)
Q Consensus       288 PHpGNi~v~~dg~i~~lDfG~vg~l  312 (517)
                      ...|||+ ..+..+.||||--+|.=
T Consensus       289 L~~~NIl-~~~~~l~~IDfEY~~yN  312 (439)
T PTZ00296        289 LQENNII-NTNKCLRLIDFEYSGFN  312 (439)
T ss_pred             CCCCCCC-CCCCCEEEEEECCCCCC
T ss_conf             5302353-58884799985035667


No 424
>KOG0664 consensus
Probab=93.76  E-value=0.13  Score=31.74  Aligned_cols=175  Identities=19%  Similarity=0.284  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      .||+-+-.|-|..-+  |..+|+.|+.| .-|++-.....--+.++-+. ++..+ .....++..++++      ---+|
T Consensus        59 RPIGYGAFGVVWsVT--DPRdgrrvalk-K~pnvfq~L~s~krvFre~k-mLcfF-kHdNVLSaLDILQ------Pph~d  127 (449)
T KOG0664          59 RPIGYGAFGVVWSVT--DPRSGKRVALK-KMPNVFQNLASCKRVFREIK-MLSSF-RHDNVLSLLDILQ------PANPS  127 (449)
T ss_pred             CCCCCCCEEEEEECC--CCCCCCEEEHH-HCCHHHHHHHHHHHHHHHHH-HHHHH-CCCCHHHHHHHCC------CCCCC
T ss_conf             855545415898613--77665441075-42267787888888875557-76653-1221777876428------99810


Q ss_pred             HHHHHHHHH-HHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH----
Q ss_conf             599998898-720244677664300001022178335300247863242677332002256899999999999897----
Q gi|254780623|r  205 LRLEAAAFS-EMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL----  279 (517)
Q Consensus       205 ~~~Ea~n~~-~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~----  279 (517)
                      |-.|.--.. .+...+  .+-|+-|                                   ..+...-++.|+.||+    
T Consensus       128 fFqEiYV~TELmQSDL--HKIIVSP-----------------------------------Q~Ls~DHvKVFlYQILRGLK  170 (449)
T KOG0664         128 FFQELYVLTELMQSDL--HKIIVSP-----------------------------------QALTPDHVKVFVYQILRGLK  170 (449)
T ss_pred             HHHHHHHHHHHHHHHH--HHEECCC-----------------------------------CCCCCCHHHHHHHHHHHHHH
T ss_conf             8999999999987535--5526168-----------------------------------77880155777999986667


Q ss_pred             ---HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCH
Q ss_conf             ---448661787862289802895357434031216989999999766999718727899999984126677893
Q gi|254780623|r  280 ---RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNR  351 (517)
Q Consensus       280 ---~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~  351 (517)
                         --|..|-|-.|||++|..+--+-+-|||....-+.+.+.++..=+.    -.|.+.-+.+...-..+..+|.
T Consensus       171 YLHsA~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d~~~hMTqEVV----TQYYRAPEiLMGaRhYs~AvDi  241 (449)
T KOG0664         171 YLHTANILHRDIKPGNLLVNSNCILKICDFGLARTWDQRDRLNMTHEVV----TQYYRAPELLMGARRYTGAVDI  241 (449)
T ss_pred             HHHHCCHHHCCCCCCCEEECCCCEEEECCCCCCCCCCHHHHHHHHHHHH----HHHHCCHHHHHCCHHCCCCCCE
T ss_conf             8754123323678763776167358852554321047356655379999----9873166876222000575200


No 425
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central 
Probab=93.39  E-value=0.06  Score=34.26  Aligned_cols=27  Identities=30%  Similarity=0.410  Sum_probs=23.6

Q ss_pred             EECCCCCCCEEEEE-CCCCEEEEECCHH
Q ss_conf             66178786228980-2895357434031
Q gi|254780623|r  283 FFHADLHPGNLFVD-SKGYIVAVDMGIT  309 (517)
Q Consensus       283 fFHaDPHpGNi~v~-~dg~i~~lDfG~v  309 (517)
                      +-=+|=||+||+++ .+|+++-+|||.+
T Consensus       141 lglGDRH~~NIli~~~tG~vvHIDFg~~  168 (237)
T cd00892         141 LGLGDRHGENILFDSNTGDVVHVDFNCL  168 (237)
T ss_pred             HCCCCCCCCCEEEECCCCCEEEEECHHH
T ss_conf             0347888765899858888898712133


No 426
>KOG0902 consensus
Probab=93.38  E-value=0.05  Score=34.90  Aligned_cols=128  Identities=13%  Similarity=0.093  Sum_probs=70.3

Q ss_pred             CCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             78786228980289535743403121698999999976699971872789999998412667789368999999852100
Q gi|254780623|r  286 ADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRAIGEPI  365 (517)
Q Consensus       286 aDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i~~~~~~~  365 (517)
                      -|-|-||||++++|+++-||||.+=+.+|.---++        +.+.+.--+...-||-..+   -..|.......+..|
T Consensus      1657 KDRHNGNim~Dd~G~~iHIDFGf~~e~sPGgnl~f--------E~~fKLt~Em~~~mgG~~~---~~~f~~f~elcVk~y 1725 (1803)
T KOG0902        1657 KDRHNGNIMIDDQGHIIHIDFGFMFESSPGGNLGF--------EPPFKLTKEMVMLMGGKME---AKPFKWFQELCVKGY 1725 (1803)
T ss_pred             CCCCCCCEEECCCCCEEEEEEEEEEEECCCCCCCC--------CCCCCCHHHHHHHHCCCCC---CCCHHHHHHHHHHHH
T ss_conf             22468835672678789986226885069986665--------7873226999999589877---862899999999999


Q ss_pred             CCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf             133433311356899999754527971288899999999998849987688988899999999999986459
Q gi|254780623|r  366 HGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVARMLNPEFNMWVSSEPIVEEWIRDHLG  437 (517)
Q Consensus       366 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~~~ll~r~l~~lEG~~~~LdP~~d~~~~~~p~~~~~l~~~~~  437 (517)
                      ...-.-    .+-+-.+.+.+-.-|+..       +|.= +++..-.+..|+.+=-+ |.-|....+.+.+.
T Consensus      1726 LA~R~~----~~~iv~~V~~mldsgLPC-------frg~-~i~nl~~RF~pemsere-Aa~fm~~vi~~~~~ 1784 (1803)
T KOG0902        1726 LAARPY----MDAIVSLVQSMLDSGLPC-------FRGQ-TIGNLRARFAPEMSERE-AALFMLSVITDSYL 1784 (1803)
T ss_pred             HHHCHH----HHHHHHHHHHHHHCCCCC-------CCCC-HHHHHHHHHCCCCCHHH-HHHHHHHHHHHHHH
T ss_conf             860467----888999999997159985-------0867-28889986096536688-99999999999998


No 427
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=93.13  E-value=0.077  Score=33.42  Aligned_cols=27  Identities=26%  Similarity=0.452  Sum_probs=23.8

Q ss_pred             EECCCCCCCEEEEE-CCCCEEEEECCHH
Q ss_conf             66178786228980-2895357434031
Q gi|254780623|r  283 FFHADLHPGNLFVD-SKGYIVAVDMGIT  309 (517)
Q Consensus       283 fFHaDPHpGNi~v~-~dg~i~~lDfG~v  309 (517)
                      +-=||=||.||+++ .+|+++-+|||.+
T Consensus       211 lGLGDRH~~NILi~~~tG~vvHIDfg~~  238 (307)
T cd05170         211 IGLGDRHLDNVLIDLKTGEVVHIDYNVC  238 (307)
T ss_pred             HCCCCCCCCEEEEECCCCCEEEEECHHH
T ss_conf             2367898640899868788899951233


No 428
>pfam00454 PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase. Some members of this family probably do not have lipid kinase activity and are protein kinases.
Probab=93.10  E-value=0.064  Score=34.02  Aligned_cols=27  Identities=30%  Similarity=0.593  Sum_probs=24.0

Q ss_pred             EECCCCCCCEEEEE-CCCCEEEEECCHH
Q ss_conf             66178786228980-2895357434031
Q gi|254780623|r  283 FFHADLHPGNLFVD-SKGYIVAVDMGIT  309 (517)
Q Consensus       283 fFHaDPHpGNi~v~-~dg~i~~lDfG~v  309 (517)
                      +--+|=|+|||+++ .+|+++=||||.+
T Consensus       134 lglgDRH~~NILi~~~~G~~vHIDfg~~  161 (233)
T pfam00454       134 LGNGDRHLDNILVDKTTGKLFHIDFGLC  161 (233)
T ss_pred             HCCCCCCCCCEEEECCCCCEEEECHHHH
T ss_conf             1278888760789768994887623755


No 429
>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain. subfamily of choline kinases
Probab=93.02  E-value=0.084  Score=33.12  Aligned_cols=34  Identities=24%  Similarity=0.363  Sum_probs=27.4

Q ss_pred             EECCCCCCCEEEEECC--C---CEEEEECCHHEECCHHH
Q ss_conf             6617878622898028--9---53574340312169899
Q gi|254780623|r  283 FFHADLHPGNLFVDSK--G---YIVAVDMGITGRLSKRE  316 (517)
Q Consensus       283 fFHaDPHpGNi~v~~d--g---~i~~lDfG~vg~l~~~~  316 (517)
                      +-|||++.+|+|+..+  |   .++++||-+++.-++..
T Consensus       122 l~HGD~w~nN~lf~~d~~g~~~~~~liDfQ~~~~g~p~~  160 (196)
T smart00587      122 LNHGDLWANNIMFKYDDEGKPEDVALIDFQLSHYGSPAE  160 (196)
T ss_pred             EECCCCCHHCEEEEECCCCCCCEEEEEECCCCCCCCCHH
T ss_conf             771543431153510799983303664220304588299


No 430
>PRK09902 hypothetical protein; Provisional
Probab=92.98  E-value=0.8  Score=25.56  Aligned_cols=117  Identities=17%  Similarity=0.159  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--------CEEEEECCCCCCCCHHHHHHHHC----CC---HHHH
Q ss_conf             865599998898720244677664300001022178--------33530024786324267733200----22---5689
Q gi|254780623|r  202 EMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--------DVITMEWIDGVKISDTEKLRACG----HD---LERL  266 (517)
Q Consensus       202 ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--------~VLvmE~i~G~~i~d~~~l~~~~----~d---~~~l  266 (517)
                      |--|.+|-.|+.++++     -.|.+|+++  |++.        -+||++-++|.-  +++..-+.+    ..   +..+
T Consensus        63 ~PTf~RE~~~i~~l~~-----lgI~v~~~v--f~~~rk~~g~~rAiLVT~aL~Gf~--~Ld~w~a~~~~~~~~~~~~~~~  133 (216)
T PRK09902         63 RPTIVREVAVIKELER-----AGVIVPKIV--FGEAVKIEGEWRALLVTEDMAGFI--SIADWYAQHAVSPYSDEVRQAM  133 (216)
T ss_pred             CCHHHHHHHHHHHHHH-----CCCCCCHHH--HHHHHCCCCCEEEEEEECCCCCCC--CHHHHHHCCCCCCCCHHHHHHH
T ss_conf             8409999999999997-----599821436--655103578468999864456763--0899973334121479999999


Q ss_pred             HHHHHHHHHHHHHHCCEECCCCCCCEEEEECC--CCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             99999999998974486617878622898028--953574340312169899999997669997187278999
Q gi|254780623|r  267 SVTLVQSFLLHTLRDGFFHADLHPGNLFVDSK--GYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVAD  337 (517)
Q Consensus       267 a~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~d--g~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~  337 (517)
                      ...+. .-+.++-..|.-|+=+=|--|||..+  +.+++||+-       ..|..+.  ....+.+|...+-+
T Consensus       134 L~~~a-~~l~rlH~~~~qHgclYpKHIFvr~~g~~e~aLIDLE-------K~R~rL~--~~~Aa~~Dl~QL~r  196 (216)
T PRK09902        134 LKAVA-LAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLE-------KSRRRLR--RDKAINHDFRQLEK  196 (216)
T ss_pred             HHHHH-HHHHHHHHCCCCCCCCCCCEEEEECCCCCCEEEEEHH-------HHCHHHH--HHHHHHHHHHHHHH
T ss_conf             99999-9999998678334677521699960687316886765-------4021343--77898866999997


No 431
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=92.91  E-value=0.076  Score=33.49  Aligned_cols=26  Identities=35%  Similarity=0.509  Sum_probs=22.9

Q ss_pred             ECCCCCCCEEEEE-CCCCEEEEECCHH
Q ss_conf             6178786228980-2895357434031
Q gi|254780623|r  284 FHADLHPGNLFVD-SKGYIVAVDMGIT  309 (517)
Q Consensus       284 FHaDPHpGNi~v~-~dg~i~~lDfG~v  309 (517)
                      -=+|=||+||+++ .+|+++-+|||.+
T Consensus       139 glgDRH~~NIli~~~tG~vvHIDF~~~  165 (235)
T cd05172         139 GIGDRHLSNFLVDLETGGLVGIDFGHA  165 (235)
T ss_pred             CCCCCCCCCEEEECCCCCEEEECHHHH
T ss_conf             236888764899869877887600121


No 432
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=92.84  E-value=0.075  Score=33.53  Aligned_cols=26  Identities=31%  Similarity=0.572  Sum_probs=22.7

Q ss_pred             ECCCCCCCEEEEEC-CCCEEEEECCHH
Q ss_conf             61787862289802-895357434031
Q gi|254780623|r  284 FHADLHPGNLFVDS-KGYIVAVDMGIT  309 (517)
Q Consensus       284 FHaDPHpGNi~v~~-dg~i~~lDfG~v  309 (517)
                      -=||-||+||+++. +|+++-+|||++
T Consensus       184 GLGDRH~~NIli~~~tG~vvhIDF~~~  210 (279)
T cd05171         184 GLGDRHANNILIDEKTAEVVHIDLGIA  210 (279)
T ss_pred             CCCCCCCCCEEEECCCCCEEEECCHHH
T ss_conf             157888652788758751999724776


No 433
>KOG0599 consensus
Probab=92.84  E-value=0.095  Score=32.73  Aligned_cols=159  Identities=14%  Similarity=0.241  Sum_probs=83.6

Q ss_pred             HHHHHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf             99999867--6667788886555502128887236876403104688777788999875321146854334691799999
Q gi|254780623|r  117 EELYCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRA  194 (517)
Q Consensus       117 ~~~F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e  194 (517)
                      .+.|...+  +-++-+-.+-|-|+.-+.  +|.+-++|+.--+.                  ....+       .. ..+
T Consensus        13 ~~fy~~y~pkeilgrgvss~vrRci~k~--t~~e~a~kii~~~a------------------t~~~~-------e~-~~~   64 (411)
T KOG0599          13 KGFYAKYEPKEILGRGVSSVVRRCIHKE--TGKEFAVKIIDVTA------------------TTESG-------ET-PYE   64 (411)
T ss_pred             HHHHHHCCHHHHHCCCCHHHHHHHHHCC--CCCCEEEEEEEECC------------------CCCCC-------CC-HHH
T ss_conf             6677634837776166216666555236--66512699998415------------------66578-------56-899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHH--HHCCCHHHHHHH
Q ss_conf             9988788865599998898720244677664-3000010221783--3530024786324267733--200225689999
Q gi|254780623|r  195 LEQVTKMEMDLRLEAAAFSEMAENTVKDQGF-RVPKIDWNRTERD--VITMEWIDGVKISDTEKLR--ACGHDLERLSVT  269 (517)
Q Consensus       195 ~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v-~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~--~~~~d~~~la~~  269 (517)
                      +.....+|++-.+-          ..+.|.| .+-.+|   -|+.  -||-|-+.---+-|.-.-+  -.......+++.
T Consensus        65 ~~EaT~~Ev~ILRq----------v~GHP~II~l~D~y---es~sF~FlVFdl~prGELFDyLts~VtlSEK~tR~iMrq  131 (411)
T KOG0599          65 MREATRQEISILRQ----------VMGHPYIIDLQDVY---ESDAFVFLVFDLMPRGELFDYLTSKVTLSEKETRRIMRQ  131 (411)
T ss_pred             HHHHHHHHHHHHHH----------HCCCCCEEEEEEEC---CCCCHHHHHHHHCCCCHHHHHHHHHEEECHHHHHHHHHH
T ss_conf             99999999999998----------62998378755402---476311334243345128877543144117889999999


Q ss_pred             HHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHH
Q ss_conf             999999989744866178786228980289535743403121698999
Q gi|254780623|r  270 LVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRER  317 (517)
Q Consensus       270 l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r  317 (517)
                      +++..-. +--.+..|-|..|-||+.+++-+|.+-|||...+|.+..+
T Consensus       132 lfegVey-lHa~~IVHRDLKpENILlddn~~i~isDFGFa~~l~~Gek  178 (411)
T KOG0599         132 LFEGVEY-LHARNIVHRDLKPENILLDDNMNIKISDFGFACQLEPGEK  178 (411)
T ss_pred             HHHHHHH-HHHHHHHHCCCCHHHEEECCCCCEEEECCCEEECCCCCHH
T ss_conf             9999999-9874344223686456431566358732540212687416


No 434
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with 
Probab=92.66  E-value=0.093  Score=32.79  Aligned_cols=27  Identities=30%  Similarity=0.587  Sum_probs=23.3

Q ss_pred             EECCCCCCCEEEEE-CCCCEEEEECCHH
Q ss_conf             66178786228980-2895357434031
Q gi|254780623|r  283 FFHADLHPGNLFVD-SKGYIVAVDMGIT  309 (517)
Q Consensus       283 fFHaDPHpGNi~v~-~dg~i~~lDfG~v  309 (517)
                      +-=||=||+||+++ .+|+++-+|||.+
T Consensus       183 lGlGDRH~~NILi~~~tG~vvHIDFg~~  210 (280)
T cd05169         183 LGLGDRHPSNIMIDRLTGKVIHIDFGDC  210 (280)
T ss_pred             EECCCCCCCCEEEECCCCCEEEEECHHH
T ss_conf             1316898643799868787899841665


No 435
>pfam07914 DUF1679 Protein of unknown function (DUF1679). The region featured in this family is found in a number of C. elegans proteins, in one case as a repeat. In many of the family members, this region is associated with the CHK region described by SMART as being found in ZnF_C4 and HLH domain-containing kinases. In fact, one member of this family is annotated as being a member of the nuclear hormone receptor family, and contains regions typical of such proteins (Interpro:IPR000536, Interpro:IPR008946, and Interpro:IPR001628).
Probab=92.57  E-value=0.89  Score=25.17  Aligned_cols=210  Identities=13%  Similarity=0.163  Sum_probs=99.0

Q ss_pred             CCCHHHHHHHHHHHCCCCHHHHHHHHH--HHHHHH-----HH--HHHHHHHE-ECCCCCCEEEEEEECCHHHHHHHHHHH
Q ss_conf             899899999875404788999999867--666778-----88--86555502-128887236876403104688777788
Q gi|254780623|r   98 FFPTNTARLSVASALKAPIEELYCEFD--DPIAAA-----SI--AQVHPAVV-HDINGYRKVAVKIIRPGVRKRFFRDIQ  167 (517)
Q Consensus        98 p~~~~~v~~~ie~elg~~~~~~F~~fd--ePlasA-----Si--aQVh~A~l-~d~~~g~~VaVKV~rP~i~~~i~~Dl~  167 (517)
                      .+-|++|+..+++.+|....  |-.-.  ++|+-+     -|  .|.|.-.- .+.+=..++|+||--+         +.
T Consensus        12 HVtweDVe~~iq~~~~T~ak--~G~n~k~~nI~D~~GFmSrI~lVe~dW~~~~~~~~LP~kf~lKIsS~---------l~   80 (413)
T pfam07914        12 HVTWEDVEKAIQEQLGTEAK--FGENKKATNIGDGKGFMSRIALVEPDWTNVEPSKNLPKKFALKISSQ---------LA   80 (413)
T ss_pred             EEEHHHHHHHHHHHHCCCCC--CCCCCEEEECCCCCCHHHEEEEEECCCCCCCCCCCCCCCEEEEECCH---------HH
T ss_conf             04599999999998488762--16884366653673544503686048603787766874179985035---------77


Q ss_pred             HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCH------HCCCCEEE
Q ss_conf             999875321146854334691799999998878886559999889872024467766430000102------21783353
Q gi|254780623|r  168 VMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWN------RTERDVIT  241 (517)
Q Consensus       168 ~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~------~st~~VLv  241 (517)
                       +..++.... . .....+.-......|...++.==  .+|..--+-+.+ +. .+.+-.|+||--      --++-+++
T Consensus        81 -~~~l~~~~~-~-~~~~~~~~e~~~~~f~~~~~~~H--NrEVn~Ykil~k-~n-~~~i~~pKVY~~kkfd~en~~KG~Ii  153 (413)
T pfam07914        81 -LVALSKKMK-F-EGGNGFTEEKELKHFESSTRELH--NREVNFYKILEK-FN-HPDIPYTKVYFLKKFDDENDLKGYII  153 (413)
T ss_pred             -HHHHHHHHH-C-CCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-CC-CCCCCCCCEEEECCCCCCCCCCCEEE
T ss_conf             -999999974-1-37788876899999999878765--479999999997-06-87898740123024565677777788


Q ss_pred             EECCCCCCCCHH----------------HHHHHHCCC-----HHHH-----HHHH---------HHHHHHHH--------
Q ss_conf             002478632426----------------773320022-----5689-----9999---------99999989--------
Q gi|254780623|r  242 MEWIDGVKISDT----------------EKLRACGHD-----LERL-----SVTL---------VQSFLLHT--------  278 (517)
Q Consensus       242 mE~i~G~~i~d~----------------~~l~~~~~d-----~~~l-----a~~l---------~~~~~~qi--------  278 (517)
                      |||++++..-+.                +.+.+.+..     .+.+     .+..         ++.++.|+        
T Consensus       154 mE~v~ni~~~~~y~ni~~deL~~vv~~iA~fqA~~~~LseEE~k~i~g~df~~~~~~~~~~~~~~~~~f~~lr~~~g~~~  233 (413)
T pfam07914       154 MEYVPNIHTRHMYENIPADELIPVLRAIATFQALGESLSEEEKKSANGADFLEQMFETFMSEEGLKGIFDQLRNIFGAEY  233 (413)
T ss_pred             EEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_conf             88248846872548989899999999999999864349989975356757999999987236779999999975411123


Q ss_pred             ----------HHC----------------------CEECCCCCCCEEEEECC--CCE---EEEECCHHEECCHHHHHHHH
Q ss_conf             ----------744----------------------86617878622898028--953---57434031216989999999
Q gi|254780623|r  279 ----------LRD----------------------GFFHADLHPGNLFVDSK--GYI---VAVDMGITGRLSKRERRFLA  321 (517)
Q Consensus       279 ----------~~~----------------------GfFHaDPHpGNi~v~~d--g~i---~~lDfG~vg~l~~~~r~~l~  321 (517)
                                +.+                      =+-|+|+-+.||+...+  |++   .+|||-++...+|..  -+.
T Consensus       234 ~ekv~e~~~~~~~y~~~~~~~~k~~ni~~~lG~k~Vl~HgDlw~~NiL~~~~~~g~~~~~aiID~Q~~~~g~p~~--Dl~  311 (413)
T pfam07914       234 PEKVEELVDIFEHYGPEILIFKKYTNLSKVLGIKPVLVHGDLWQSNILWSLDNDGKLKLKAIIDYQTVHMGNPAE--DLV  311 (413)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHEEECCCCCCCCEEHHEEEHHHHCCCCHHH--HHH
T ss_conf             899987789998737234458988747875187544104751576501213778760001111101205688488--899


Q ss_pred             HHHHHH
Q ss_conf             766999
Q gi|254780623|r  322 EILYGF  327 (517)
Q Consensus       322 ~l~~a~  327 (517)
                      +++...
T Consensus       312 rl~~~~  317 (413)
T pfam07914       312 RLLLSC  317 (413)
T ss_pred             HHHHHC
T ss_conf             999835


No 436
>KOG0903 consensus
Probab=92.40  E-value=0.078  Score=33.39  Aligned_cols=123  Identities=18%  Similarity=0.231  Sum_probs=61.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHH-
Q ss_conf             5433469179999999887888655999988987202446776-64300001022178--3353002478632426773-
Q gi|254780623|r  181 PSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQ-GFRVPKIDWNRTER--DVITMEWIDGVKISDTEKL-  256 (517)
Q Consensus       181 ~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~-~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l-  256 (517)
                      +....+++..++---.+.+++|   ..-.+-+..|.+.|.... .+++ ++|.=|+|.  .=|+..-++..+|-.+..- 
T Consensus       580 g~~pnWdL~SVIVKtGdDLrQE---~fA~Qli~~f~~IW~EegvplWl-RpykIlvtss~sGLIEtI~da~SIHsIKk~l  655 (847)
T KOG0903         580 GHLPNWDLRSVIVKTGDDLRQE---LFAYQLISAFKDIWQEEGVPLWL-RPYKILVTSSDSGLIETIVDAMSIHSIKKRL  655 (847)
T ss_pred             CCCCCCCEEEEEEECCCHHHHH---HHHHHHHHHHHHHHHHCCCCCEE-EEEEEEEEECCCCCEEECCCHHHHHHHHHHC
T ss_conf             6678862577752048167799---99999999999999973996125-4579999706865424322136489998853


Q ss_pred             ------H----HHCC-C---H--------HHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             ------3----2002-2---5--------689999999999989744866178786228980289535743403121698
Q gi|254780623|r  257 ------R----ACGH-D---L--------ERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       257 ------~----~~~~-d---~--------~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                            +    +.|- +   .        ..+|.--+-+|+-|+       -|=|-|||+++.+|.|+-||||.|-.=+|
T Consensus       656 ~~~~~l~~F~~~~g~~NS~~yk~AQrNFvqSlagYSLvcYlLQv-------KDRHNGNILiD~EGHIIHIDFGFmLsnsP  728 (847)
T KOG0903         656 PNLASLRHFFAAFGKPNSEKYKSAQRNFVQSLAGYSLVCYLLQV-------KDRHNGNILIDEEGHIIHIDFGFMLSNSP  728 (847)
T ss_pred             CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCCCCCEEECCCCCEEEEEEEEEECCCC
T ss_conf             00244889999857888399999999999998889999886302-------12457735763788779986346724899


No 437
>KOG0665 consensus
Probab=92.31  E-value=0.18  Score=30.61  Aligned_cols=130  Identities=19%  Similarity=0.280  Sum_probs=78.3

Q ss_pred             CCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHH--HHHHHHHHCCEECCCCCCCEEEEECCCC
Q ss_conf             66430000102217833530024786324267733200225689999999--9999897448661787862289802895
Q gi|254780623|r  223 QGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQ--SFLLHTLRDGFFHADLHPGNLFVDSKGY  300 (517)
Q Consensus       223 ~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~--~~~~qi~~~GfFHaDPHpGNi~v~~dg~  300 (517)
                      -.+.-|.-..+--.+--+|||++++ .+..+..++   .|-+.+...+..  +-.+-+...|+.|-|.-|-||.+..++.
T Consensus        81 ~n~ftP~~~l~~f~e~y~vme~m~~-nl~~vi~~e---lDH~tis~i~yq~~~~ik~lhs~~IihRdLkPsnivv~~~~~  156 (369)
T KOG0665          81 LNVFTPQKTLEEFQEVYLVMELMDA-NLCQVILME---LDHETISYILYQMLCGIKHLHSAGIIHRDLKPSNIVVNSDCT  156 (369)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCEECCHHH
T ss_conf             1105764248988777888885122-788888874---130888999998788889988525143356764414146320


Q ss_pred             EEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf             357434031216989999999766999718727899999984126677893689999998521
Q gi|254780623|r  301 IVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRAIGE  363 (517)
Q Consensus       301 i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i~~~~~  363 (517)
                      +-++|||..-+-++.++      ..-.+..-+.++.++.+.+| ..+.+|.-..--.+.+++.
T Consensus       157 lKi~dfg~ar~e~~~~~------mTpyVvtRyyrapevilg~~-~ke~vdiwSvGci~gEli~  212 (369)
T KOG0665         157 LKILDFGLARTEDTDFM------MTPYVVTRYYRAPEVILGMG-YKENVDIWSVGCIMGELIL  212 (369)
T ss_pred             EEECCCHHHCCCCCCCC------CCCHHHEEECCCCHHEECCC-CCCCCHHHHHHHHHHHHHH
T ss_conf             56423011021476423------67343302102731010367-7420022544358887750


No 438
>pfam02958 DUF227 Domain of unknown function (DUF227). This family includes a large number of drosophila proteins of unknown function. The family also includes several C. elegans proteins. The alignment contains many histidines and aspartates that are conserved, suggesting a metal binding and possibly a phosphoesterase function (A Bateman pers. obs.).
Probab=91.92  E-value=0.49  Score=27.17  Aligned_cols=34  Identities=24%  Similarity=0.344  Sum_probs=27.0

Q ss_pred             EECCCCCCCEEEEE--CCC---CEEEEECCHHEECCHHH
Q ss_conf             66178786228980--289---53574340312169899
Q gi|254780623|r  283 FFHADLHPGNLFVD--SKG---YIVAVDMGITGRLSKRE  316 (517)
Q Consensus       283 fFHaDPHpGNi~v~--~dg---~i~~lDfG~vg~l~~~~  316 (517)
                      +-|||.|.+|+|+.  ++|   .++++||-+++.-++..
T Consensus       216 l~HGD~w~nN~mf~~d~~g~~~~~~lvDfQ~~~~g~p~~  254 (293)
T pfam02958       216 LNHGDLWVNNIMFKYDEEGEPEDVILVDFQLSRYGSPAL  254 (293)
T ss_pred             EECCCCCHHHEEEEECCCCCEEEEEEEECCCCCCCCHHH
T ss_conf             884654643064642799986318999378578188099


No 439
>COG3281 Ble Uncharacterized protein, probably involved in trehalose biosynthesis [Carbohydrate transport and metabolism]
Probab=91.90  E-value=0.22  Score=29.92  Aligned_cols=36  Identities=28%  Similarity=0.518  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECC
Q ss_conf             8999999999998974486617878622898028953574340
Q gi|254780623|r  265 RLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMG  307 (517)
Q Consensus       265 ~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG  307 (517)
                      +++.......+.+      .|+|.|-|.+++.+ |+..+|||-
T Consensus       274 ~la~~algg~l~R------vHGDLHLgQVLvt~-g~~~liDFE  309 (438)
T COG3281         274 KLAREALGGVLQR------VHGDLHLGQVLVTP-GRALLIDFE  309 (438)
T ss_pred             HHHHHHHHHHHHH------HHCCCEEHHEEEEC-CCEEEEECC
T ss_conf             9987654357988------70540004046307-837998447


No 440
>KOG4717 consensus
Probab=91.39  E-value=1.2  Score=24.21  Aligned_cols=146  Identities=18%  Similarity=0.177  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             76667788886555502128887236876403104688777788999875321146854334691799999998878886
Q gi|254780623|r  124 DDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM  203 (517)
Q Consensus       124 dePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El  203 (517)
                      |+.++.+-.|-|--|+---  +|++|||||.-..-                           +|-.     -...+    
T Consensus        23 ekTlG~GHFAVVKLArHVF--TGekVAVKviDKTK---------------------------lD~~-----st~hl----   64 (864)
T KOG4717          23 EKTLGRGHFAVVKLARHVF--TGEKVAVKVIDKTK---------------------------LDTL-----STGHL----   64 (864)
T ss_pred             HHHHCCCCEEEHHHHHHHC--CCCEEEEEEECCCC---------------------------CCHH-----HHHHH----
T ss_conf             6651677211011344641--46636899841333---------------------------1124-----56778----


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH---
Q ss_conf             55999988987202446776643000010221783353002478632426773320022568999999999998974---
Q gi|254780623|r  204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLR---  280 (517)
Q Consensus       204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~---  280 (517)
                        -.|.+.|+....-    .-|+.=+|++ --|+--|+.|.=+|--+-|.---++.|.     .+.+.+-||.||+.   
T Consensus        65 --fqEVRCMKLVQHp----NiVRLYEViD-TQTKlyLiLELGD~GDl~DyImKHe~Gl-----~E~La~kYF~QI~~AI~  132 (864)
T KOG4717          65 --FQEVRCMKLVQHP----NIVRLYEVID-TQTKLYLILELGDGGDLFDYIMKHEEGL-----NEDLAKKYFAQIVHAIS  132 (864)
T ss_pred             --HHHHHHHHHHCCC----CEEEEEEECC-CCCEEEEEEEECCCCCHHHHHHHHCCCC-----CHHHHHHHHHHHHHHHH
T ss_conf             --8998999874277----7455223002-5533899998167730899998610220-----47889999999999998


Q ss_pred             ----CCEECCCCCCCEE-EEECCCCEEEEECCHHEECCHHHHHH
Q ss_conf             ----4866178786228-98028953574340312169899999
Q gi|254780623|r  281 ----DGFFHADLHPGNL-FVDSKGYIVAVDMGITGRLSKRERRF  319 (517)
Q Consensus       281 ----~GfFHaDPHpGNi-~v~~dg~i~~lDfG~vg~l~~~~r~~  319 (517)
                          -.+.|-|..|-|. |+.+-|-+-+-|||.--.+-|..+-.
T Consensus       133 YCHqLHVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG~kL~  176 (864)
T KOG4717         133 YCHQLHVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPGKKLT  176 (864)
T ss_pred             HHHHHHHEECCCCCCEEEEEEECCCEEEECCCCCCCCCCCCHHH
T ss_conf             87665400034785305776513805740035455678861120


No 441
>PRK09188 serine/threonine protein kinase; Provisional
Probab=91.03  E-value=1.3  Score=23.96  Aligned_cols=99  Identities=22%  Similarity=0.315  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEE
Q ss_conf             59999889872024467766430000102217833530024786324267733200225689999999999989744866
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFF  284 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfF  284 (517)
                      +.+|++.+++.+..      ..+|...+  ...+-|+-.|++|+++--.    ...-|..-  -+-.+..++++-.-|+-
T Consensus        68 a~rE~~AL~~~~g~------~~~P~Ll~--~d~~~L~R~~~~G~~l~la----~P~gd~a~--frsA~r~Lr~lhRaGv~  133 (365)
T PRK09188         68 AAREIRALKTVRGI------VVVPQLLA--TGKDGLVRGWIEGVPLHLA----RPHGDPKW--FRSAHRALRDLHRAGVT  133 (365)
T ss_pred             HHHHHHHHHHHCCC------CCCCCEEE--ECCCCEEHHHHCCCCCCCC----CCCCCHHH--HHHHHHHHHHHHHCCCC
T ss_conf             99999999972377------88871245--0763001011047521016----99886799--99999999999970666


Q ss_pred             CCCC-CCCEEEEECCCCEEEEECCHHEECCHHHH
Q ss_conf             1787-86228980289535743403121698999
Q gi|254780623|r  285 HADL-HPGNLFVDSKGYIVAVDMGITGRLSKRER  317 (517)
Q Consensus       285 HaDP-HpGNi~v~~dg~i~~lDfG~vg~l~~~~r  317 (517)
                      |-|. .|-|.++.+||+-.++||-.....++.-+
T Consensus       134 HNDLAK~qNWL~~~dG~a~viDFQLA~~~~rR~~  167 (365)
T PRK09188        134 HNDLAKPQNWLMGPDGEAAVIDFQLASVFRRRSA  167 (365)
T ss_pred             CCCCCCHHCCEECCCCCEEEEEEEECCCCCCHHH
T ss_conf             4300120021036889856676330025573228


No 442
>KOG0671 consensus
Probab=91.03  E-value=0.62  Score=26.43  Aligned_cols=129  Identities=17%  Similarity=0.174  Sum_probs=77.2

Q ss_pred             HHHHHHHHHCCC-CCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCH------HHHHHHHHHHHHHHHHH
Q ss_conf             998898720244-67766430000102217833530024786324267733200225------68999999999998974
Q gi|254780623|r  208 EAAAFSEMAENT-VKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDL------ERLSVTLVQSFLLHTLR  280 (517)
Q Consensus       208 Ea~n~~~~~~~~-~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~------~~la~~l~~~~~~qi~~  280 (517)
                      |.+-++++.+.= .+.-.+..=.=|-||-+.-++|-|-+ |.++-|  -+++.++-+      ..+|..+.++.-. +-.
T Consensus       135 Ei~vLqki~~~DP~g~~rcv~m~~wFdyrghiCivfell-G~S~~d--Flk~N~y~~fpi~~ir~m~~QL~~sv~f-Lh~  210 (415)
T KOG0671         135 EIEVLQKINESDPNGKFRCVQMRDWFDYRGHICIVFELL-GLSTFD--FLKENNYIPFPIDHIRHMGYQLLESVAF-LHD  210 (415)
T ss_pred             HHHHHHHHHCCCCCCCEEEEEEEHHHHCCCCEEEEEECC-CHHHHH--HHCCCCCCCCCHHHHHHHHHHHHHHHHH-HHH
T ss_conf             999999987039987547886400352168537998246-765887--7344786566368999999999999999-875


Q ss_pred             CCEECCCCCCCEEEEEC--------------------CCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             48661787862289802--------------------8953574340312169899999997669997187278999999
Q gi|254780623|r  281 DGFFHADLHPGNLFVDS--------------------KGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHF  340 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~--------------------dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~  340 (517)
                      .+..|.|.-|-||++..                    ...|.+||||-...-.+..        ..++.-.-.++-+.++
T Consensus       211 ~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e~h--------s~iVsTRHYRAPEViL  282 (415)
T KOG0671         211 LKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAIKVIDFGSATFDHEHH--------STIVSTRHYRAPEVIL  282 (415)
T ss_pred             CCEEECCCCHHHEEEECCCEEEEECCCCCCCEECCCCCCCEEEEECCCCCCCCCCC--------CEEEECCCCCCCHHEE
T ss_conf             46035378710078852532787526775210015677645888548752104676--------4244203457732113


Q ss_pred             HHHCCCCC
Q ss_conf             84126677
Q gi|254780623|r  341 EAGYVPRH  348 (517)
Q Consensus       341 ~lg~~~~~  348 (517)
                      .+|+..+.
T Consensus       283 gLGwS~pC  290 (415)
T KOG0671         283 GLGWSQPC  290 (415)
T ss_pred             CCCCCCCC
T ss_conf             16767755


No 443
>pfam12260 PIP49_C Pancreatitis induced protein 49 C terminal. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 344 to 431 amino acids in length. This protein has a single completely conserved residue C that may be functionally important. PIP49 is a putative transmembrane protein which is induced to express during pancreatitis.
Probab=90.58  E-value=1.4  Score=23.66  Aligned_cols=85  Identities=16%  Similarity=0.182  Sum_probs=50.2

Q ss_pred             CCHHCCCHHCCCCEEEEECCCCCCCCHH------HHHHHHC-------------CCHHHHHHHHHHHHHHHHHHCCE---
Q ss_conf             3000010221783353002478632426------7733200-------------22568999999999998974486---
Q gi|254780623|r  226 RVPKIDWNRTERDVITMEWIDGVKISDT------EKLRACG-------------HDLERLSVTLVQSFLLHTLRDGF---  283 (517)
Q Consensus       226 ~vP~vy~~~st~~VLvmE~i~G~~i~d~------~~l~~~~-------------~d~~~la~~l~~~~~~qi~~~Gf---  283 (517)
                      ++|+++- +|+ ..-++||++-.++-..      +.+-..+             -.+.++|-.+++. +..+| +|+   
T Consensus        26 h~pkllG-~CG-~~YavE~v~~~~l~g~~lp~~l~~~~p~~~~~~~~q~~~p~W~~rakIalg~Le~-vee~f-~~~~g~  101 (205)
T pfam12260        26 HTPKLLG-FCG-DLYVTERVPHGSLYGISLPWPLEVLIPSGLRRSMDQWFTPSWPRKAKIAIGLLEF-VEDIF-HGTYGS  101 (205)
T ss_pred             CCHHHHC-CCC-CEEEEEECCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHHH-CCCCCC
T ss_conf             4702300-145-6036842046652123476166541763788888876065404789999999999-99980-698775


Q ss_pred             -ECCCCCCCEEEEECCCCEEEEECCHHEECCHHH
Q ss_conf             -617878622898028953574340312169899
Q gi|254780623|r  284 -FHADLHPGNLFVDSKGYIVAVDMGITGRLSKRE  316 (517)
Q Consensus       284 -FHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~  316 (517)
                       ..+|-+|+|+.++.+.++.++|--++  .++..
T Consensus       102 ~~mCDv~~~nfG~~~~~~~k~iD~d~v--~~E~~  133 (205)
T pfam12260       102 FLMCDTSAKNFGYNEKYDLKMVDLRKV--VPEAT  133 (205)
T ss_pred             EEEECCCCCCCCCCCCCCEEEEEHHHH--CCHHH
T ss_conf             677514321015458885699866664--32899


No 444
>PRK10271 thiK thiamine kinase; Provisional
Probab=90.47  E-value=1.3  Score=23.94  Aligned_cols=40  Identities=28%  Similarity=0.383  Sum_probs=31.6

Q ss_pred             HHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHH
Q ss_conf             89744866178786228980289535743403121698999
Q gi|254780623|r  277 HTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRER  317 (517)
Q Consensus       277 qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r  317 (517)
                      ..+....-|-|.||||+..+++| +.+|||--.+--|+..-
T Consensus        73 ~~lkla~~H~D~~~~Nli~~~~g-~~liDWEYAa~~d~~l~  112 (188)
T PRK10271         73 RPLRLAPLHMDVHAGNLVHSASG-LRLIDWEYAGDGDIALE  112 (188)
T ss_pred             CCCCCCCCCCCCCCCCEEECCCC-CEEEEECCCCCCCHHHH
T ss_conf             85232200002565414551787-46875411245676889


No 445
>KOG0690 consensus
Probab=89.31  E-value=0.67  Score=26.15  Aligned_cols=70  Identities=24%  Similarity=0.421  Sum_probs=42.1

Q ss_pred             EEEEECCCCCCCC-HHHHHHHHCCCHHHH-HHHHHH--HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf             3530024786324-267733200225689-999999--999989744866178786228980289535743403121
Q gi|254780623|r  239 VITMEWIDGVKIS-DTEKLRACGHDLERL-SVTLVQ--SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR  311 (517)
Q Consensus       239 VLvmE~i~G~~i~-d~~~l~~~~~d~~~l-a~~l~~--~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~  311 (517)
                      +.||||..|--+- .+..-+-...+|.+. +..++.  -|+   --.+..--|..--|+++++||.|-+-|||.|.+
T Consensus       244 CFVMeyanGGeLf~HLsrer~FsE~RtRFYGaEIvsAL~YL---Hs~~ivYRDlKLENLlLDkDGHIKitDFGLCKE  317 (516)
T KOG0690         244 CFVMEYANGGELFFHLSRERVFSEDRTRFYGAEIVSALGYL---HSRNIVYRDLKLENLLLDKDGHIKITDFGLCKE  317 (516)
T ss_pred             EEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHH---HHCCEEEEECHHHHHEECCCCCEEEEECCCCCC
T ss_conf             99999724855777601101145313334158999986555---317756530024453016679667500232310


No 446
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=88.95  E-value=0.29  Score=29.02  Aligned_cols=27  Identities=15%  Similarity=0.352  Sum_probs=23.2

Q ss_pred             EECCCCCCCEEEEE-CCCCEEEEECCHH
Q ss_conf             66178786228980-2895357434031
Q gi|254780623|r  283 FFHADLHPGNLFVD-SKGYIVAVDMGIT  309 (517)
Q Consensus       283 fFHaDPHpGNi~v~-~dg~i~~lDfG~v  309 (517)
                      +.-||=||.||+++ .+|+++-+|||.+
T Consensus       156 lGlGDRh~~Nili~~~tG~vvhiDf~~~  183 (253)
T cd05163         156 LSINNRNPDKIFISRDTGNVYQSDLLPS  183 (253)
T ss_pred             HCCCCCCHHHEEEECCCCCEEEEEECHH
T ss_conf             4168998566799868777899853322


No 447
>KOG0576 consensus
Probab=88.92  E-value=0.44  Score=27.59  Aligned_cols=212  Identities=13%  Similarity=0.124  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             66778888655550212888723687640310468877778899987532114685433469179999999887888655
Q gi|254780623|r  126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL  205 (517)
Q Consensus       126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~  205 (517)
                      -++|++-|-||+|+=+.  +|+-+||||..=.--+.+..+    ..       =....+.-+-+.++--|          
T Consensus        22 rvgsgTygdvyKaRd~~--s~elaavkvVkLep~dd~~~i----qq-------ei~~~~dc~h~nivay~----------   78 (829)
T KOG0576          22 RVGSGTYGDVYKARDKR--SGELAAVKVVKLEPGDDFSGI----QQ-------EIGMLRDCRHPNIVAYF----------   78 (829)
T ss_pred             EECCCCCCCHHHHCCCC--CCCHHHHEEEECCCCCCCCCC----CC-------CEEEEECCCCCCHHHHH----------
T ss_conf             42378632022220123--576223123422578640000----32-------10355037785728887----------


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCC-CHHHHH---HHHHHHHHHHHHHC
Q ss_conf             99998898720244677664300001022178335300247863242677332002-256899---99999999989744
Q gi|254780623|r  206 RLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGH-DLERLS---VTLVQSFLLHTLRD  281 (517)
Q Consensus       206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~-d~~~la---~~l~~~~~~qi~~~  281 (517)
                                +...+.+              +-.++|||..|-++-|+...  .|. .-.++|   +.-.. -++-+.--
T Consensus        79 ----------gsylr~d--------------klwicMEycgggslQdiy~~--TgplselqiayvcRetl~-gl~ylhs~  131 (829)
T KOG0576          79 ----------GSYLRRD--------------KLWICMEYCGGGSLQDIYHV--TGPLSELQIAYVCRETLQ-GLKYLHSQ  131 (829)
T ss_pred             ----------HHHHHHC--------------CCEEEEEECCCCCCCCEEEE--CCCCHHHHHHHHHHHHHC-CCHHHHCC
T ss_conf             ----------5432314--------------76799996289862200252--132156788888762011-11244417


Q ss_pred             CEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHH---------HHHHHH-------CCCHHHHHHHHHHHHCC
Q ss_conf             86617878622898028953574340312169899999997---------669997-------18727899999984126
Q gi|254780623|r  282 GFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAE---------ILYGFI-------SRDYQRVADVHFEAGYV  345 (517)
Q Consensus       282 GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~---------l~~a~~-------~~D~~~~~~~l~~lg~~  345 (517)
                      |-.|-|-..|||+.+..|.+-+-|||.-+.+....-..-.-         =+.|+-       .-|...+....+++|..
T Consensus       132 gk~hRdiKGanilltd~gDvklaDfgvsaqitati~KrksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eL  211 (829)
T KOG0576         132 GKIHRDIKGANILLTDEGDVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGEL  211 (829)
T ss_pred             CCCCCCCCCCCEEECCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHC
T ss_conf             75024455662431466753313467402333222121102588442224678887504610104430145415445421


Q ss_pred             -CCCCCHHHHHHHHHHHHHHCCCCCHHH-CCHHHHHHHHHHHHH
Q ss_conf             -677893689999998521001334333-113568999997545
Q gi|254780623|r  346 -PRHHNRFSFAQAIRAIGEPIHGQSSDV-ISMGKLLTMLFEITE  387 (517)
Q Consensus       346 -~~~~d~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~  387 (517)
                       ++..|...++.-.-.--..|....+++ ....+.+.++.+.+.
T Consensus       212 qpplfdlhpmr~l~LmTkS~~qpp~lkDk~kws~~fh~fvK~al  255 (829)
T KOG0576         212 QPPLFDLHPMRALFLMTKSGFQPPTLKDKTKWSEFFHNFVKGAL  255 (829)
T ss_pred             CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             88432202678888762258989855577632388999988871


No 448
>TIGR02457 TreS_Cterm trehalose synthase-fused probable maltokinase; InterPro: IPR012811   Three pathways exist for the biosynthesis of trehalose, an osmoprotectant that in some species is also a precursor of certain cell wall glycolipids. Trehalose synthase, TreS, can interconvert maltose and trehalose, but while the equilibrium favours trehalose, physiological concentrations of trehalose may be much greater than that of maltose, and TreS may act largely in its degradation. This entry describes a domain found only as a C-terminal fusion to TreS proteins. The most closely related proteins outside this family, Pep2 of Streptomyces coelicolor and Mak1 of Actinoplanes missouriensis, have known maltokinase activity. We suggest this domain acts as a maltokinase and helps drive conversion of trehalose to maltose..
Probab=88.69  E-value=0.77  Score=25.68  Aligned_cols=42  Identities=14%  Similarity=0.162  Sum_probs=19.2

Q ss_pred             CHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
Q ss_conf             031216989999999766999718727899999984126677
Q gi|254780623|r  307 GITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRH  348 (517)
Q Consensus       307 G~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~  348 (517)
                      |.++.+|+-..+.....+..++-.=++++++.+..++...++
T Consensus       296 G~~~~~PE~~~E~~~~~Y~~fag~~G~RLAelH~aLA~~~~D  337 (568)
T TIGR02457       296 GSASKLPELIAEQILAGYLEFAGLLGRRLAELHLALAAATED  337 (568)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             755568534557751228999999999899999985589987


No 449
>KOG0662 consensus
Probab=88.27  E-value=0.55  Score=26.78  Aligned_cols=134  Identities=24%  Similarity=0.350  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      |-|+-+.-|-|.+|+-++  +++-||.|-.|-+-.                 +.-+|               .+.++|+-
T Consensus         8 ekigegtygtvfkarn~~--t~eivalkrvrlddd-----------------degvp---------------ssalreic   53 (292)
T KOG0662           8 EKIGEGTYGTVFKARNRE--THEIVALKRVRLDDD-----------------DEGVP---------------SSALREIC   53 (292)
T ss_pred             HHHCCCCCEEEEECCCCC--CCCEEEEEEEECCCC-----------------CCCCC---------------HHHHHHHH
T ss_conf             864687632467615677--530688998861677-----------------77895---------------79999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHH-HHHHCCCHHHHHHHHHHHHHHHHHH-
Q ss_conf             5999988987202446776643000010221783--35300247863242677-3320022568999999999998974-
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEK-LRACGHDLERLSVTLVQSFLLHTLR-  280 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~-l~~~~~d~~~la~~l~~~~~~qi~~-  280 (517)
                      ...|.++          ..-|+   .|+-+-+++  .||.||++-    |+.. .+..+   -.+--..+++|+-|++. 
T Consensus        54 llkelkh----------knivr---l~dvlhsdkkltlvfe~cdq----dlkkyfdsln---g~~d~~~~rsfmlqllrg  113 (292)
T KOG0662          54 LLKELKH----------KNIVR---LHDVLHSDKKLTLVFEFCDQ----DLKKYFDSLN---GDLDPEIVRSFMLQLLRG  113 (292)
T ss_pred             HHHHHHC----------CCEEE---HHHHHCCCCEEEEEHHHHHH----HHHHHHHHCC---CCCCHHHHHHHHHHHHHH
T ss_conf             9988610----------45431---44454257625875897668----8999988617---866899999999999853


Q ss_pred             ------CCEECCCCCCCEEEEECCCCEEEEECCHHEEC
Q ss_conf             ------48661787862289802895357434031216
Q gi|254780623|r  281 ------DGFFHADLHPGNLFVDSKGYIVAVDMGITGRL  312 (517)
Q Consensus       281 ------~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l  312 (517)
                            +++.|-|..|-|++|..+|.+-+-|||...-+
T Consensus       114 l~fchshnvlhrdlkpqnllin~ngelkladfglaraf  151 (292)
T KOG0662         114 LGFCHSHNVLHRDLKPQNLLINRNGELKLADFGLARAF  151 (292)
T ss_pred             HHHHHHHHHHHCCCCCCEEEECCCCCEEECCCCHHHHC
T ss_conf             20332324664037711077536883875000335541


No 450
>KOG1152 consensus
Probab=88.26  E-value=0.59  Score=26.54  Aligned_cols=150  Identities=17%  Similarity=0.338  Sum_probs=88.8

Q ss_pred             HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99867--6667788886555502128887236876403104688777788999875321146854334691799999998
Q gi|254780623|r  120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ  197 (517)
Q Consensus       120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~  197 (517)
                      |++|.  .|++++--|||..|+-+.+  ..+||||-..   .++|-.|-.       +-++-.+        .+--|+  
T Consensus       560 ~s~yttlq~lG~GAyGkV~lai~K~n--~~eVViK~I~---KeRIL~DtW-------vrDrkLG--------tVp~EI--  617 (772)
T KOG1152         560 FSDYTTLQPLGEGAYGKVNLAIHKEN--NYEVVIKMIF---KERILVDTW-------VRDRKLG--------TVPSEI--  617 (772)
T ss_pred             CCCCEEEEECCCCCCCEEEEEEECCC--CEEEEEEEHH---HHHHHHHHH-------HCCCCCC--------CCCHHH--
T ss_conf             23413530136665305787663366--5389866312---445434342-------0056457--------662567--


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             87888655999988987202446776643000010221783353002478632426773320022568999999999998
Q gi|254780623|r  198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH  277 (517)
Q Consensus       198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q  277 (517)
                      +|+.-++ .+--.|+-++-..|.++...++             +|| +.|.-|+=.+-.+ .   ...+.+......|+|
T Consensus       618 qIla~l~-~~sH~NIlKlLdfFEddd~yyl-------------~te-~hg~gIDLFd~IE-~---kp~m~E~eAk~IFkQ  678 (772)
T KOG1152         618 QILATLN-KHSHENILKLLDFFEDDDYYYL-------------ETE-VHGEGIDLFDFIE-F---KPRMDEPEAKLIFKQ  678 (772)
T ss_pred             HHHHHHH-HCCCCCHHHHHHEEECCCEEEE-------------EEC-CCCCCCCHHHHHH-C---CCCCCHHHHHHHHHH
T ss_conf             7998864-2475116545220105871699-------------744-7778752566534-1---676560788889999


Q ss_pred             H-------HHCCEECCCCCCCEEEEECCCCEEEEECCHHE
Q ss_conf             9-------74486617878622898028953574340312
Q gi|254780623|r  278 T-------LRDGFFHADLHPGNLFVDSKGYIVAVDMGITG  310 (517)
Q Consensus       278 i-------~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg  310 (517)
                      +       -..|..|-|-.--|..++..|-.-+||||...
T Consensus       679 V~agi~hlh~~~ivhrdikdenvivd~~g~~klidfgsaa  718 (772)
T KOG1152         679 VVAGIKHLHDQGIVHRDIKDENVIVDSNGFVKLIDFGSAA  718 (772)
T ss_pred             HHHCCCCCCCCCCEECCCCCCCEEEECCCEEEEEECCCHH
T ss_conf             8733101232572302456554798268738986426355


No 451
>KOG0200 consensus
Probab=88.04  E-value=0.61  Score=26.47  Aligned_cols=52  Identities=17%  Similarity=0.381  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHEECCCC-----CCEEEEEEECCHHHH----HHHHHHHHHHHHH
Q ss_conf             867666778888655550212888-----723687640310468----8777788999875
Q gi|254780623|r  122 EFDDPIAAASIAQVHPAVVHDING-----YRKVAVKIIRPGVRK----RFFRDIQVMYLIA  173 (517)
Q Consensus       122 ~fdePlasASiaQVh~A~l~d~~~-----g~~VaVKV~rP~i~~----~i~~Dl~~l~~~~  173 (517)
                      .|.++++++-.|||++|.++....     ...||||.......+    .+...+.+|+.+.
T Consensus       299 ~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~l~~El~~m~~~g  359 (609)
T KOG0200         299 KLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELG  359 (609)
T ss_pred             CCCEEEEECCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             3112664236775887888513466666635999984365434788999999999999853


No 452
>KOG0669 consensus
Probab=87.55  E-value=0.5  Score=27.15  Aligned_cols=141  Identities=18%  Similarity=0.279  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             66778888655550212888723687640310468877778899987532114685433469179999999887888655
Q gi|254780623|r  126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL  205 (517)
Q Consensus       126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~  205 (517)
                      -++++..|.|.+|+-++  +|++|++|..                    +.+.- ..  .+...+         .+|++.
T Consensus        24 kigqGtfgeVFkAr~~n--~~kkvalkkv--------------------lmene-Ke--Gfpita---------lreiki   69 (376)
T KOG0669          24 KIGQGTFGEVFKARSKN--TGKKVALKKV--------------------LMENE-KE--GFPITA---------LREIKI   69 (376)
T ss_pred             HCCCCHHHHHHHHHHCC--CCCHHHHHHH--------------------HHHCC-CC--CCCHHH---------HHHHHH
T ss_conf             51774077899875257--6623578899--------------------87424-45--884788---------999899


Q ss_pred             HH----H-HHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHC-C-----CHHHHHHHHHHHH
Q ss_conf             99----9-9889872024467766430000102217833530024786324267733200-2-----2568999999999
Q gi|254780623|r  206 RL----E-AAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACG-H-----DLERLSVTLVQSF  274 (517)
Q Consensus       206 ~~----E-a~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~-~-----d~~~la~~l~~~~  274 (517)
                      ..    | ..|+-.+-+.++ .+...       +-+.--||+.+++.    |++.+-... +     .-+++...+.. -
T Consensus        70 L~~lkHenv~nliEic~tk~-Tp~~r-------~r~t~ylVf~~ceh----DLaGlLsn~~vr~sls~Ikk~Mk~Lm~-G  136 (376)
T KOG0669          70 LQLLKHENVVNLIEICRTKA-TPTNR-------DRATFYLVFDFCEH----DLAGLLSNRKVRFSLSEIKKVMKGLMN-G  136 (376)
T ss_pred             HHHHCCHHHHHHHHHHHHCC-CCCCC-------CCCEEEEEHHHHHH----HHHHHHCCCCCCCCHHHHHHHHHHHHH-H
T ss_conf             98724413787999986216-87656-------65136642676531----477774585200368999999999998-8


Q ss_pred             HHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             998974486617878622898028953574340312169
Q gi|254780623|r  275 LLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       275 ~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                      +.-|-...+.|-|..|.|++|+.||.+++-|||...-++
T Consensus       137 L~~iHr~kilHRDmKaaNvLIt~dgilklADFGlar~fs  175 (376)
T KOG0669         137 LYYIHRNKILHRDMKAANVLITKDGILKLADFGLARAFS  175 (376)
T ss_pred             HHHHHHHHHHHHCCCHHHEEECCCCEEEEECCCCCCCCC
T ss_conf             899987367650034754787378638860244431000


No 453
>PRK05250 S-adenosylmethionine synthetase; Validated
Probab=85.93  E-value=2.6  Score=21.51  Aligned_cols=80  Identities=20%  Similarity=0.378  Sum_probs=55.7

Q ss_pred             CHHCCCHHCCCCEEEEECCCCCCCC--HH--HHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEE
Q ss_conf             0000102217833530024786324--26--7733200225689999999999989744866178786228980289535
Q gi|254780623|r  227 VPKIDWNRTERDVITMEWIDGVKIS--DT--EKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIV  302 (517)
Q Consensus       227 vP~vy~~~st~~VLvmE~i~G~~i~--d~--~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~  302 (517)
                      +|-.-+|  ++.=.++||-+|.|+.  .+  ..-+..+++.+++-+.+.+...+.++....++.|   -+++|.|.|+.+
T Consensus       159 ~~~L~PD--~KsQVTveY~~~~P~ri~tIViS~QH~~~v~~~~l~~~i~e~VI~~vl~~~~l~~~---t~~~INPtG~Fv  233 (386)
T PRK05250        159 LPYLRPD--AKSQVTVEYEDGKPVRIDTVVLSTQHDPDISQEDLREDVIEEVIKPVLPAELLDPD---TKFLINPTGRFV  233 (386)
T ss_pred             CCCCCCC--CCEEEEEEEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCC---CEEEECCCCCEE
T ss_conf             8754788--73589999758985158899997526886799999998777789875223116878---679987999835


Q ss_pred             E----EECCHHEE
Q ss_conf             7----43403121
Q gi|254780623|r  303 A----VDMGITGR  311 (517)
Q Consensus       303 ~----lDfG~vg~  311 (517)
                      .    -|.|++||
T Consensus       234 iGGP~~D~GlTGR  246 (386)
T PRK05250        234 IGGPQGDAGLTGR  246 (386)
T ss_pred             ECCCCCCCCCCCC
T ss_conf             3786212455664


No 454
>COG2187 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.88  E-value=0.43  Score=27.64  Aligned_cols=111  Identities=16%  Similarity=0.135  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCC---CHHCCCHHCCCCEEEEECCCCCCCCH--HHHHHHHCCCHHHHHHHHHHH
Q ss_conf             7888655999988987202446776643---00001022178335300247863242--677332002256899999999
Q gi|254780623|r  199 TKMEMDLRLEAAAFSEMAENTVKDQGFR---VPKIDWNRTERDVITMEWIDGVKISD--TEKLRACGHDLERLSVTLVQS  273 (517)
Q Consensus       199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~---vP~vy~~~st~~VLvmE~i~G~~i~d--~~~l~~~~~d~~~la~~l~~~  273 (517)
                      ...|-+...=|+...+|...-..++.+.   =+.+.+.-..+|..-.+.--|.+++.  ++.++..   .+..-++....
T Consensus       123 ~lt~~~l~~lak~vA~fH~~a~~n~~i~~~G~~~~~~~~~~eN~~q~~~~l~~~~s~~~~d~i~~~---t~~f~e~~~~l  199 (337)
T COG2187         123 KLTESLLDALAKVVARFHQRAPRNPCIDSFGEVGAVAYRVRENFAQTRKYLGIVQSKQQIDRIEHM---TEEFLERHGPL  199 (337)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHHHHHHHHH
T ss_conf             998799999999999996048878520026877778757875599874103754688999999999---99999862089


Q ss_pred             HHHHHHHCCE---ECCCCCCCEEEEECCCCEEEEECCHHEECCHHHH
Q ss_conf             9998974486---6178786228980289535743403121698999
Q gi|254780623|r  274 FLLHTLRDGF---FHADLHPGNLFVDSKGYIVAVDMGITGRLSKRER  317 (517)
Q Consensus       274 ~~~qi~~~Gf---FHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r  317 (517)
                      |= -=...||   =|||.|-|||.+ -||++++.||   -+.++..|
T Consensus       200 f~-~R~~~g~IRecHGDLhl~ni~l-~dg~~~LFDC---IEFNd~fr  241 (337)
T COG2187         200 FD-RRIAEGFIRECHGDLHLRNICL-WDGEPALFDC---IEFNDPFR  241 (337)
T ss_pred             HH-HHHHCCCCEECCCCHHHCCEEE-ECCCCEEEEE---EECCCCCH
T ss_conf             99-8886597121544010055556-5486158877---52178512


No 455
>KOG2052 consensus
Probab=85.38  E-value=2.2  Score=22.07  Aligned_cols=143  Identities=19%  Similarity=0.281  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
                      |-++.+--|.|-|+..+    |+.|||||=...=++.-.++                       .++.+   ..+     
T Consensus       217 e~IGkGRyGEVwrG~wr----Ge~VAVKiF~srdE~SWfrE-----------------------tEIYq---Tvm-----  261 (513)
T KOG2052         217 EIIGKGRFGEVWRGRWR----GEDVAVKIFSSRDERSWFRE-----------------------TEIYQ---TVM-----  261 (513)
T ss_pred             EEECCCCCCCEEECCCC----CCCEEEEEECCCCHHHHHHH-----------------------HHHHH---HHH-----
T ss_conf             88627665205303112----77268998414643655537-----------------------88988---877-----


Q ss_pred             HHHHHHHHHHH-HCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHH---HHHH---HHHHHHHHH
Q ss_conf             59999889872-0244677664300001022178335300247863242677332002256---8999---999999998
Q gi|254780623|r  205 LRLEAAAFSEM-AENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLE---RLSV---TLVQSFLLH  277 (517)
Q Consensus       205 ~~~Ea~n~~~~-~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~---~l~~~~~~q  277 (517)
                      ++.|  |.-.| +...++.          .-+|+=.||.+|-+--++.|.  |....++.+   ++|.   .|+...--+
T Consensus       262 LRHE--NILgFIaaD~~~~----------gs~TQLwLvTdYHe~GSL~Dy--L~r~tv~~~~ml~LalS~AsGLaHLH~e  327 (513)
T KOG2052         262 LRHE--NILGFIAADNKDN----------GSWTQLWLVTDYHEHGSLYDY--LNRNTVTTEGMLKLALSIASGLAHLHME  327 (513)
T ss_pred             HCCC--HHHHHHHCCCCCC----------CCEEEEEEEEEECCCCCHHHH--HHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             3240--1454421145579----------815888875300457739888--7535577999999999986638888898


Q ss_pred             HHH----CCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHH
Q ss_conf             974----486617878622898028953574340312169899
Q gi|254780623|r  278 TLR----DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRE  316 (517)
Q Consensus       278 i~~----~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~  316 (517)
                      |+.    -+.=|-|.-.-||+|.++|.=++-|+|..-+-+...
T Consensus       328 I~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv~h~~~t  370 (513)
T KOG2052         328 IVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSDT  370 (513)
T ss_pred             HHCCCCCCHHHCCCCCCCCEEECCCCCEEEEECEEEEEECCCC
T ss_conf             8467888512104543252797658837986030147723668


No 456
>KOG0580 consensus
Probab=85.03  E-value=0.58  Score=26.64  Aligned_cols=151  Identities=16%  Similarity=0.280  Sum_probs=86.6

Q ss_pred             HHHHH-H-HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99867-6-667788886555502128887236876403104688777788999875321146854334691799999998
Q gi|254780623|r  120 YCEFD-D-PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ  197 (517)
Q Consensus       120 F~~fd-e-PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~  197 (517)
                      -.+|| . |++-|-.|+||-|+-+.  ++--||+||.--.-         +.                      ..+...
T Consensus        21 l~dfeigr~LgkgkFG~vYlarekk--s~~IvalKVlfKsq---------i~----------------------~~~v~~   67 (281)
T KOG0580          21 LDDFEIGRPLGKGKFGNVYLAREKK--SLFIVALKVLFKSQ---------IL----------------------KTQVEH   67 (281)
T ss_pred             HHHCCCCCCCCCCCCCCEEEEEECC--CCCEEEEEEEEHHH---------HH----------------------HHCCHH
T ss_conf             1121136654677566276764226--78479987301888---------88----------------------743065


Q ss_pred             HHHHHHHHHHH--HHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCC-CHHH--HHHHHCC-----CHHHHH
Q ss_conf             87888655999--988987202446776643000010221783353002478632-4267--7332002-----256899
Q gi|254780623|r  198 VTKMEMDLRLE--AAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKI-SDTE--KLRACGH-----DLERLS  267 (517)
Q Consensus       198 ~l~~ElD~~~E--a~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i-~d~~--~l~~~~~-----d~~~la  267 (517)
                      ++.+|+.-.--  --|+-+....|-++..             -.|.+||-.+-.+ .++-  ..+..+.     -..++|
T Consensus        68 qlrREiEIqs~L~hpnilrlY~~fhd~~r-------------iyLilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A  134 (281)
T KOG0580          68 QLRREIEIQSHLRHPNILRLYGYFHDSKR-------------IYLILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLA  134 (281)
T ss_pred             HHHHEEEEECCCCCCCHHHHHHHEECCCE-------------EEEEEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf             52102575304688327766451103422-------------68898744884189999755256646622558999998


Q ss_pred             HHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHH
Q ss_conf             999999999897448661787862289802895357434031216989999999
Q gi|254780623|r  268 VTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLA  321 (517)
Q Consensus       268 ~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~  321 (517)
                      ..+..+     ...++.|-|--|-|+++..+|.+-+-|||=--.-+...|..+.
T Consensus       135 ~Al~y~-----h~k~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p~~kR~tlc  183 (281)
T KOG0580         135 NALLYC-----HLKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSNKRKTLC  183 (281)
T ss_pred             HHHHHH-----HCCCCCCCCCCHHHHCCCCCCCEECCCCCCEEECCCCCCEEEE
T ss_conf             999875-----0387206989778736488897002678614343788740311


No 457
>KOG0590 consensus
Probab=84.43  E-value=0.95  Score=24.97  Aligned_cols=64  Identities=23%  Similarity=0.366  Sum_probs=44.1

Q ss_pred             EECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH-------HCCEECCCCCCCEEEEECCCCEEEEECCHHEEC
Q ss_conf             00247863242677332002256899999999999897-------448661787862289802895357434031216
Q gi|254780623|r  242 MEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL-------RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL  312 (517)
Q Consensus       242 mE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~-------~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l  312 (517)
                      |||+++ -+-..  +...    ..+-..=+++|++|+.       ..|+-|-|.-|-|+++...|.+-++|||...-.
T Consensus       400 mE~~~~-Dlf~~--~~~~----~~~~~~e~~c~fKqL~~Gv~y~h~~GiahrdlK~enll~~~~g~lki~Dfg~~~vf  470 (601)
T KOG0590         400 MEYCPY-DLFSL--VMSN----GKLTPLEADCFFKQLLRGVKYLHSMGLAHRDLKLENLLVTENGILKIIDFGAASVF  470 (601)
T ss_pred             CCCCCH-HHHHH--HHCC----CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEEECCCEEEEEECCCHHHC
T ss_conf             103637-78788--7604----54433033557888888889999728416437765468863770555305761421


No 458
>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172.
Probab=83.91  E-value=0.77  Score=25.67  Aligned_cols=159  Identities=16%  Similarity=0.195  Sum_probs=79.3

Q ss_pred             CCEEEEEEECC-H--HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH---------------HHHHHHHHHHHHHH
Q ss_conf             72368764031-0--468877778899987532114685433469179999---------------99988788865599
Q gi|254780623|r  146 YRKVAVKIIRP-G--VRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVR---------------ALEQVTKMEMDLRL  207 (517)
Q Consensus       146 g~~VaVKV~rP-~--i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------e~~~~l~~ElD~~~  207 (517)
                      +...-.|+..| +  =++.|..|..+=+.++.+-= -.|.  .+++.+.-+               -|++.+-+|=.=..
T Consensus        23 ~~~~~lKL~~P~~~s~~~~~~~E~~~sr~~~~LGi-pTP~--~~~lV~~g~sGR~G~~YE~I~gKrSfSRiis~~P~~L~   99 (234)
T TIGR02172        23 GKDILLKLYNPGECSDKETIKREFDASRKVFSLGI-PTPK--PIDLVEDGDSGRLGLIYELIKGKRSFSRIISDNPSRLE   99 (234)
T ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHHCCEEECCC-CCCC--CEEEEEECCCCCCCEEEEEEECCEEEEEEECCCCCHHH
T ss_conf             86325441768998888999999886210453168-8885--34778766876411178887175444233158832278


Q ss_pred             H-----HHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHC
Q ss_conf             9-----9889872024467766430000102217833530024786324267733200225689999999999989-744
Q gi|254780623|r  208 E-----AAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT-LRD  281 (517)
Q Consensus       208 E-----a~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi-~~~  281 (517)
                      |     |+.+++++.--.+-..+        .|++... .-.++-   +++.   .  .+.++    -++++++.| =..
T Consensus       100 E~~k~fAe~akkLH~~~cdt~~f--------~s~ke~~-~~~i~e---k~fv---p--~~~k~----~~~a~i~~vPd~~  158 (234)
T TIGR02172       100 EIAKIFAEMAKKLHSTKCDTSKF--------QSYKEKI-RKFIEE---KDFV---P--DDYKE----KARAFIEEVPDTK  158 (234)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCC--------CCHHHHH-HHHHHH---HCCC---C--HHHHH----HHHHHHHHCCCCC
T ss_conf             99999998768746866898766--------4578998-751033---2157---3--36899----9999986268988


Q ss_pred             CEECCCCCCCEEEEECCC-CEEEEECCHHEECCHHHHHHHHHHHHHHH
Q ss_conf             866178786228980289-53574340312169899999997669997
Q gi|254780623|r  282 GFFHADLHPGNLFVDSKG-YIVAVDMGITGRLSKRERRFLAEILYGFI  328 (517)
Q Consensus       282 GfFHaDPHpGNi~v~~dg-~i~~lDfG~vg~l~~~~r~~l~~l~~a~~  328 (517)
                      +..|+|.=+||+.++.+| +-.+||.|==|.=+|..=-++.=++..+.
T Consensus       159 tCLHGD~Q~GN~I~~g~~G~~yWIDlG~FgyG~P~fDlg~~f~~~~~~  206 (234)
T TIGR02172       159 TCLHGDLQIGNLITSGKGGKTYWIDLGDFGYGSPLFDLGLLFMFCNVL  206 (234)
T ss_pred             CCEECCCCCCCEEEECCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             831012354416882898841145657757797668999999985568


No 459
>TIGR00938 thrB_alt homoserine kinase; InterPro: IPR005280    Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase. .
Probab=83.69  E-value=3.3  Score=20.80  Aligned_cols=76  Identities=18%  Similarity=0.142  Sum_probs=56.1

Q ss_pred             HHCCEECCCCCCCEEEEECCC-CEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf             744866178786228980289-5357434031216989999999766999718727899999984126677893689999
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKG-YIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQA  357 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg-~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~  357 (517)
                      +=-|+.|||.=|=|++.+.|+ -=++|||                 ++|+.+.=...++=++-++++-.++   .-....
T Consensus       189 LP~gvIHADlF~DNVL~~g~~k~~g~IDF-----------------YfAC~~~~~YD~Ait~n~Wc~~ad~---~l~~~~  248 (312)
T TIGR00938       189 LPRGVIHADLFPDNVLFDGDKKVAGVIDF-----------------YFACDDAYAYDLAITVNAWCFEADD---KLDAAA  248 (312)
T ss_pred             CCCCEEEECCCCCCEEECCCCEEEEEEEH-----------------HHHCCCHHHHHHHHHHHHHHHHHCC---CHHHHH
T ss_conf             78623642247774565078744556511-----------------3133502578999999689862113---147999


Q ss_pred             HHHHHHHCCC-CCHHHCC
Q ss_conf             9985210013-3433311
Q gi|254780623|r  358 IRAIGEPIHG-QSSDVIS  374 (517)
Q Consensus       358 i~~~~~~~~~-~~~~~~~  374 (517)
                      .+.+++-|.. .|+++.+
T Consensus       249 ~kAll~GY~~~rpLs~eE  266 (312)
T TIGR00938       249 AKALLDGYERVRPLSEEE  266 (312)
T ss_pred             HHHHHHHHHCCCCCCHHH
T ss_conf             999873121147888878


No 460
>KOG0904 consensus
Probab=83.42  E-value=0.86  Score=25.30  Aligned_cols=24  Identities=29%  Similarity=0.585  Sum_probs=22.2

Q ss_pred             CCCCCCEEEEECCCCEEEEECCHH
Q ss_conf             787862289802895357434031
Q gi|254780623|r  286 ADLHPGNLFVDSKGYIVAVDMGIT  309 (517)
Q Consensus       286 aDPHpGNi~v~~dg~i~~lDfG~v  309 (517)
                      ||=|.-||||.++|++--||||-+
T Consensus       928 gDRHsDNIMvke~GqlFHIDFGHi  951 (1076)
T KOG0904         928 GDRHSDNIMVKETGQLFHIDFGHI  951 (1076)
T ss_pred             CCCCCCCEEEECCCCEEEEEHHHH
T ss_conf             554567557822785898870233


No 461
>KOG4279 consensus
Probab=83.31  E-value=3.4  Score=20.69  Aligned_cols=71  Identities=21%  Similarity=0.311  Sum_probs=52.0

Q ss_pred             EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH-------HCCEECCCCCCCEEEEEC-CCCEEEEECCHHE
Q ss_conf             35300247863242677332002256899999999999897-------448661787862289802-8953574340312
Q gi|254780623|r  239 VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL-------RDGFFHADLHPGNLFVDS-KGYIVAVDMGITG  310 (517)
Q Consensus       239 VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~-------~~GfFHaDPHpGNi~v~~-dg~i~~lDfG~vg  310 (517)
                      -+-||-++|-+++++-.-+....   +=-+.-+..|-+||+       +....|-|-..-|.+|.. .|-+-+=|||-..
T Consensus       648 kIFMEqVPGGSLSsLLrskWGPl---KDNEstm~fYtkQILeGLkYLHen~IVHRDIKGDNVLvNTySGvlKISDFGTsK  724 (1226)
T KOG4279         648 KIFMEQVPGGSLSSLLRSKWGPL---KDNESTMNFYTKQILEGLKYLHENKIVHRDIKGDNVLVNTYSGVLKISDFGTSK  724 (1226)
T ss_pred             EEEEECCCCCCHHHHHHHCCCCC---CCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCEEEEECCCEEEECCCCCCH
T ss_conf             88730079974899988514787---665567878899999886565424445303567707986034348851365302


Q ss_pred             EC
Q ss_conf             16
Q gi|254780623|r  311 RL  312 (517)
Q Consensus       311 ~l  312 (517)
                      +|
T Consensus       725 RL  726 (1226)
T KOG4279         725 RL  726 (1226)
T ss_pred             HH
T ss_conf             32


No 462
>COG3178 Predicted phosphotransferase related to Ser/Thr protein kinases [General function prediction only]
Probab=83.13  E-value=3.4  Score=20.64  Aligned_cols=71  Identities=21%  Similarity=0.331  Sum_probs=46.5

Q ss_pred             CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECC----CCEEEEECC--HHEECCHHHHH
Q ss_conf             478632426773320022568999999999998974486617878622898028----953574340--31216989999
Q gi|254780623|r  245 IDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSK----GYIVAVDMG--ITGRLSKRERR  318 (517)
Q Consensus       245 i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~d----g~i~~lDfG--~vg~l~~~~r~  318 (517)
                      .-|.++++-+..     .-+++-..++..-..|  ...+.|=|=||-|||.+.+    +++++|||-  |+|...=+.-.
T Consensus       171 ~~g~~l~~~~r~-----~~~aiwd~Lid~~~~~--~~vlvhRDfh~~NLmw~~~~~g~~rvGvlDFQDA~iGP~aYDvas  243 (351)
T COG3178         171 HLGRPLTDAERQ-----AWEAIWDGLIDSLLAQ--PKVLVHRDFHSRNLMWTADRAGADRVGVLDFQDALIGPIAYDVAS  243 (351)
T ss_pred             HHCCCCCHHHHH-----HHHHHHHHHHHHHHCC--CCEEEECCCCCCCCEECCCCCCCCCCCEEEHHHHHCCCCHHHHHH
T ss_conf             718988879999-----9999999998887428--705644134675423347766788876553244423851133999


Q ss_pred             HHHH
Q ss_conf             9997
Q gi|254780623|r  319 FLAE  322 (517)
Q Consensus       319 ~l~~  322 (517)
                      .+.+
T Consensus       244 L~~D  247 (351)
T COG3178         244 LLRD  247 (351)
T ss_pred             HHHH
T ss_conf             9762


No 463
>KOG1025 consensus
Probab=81.63  E-value=3.1  Score=20.99  Aligned_cols=203  Identities=16%  Similarity=0.139  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHHHHHHEECCCCCC----EEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             766677888865555021288872----3687640310468877778899987532114685433469179999999887
Q gi|254780623|r  124 DDPIAAASIAQVHPAVVHDINGYR----KVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT  199 (517)
Q Consensus       124 dePlasASiaQVh~A~l~d~~~g~----~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  199 (517)
                      +.-|+|+-.|-||++..-..  |+    +||+||.+-.--.  +.-..                                
T Consensus       701 ~kvLGsgAfGtV~kGiw~Pe--ge~vKipVaiKvl~~~t~~--~~s~e--------------------------------  744 (1177)
T KOG1025         701 DKVLGSGAFGTVYKGIWIPE--GENVKIPVAIKVLIEFTSP--KASIE--------------------------------  744 (1177)
T ss_pred             HCEECCCCCEEEEEEEEECC--CCEECCEEEEEEEECCCCC--HHHHH--------------------------------
T ss_conf             21213565315773058358--8623340588874116772--03699--------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-
Q ss_conf             8886559999889872024467766430000102217833530024786324267733200225689999999999989-
Q gi|254780623|r  200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT-  278 (517)
Q Consensus       200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi-  278 (517)
                           +..||-+|..+..-    .-++.=.|-  .++.=.||.+|+++-.+-|....+..     .+..+..-.|..|| 
T Consensus       745 -----~LdeAl~masldHp----nl~RLLgvc--~~s~~qlvtq~mP~G~LlDyvr~hr~-----~igsq~lLnw~~QIA  808 (1177)
T KOG1025         745 -----LLDEALRMASLDHP----NLLRLLGVC--MLSTLQLVTQLMPLGCLLDYVREHRD-----NIGSQDLLNWCYQIA  808 (1177)
T ss_pred             -----HHHHHHHHHCCCCC----HHHHHHHHC--CCCHHHHHHHHCCCCHHHHHHHHHHC-----CCCHHHHHHHHHHHH
T ss_conf             -----99999987427880----077776444--56438899886466349999997203-----536799999999999


Q ss_pred             ------HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHH
Q ss_conf             ------74486617878622898028953574340312169899999997669997187278999999841266778936
Q gi|254780623|r  279 ------LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRF  352 (517)
Q Consensus       279 ------~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~  352 (517)
                            =+.+..|.|.-.-|.+|.....+-.-|||...-+.++..+..+.    ...--...++=..+.....++..|.=
T Consensus       809 kgM~YLe~qrlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~~ey~~~----~gK~pikwmale~i~~~~~thqSDVW  884 (1177)
T KOG1025         809 KGMKYLEEQRLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDEKEYSAP----GGKVPIKWMALESIRIRKYTHQSDVW  884 (1177)
T ss_pred             HHHHHHHHCCHHHHHHHHHHEEECCCCEEEEEECCHHHCCCCCCCCCCCC----CCCCCCHHHHHHHHHCCCCCCHHHHH
T ss_conf             98878876541212023431441488757887504011267654211266----66547189988876526877510124


Q ss_pred             HHHHHHHHHH----HHCCCCCHHHCCHHHHHHHHHHHHHH
Q ss_conf             8999999852----10013343331135689999975452
Q gi|254780623|r  353 SFAQAIRAIG----EPIHGQSSDVISMGKLLTMLFEITEL  388 (517)
Q Consensus       353 ~~~~~i~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~  388 (517)
                      .|--.+=+++    .+|.+.+.+++      -++++...+
T Consensus       885 sfGVtiWElmTFGa~Py~gi~~~eI------~dlle~geR  918 (1177)
T KOG1025         885 SFGVTIWELMTFGAKPYDGIPAEEI------PDLLEKGER  918 (1177)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCHHHH------HHHHHCCCC
T ss_conf             4332698887347885689877886------688755234


No 464
>KOG0604 consensus
Probab=81.55  E-value=3.5  Score=20.60  Aligned_cols=72  Identities=18%  Similarity=0.285  Sum_probs=42.5

Q ss_pred             EEEEECCCCCCCCHHHHHHHHCC---CHHH---HHHHHHHHHHHHHHHCCEECCCCCCCEEEEECC---CCEEEEECCHH
Q ss_conf             35300247863242677332002---2568---999999999998974486617878622898028---95357434031
Q gi|254780623|r  239 VITMEWIDGVKISDTEKLRACGH---DLER---LSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSK---GYIVAVDMGIT  309 (517)
Q Consensus       239 VLvmE~i~G~~i~d~~~l~~~~~---d~~~---la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~d---g~i~~lDfG~v  309 (517)
                      .+|||.++|--+-.  .....|.   .-++   +.+.+..+. .-+-..+.=|-|.-|-|+++...   --+-+-|||..
T Consensus       135 LiVmE~meGGeLfs--riq~~g~~afTErea~eI~~qI~~Av-~~lH~~nIAHRDlKpENLLyt~t~~na~lKLtDfGFA  211 (400)
T KOG0604         135 LIVMECMEGGELFS--RIQDRGDQAFTEREASEIMKQIGLAV-RYLHSMNIAHRDLKPENLLYTTTSPNAPLKLTDFGFA  211 (400)
T ss_pred             EEEEECCCCHHHHH--HHHHCCCCCCHHHHHHHHHHHHHHHH-HHHHHCCHHHCCCCHHHEEEECCCCCCCEEECCCCCC
T ss_conf             87422121068899--99870666432878999999999999-9998642132137766634303789862572255520


Q ss_pred             EECC
Q ss_conf             2169
Q gi|254780623|r  310 GRLS  313 (517)
Q Consensus       310 g~l~  313 (517)
                      .+-.
T Consensus       212 K~t~  215 (400)
T KOG0604         212 KETQ  215 (400)
T ss_pred             CCCC
T ss_conf             2567


No 465
>PRK10593 hypothetical protein; Provisional
Probab=81.45  E-value=2  Score=22.47  Aligned_cols=128  Identities=16%  Similarity=0.215  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCHHCCC-----HHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999988987202446776643000010-----221783353002478632426773320022568999999999998974
Q gi|254780623|r  206 RLEAAAFSEMAENTVKDQGFRVPKIDW-----NRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLR  280 (517)
Q Consensus       206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy~-----~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~  280 (517)
                      ..||-.+.-.++    ...|.+|.||-     +--...||-||++.|+++.......+   .-+.+.+..++..+.    
T Consensus        55 ~qea~klsmLaR----~gtvr~P~VYg~~~~~q~p~~dvlLmErL~Gvsveap~rtp~---rwe~l~eqiveglLa----  123 (297)
T PRK10593         55 QQEAWKLSMLAR----SGTVRMPTVYGVVTHEEHPGPDVLLLERLRGVSVEAPARTPE---RWEQLKDQIVEGLLA----  123 (297)
T ss_pred             HHHHHHHHHHHC----CCCEECCEEEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCHH---HHHHHHHHHHHHHHH----
T ss_conf             999999888750----684321345687741247764010446751886557766878---999999999999988----


Q ss_pred             CCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC-CCCHHHHHHH--
Q ss_conf             4866178786228980289535743403121698999999976699971872789999998412667-7893689999--
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPR-HHNRFSFAQA--  357 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~-~~d~~~~~~~--  357 (517)
                      .  -|-|-|                 |+||..+...-.    ..-+...+-++-+-..+-.+....- -.|+..+.+.  
T Consensus       124 w--Hr~DS~-----------------Gcvg~vdstqen----~w~~wyqqrveVLw~tL~~~~~~~ltm~Dr~~L~r~r~  180 (297)
T PRK10593        124 W--HRQDSR-----------------GCVGAVDSTQEN----LWPSWYQQRVEVLWTTLNQFNNTGLTMQDRRILFRTRE  180 (297)
T ss_pred             H--HHCCCC-----------------CCCCCCCCCCCC----CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             7--732355-----------------750566312004----56899999999999998721787876157899999898


Q ss_pred             -HHHHHHHCCC
Q ss_conf             -9985210013
Q gi|254780623|r  358 -IRAIGEPIHG  367 (517)
Q Consensus       358 -i~~~~~~~~~  367 (517)
                       +..++..|.+
T Consensus       181 ~l~~lf~~fnd  191 (297)
T PRK10593        181 CLPALFEGFND  191 (297)
T ss_pred             HHHHHHCCCCC
T ss_conf             99999636799


No 466
>KOG0033 consensus
Probab=79.48  E-value=4.5  Score=19.73  Aligned_cols=95  Identities=19%  Similarity=0.296  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH----
Q ss_conf             99998898720244677664300001022178--335300247863242677332002256899999999999897----
Q gi|254780623|r  206 RLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL----  279 (517)
Q Consensus       206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~----  279 (517)
                      .+||+-...    ++. |  +|-+..+.+|+.  +-||-|+++|--+-.  ..    +.|....+.-+..|.+|++    
T Consensus        58 ~rEarIC~~----LkH-p--~IvrL~~sis~~~~~ylvFe~~~G~dl~~--eI----V~R~~ySEa~aSH~~~QiLeAl~  124 (355)
T KOG0033          58 EREARICRK----LQH-P--NIVRLHDSIQEESFHYLVFDLVTGGELFE--DI----VAREFYSEADASHCIQQILEALA  124 (355)
T ss_pred             HHHHHHHHH----CCC-C--CEEEHHHHHCCCCEEEEEEECCCCHHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             899999985----479-7--26414334231543578876155207999--99----99999889889999999999998


Q ss_pred             ---HCCEECCCCCCCEEEEECC---CCEEEEECCHHEECC
Q ss_conf             ---4486617878622898028---953574340312169
Q gi|254780623|r  280 ---RDGFFHADLHPGNLFVDSK---GYIVAVDMGITGRLS  313 (517)
Q Consensus       280 ---~~GfFHaDPHpGNi~v~~d---g~i~~lDfG~vg~l~  313 (517)
                         ..|..|-|..|-|+++-..   --+-+-|||..-.++
T Consensus       125 yCH~~~ivHRD~kP~nllLASK~~~A~vKL~~FG~Aie~~  164 (355)
T KOG0033         125 YCHSNGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVN  164 (355)
T ss_pred             HHHHCCEEECCCCCCCEEEEECCCCCCEEECCCEEEEEEC
T ss_conf             7643571114577201477424678863313640589837


No 467
>PHA00451 protein kinase
Probab=78.41  E-value=1.2  Score=24.15  Aligned_cols=177  Identities=17%  Similarity=0.221  Sum_probs=77.2

Q ss_pred             CHHHHHHHHHHHCCCCHHHHHHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHH-HHHHHHHHH
Q ss_conf             9899999875404788999999867--6667788886555502128887236876403104688777788-999875321
Q gi|254780623|r  100 PTNTARLSVASALKAPIEELYCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQ-VMYLIARIQ  176 (517)
Q Consensus       100 ~~~~v~~~ie~elg~~~~~~F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~-~l~~~~~~~  176 (517)
                      .+.+++..++---.-|+.++    |  +|+-.|-.|-.--+...||+   ..-   ---|.+   ..|.. .+.-+.+=+
T Consensus         2 nyTdiqarl~~Ik~LPI~eL----dkRQplLVaLaadiVN~ET~DG~---~T~---g~~gLE---~qD~W~tL~~~mrDa   68 (364)
T PHA00451          2 NYTDIQARLAAIKNLPICEL----DKRQPMLVALAADIVNAETQDGN---LTD---GNKGLE---YQDWWQTLGALMRDA   68 (364)
T ss_pred             CHHHHHHHHHHHHCCCHHHH----CCCCHHHHHHHHHHHCCCCCCCC---CCC---CCCCCH---HHHHHHHHHHHHHCC
T ss_conf             77889999999972882654----12341799999998535457886---565---543205---657999999998511


Q ss_pred             C-CCCCCCCCCCHHHHHHHHHHHHHHH--------HHHHHH--HHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEE
Q ss_conf             1-4685433469179999999887888--------655999--98898720244677664300001022178--335300
Q gi|254780623|r  177 E-KLLPSMRRLCFSAVVRALEQVTKME--------MDLRLE--AAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITME  243 (517)
Q Consensus       177 ~-~~~~~~~~~~~~~~~~e~~~~l~~E--------lD~~~E--a~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE  243 (517)
                      . ...+.+          .|+..-..|        .-|..|  .+....|.+...+  ..-||.||.---..  -..|.+
T Consensus        69 GF~~LGNG----------HFSAAysH~lLPgrVIKVGFKKEDSGAAYtAFCRMhQG--R~GIPnVY~v~RHaGCYTVVLD  136 (364)
T PHA00451         69 GFNLLGNG----------HFSAAYSHELLPGRVIKVGFKKEDSGAAYTAFCRMHQG--RAGIPNVYDVQRHAGCYTVVLD  136 (364)
T ss_pred             CHHEECCC----------CCHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCC--CCCCCCHHHHHHHCCCEEEEHH
T ss_conf             43000575----------30655303558985567112345654289999987069--8899707887650683577262


Q ss_pred             CCCCCCCCHHHHHHHHCCCHHHHHHH------------------HHHHHHHHH--HHCCEECCCCCCCEEEEECCCCEEE
Q ss_conf             24786324267733200225689999------------------999999989--7448661787862289802895357
Q gi|254780623|r  244 WIDGVKISDTEKLRACGHDLERLSVT------------------LVQSFLLHT--LRDGFFHADLHPGNLFVDSKGYIVA  303 (517)
Q Consensus       244 ~i~G~~i~d~~~l~~~~~d~~~la~~------------------l~~~~~~qi--~~~GfFHaDPHpGNi~v~~dg~i~~  303 (517)
                      ++.-+.-..-+...    ....+|..                  .++. +++|  |-.|.=-=|.|.||||.+++|+.++
T Consensus       137 ~L~~C~r~~nd~h~----~ya~~A~~~ie~~~~d~~~~~~~~~~FIET-CkmIRkFF~GIASFDmHSGNiMf~~~g~p~I  211 (364)
T PHA00451        137 YLNPCYRDSNDVHH----HYADAAREIIECDCFDAAEEAPISDEFIET-CKMIRKFFYGIASFDMHSGNIMFDKMGVPYI  211 (364)
T ss_pred             HCCCCCCCCCHHHH----HHHHHHHHHHHCCCCCHHHHCCCCHHHHHH-HHHHHHHHHHHHCCCCCCCCEEECCCCCEEE
T ss_conf             03544354424788----999999999845687366526776248999-9999999843310123578434678997455


Q ss_pred             EEC
Q ss_conf             434
Q gi|254780623|r  304 VDM  306 (517)
Q Consensus       304 lDf  306 (517)
                      -|-
T Consensus       212 TDP  214 (364)
T PHA00451        212 TDP  214 (364)
T ss_pred             CCC
T ss_conf             278


No 468
>PRK02946 aceK bifunctional isocitrate dehydrogenase kinase/phosphatase protein; Validated
Probab=77.54  E-value=3.3  Score=20.76  Aligned_cols=35  Identities=20%  Similarity=0.167  Sum_probs=13.5

Q ss_pred             HHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHE
Q ss_conf             98974486617878622898028953574340312
Q gi|254780623|r  276 LHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITG  310 (517)
Q Consensus       276 ~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg  310 (517)
                      +|+---+.|-||+-.-|+.|+..||++|+|+--++
T Consensus       452 k~laaaNIFpgDml~kNFGVtrhgrVvfYDYDei~  486 (580)
T PRK02946        452 KQLAAANIFPGDMLLKNFGVTRHGRVVFYDYDEIC  486 (580)
T ss_pred             HHHHHHCCCCCCCHHHCCCCCCCCEEEEECHHHHE
T ss_conf             99997368874201211574566559996105612


No 469
>KOG0606 consensus
Probab=76.69  E-value=5.3  Score=19.16  Aligned_cols=201  Identities=17%  Similarity=0.196  Sum_probs=98.4

Q ss_pred             HCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEEC
Q ss_conf             10045988999999988748878998999998754047889999998676667788886555502128887236876403
Q gi|254780623|r   76 TRPDLIGKKLSEDLALLQDKMDFFPTNTARLSVASALKAPIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIR  155 (517)
Q Consensus        76 tR~Dllp~~~~~eL~~Lqd~vpp~~~~~v~~~ie~elg~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~r  155 (517)
                      .+++++.-.|--|++ ||+.-+-.|+  ....+|-    ..+|.+.-.+..=+.|-     +....+...++-+.     
T Consensus        14 s~~~lits~yf~e~~-l~~~~~~~~~--parllec----epeefy~lle~aeg~~~-----~p~~~~s~~~~~as-----   76 (1205)
T KOG0606          14 SQPTLITSQYFYEMS-LQEAHEKSPS--PARLLEC----EPEEFYHLLEAAEGHAR-----KPMTDESPESRGAS-----   76 (1205)
T ss_pred             CCCCEEECCHHHHHH-HHHHHHCCCC--CHHHCCC----CHHHHHHHHHHHHCCCC-----CCCCCCCCCCCCCC-----
T ss_conf             777635420132202-0343113687--2443037----88998888876303455-----88999984446644-----


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCH
Q ss_conf             104688777788999875321146854334691--799999998878886559999889872024467766430000102
Q gi|254780623|r  156 PGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCF--SAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWN  233 (517)
Q Consensus       156 P~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~--~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~  233 (517)
                        ...-.+.|+..++.+..=+  +   ++.+..  .+.-+-|..-+.++   ..-++|...    |++++.|+       
T Consensus        77 --~~~p~e~df~~IklisngA--y---gavylvrh~~trqrfa~kiNkq---~lilRnilt----~a~npfvv-------  135 (1205)
T KOG0606          77 --RRAPSESDFNTIKLISNGA--Y---GAVYLVRHKETRQRFAMKINKQ---NLILRNILT----FAGNPFVV-------  135 (1205)
T ss_pred             --CCCCCCCCCCEEEEECCCC--C---CCEEEEECCCCCCCHHHCCCCC---CHHHHCCCC----CCCCCCEE-------
T ss_conf             --4578746665368621688--7---7525642322133210033401---033422322----26786300-------


Q ss_pred             HCCCCEEEEECCCCCCCCHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC
Q ss_conf             2178335300247863242677-332002256899999999999897448661787862289802895357434031216
Q gi|254780623|r  234 RTERDVITMEWIDGVKISDTEK-LRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL  312 (517)
Q Consensus       234 ~st~~VLvmE~i~G~~i~d~~~-l~~~~~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l  312 (517)
                                       .|... ++..|--+-..  .+.--|+   -.+|..|.|.-|-|++|+.=|.+-+-|||...  
T Consensus       136 -----------------gDc~tllk~~g~lPvdm--vla~Eyl---h~ygivhrdlkpdnllIT~mGhiKlTDfgLsk--  191 (1205)
T KOG0606         136 -----------------GDCATLLKNIGPLPVDM--VLAVEYL---HSYGIVHRDLKPDNLLITSMGHIKLTDFGLSK--  191 (1205)
T ss_pred             -----------------CHHHHHCCCCCCCCCHH--HHHHHHH---CCCCEECCCCCCCCCEEEECCCCCCCCHHHHH--
T ss_conf             -----------------01232114688875125--6776763---15770057888975144430433224024656--


Q ss_pred             CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             9899999997669997187278999999841
Q gi|254780623|r  313 SKRERRFLAEILYGFISRDYQRVADVHFEAG  343 (517)
Q Consensus       313 ~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg  343 (517)
                           .++..+-..+..++.+..++-+.+=+
T Consensus       192 -----~GLms~atnl~eg~I~k~t~Ef~dKq  217 (1205)
T KOG0606         192 -----KGLMSLATNLKEGHIEKDTHEFQDKQ  217 (1205)
T ss_pred             -----HHHHHCCCHHHHCCHHHHHHHHHHCC
T ss_conf             -----54430441232022377777741035


No 470
>KOG0614 consensus
Probab=76.62  E-value=5.4  Score=19.14  Aligned_cols=88  Identities=24%  Similarity=0.367  Sum_probs=46.1

Q ss_pred             HHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCC-C--HH-HHHHHHHHHHHHHHHHCCEECCCC
Q ss_conf             8720244677664300001022178335300247863242677332002-2--56-899999999999897448661787
Q gi|254780623|r  213 SEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGH-D--LE-RLSVTLVQSFLLHTLRDGFFHADL  288 (517)
Q Consensus       213 ~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~-d--~~-~la~~l~~~~~~qi~~~GfFHaDP  288 (517)
                      -++.+-|+++++|+.             -||-+=|--+-.+  +...|. |  .. -.+.-.+++| .-+-..|+.--|.
T Consensus       483 vrLYrTfrd~kyvYm-------------LmEaClGGElWTi--LrdRg~Fdd~tarF~~acv~EAf-eYLH~k~iIYRDL  546 (732)
T KOG0614         483 VRLYRTFRDSKYVYM-------------LMEACLGGELWTI--LRDRGSFDDYTARFYVACVLEAF-EYLHRKGIIYRDL  546 (732)
T ss_pred             HHHHHHHCCCHHHHH-------------HHHHHCCCHHHHH--HHHCCCCCCCHHHHHHHHHHHHH-HHHHHCCCEECCC
T ss_conf             999987434423446-------------5886627516466--44127755520235577899999-9998648044147


Q ss_pred             CCCEEEEECCCCEEEEECCHHEECCHHH
Q ss_conf             8622898028953574340312169899
Q gi|254780623|r  289 HPGNLFVDSKGYIVAVDMGITGRLSKRE  316 (517)
Q Consensus       289 HpGNi~v~~dg~i~~lDfG~vg~l~~~~  316 (517)
                      .|-|++++.+|-+-+.|||....+....
T Consensus       547 KPENllLd~~Gy~KLVDFGFAKki~~g~  574 (732)
T KOG0614         547 KPENLLLDNRGYLKLVDFGFAKKIGSGR  574 (732)
T ss_pred             CHHHEEECCCCCEEEEEHHHHHHHCCCC
T ss_conf             7566254568856775104677751688


No 471
>PRK00029 hypothetical protein; Validated
Probab=76.27  E-value=5.5  Score=19.08  Aligned_cols=130  Identities=14%  Similarity=0.118  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHH-----------HHHHCCCH
Q ss_conf             6899999999999897448661787862289802895357434031216989999999766-----------99971872
Q gi|254780623|r  264 ERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEIL-----------YGFISRDY  332 (517)
Q Consensus       264 ~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~-----------~a~~~~D~  332 (517)
                      +.++++-++.. -+-...||.||=+.--|.-|.-.    =||||=++-++...-.....-+           =.++.-|-
T Consensus       227 ~~v~~r~A~lv-A~W~~vGFvHGVmNTDNmsI~Ge----TiDYGP~aFmd~ydp~~v~n~~D~~GRYaf~nQP~i~~WNL  301 (487)
T PRK00029        227 EEVVERTAELI-AQWQAVGFVHGVMNTDNMSILGE----TFDYGPYGFLDDYDPGFTCNHSDHQGRYAFGNQPAIALWNL  301 (487)
T ss_pred             HHHHHHHHHHH-HHHHHHCCCCCCCCCCCCEEEEE----ECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             99999999999-99998622045123688600134----23677601254358666665638987743577759999999


Q ss_pred             HHHHHHHHHHHCCCCCCCHHHHH-----------HHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             78999999841266778936899-----------9999852100133433311356899999754527971288899999
Q gi|254780623|r  333 QRVADVHFEAGYVPRHHNRFSFA-----------QAIRAIGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQ  401 (517)
Q Consensus       333 ~~~~~~l~~lg~~~~~~d~~~~~-----------~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~~~ll~  401 (517)
                      .++++++.-+-      +.+.++           +.....+..-.|.+-.+-.=.+++.++++++..+++    +|+..+
T Consensus       302 ~~LaeaL~pLi------~~~~~~~~L~~f~~~~~~~~~~~m~~KLGL~~~~~~D~~LI~~LL~lM~~~~~----DyT~~F  371 (487)
T PRK00029        302 QRLAQALLPLI------AVEALQAALDRFGDAYQAAYLRRMRAKLGLFTEQEEDEALVNALLALMARSGA----DYTLTF  371 (487)
T ss_pred             HHHHHHHHHHH------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC----CHHHHH
T ss_conf             99999878761------83689999987899999999999999638887782079999999999998099----668999


Q ss_pred             HHHHHHH
Q ss_conf             9999988
Q gi|254780623|r  402 KTMVVVE  408 (517)
Q Consensus       402 r~l~~lE  408 (517)
                      |.|+..+
T Consensus       372 R~Ls~~~  378 (487)
T PRK00029        372 RRLSLLE  378 (487)
T ss_pred             HHHHCCC
T ss_conf             9985577


No 472
>KOG4278 consensus
Probab=74.50  E-value=3.9  Score=20.23  Aligned_cols=123  Identities=20%  Similarity=0.267  Sum_probs=75.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHCCCHHCCC---CEEEEECCCCCCCCHH
Q ss_conf             4685433469179999999887888655999988987202-44677664300001022178---3353002478632426
Q gi|254780623|r  178 KLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAE-NTVKDQGFRVPKIDWNRTER---DVITMEWIDGVKISDT  253 (517)
Q Consensus       178 ~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~-~~~~~~~v~vP~vy~~~st~---~VLvmE~i~G~~i~d~  253 (517)
                      -+.+..+++++.-.|..+.....+--.|..||+-|+.++. |+-.-         -..||.   --++.||+.--.+-|.
T Consensus       283 VYeGvWKkyslTvAVKtLKEDtMeveEFLkEAAvMKeikHpNLVqL---------LGVCT~EpPFYIiTEfM~yGNLLdY  353 (1157)
T KOG4278         283 VYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQL---------LGVCTHEPPFYIITEFMCYGNLLDY  353 (1157)
T ss_pred             EEEEEEECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH---------HHHHCCCCCEEEEEEECCCCCHHHH
T ss_conf             2232221120453233331000569999999898876048108777---------5011268970798750237419999


Q ss_pred             HHHHHHCCCHHHHHHHH-------HHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             77332002256899999-------9999998974486617878622898028953574340312169
Q gi|254780623|r  254 EKLRACGHDLERLSVTL-------VQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       254 ~~l~~~~~d~~~la~~l-------~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
                        |.++  ++..+-...       +.+-+.-+=..+|+|-|.-.-|-+|.++.-+-.-|||+..-+.
T Consensus       354 --LRec--nr~ev~avvLlyMAtQIsSaMeYLEkknFIHRDLAARNCLVgEnhiVKvADFGLsRlMt  416 (1157)
T KOG4278         354 --LREC--NRSEVPAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHIVKVADFGLSRLMT  416 (1157)
T ss_pred             --HHHH--CHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHC
T ss_conf             --9872--34426655789999888889999986321555456551211346357752111566513


No 473
>PRK10345 hypothetical protein; Provisional
Probab=74.42  E-value=6  Score=18.74  Aligned_cols=93  Identities=12%  Similarity=0.089  Sum_probs=57.6

Q ss_pred             CCCCCCHHCCCHHCCCC--EEEEECCCC---CCCCHHHH-HHHHCCCHH-HHHHHHHHHHHHHHHHCCEECCCCCCCEEE
Q ss_conf             76643000010221783--353002478---63242677-332002256-899999999999897448661787862289
Q gi|254780623|r  222 DQGFRVPKIDWNRTERD--VITMEWIDG---VKISDTEK-LRACGHDLE-RLSVTLVQSFLLHTLRDGFFHADLHPGNLF  294 (517)
Q Consensus       222 ~~~v~vP~vy~~~st~~--VLvmE~i~G---~~i~d~~~-l~~~~~d~~-~la~~l~~~~~~qi~~~GfFHaDPHpGNi~  294 (517)
                      .++-++|+.|-.--|.-  =+|.|.|..   ..--.++. +...+.... .-.+..++.|.+-++++...-.|.+|+||.
T Consensus        58 ~~w~~lar~yG~VeT~~G~G~v~ElI~d~dG~ia~TLe~yl~~~~~~e~~~~i~~al~~f~~~L~~~~Ilt~dl~p~NIV  137 (210)
T PRK10345         58 IDWSMIPRYYGTVETDCGTGYVYDLIADFDGSPSITLTEFAEQCRYEEDAAQLRQLLKKLKRYLLDNRIVTMSLKPQNIL  137 (210)
T ss_pred             CCCHHCCCEEEEEECCCCEEEEEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCCCCCEEE
T ss_conf             98022165101575277327999987779989114399999807987569999999999999999769145367615279


Q ss_pred             EEC--C--CCEEEEE-CCHHEECCH
Q ss_conf             802--8--9535743-403121698
Q gi|254780623|r  295 VDS--K--GYIVAVD-MGITGRLSK  314 (517)
Q Consensus       295 v~~--d--g~i~~lD-fG~vg~l~~  314 (517)
                      +..  +  .+++++| +|...-+|=
T Consensus       138 ~~~~~~~~~~lviIDGlG~~~fIPL  162 (210)
T PRK10345        138 CQRISESEVIPVVCDNIGESTFIPL  162 (210)
T ss_pred             EEECCCCCEEEEEEECCCCCCEEEH
T ss_conf             9853799768999969997355218


No 474
>TIGR01212 TIGR01212 radical SAM protein, TIGR01212 family; InterPro: IPR005911    This uncharacterised protein family shows significant similarity to IPR005910 from INTERPRO, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain..
Probab=74.31  E-value=2.1  Score=22.34  Aligned_cols=168  Identities=16%  Similarity=0.186  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHH-CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCH--------HHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             78999999960-42899999999710045988999999988748878998--------9999987540478899999986
Q gi|254780623|r   53 SDRLARAMNRL-GPSYVKMGQFLATRPDLIGKKLSEDLALLQDKMDFFPT--------NTARLSVASALKAPIEELYCEF  123 (517)
Q Consensus        53 ~~rlr~~le~L-GptfiKlGQ~lstR~Dllp~~~~~eL~~Lqd~vpp~~~--------~~v~~~ie~elg~~~~~~F~~f  123 (517)
                      .+.||...|.- ---=| +|==.|||||.+|++..+=|+.+.++-=-+.-        +.....|.|.-+      |+.|
T Consensus        95 ve~Lk~~y~~aL~~~~v-VGlsvgTRPDC~P~~VLDlL~ey~~~GyevWvELGLQtah~~TL~~INRgHd------~~~y  167 (307)
T TIGR01212        95 VEVLKEMYEQALSEDDV-VGLSVGTRPDCVPDEVLDLLAEYKERGYEVWVELGLQTAHDRTLKKINRGHD------FACY  167 (307)
T ss_pred             HHHHHHHHHHHHHHCCE-EEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHCCCCC------HHHH
T ss_conf             68888999987632780-5775368898774789999999954975899960535655899998514378------7899


Q ss_pred             HHHHHHHHHHHHHHHHEECCCCCCEEEEEEEC--CHHHHHHHHHHHHHHHHHHHH-C--CCCCCCCCCCHHHHHHHHHHH
Q ss_conf             76667788886555502128887236876403--104688777788999875321-1--468543346917999999988
Q gi|254780623|r  124 DDPIAAASIAQVHPAVVHDINGYRKVAVKIIR--PGVRKRFFRDIQVMYLIARIQ-E--KLLPSMRRLCFSAVVRALEQV  198 (517)
Q Consensus       124 dePlasASiaQVh~A~l~d~~~g~~VaVKV~r--P~i~~~i~~Dl~~l~~~~~~~-~--~~~~~~~~~~~~~~~~e~~~~  198 (517)
                      -+        -|-+++-+    |-+|..=|.=  ||  +..+.=+...+.++.+= +  +..| +-.+.=+.+.+.+.+-
T Consensus       168 ~~--------a~~~~~kr----GikVC~H~I~GLPg--E~~~~~~eTak~~~~l~vdGiKiH~-LhvvkGt~m~k~Y~~G  232 (307)
T TIGR01212       168 VD--------AVKRARKR----GIKVCSHVILGLPG--EDREEMLETAKIVASLDVDGIKIHP-LHVVKGTKMAKQYEKG  232 (307)
T ss_pred             HH--------HHHHHHHC----CCEEEEEEEECCCC--CCHHHHHHHHHHHHHCCCCEEEEEE-EEEEECCHHHHHHHCC
T ss_conf             99--------99999765----98899998742898--8888999999999837988488720-1787357578875457


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCC-CCCCCCHHCCCH-HCCCCEEEEECC
Q ss_conf             78886559999889872024467-766430000102-217833530024
Q gi|254780623|r  199 TKMEMDLRLEAAAFSEMAENTVK-DQGFRVPKIDWN-RTERDVITMEWI  245 (517)
Q Consensus       199 l~~ElD~~~Ea~n~~~~~~~~~~-~~~v~vP~vy~~-~st~~VLvmE~i  245 (517)
                      =.+=|   .+=...+...+.+.. .|.|.|=++-.+ ---+..|-=+|.
T Consensus       233 ~~~~l---~~e~Y~~~~~d~le~lpP~vv~HRi~~dk~~~~~~i~P~W~  278 (307)
T TIGR01212       233 ELKTL---SLEEYISLACDFLEHLPPEVVVHRISGDKAPRETLIAPEWC  278 (307)
T ss_pred             CEEEC---CHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEECCCCH
T ss_conf             40104---76779999999985089855998412777884515567402


No 475
>pfam04655 APH_6_hur Aminoglycoside/hydroxyurea antibiotic resistance kinase. The aminoglycoside phosphotransferases achieve inactivation of their antibiotic substrates by phosphorylation utilising ATP. Likewise hydroxyurea is inactivated by phosphorylation of the hydroxy group in the hydroxylamine moiety.
Probab=74.28  E-value=1.1  Score=24.50  Aligned_cols=33  Identities=24%  Similarity=0.339  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHH
Q ss_conf             766677888865555021288872368764031046
Q gi|254780623|r  124 DDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVR  159 (517)
Q Consensus       124 dePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~  159 (517)
                      +.|...++-+.|..++..|   |.++|.|+..|+-+
T Consensus         7 dg~~~~g~~s~V~pV~~~d---G~pAvLKl~~p~~~   39 (253)
T pfam04655         7 DGEVAATHSSLVLPVLRAD---GTPAVLKLAKPREE   39 (253)
T ss_pred             CCCCCCCCCEEEEEEECCC---CCEEEEEECCCCCC
T ss_conf             8877777625899998689---99558883589764


No 476
>pfam06315 AceK Isocitrate dehydrogenase kinase/phosphatase (AceK). This family consists of several bacterial isocitrate dehydrogenase kinase/phosphatase (AceK) proteins (EC:2.7.1.116).
Probab=73.32  E-value=4.5  Score=19.71  Aligned_cols=41  Identities=20%  Similarity=0.190  Sum_probs=26.1

Q ss_pred             HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             99989744866178786228980289535743403121698
Q gi|254780623|r  274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
                      -.+|+---+.|-||+-.-|+.|+..||++|+|+--++.+++
T Consensus       438 aIk~laaaNIFpgDml~KNFGVtrhgrVvfYDYDei~~ltd  478 (562)
T pfam06315       438 AIKQLAAANIFPGDMLLKNFGVTRHGRVVFYDYDEIEYLTD  478 (562)
T ss_pred             HHHHHHHHCCCCCCCCHHCCCCCCCCEEEEEEHHHHHHHCC
T ss_conf             99999983588753101016734565599960267411100


No 477
>KOG1033 consensus
Probab=72.02  E-value=1.1  Score=24.34  Aligned_cols=74  Identities=23%  Similarity=0.395  Sum_probs=46.8

Q ss_pred             EEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH----CCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             53002478632426773320022568999999999998974----48661787862289802895357434031216989
Q gi|254780623|r  240 ITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLR----DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       240 LvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~----~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                      +.|++++--.+.|--.-...+. ...  ..+..-+++|+-.    -|+.|=|.-|+||+...|+.+-+.|||.+...+..
T Consensus       333 I~Mn~c~~~tledWl~rr~~~e-~~s--~s~~~~~~~q~~~~~~yk~~ihrdlkp~nif~~~d~q~kIgDFgl~ts~~~~  409 (516)
T KOG1033         333 IQMNLCEKETLEDWLRRRRTGE-ERS--LSLMLDIFKQIAPAVEYKGLIHRDLKPSNIFFSDDDQLKIGDFGLVTSQDKD  409 (516)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCC-CCC--HHHHHHHHHHHCCCHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHEEECCCC
T ss_conf             4555543656888861787655-554--0478889986164021033355533532343454204665444401203457


Q ss_pred             H
Q ss_conf             9
Q gi|254780623|r  316 E  316 (517)
Q Consensus       316 ~  316 (517)
                      -
T Consensus       410 ~  410 (516)
T KOG1033         410 E  410 (516)
T ss_pred             C
T ss_conf             7


No 478
>KOG4257 consensus
Probab=71.75  E-value=6.9  Score=18.29  Aligned_cols=141  Identities=18%  Similarity=0.221  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCE--EEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             666778888655550212888723--687640310468877778899987532114685433469179999999887888
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRK--VAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME  202 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~--VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E  202 (517)
                      +-|+.|-.|-||.|+..+...|+.  ||||+-+-+-                     .|+       +           -
T Consensus       395 r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~---------------------t~d-------~-----------t  435 (974)
T KOG4257         395 RLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDC---------------------TPD-------D-----------T  435 (974)
T ss_pred             HHHCCCCCCCEEEEEECCCCCCCCEEEEEEHHCCCC---------------------CHH-------H-----------H
T ss_conf             762677455255567506656861465421013679---------------------802-------6-----------8


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH---
Q ss_conf             65599998898720244677664300001022178335300247863242677332002256899999999999897---
Q gi|254780623|r  203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL---  279 (517)
Q Consensus       203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~---  279 (517)
                      =.|..||--|+.|..    ..-|+.=.|..+  .+-.+|||-..   +.++...-+.+.+.-.+  ..+-.|..|+-   
T Consensus       436 ekflqEa~iMrnfdH----phIikLIGv~~e--~P~WivmEL~~---~GELr~yLq~nk~sL~l--~tL~ly~~Qi~tal  504 (974)
T KOG4257         436 EKFLQEASIMRNFDH----PHIIKLIGVCVE--QPMWIVMELAP---LGELREYLQQNKDSLPL--RTLTLYCYQICTAL  504 (974)
T ss_pred             HHHHHHHHHHHHCCC----CCHHHEEEEEEC--CCEEEEEECCC---CHHHHHHHHHCCCCCHH--HHHHHHHHHHHHHH
T ss_conf             999999999871788----211102566504--64267775142---46689999844353307--89999999998999


Q ss_pred             ----HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             ----448661787862289802895357434031216989
Q gi|254780623|r  280 ----RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       280 ----~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
                          -..|.|-|--.-||+|.....+-+-|||.-..++.+
T Consensus       505 aYLeSkrfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~  544 (974)
T KOG4257         505 AYLESKRFVHRDIAARNILVSSPQCVKLADFGLSRYLEDD  544 (974)
T ss_pred             HHHHHHCHHHHHHHHHHEEECCCCEEEECCCCHHHHCCCC
T ss_conf             9988611132323555345137441550002414322430


No 479
>cd05124 AFK Actin-Fragmin Kinase (AFK); catalytic domain. The AFK catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). AFK is found in slime molds, ciliates, and flowering plants. It catalyzes the transfer of the gamma-phosphoryl group from ATP specifically to threonine residues in the actin-fragmin complex. The phosphorylation sites are located at a minor contact site for DNase I and at an actin-actin contact site. Fragmin is an actin-binding protein that functions as a regulator of the microfilament system. It interferes with the growth of F-actin by severing actin filaments and capping their ends. The phosphorylation of the actin-fragmin complex inhibits its nucleation activity and results in calcium-dependent capping activity. Thus, AFK plays a role in regulating ac
Probab=70.18  E-value=4.5  Score=19.70  Aligned_cols=148  Identities=15%  Similarity=0.200  Sum_probs=76.7

Q ss_pred             CEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             23687640310468877778899987532114685433469179999999887888655999988987202446776643
Q gi|254780623|r  147 RKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFR  226 (517)
Q Consensus       147 ~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~  226 (517)
                      ..+||| .-|.|.    .+. -...++.++.--.|.+|.+...+.  ||.....          |++.++.    ....-
T Consensus        23 g~iVvK-~s~tia----~E~-y~~~L~~~Lgv~~Pq~R~l~~~s~--E~~~m~~----------~L~~a~~----~~~~l   80 (238)
T cd05124          23 GAIVVK-SSPNIA----SEY-FLSKLAKILGLPIPQMRVLEWNSS--EFTEMSE----------NLLKASS----EDECL   80 (238)
T ss_pred             CEEEEE-CCCCHH----HHH-HHHHHHHHHCCCCCCEEEECCCCH--HHHHHHH----------HHHHHHC----CCHHH
T ss_conf             679997-377357----999-999999985999982586505687--8999999----------9999860----35267


Q ss_pred             CHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEC-----------CCCCCCEEEE
Q ss_conf             00001022178335300247863242677332002256899999999999897448661-----------7878622898
Q gi|254780623|r  227 VPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFH-----------ADLHPGNLFV  295 (517)
Q Consensus       227 vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFH-----------aDPHpGNi~v  295 (517)
                      -+++=-++.-...+.|||++|.++.......+.+..-++.+..+-..    +--|=|.|           --=|+-||++
T Consensus        81 ~~~i~~el~~a~flimEYvpG~~l~~~~~~~~~~~~~~~~l~~LG~i----i~lDi~inN~DRlPl~~w~~~GN~~NIl~  156 (238)
T cd05124          81 ERRITLELEKAYLLIMEYVPGITLFKMTTHRASEYKGEERLIQLGKI----IALDIFINNSDRLPLAIWRNSGNFDNIIL  156 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCHHHHHHHCCE----EEEEEEECCCCCCCCCCCCCCCCHHHEEE
T ss_conf             79999998765654887607964002245345665567899972570----79898741787677553158888504799


Q ss_pred             EC----CC-CEEEE---------ECCHHEECCHHHHHHH
Q ss_conf             02----89-53574---------3403121698999999
Q gi|254780623|r  296 DS----KG-YIVAV---------DMGITGRLSKRERRFL  320 (517)
Q Consensus       296 ~~----dg-~i~~l---------DfG~vg~l~~~~r~~l  320 (517)
                      ..    +| ...++         |++.++.+++..+..-
T Consensus       157 ~~~~~~~~~~~~l~d~n~~~~~~~~e~i~~~~~~~~~k~  195 (238)
T cd05124         157 KDIPNKNGATEDLIDSNNTSLNNHYETIRSLDRTLIAKP  195 (238)
T ss_pred             ECCCCCCCCEEEECCCCCCCCCCCCEEEEEECHHHHHCC
T ss_conf             631587886785012655335688103665133454076


No 480
>KOG0695 consensus
Probab=70.06  E-value=7.5  Score=18.03  Aligned_cols=157  Identities=17%  Similarity=0.202  Sum_probs=74.4

Q ss_pred             CCEEEEECCCCCCCCHHHHHHHHCCCHHH-----HHHH-HHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHE
Q ss_conf             83353002478632426773320022568-----9999-99999998974486617878622898028953574340312
Q gi|254780623|r  237 RDVITMEWIDGVKISDTEKLRACGHDLER-----LSVT-LVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITG  310 (517)
Q Consensus       237 ~~VLvmE~i~G~~i~d~~~l~~~~~d~~~-----la~~-l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg  310 (517)
                      +-..|.||+.|--+-=.  +..+..-+++     -|+. ++-.|   +-+-|..--|..--|.+++..|.|-+-|+||+.
T Consensus       325 rlffvieyv~ggdlmfh--mqrqrklpeeharfys~ei~lal~f---lh~rgiiyrdlkldnvlldaeghikltdygmck  399 (593)
T KOG0695         325 RLFFVIEYVNGGDLMFH--MQRQRKLPEEHARFYSAEICLALNF---LHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCK  399 (593)
T ss_pred             EEEEEEEEECCCCEEEE--HHHHHCCCHHHHHHHHHHHHHHHHH---HHHCCEEEEECCCCCEEECCCCCEEECCCCHHH
T ss_conf             37999997248533665--6534138487742424669999988---865471553032120677266846532042243


Q ss_pred             E-CCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH---H--CCCCCHHHCCHHHHHHHHH
Q ss_conf             1-6989-999999766999718727899999984126677893689999998521---0--0133433311356899999
Q gi|254780623|r  311 R-LSKR-ERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRAIGE---P--IHGQSSDVISMGKLLTMLF  383 (517)
Q Consensus       311 ~-l~~~-~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i~~~~~---~--~~~~~~~~~~~~~~~~~l~  383 (517)
                      + +.+. +...+.        +-..-++-.++.=....-.+|--.+---+-+++.   +  +.|..-.+.+..   ..++
T Consensus       400 e~l~~gd~tstfc--------gtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n~d~nte---dylf  468 (593)
T KOG0695         400 EGLGPGDTTSTFC--------GTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNPDMNTE---DYLF  468 (593)
T ss_pred             CCCCCCCCCCCCC--------CCCCCCCHHHHCCCCCCCEEHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHH---HHHH
T ss_conf             1789986434335--------8975456365356424730219999999999971799634415788663437---7899


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             7545279712888999999999988499
Q gi|254780623|r  384 EITELFDMMTRPELVMLQKTMVVVEGVA  411 (517)
Q Consensus       384 ~~~~~~~~~~P~~~~ll~r~l~~lEG~~  411 (517)
                      ++.-...+++|+.+.  .|+-.+|-|..
T Consensus       469 qvilekqiriprsls--vkas~vlkgfl  494 (593)
T KOG0695         469 QVILEKQIRIPRSLS--VKASHVLKGFL  494 (593)
T ss_pred             HHHHHHHCCCCCCEE--HHHHHHHHHHH
T ss_conf             999998606772100--14677888762


No 481
>PTZ00104 S-adenosylmethionine synthetase; Provisional
Probab=69.89  E-value=7.5  Score=18.00  Aligned_cols=138  Identities=16%  Similarity=0.194  Sum_probs=73.7

Q ss_pred             EEEEEEECCHHHHHHHHHHHHHHHH-------HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCC
Q ss_conf             3687640310468877778899987-------532114685433469179999999887888655999-98898720244
Q gi|254780623|r  148 KVAVKIIRPGVRKRFFRDIQVMYLI-------ARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLE-AAAFSEMAENT  219 (517)
Q Consensus       148 ~VaVKV~rP~i~~~i~~Dl~~l~~~-------~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~E-a~n~~~~~~~~  219 (517)
                      .+.+.-|-|+|..-+..+...-..-       ..++..=.|.               .+-..+.|.++ ++.+...|++-
T Consensus        95 ~~~i~~QSpDIa~GVd~~~~~~~~GAGDQGiMFGYA~~ET~~---------------lMPlpi~lAh~L~~~l~~~Rk~g  159 (391)
T PTZ00104         95 LVAIEQQSPDIAQGVGVDFGGEEIGAGDQGMMFGYATDETET---------------LMPLTHELARGLAMRLSELRRNG  159 (391)
T ss_pred             EEEEECCCHHHHHHHCCCCCHHHCCCCCCCEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             898844581665311358641102777541577676279611---------------37739999999999999999659


Q ss_pred             CCCCCCCCHHCCCHHCCCCEEEEECCCCC------C--CCHH--HHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCC
Q ss_conf             67766430000102217833530024786------3--2426--773320022568999999999998974486617878
Q gi|254780623|r  220 VKDQGFRVPKIDWNRTERDVITMEWIDGV------K--ISDT--EKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLH  289 (517)
Q Consensus       220 ~~~~~v~vP~vy~~~st~~VLvmE~i~G~------~--i~d~--~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFHaDPH  289 (517)
                            .+|-.-+|  ++.=.|+||-++-      |  ++.+  ..-+..+++.+++-+.+.+-..+.++...++..|- 
T Consensus       160 ------~l~~LrPD--~KsQVTv~Y~~~~~~~~~~P~ri~tVViStQH~~~v~~~~lr~~i~e~vi~~v~~~~~l~~~t-  230 (391)
T PTZ00104        160 ------ILPWARPD--AKTQVTVEYEYDTRGGKLTPKRVHTILISTQHDEGVTNETIREDLMEKVIKAVIPAKLLDENT-  230 (391)
T ss_pred             ------CCCCCCCC--CCEEEEEEEECCCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCC-
T ss_conf             ------98654788--723699996168766676406898899960478867999999999998998753031289785-


Q ss_pred             CCEEEEECCCCEEE----EECCHHEE
Q ss_conf             62289802895357----43403121
Q gi|254780623|r  290 PGNLFVDSKGYIVA----VDMGITGR  311 (517)
Q Consensus       290 pGNi~v~~dg~i~~----lDfG~vg~  311 (517)
                        +++|.|.|+.+.    -|.|++||
T Consensus       231 --~~~INPtG~FviGGP~~D~GLTGR  254 (391)
T PTZ00104        231 --KYHLNPSGRFVIGGPHGDAGLTGR  254 (391)
T ss_pred             --EEEECCCCCEEECCCCCCCCCCCC
T ss_conf             --799889999642898645577777


No 482
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases; InterPro: IPR004507   This family contains flavoproteins, which are aromatic acid decarboxylases. An example is the Saccharomyces cerevisiae gene, PAD1 that encodes phenylacrylic acid decarboxylase. Mutations of this gene are viable and confer resistance to cinnamic acid. ; GO: 0016831 carboxy-lyase activity.
Probab=69.61  E-value=3.1  Score=21.01  Aligned_cols=56  Identities=27%  Similarity=0.274  Sum_probs=40.1

Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHH-------HHHHH-H-HHHHHHHH
Q ss_conf             9999710045988999999988748878998999998754047889999-------99867-6-66778888
Q gi|254780623|r   71 GQFLATRPDLIGKKLSEDLALLQDKMDFFPTNTARLSVASALKAPIEEL-------YCEFD-D-PIAAASIA  133 (517)
Q Consensus        71 GQ~lstR~Dllp~~~~~eL~~Lqd~vpp~~~~~v~~~ie~elg~~~~~~-------F~~fd-e-PlasASia  133 (517)
                      ||+++.|       +.+.|+.+=-+|--+=...++.++..|+|-.+.++       |+.=| - ||+|||--
T Consensus        11 GvI~G~R-------LL~~Lk~~GvE~~LviS~~A~~tiK~Etd~~~~~v~~LAT~~Y~~~D~~a~i~SGSf~   75 (181)
T TIGR00421        11 GVIYGIR-------LLEVLKELGVEVHLVISKWAKKTIKYETDYDPGEVEELATKYYDEDDFAAPIASGSFK   75 (181)
T ss_pred             HHHHHHH-------HHHHHHHCCCEEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCC
T ss_conf             8999999-------9999986793687863558999998853899889999967532611211000157867


No 483
>KOG0905 consensus
Probab=68.24  E-value=8.1  Score=17.76  Aligned_cols=24  Identities=25%  Similarity=0.505  Sum_probs=21.5

Q ss_pred             CCCCCCCEEEEECCCCEEEEECCH
Q ss_conf             178786228980289535743403
Q gi|254780623|r  285 HADLHPGNLFVDSKGYIVAVDMGI  308 (517)
Q Consensus       285 HaDPHpGNi~v~~dg~i~~lDfG~  308 (517)
                      -||=|--|||.+..|..--||||-
T Consensus      1200 IcDRHNDNIMl~~sGHmFHIDFGK 1223 (1639)
T KOG0905        1200 ICDRHNDNIMLTKSGHMFHIDFGK 1223 (1639)
T ss_pred             CCCCCCCCEEEECCCCEEEEEHHH
T ss_conf             022567725783057379974333


No 484
>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]
Probab=67.84  E-value=8.2  Score=17.70  Aligned_cols=15  Identities=20%  Similarity=0.253  Sum_probs=5.7

Q ss_pred             CCHHHHHHHHHHHHC
Q ss_conf             872789999998412
Q gi|254780623|r  330 RDYQRVADVHFEAGY  344 (517)
Q Consensus       330 ~D~~~~~~~l~~lg~  344 (517)
                      .|++.++..+...|.
T Consensus       447 ~~~~~lv~~i~q~g~  461 (637)
T COG4248         447 MDYDHLVAQIQQRGG  461 (637)
T ss_pred             CCHHHHHHHHHHHHH
T ss_conf             011699999986302


No 485
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=67.56  E-value=7.8  Score=17.86  Aligned_cols=36  Identities=22%  Similarity=0.191  Sum_probs=24.4

Q ss_pred             CEEEEECCCCEEEEECCH--------------HEECCHHHHHHHHHHHHHH
Q ss_conf             228980289535743403--------------1216989999999766999
Q gi|254780623|r  291 GNLFVDSKGYIVAVDMGI--------------TGRLSKRERRFLAEILYGF  327 (517)
Q Consensus       291 GNi~v~~dg~i~~lDfG~--------------vg~l~~~~r~~l~~l~~a~  327 (517)
                      .|-- ..+|.++++|+|.              +|..++..++.+..++.|.
T Consensus        75 ~~~~-i~~gdlvLiD~G~~Y~gy~SDiTRT~~~G~~s~~~~~~Y~~Vl~a~  124 (224)
T cd01085          75 SNRK-ISPDGLYLIDSGGQYLDGTTDITRTVHLGEPTAEQKRDYTLVLKGH  124 (224)
T ss_pred             CCCC-CCCCCEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             6733-3689836772792251644665534206999999999999999999


No 486
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=66.63  E-value=8.5  Score=17.61  Aligned_cols=91  Identities=18%  Similarity=0.297  Sum_probs=43.8

Q ss_pred             HHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH-HHHCCEECCCC--CCCEEEE-ECCCCEEEEECCH
Q ss_conf             221783353002478632426773320022568999999999998-97448661787--8622898-0289535743403
Q gi|254780623|r  233 NRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH-TLRDGFFHADL--HPGNLFV-DSKGYIVAVDMGI  308 (517)
Q Consensus       233 ~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q-i~~~GfFHaDP--HpGNi~v-~~dg~i~~lDfG~  308 (517)
                      +++.+.=+.-+|++|.+++|.+.++-.-.---.+-..+ .+.+.| .-..|...++.  -.||+.. .|-|.+-=+|+|.
T Consensus        64 ~~l~~~gi~~~fv~G~RVTd~~tl~vv~~~~G~vn~~i-~a~ls~g~~~~g~~g~~~~~~~g~~i~a~p~g~~dgiD~G~  142 (280)
T cd04237          64 QRLAERGLEPRYHRGLRITDAAALECVKEAAGAVRLEI-EALLSMGLPNSPMAGARIRVVSGNFVTARPLGVVDGVDFGH  142 (280)
T ss_pred             HHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCC
T ss_conf             99998699746217877799999999999999999999-99997053435653557234058658988865314744467


Q ss_pred             HEECCHHHHHHHHHHH
Q ss_conf             1216989999999766
Q gi|254780623|r  309 TGRLSKRERRFLAEIL  324 (517)
Q Consensus       309 vg~l~~~~r~~l~~l~  324 (517)
                      ||++..-....+..++
T Consensus       143 vG~v~~Vn~~~l~~ll  158 (280)
T cd04237         143 TGEVRRIDADAIRRQL  158 (280)
T ss_pred             CCCCCEEEHHHHHHHH
T ss_conf             9830266499998687


No 487
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=66.60  E-value=8.7  Score=17.52  Aligned_cols=32  Identities=25%  Similarity=0.447  Sum_probs=27.2

Q ss_pred             HHHCCEECCCCCCCEEEEECCCCEEEEECCHH
Q ss_conf             97448661787862289802895357434031
Q gi|254780623|r  278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGIT  309 (517)
Q Consensus       278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~v  309 (517)
                      ++.+=|--+|-|-||.||-+.|-|--|||-.+
T Consensus      1142 LLNYIFsIGDRHk~NVlI~~nGAllHIDfrfi 1173 (1374)
T PTZ00303       1142 LLNYIFSIGDRHKGNVLIGTNGALLHIDFRFI 1173 (1374)
T ss_pred             HHHHHHHCCCCCCCCEEECCCCCEEEEEEEEE
T ss_conf             99988741542458568747761799888888


No 488
>KOG0986 consensus
Probab=65.07  E-value=9.2  Score=17.31  Aligned_cols=104  Identities=18%  Similarity=0.258  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCC-HHHHHHHHCCCHHHH--HHHHHHHHHHHHHH
Q ss_conf             999988987202446776643000010221783--3530024786324-267733200225689--99999999998974
Q gi|254780623|r  206 RLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKIS-DTEKLRACGHDLERL--SVTLVQSFLLHTLR  280 (517)
Q Consensus       206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~-d~~~l~~~~~d~~~l--a~~l~~~~~~qi~~  280 (517)
                      .+|..++++...-      ++|--.|. |-|+.  +|||.-+.|--+. .+-.+-..|.+-++.  =..=+-+-++.+-.
T Consensus       233 LnEk~iL~kV~s~------FiVslaYA-feTkd~LClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~  305 (591)
T KOG0986         233 LNEKQILEKVSSP------FIVSLAYA-FETKDALCLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHR  305 (591)
T ss_pred             HHHHHHHHHHCCC------CEEEEEEE-ECCCCCEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             6799999874567------37998661-1377733898982038731477111589888657889999999864798874


Q ss_pred             CCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHH
Q ss_conf             486617878622898028953574340312169899
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRE  316 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~  316 (517)
                      .+..--|.-|-||++++.|.+-+=|.|....+++..
T Consensus       306 ~~iVYRDLKPeNILLDd~GhvRISDLGLAvei~~g~  341 (591)
T KOG0986         306 RRIVYRDLKPENILLDDHGHVRISDLGLAVEIPEGK  341 (591)
T ss_pred             CCEEECCCCHHHEEECCCCCEEEECCCEEEECCCCC
T ss_conf             553430378656545468976760351477647897


No 489
>PRK09566 nirA ferredoxin-nitrite reductase; Reviewed
Probab=65.02  E-value=1.3  Score=23.80  Aligned_cols=22  Identities=32%  Similarity=0.351  Sum_probs=12.4

Q ss_pred             HHHHCCCC-----CCHHHHHHHHHHHH
Q ss_conf             99710045-----98899999998874
Q gi|254780623|r   73 FLATRPDL-----IGKKLSEDLALLQD   94 (517)
Q Consensus        73 ~lstR~Dl-----lp~~~~~eL~~Lqd   94 (517)
                      -+.||.++     ..++..+-++.|++
T Consensus        99 ~iTTRQniQlh~I~~~d~~~i~~~L~~  125 (513)
T PRK09566         99 DITTRQNLQLRGILLEDLPEILNRLKA  125 (513)
T ss_pred             EEECCCCHHHCCCCHHHHHHHHHHHHH
T ss_conf             997371121158777889999999998


No 490
>KOG4720 consensus
Probab=64.99  E-value=9.3  Score=17.30  Aligned_cols=114  Identities=18%  Similarity=0.181  Sum_probs=67.5

Q ss_pred             EECCCCCCCEEEEE-CCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-----CCCCHHHHHH
Q ss_conf             66178786228980-28953574340312169899999997669997187278999999841266-----7789368999
Q gi|254780623|r  283 FFHADLHPGNLFVD-SKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVP-----RHHNRFSFAQ  356 (517)
Q Consensus       283 fFHaDPHpGNi~v~-~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~-----~~~d~~~~~~  356 (517)
                      |-|-|.--|||+++ ..|.+-||||--.|                 .+-....+..-+-+++-+.     ...+++.=.+
T Consensus       250 FcHNDLL~~Niiy~~~~~~v~fIDYEYa~-----------------yNY~afDIgNHFnE~aGv~evDYSlyp~rE~Q~q  312 (391)
T KOG4720         250 FCHNDLLCGNIIYDSEKGSVEFIDYEYAG-----------------YNYQAFDIGNHFNEYAGVEEVDYSLYPTREEQLQ  312 (391)
T ss_pred             EEECCHHHCCEEECCCCCCEEEEEECCCC-----------------CCHHHEEHHHHHHHHCCCCCCCHHCCCCHHHHHH
T ss_conf             86044221235330566837888611466-----------------6511100566678653887664101878889999


Q ss_pred             HHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             9998521001334333113568999997545279712888999999999988499876889888999
Q gi|254780623|r  357 AIRAIGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVARMLNPEFNMWVS  423 (517)
Q Consensus       357 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~~~ll~r~l~~lEG~~~~LdP~~d~~~~  423 (517)
                      -++..++.+.+...++-.+..++-++..-+      +-+.+.--+=+++..+-.    --|||+...
T Consensus       313 wl~~YLq~~kg~evs~~eVe~lfvqvn~Fa------lAsHlfWavWAllQA~~S----tIdFdylgY  369 (391)
T KOG4720         313 WLRDYLQAYKGKEVSDTEVETLFVQVNQFA------LASHLFWAVWALLQAQNS----TIDFDYLGY  369 (391)
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHCC----CCCCCCHHH
T ss_conf             999997540675578899999999988898------887899999999986407----502332026


No 491
>pfam05542 DUF760 Protein of unknown function (DUF760). This family contains several uncharacterized plant proteins.
Probab=64.84  E-value=6.1  Score=18.70  Aligned_cols=27  Identities=30%  Similarity=0.477  Sum_probs=23.5

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHCC
Q ss_conf             999997100459889999999887488
Q gi|254780623|r   70 MGQFLATRPDLIGKKLSEDLALLQDKM   96 (517)
Q Consensus        70 lGQ~lstR~Dllp~~~~~eL~~Lqd~v   96 (517)
                      |-|+|-+.|.|||.+.-++|++||++-
T Consensus         9 Ls~iL~~~PhL~paAv~qqLe~L~~dr   35 (328)
T pfam05542         9 LSQILRTHPHLLPAAVDQQLEQLQTDR   35 (328)
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             999997287433599999999988888


No 492
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=62.34  E-value=8.8  Score=17.46  Aligned_cols=78  Identities=14%  Similarity=0.206  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHCCCCHHHHHHHHH--HHH
Q ss_conf             078999999960428999999997100459889999999887488--7899899999875404788999999867--666
Q gi|254780623|r   52 RSDRLARAMNRLGPSYVKMGQFLATRPDLIGKKLSEDLALLQDKM--DFFPTNTARLSVASALKAPIEELYCEFD--DPI  127 (517)
Q Consensus        52 ~~~rlr~~le~LGptfiKlGQ~lstR~Dllp~~~~~eL~~Lqd~v--pp~~~~~v~~~ie~elg~~~~~~F~~fd--ePl  127 (517)
                      .|+-|..+|+||--.|-|.         .=.++|.+||..+..+-  .|-|.-.++. +++++|.  -++|-..|  .|-
T Consensus        23 vpe~l~~~l~el~~~~~~~---------~~d~~F~~e~~~~~~~y~GRPTPL~~A~~-Ls~~lgg--a~IylKrEdln~t   90 (403)
T PRK13028         23 VPPELKPALDEIEAAYEEI---------KKDPDFINELRYLLKHYVGRPTPLYHAKR-LSEKLGG--AQIYLKREDLNHT   90 (403)
T ss_pred             CCHHHHHHHHHHHHHHHHH---------HCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHCCC--CEEEEEECCCCCC
T ss_conf             8598999999999999999---------66999999999999864899866577777-7865698--6799985057877


Q ss_pred             HH----HHHHHHHHHHEE
Q ss_conf             77----888865555021
Q gi|254780623|r  128 AA----ASIAQVHPAVVH  141 (517)
Q Consensus       128 as----ASiaQVh~A~l~  141 (517)
                      +|    ..|+|++.|+-.
T Consensus        91 GSHKiNnai~QallAk~~  108 (403)
T PRK13028         91 GAHKINHCLGEALLAKRM  108 (403)
T ss_pred             CCCCHHHHHHHHHHHHHC
T ss_conf             775233089999999983


No 493
>PRK12459 S-adenosylmethionine synthetase; Provisional
Probab=62.14  E-value=10  Score=16.93  Aligned_cols=80  Identities=21%  Similarity=0.391  Sum_probs=52.0

Q ss_pred             CHHCCCHHCCCCEEEEECCCCCCC--CHH--HHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEE
Q ss_conf             000010221783353002478632--426--7733200225689999999999989744866178786228980289535
Q gi|254780623|r  227 VPKIDWNRTERDVITMEWIDGVKI--SDT--EKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIV  302 (517)
Q Consensus       227 vP~vy~~~st~~VLvmE~i~G~~i--~d~--~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~  302 (517)
                      +|-.-+|  ++.=.|+||-+|.|+  +.+  ..-+..+.+.+.+-+.+.+...+.++...+..-   .=+++|.|.|+.+
T Consensus       158 ~~~LrPD--~KsQVTv~Y~~~kP~ri~tVViS~QH~~~v~~~~l~~~I~~~Vi~~v~~~~~~~~---~t~~~INPtGrFv  232 (383)
T PRK12459        158 LPGLLPD--GKTQVTVEYEDGRPVRVDTIVVSAQHDEDVDLATLRRDVIENVIKPVFEDFWLDD---ETRILVNPTGRFV  232 (383)
T ss_pred             CCCCCCC--CCEEEEEEEECCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCHHHCCCC---CCEEEECCCCCEE
T ss_conf             8754788--7448999861698648989999406787478999999999999987363226898---8479988989967


Q ss_pred             E----EECCHHEE
Q ss_conf             7----43403121
Q gi|254780623|r  303 A----VDMGITGR  311 (517)
Q Consensus       303 ~----lDfG~vg~  311 (517)
                      .    -|.|++||
T Consensus       233 iGGP~~D~GLTGR  245 (383)
T PRK12459        233 VGGPAADTGLTGR  245 (383)
T ss_pred             ECCCCCCCCCCCC
T ss_conf             6887645577777


No 494
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=62.08  E-value=8.9  Score=17.44  Aligned_cols=14  Identities=14%  Similarity=0.116  Sum_probs=4.7

Q ss_pred             CHHHHHHHHHHHHH
Q ss_conf             98999999976699
Q gi|254780623|r  313 SKRERRFLAEILYG  326 (517)
Q Consensus       313 ~~~~r~~l~~l~~a  326 (517)
                      +...-..+..+..-
T Consensus        81 n~~ll~~~~~~~~~   94 (290)
T COG1561          81 NEDLLKQLVTLLKE   94 (290)
T ss_pred             CHHHHHHHHHHHHH
T ss_conf             89999999999999


No 495
>COG4579 Isocitrate dehydrogenase kinase/phosphatase [Signal transduction mechanisms]
Probab=61.97  E-value=3.7  Score=20.42  Aligned_cols=16  Identities=19%  Similarity=0.268  Sum_probs=5.6

Q ss_pred             HHHHHHHCCCCCCHHH
Q ss_conf             9999971004598899
Q gi|254780623|r   70 MGQFLATRPDLIGKKL   85 (517)
Q Consensus        70 lGQ~lstR~Dllp~~~   85 (517)
                      +-|.+..|-.+..+-.
T Consensus        43 ~Qqa~~~RI~lYd~~V   58 (578)
T COG4579          43 VQQAMKNRIHLYDHHV   58 (578)
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9999997778888889


No 496
>pfam11517 Nab2 Nuclear abundant poly(A) RNA-bind protein 2 (Nab2). Nab2 is a yeast heterogeneous nuclear ribonucleoprotein that modulates poly(A) tail length and mRNA. This is the N terminal domain of the protein which mediates interactions with the C-terminal globular domain, Myosin-like protein 1 and the mRNA export factor, Gfd1.The N-terminal domain of Nab2 shows a structure of a helical fold. The N terminal domain of Nab2 is thought to mediate protein protein interactions that facilitate the nuclear export of mRNA. An essential hydrophobic Phe73 patch on the N terminal domain is thought to be a important component of the interface between Nab2 and Mlp1.
Probab=61.76  E-value=9.2  Score=17.34  Aligned_cols=42  Identities=17%  Similarity=0.227  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHC-----CCCHHHHHHHHH
Q ss_conf             899999998874887899899999875404-----788999999867
Q gi|254780623|r   83 KKLSEDLALLQDKMDFFPTNTARLSVASAL-----KAPIEELYCEFD  124 (517)
Q Consensus        83 ~~~~~eL~~Lqd~vpp~~~~~v~~~ie~el-----g~~~~~~F~~fd  124 (517)
                      +.+++||..|.|.|++-.+..+-++--..+     |.+++.+++.+.
T Consensus        48 esvvqELtsLFDsVs~eal~dVVqtaf~ale~Lq~Gd~~e~i~~Kl~   94 (107)
T pfam11517        48 ESIVQELTSLFDSVSTQALADVVQTAFFALELLQQGDDLETVYSKLR   94 (107)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             78999999996048999999999999999999975780999999999


No 497
>KOG2464 consensus
Probab=60.70  E-value=4.7  Score=19.60  Aligned_cols=20  Identities=45%  Similarity=0.815  Sum_probs=18.2

Q ss_pred             HCCEECCCCCCCEEEEECCC
Q ss_conf             44866178786228980289
Q gi|254780623|r  280 RDGFFHADLHPGNLFVDSKG  299 (517)
Q Consensus       280 ~~GfFHaDPHpGNi~v~~dg  299 (517)
                      ..||=|=|.|+|||++.+.+
T Consensus       156 ~~~~~hrdl~~gnili~k~~  175 (246)
T KOG2464         156 SLGFEHRDLHLGNILIKKTG  175 (246)
T ss_pred             HCCCEEECCCCCCEEEECCC
T ss_conf             23404640214727984156


No 498
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit; InterPro: IPR005892   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation.   Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits this transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L. lactis functionally complements an Escherichia coli proU mutant. The complementing locus is similar to a opuA locus in Bacillus subtlis. This clarifies the differences in nomenclature.; GO: 0005524 ATP binding, 0015171 amino acid transmembrane transporter activity, 0006865 amino acid transport, 0016020 membrane.
Probab=60.02  E-value=9.2  Score=17.32  Aligned_cols=41  Identities=24%  Similarity=0.320  Sum_probs=19.1

Q ss_pred             HHHHHHHHCCCC-------------CCHHHHHHHHHHHHCCC------CCCHHHHHHHHH
Q ss_conf             999999710045-------------98899999998874887------899899999875
Q gi|254780623|r   69 KMGQFLATRPDL-------------IGKKLSEDLALLQDKMD------FFPTNTARLSVA  109 (517)
Q Consensus        69 KlGQ~lstR~Dl-------------lp~~~~~eL~~Lqd~vp------p~~~~~v~~~ie  109 (517)
                      =+..-|+.-||+             .-.++-+||.+||+++.      .++.+|+-++-.
T Consensus       140 Gl~RALa~~PdilLMDEaFsALDPliR~~lQdEl~kLq~~~~kTIvFitHDlDEA~rigD  199 (372)
T TIGR01186       140 GLARALAAEPDILLMDEAFSALDPLIRDSLQDELKKLQATLQKTIVFITHDLDEALRIGD  199 (372)
T ss_pred             HHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHH
T ss_conf             999987438780540476433571001678899999998609808999417678876751


No 499
>COG3570 StrB Streptomycin 6-kinase [Defense mechanisms]
Probab=58.02  E-value=12  Score=16.43  Aligned_cols=53  Identities=23%  Similarity=0.338  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHCCEECCCCCCCEEEEECC-CCEEEEECCHHEECCHHHHHHHH
Q ss_conf             999999998974486617878622898028-95357434031216989999999
Q gi|254780623|r  269 TLVQSFLLHTLRDGFFHADLHPGNLFVDSK-GYIVAVDMGITGRLSKRERRFLA  321 (517)
Q Consensus       269 ~l~~~~~~qi~~~GfFHaDPHpGNi~v~~d-g~i~~lDfG~vg~l~~~~r~~l~  321 (517)
                      +..+..+.+-=+-+-.|+|.|-|||+=.+. |=+++=--|.+|.=.=+.-..|.
T Consensus       149 ~~A~~LL~~p~di~pLHGDlHH~Nild~~~rGWlvIDPkgl~Gdrg~D~ANlf~  202 (274)
T COG3570         149 RAAQTLLDTPRDIRPLHGDLHHGNILDGDRRGWLVIDPKGLIGDRGFDYANLFC  202 (274)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHC
T ss_conf             999998648664656766444543146886751787654445865522676524


No 500
>pfam07387 Seadorna_VP7 Seadornavirus VP7. This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length. The function of this family is unknown. However, it appears to be distantly related to protein kinases.
Probab=57.80  E-value=6.5  Score=18.47  Aligned_cols=27  Identities=41%  Similarity=0.673  Sum_probs=0.0

Q ss_pred             CEECCCCCCCEEEEECCCCEEEEECCH
Q ss_conf             866178786228980289535743403
Q gi|254780623|r  282 GFFHADLHPGNLFVDSKGYIVAVDMGI  308 (517)
Q Consensus       282 GfFHaDPHpGNi~v~~dg~i~~lDfG~  308 (517)
                      |..|||-.|-|||-++.|-+-+.|-+.
T Consensus       163 ~~lHGDcnp~niMcDk~G~lKlVDP~~  189 (308)
T pfam07387       163 GTLHGDCNPQNLMCDKNGYLKLVDPVC  189 (308)
T ss_pred             CEECCCCCHHHEEECCCCCEEECCHHH
T ss_conf             713367787775346889778607466


Done!