Query gi|254780623|ref|YP_003065036.1| 2-polyprenylphenol 6-hydroxylase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 517 No_of_seqs 191 out of 2356 Neff 7.3 Searched_HMMs 39220 Date Sun May 29 22:15:31 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780623.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PRK04750 ubiB putative ubiquin 100.0 0 0 1014.5 52.8 508 1-515 1-513 (540) 2 TIGR01982 UbiB 2-polyprenylphe 100.0 0 0 1029.7 33.7 437 4-441 1-451 (452) 3 COG0661 AarF Predicted unusual 100.0 0 0 892.5 47.1 463 2-468 5-470 (517) 4 KOG1235 consensus 100.0 0 0 657.9 28.1 366 53-429 94-485 (538) 5 KOG1236 consensus 100.0 0 0 527.8 25.9 376 53-429 121-556 (565) 6 KOG1234 consensus 100.0 3.5E-40 8.4E-45 330.6 24.3 336 79-422 8-352 (363) 7 pfam03109 ABC1 ABC1 family. Th 100.0 4.3E-30 1.1E-34 252.4 9.4 116 110-231 1-117 (117) 8 pfam01163 RIO1 RIO1 family. Th 99.2 2.7E-10 6.9E-15 99.0 11.6 178 135-347 2-181 (186) 9 cd05144 RIO2_C RIO kinase fami 99.2 5.1E-11 1.3E-15 104.6 6.8 161 120-313 16-176 (198) 10 cd05119 RIO RIO kinase family, 99.2 1.6E-10 4.1E-15 100.7 8.7 156 126-313 4-165 (187) 11 smart00090 RIO RIO-like kinase 99.1 5.2E-10 1.3E-14 96.7 10.4 198 121-356 30-233 (237) 12 cd05145 RIO1_like RIO kinase f 99.1 6.7E-10 1.7E-14 95.9 9.5 161 126-314 4-169 (190) 13 cd05038 PTKc_Jak_rpt2 Catalyti 99.1 5.8E-09 1.5E-13 88.6 13.2 142 125-314 10-161 (279) 14 COG1718 RIO1 Serine/threonine 99.1 4.3E-09 1.1E-13 89.6 12.5 196 126-359 55-253 (268) 15 cd05123 STKc_AGC STKc_AGC: Ser 99.0 3.4E-09 8.8E-14 90.4 10.7 141 127-316 1-147 (250) 16 cd06608 STKc_myosinIII_like Se 99.0 8.6E-10 2.2E-14 95.0 5.7 145 125-315 12-166 (275) 17 smart00220 S_TKc Serine/Threon 99.0 5.8E-09 1.5E-13 88.7 9.8 134 132-316 2-141 (244) 18 cd05612 STKc_PRKX_like STKc_PR 99.0 1.9E-09 4.9E-14 92.3 7.3 138 125-314 7-153 (291) 19 cd00180 S_TKc Serine/Threonine 99.0 9.3E-10 2.4E-14 94.8 5.6 141 125-315 6-152 (256) 20 COG0478 RIO-like serine/threon 99.0 8.7E-09 2.2E-13 87.2 10.5 185 122-345 94-278 (304) 21 cd05122 PKc_STE Protein Kinase 99.0 1.2E-09 3.2E-14 93.8 5.9 139 125-315 6-150 (253) 22 cd05580 STKc_PKA STKc_PKA: Ser 99.0 4.3E-09 1.1E-13 89.7 8.7 139 125-315 7-154 (290) 23 cd05147 RIO1_euk RIO kinase fa 99.0 4.2E-09 1.1E-13 89.7 8.6 160 126-313 4-168 (190) 24 cd05115 PTKc_Zap-70 Catalytic 98.9 1.2E-08 3E-13 86.3 10.4 141 127-315 3-148 (257) 25 cd05075 PTKc_Axl Catalytic Dom 98.9 3E-09 7.8E-14 90.8 7.4 153 123-314 3-164 (272) 26 PRK13184 pknD serine/threonine 98.9 1.8E-09 4.6E-14 92.6 5.7 138 125-309 8-160 (933) 27 cd05063 PTKc_EphR_A2 Catalytic 98.9 9.2E-09 2.4E-13 87.1 9.0 143 124-314 10-159 (268) 28 cd05112 PTKc_Itk Catalytic Dom 98.9 4E-09 1E-13 89.9 7.1 136 125-312 10-150 (256) 29 cd06639 STKc_myosinIIIB Serine 98.9 3.1E-10 8E-15 98.4 1.4 154 110-315 15-181 (291) 30 cd05581 STKc_PDK1 STKc_PDK1: S 98.9 8.4E-09 2.1E-13 87.4 8.6 143 125-318 7-158 (279) 31 cd05120 APH_ChoK_like Aminogly 98.9 1.1E-08 2.7E-13 86.5 9.0 141 125-319 4-146 (155) 32 pfam00069 Pkinase Protein kina 98.9 2.7E-09 6.8E-14 91.2 5.9 141 125-314 5-150 (260) 33 cd05041 PTKc_Fes_like Catalyti 98.9 5.8E-09 1.5E-13 88.6 7.6 137 125-311 1-142 (251) 34 cd06620 PKc_MAPKK_Byr1_like Pr 98.9 6.3E-09 1.6E-13 88.3 7.7 144 121-314 5-156 (284) 35 cd06614 STKc_PAK Serine/threon 98.9 6.8E-09 1.7E-13 88.1 7.7 161 104-315 4-170 (287) 36 cd05113 PTKc_Btk_Bmx Catalytic 98.9 1.3E-08 3.4E-13 85.8 9.1 142 121-314 4-152 (256) 37 cd05114 PTKc_Tec_Rlk Catalytic 98.9 3.6E-09 9.2E-14 90.2 6.2 141 121-313 4-151 (256) 38 PRK09605 O-sialoglycoprotein e 98.9 1.7E-08 4.2E-13 85.1 9.5 91 205-310 385-475 (536) 39 cd05059 PTKc_Tec_like Catalyti 98.9 4.2E-09 1.1E-13 89.7 6.4 140 121-312 4-150 (256) 40 cd06623 PKc_MAPKK_plant_like P 98.9 2.2E-09 5.5E-14 92.0 4.9 141 122-314 2-152 (264) 41 cd06605 PKc_MAPKK Protein kina 98.9 2.1E-08 5.2E-13 84.4 9.6 142 125-315 7-154 (265) 42 cd05146 RIO3_euk RIO kinase fa 98.9 1.4E-08 3.5E-13 85.7 8.7 185 126-339 4-194 (197) 43 cd06659 STKc_PAK6 Serine/threo 98.9 1.2E-08 3.1E-13 86.2 8.4 161 100-315 5-170 (297) 44 cd05095 PTKc_DDR2 Catalytic Do 98.9 2.3E-08 5.9E-13 84.0 9.8 145 122-314 8-182 (296) 45 cd07841 STKc_CDK7 The catalyti 98.9 7.1E-09 1.8E-13 87.9 7.0 140 125-314 6-154 (298) 46 cd05079 PTKc_Jak1_rpt2 Catalyt 98.9 2.2E-08 5.5E-13 84.2 9.3 147 125-315 10-162 (284) 47 cd05085 PTKc_Fer Catalytic Dom 98.9 1.3E-08 3.3E-13 85.9 8.0 138 127-314 3-145 (250) 48 cd06658 STKc_PAK5 Serine/threo 98.9 1.5E-08 3.8E-13 85.4 8.3 163 100-315 3-171 (292) 49 cd06628 STKc_MAPKKK_Byr2_like 98.9 3.7E-09 9.3E-14 90.2 5.1 147 126-317 7-161 (267) 50 cd05067 PTKc_Lck_Blk Catalytic 98.9 1.6E-08 4E-13 85.2 8.4 144 120-315 5-155 (260) 51 smart00221 STYKc Protein kinas 98.9 1.3E-08 3.3E-13 85.9 7.9 143 125-316 5-152 (225) 52 cd05096 PTKc_DDR1 Catalytic Do 98.8 2.3E-08 5.9E-13 84.0 9.1 144 122-312 8-188 (304) 53 cd05065 PTKc_EphR_B Catalytic 98.8 1.7E-08 4.3E-13 85.0 8.3 147 121-315 4-159 (269) 54 cd05074 PTKc_Tyro3 Catalytic D 98.8 1.4E-08 3.5E-13 85.7 7.8 145 124-314 4-165 (273) 55 cd06612 STKc_MST1_2 Serine/thr 98.8 4E-08 1E-12 82.1 10.2 139 125-315 9-152 (256) 56 cd06606 STKc_MAPKKK Serine/thr 98.8 1.3E-08 3.4E-13 85.8 7.7 142 125-315 6-153 (259) 57 cd05033 PTKc_EphR Catalytic Do 98.8 2.9E-08 7.4E-13 83.2 9.3 146 122-314 7-158 (266) 58 cd06635 STKc_TAO1 Serine/threo 98.8 8.2E-08 2.1E-12 79.7 11.4 152 115-315 22-178 (317) 59 cd06650 PKc_MEK1 MEK1 (MAPKK1 98.8 4.5E-09 1.1E-13 89.5 4.9 142 122-314 6-156 (333) 60 cd05049 PTKc_Trk Catalytic Dom 98.8 2E-08 5.1E-13 84.5 8.1 143 123-313 9-173 (280) 61 cd05610 STKc_MASTL STKc_MASTL: 98.8 6E-09 1.5E-13 88.5 5.5 141 122-311 5-153 (669) 62 cd00192 PTKc Catalytic Domain 98.8 7.4E-09 1.9E-13 87.8 5.8 144 125-315 1-157 (261) 63 cd05148 PTKc_Srm_Brk Catalytic 98.8 2.5E-08 6.4E-13 83.7 8.6 144 120-314 5-156 (261) 64 cd06657 STKc_PAK4 Serine/threo 98.8 2.9E-08 7.5E-13 83.2 8.9 147 116-315 18-169 (292) 65 cd06607 STKc_TAO Serine/threon 98.8 1.3E-08 3.2E-13 86.0 6.8 151 115-314 12-167 (307) 66 cd05097 PTKc_DDR_like Catalyti 98.8 8.7E-08 2.2E-12 79.5 11.1 143 122-313 8-180 (295) 67 cd06643 STKc_SLK Serine/threon 98.8 2.2E-08 5.7E-13 84.1 8.0 148 116-314 3-155 (282) 68 cd06917 STKc_NAK1_like Serine/ 98.8 1.6E-08 4.1E-13 85.2 7.3 143 125-315 7-154 (277) 69 cd06649 PKc_MEK2 MEK2 (MAPKK2 98.8 6.4E-09 1.6E-13 88.3 5.2 143 122-315 6-157 (331) 70 cd06615 PKc_MEK MEK1/2 (MAPK k 98.8 9.8E-09 2.5E-13 86.9 6.0 136 125-314 7-152 (308) 71 cd06654 STKc_PAK1 Serine/threo 98.8 2.1E-08 5.2E-13 84.4 7.6 139 125-315 26-169 (296) 72 cd06638 STKc_myosinIIIA Serine 98.8 1E-08 2.6E-13 86.7 6.0 140 125-314 24-176 (286) 73 cd05625 STKc_LATS1 STKc_LATS1: 98.8 3.7E-09 9.5E-14 90.1 3.7 136 125-312 7-151 (382) 74 pfam07714 Pkinase_Tyr Protein 98.8 1.6E-08 4.1E-13 85.2 7.0 145 124-315 4-155 (258) 75 cd06627 STKc_Cdc7_like Serine/ 98.8 2.9E-09 7.5E-14 90.9 3.2 137 125-314 6-151 (254) 76 cd06621 PKc_MAPKK_Pek1_like Pr 98.8 1E-08 2.6E-13 86.7 6.0 143 125-314 7-157 (287) 77 cd05064 PTKc_EphR_A10 Catalyti 98.8 2.6E-08 6.5E-13 83.6 7.9 143 121-310 5-155 (266) 78 cd06648 STKc_PAK_II Serine/thr 98.8 2.9E-08 7.4E-13 83.2 8.2 147 116-315 17-168 (285) 79 cd05574 STKc_phototropin_like 98.8 1.2E-08 3.1E-13 86.1 6.2 141 125-315 7-156 (315) 80 cd05579 STKc_MAST_like STKc_MA 98.8 1.1E-08 2.8E-13 86.5 6.0 132 127-310 1-141 (265) 81 cd05032 PTKc_InsR_like Catalyt 98.8 7.7E-08 2E-12 79.9 10.1 146 121-315 6-172 (277) 82 cd05572 STKc_cGK_PKG STKc_cGK_ 98.8 1.1E-08 2.7E-13 86.6 5.6 137 127-315 1-146 (262) 83 cd06619 PKc_MKK5 Protein kinas 98.8 1.8E-08 4.5E-13 84.9 6.7 140 124-314 6-147 (279) 84 cd07846 STKc_CDKL2_3 The catal 98.8 1.3E-08 3.4E-13 85.8 6.0 142 125-313 7-151 (286) 85 cd06656 STKc_PAK3 Serine/threo 98.8 1.8E-08 4.6E-13 84.8 6.7 151 111-315 13-168 (297) 86 cd05068 PTKc_Frk_like Catalyti 98.8 6.2E-08 1.6E-12 80.7 9.3 142 121-314 6-155 (261) 87 cd06640 STKc_MST4 Serine/threo 98.8 1.5E-08 3.9E-13 85.4 6.1 148 116-315 2-154 (277) 88 cd06637 STKc_TNIK Serine/threo 98.8 8E-09 2E-13 87.5 4.7 141 125-315 12-164 (272) 89 cd05577 STKc_GRK STKc_GRK: Ser 98.8 8.3E-08 2.1E-12 79.7 9.8 144 127-316 1-149 (277) 90 cd05600 STKc_Sid2p_Dbf2p STKc_ 98.8 2.2E-08 5.7E-13 84.1 6.8 224 125-433 7-242 (333) 91 cd05614 STKc_MSK2_N STKc_MSK2_ 98.8 2.5E-08 6.2E-13 83.8 6.9 143 125-312 6-155 (332) 92 cd05595 STKc_PKB_beta STKc_PKB 98.8 5.7E-08 1.4E-12 81.0 8.8 136 127-311 3-144 (323) 93 cd06626 STKc_MEKK4 Serine/thre 98.8 2.3E-08 5.9E-13 84.0 6.8 141 125-315 6-152 (264) 94 cd05073 PTKc_Hck Catalytic Dom 98.8 1.3E-08 3.4E-13 85.8 5.5 142 120-314 5-154 (260) 95 cd06641 STKc_MST3 Serine/threo 98.8 1.7E-08 4.3E-13 85.0 6.1 144 116-315 2-154 (277) 96 cd05573 STKc_ROCK_NDR_like STK 98.8 1.7E-08 4.2E-13 85.1 6.0 139 125-315 7-154 (354) 97 cd06655 STKc_PAK2 Serine/threo 98.8 2.5E-08 6.3E-13 83.7 6.9 151 111-315 13-168 (296) 98 cd05035 PTKc_Axl_like Catalyti 98.8 1.2E-08 2.9E-13 86.3 5.2 152 124-314 4-165 (273) 99 cd05630 STKc_GRK6 STKc_GRK6: S 98.8 6.9E-08 1.8E-12 80.3 9.1 144 125-315 6-155 (285) 100 cd05072 PTKc_Lyn Catalytic Dom 98.8 3.6E-08 9.2E-13 82.5 7.6 143 121-315 6-156 (261) 101 smart00219 TyrKc Tyrosine kina 98.8 2.9E-08 7.5E-13 83.2 7.0 143 123-314 3-155 (258) 102 cd06609 STKc_MST3_like Serine/ 98.8 4E-08 1E-12 82.1 7.6 140 125-315 7-151 (274) 103 cd06645 STKc_MAP4K3 Serine/thr 98.7 2.7E-08 6.9E-13 83.4 6.5 143 121-315 9-159 (267) 104 cd05571 STKc_PKB STKc_PKB: Ser 98.7 1.2E-07 3E-12 78.5 9.7 136 127-311 3-144 (323) 105 cd05633 STKc_GRK3 STKc_GRK3: S 98.7 3.2E-08 8.2E-13 82.9 6.8 143 127-315 2-150 (279) 106 cd05042 PTKc_Aatyk Catalytic D 98.7 5.8E-08 1.5E-12 80.8 8.1 140 125-311 1-149 (269) 107 cd05092 PTKc_TrkA Catalytic Do 98.7 6.9E-08 1.8E-12 80.3 8.4 144 124-315 10-175 (280) 108 cd05609 STKc_MAST STKc_MAST: S 98.7 7.8E-08 2E-12 79.9 8.7 137 125-310 7-149 (305) 109 cd07836 STKc_Pho85 The catalyt 98.7 2.7E-08 6.9E-13 83.5 6.3 136 125-312 6-150 (284) 110 cd06613 STKc_MAP4K3_like Serin 98.7 1.7E-08 4.3E-13 85.0 5.2 140 124-315 8-153 (261) 111 cd05051 PTKc_DDR Catalytic Dom 98.7 2E-07 5.2E-12 76.6 10.7 142 124-313 10-181 (296) 112 cd07867 STKc_CDC2L6 The cataly 98.7 3.5E-08 9E-13 82.6 6.7 142 126-314 8-164 (317) 113 cd05080 PTKc_Tyk2_rpt2 Catalyt 98.7 7.6E-08 1.9E-12 80.0 8.5 140 125-314 10-159 (283) 114 cd05608 STKc_GRK1 STKc_GRK1: S 98.7 4.4E-08 1.1E-12 81.8 7.2 141 127-314 1-149 (280) 115 cd05611 STKc_Rim15_like STKc_R 98.7 2.3E-08 5.8E-13 84.0 5.6 135 125-310 2-145 (260) 116 PTZ00263 protein kinase A cata 98.7 9.4E-08 2.4E-12 79.3 8.7 145 121-314 18-170 (329) 117 cd05069 PTKc_Yes Catalytic Dom 98.7 3E-08 7.6E-13 83.1 6.2 144 120-315 5-155 (260) 118 cd06652 STKc_MEKK2 Serine/thre 98.7 3.5E-08 8.9E-13 82.6 6.5 139 125-313 8-157 (265) 119 cd07875 STKc_JNK1 The catalyti 98.7 3.6E-08 9.3E-13 82.4 6.6 149 121-314 24-178 (364) 120 cd06653 STKc_MEKK3_like_1 Seri 98.7 3E-08 7.8E-13 83.0 6.2 143 125-314 8-158 (264) 121 cd05081 PTKc_Jak2_Jak3_rpt2 Ca 98.7 9.1E-08 2.3E-12 79.4 8.6 144 125-313 10-159 (284) 122 cd06625 STKc_MEKK3_like Serine 98.7 3.3E-08 8.5E-13 82.7 6.4 140 125-314 8-156 (263) 123 cd05066 PTKc_EphR_A Catalytic 98.7 8.3E-08 2.1E-12 79.7 8.4 146 123-314 8-158 (267) 124 cd05118 STKc_CMGC The catalyti 98.7 3.1E-08 7.8E-13 83.0 6.1 138 125-315 5-151 (283) 125 cd07830 STKc_MAK_like The cata 98.7 2.6E-08 6.5E-13 83.6 5.7 139 125-314 5-151 (283) 126 cd06642 STKc_STK25_YSK1 Serine 98.7 3.3E-08 8.4E-13 82.8 6.2 148 116-315 2-154 (277) 127 cd05082 PTKc_Csk Catalytic Dom 98.7 9.5E-08 2.4E-12 79.2 8.4 144 120-314 5-154 (256) 128 cd06622 PKc_MAPKK_PBS2_like Pr 98.7 4.1E-08 1E-12 82.1 6.5 142 125-314 7-155 (286) 129 cd05626 STKc_LATS2 STKc_LATS2: 98.7 2.3E-08 5.8E-13 84.0 5.1 139 125-312 7-151 (381) 130 cd07850 STKc_JNK The catalytic 98.7 2E-08 5.2E-13 84.4 4.9 153 118-315 13-171 (353) 131 cd06633 STKc_TAO3 Serine/threo 98.7 7.4E-08 1.9E-12 80.1 7.7 151 115-314 18-173 (313) 132 cd07839 STKc_CDK5 The catalyti 98.7 1.9E-08 4.9E-13 84.6 4.7 138 125-313 6-150 (284) 133 cd05575 STKc_SGK STKc_SGK: Ser 98.7 2.8E-08 7.2E-13 83.3 5.6 134 127-311 3-145 (323) 134 cd05583 STKc_MSK_N STKc_MSK_N: 98.7 1.3E-07 3.4E-12 78.1 9.0 146 125-314 6-157 (288) 135 cd05628 STKc_NDR1 STKc_NDR1: S 98.7 4E-08 1E-12 82.1 6.3 146 125-319 7-158 (363) 136 cd05584 STKc_p70S6K STKc_p70S6 98.7 1.6E-07 4.2E-12 77.4 9.5 140 126-311 3-149 (323) 137 cd05601 STKc_CRIK STKc_CRIK: S 98.7 5.3E-08 1.4E-12 81.2 7.0 140 125-315 7-155 (330) 138 cd05039 PTKc_Csk_like Catalyti 98.7 5.4E-08 1.4E-12 81.1 7.0 137 123-312 10-152 (256) 139 cd05116 PTKc_Syk Catalytic Dom 98.7 3.4E-07 8.6E-12 75.0 11.0 141 126-314 2-147 (257) 140 cd07860 STKc_CDK2_3 The cataly 98.7 4.5E-08 1.1E-12 81.8 6.6 137 125-313 6-151 (284) 141 cd05034 PTKc_Src_like Catalyti 98.7 3.2E-08 8.2E-13 82.9 5.8 142 121-314 6-155 (261) 142 cd05631 STKc_GRK4 STKc_GRK4: S 98.7 2E-08 5.1E-13 84.5 4.7 144 125-315 6-155 (285) 143 cd07876 STKc_JNK2 The catalyti 98.7 3.4E-08 8.6E-13 82.7 5.9 151 119-314 19-175 (359) 144 cd05598 STKc_LATS STKc_LATS: S 98.7 3E-08 7.6E-13 83.1 5.5 142 122-312 2-151 (376) 145 cd05629 STKc_NDR_like_fungal S 98.7 6E-08 1.5E-12 80.8 7.1 137 125-313 7-152 (377) 146 cd07848 STKc_CDKL5 The catalyt 98.7 3.7E-08 9.3E-13 82.4 6.0 144 125-315 7-153 (287) 147 cd05632 STKc_GRK5 STKc_GRK5: S 98.7 8.1E-08 2.1E-12 79.7 7.7 145 123-314 2-154 (285) 148 cd06610 STKc_OSR1_SPAK Serine/ 98.7 3.4E-08 8.8E-13 82.6 5.7 139 125-314 7-154 (266) 149 cd05052 PTKc_Abl Catalytic Dom 98.7 7.5E-08 1.9E-12 80.0 7.4 143 120-313 5-155 (263) 150 cd05605 STKc_GRK4_like STKc_GR 98.7 1.5E-07 3.8E-12 77.7 8.9 144 125-315 6-155 (285) 151 cd05586 STKc_Sck1_like STKc_Sc 98.7 1.1E-07 2.9E-12 78.6 8.3 135 127-310 1-144 (330) 152 cd06646 STKc_MAP4K5 Serine/thr 98.7 4.8E-08 1.2E-12 81.5 6.3 141 125-315 15-159 (267) 153 cd05110 PTKc_HER4 Catalytic Do 98.7 1.7E-07 4.4E-12 77.2 9.2 145 122-315 8-162 (303) 154 COG3642 Mn2+-dependent serine/ 98.7 8.7E-08 2.2E-12 79.5 7.6 97 205-314 46-142 (204) 155 cd06630 STKc_MEKK1 Serine/thre 98.7 8.3E-08 2.1E-12 79.7 7.5 141 125-314 6-156 (268) 156 cd05098 PTKc_FGFR1 Catalytic D 98.7 2.3E-07 5.9E-12 76.2 9.8 161 108-314 3-192 (307) 157 cd07870 STKc_PFTAIRE2 The cata 98.7 9.5E-08 2.4E-12 79.2 7.7 133 125-311 11-152 (291) 158 cd05086 PTKc_Aatyk2 Catalytic 98.7 9.2E-08 2.3E-12 79.3 7.6 136 126-309 2-146 (268) 159 cd05046 PTK_CCK4 Catalytic Dom 98.7 1.3E-07 3.2E-12 78.2 8.3 145 121-312 5-167 (275) 160 cd05090 PTKc_Ror1 Catalytic Do 98.7 3.8E-08 9.8E-13 82.3 5.7 145 122-314 8-176 (283) 161 cd05606 STKc_beta_ARK STKc_bet 98.7 4.3E-08 1.1E-12 81.9 5.9 140 127-315 2-150 (278) 162 cd06651 STKc_MEKK3 Serine/thre 98.7 4.2E-08 1.1E-12 82.0 5.8 141 125-313 8-157 (266) 163 cd05590 STKc_nPKC_eta STKc_nPK 98.7 7.8E-08 2E-12 79.9 7.2 137 127-311 3-145 (320) 164 cd07851 STKc_p38 The catalytic 98.7 1.9E-07 4.7E-12 77.0 9.1 142 125-314 21-170 (343) 165 cd07834 STKc_MAPK The catalyti 98.7 1.4E-08 3.5E-13 85.8 3.2 138 125-314 6-155 (330) 166 cd05570 STKc_PKC STKc_PKC: Ser 98.7 1.7E-07 4.3E-12 77.3 8.7 134 127-311 3-145 (318) 167 PTZ00024 cyclin-dependent prot 98.7 9.2E-08 2.4E-12 79.3 7.4 143 125-313 14-162 (325) 168 cd05627 STKc_NDR2 STKc_NDR2: S 98.7 2.6E-08 6.5E-13 83.6 4.5 249 125-433 7-276 (360) 169 cd06611 STKc_SLK_like Serine/t 98.7 1.1E-07 2.9E-12 78.6 7.8 141 125-315 11-156 (280) 170 cd05587 STKc_cPKC STKc_cPKC: 98.7 1.1E-07 2.7E-12 78.9 7.6 139 125-311 6-150 (324) 171 cd07847 STKc_CDKL1_4 The catal 98.7 4.9E-08 1.2E-12 81.5 5.9 142 125-313 7-151 (286) 172 cd05087 PTKc_Aatyk1_Aatyk3 Cat 98.7 1.3E-07 3.4E-12 78.1 8.1 138 125-310 1-148 (269) 173 cd06629 STKc_MAPKKK_Bck1_like 98.7 3.7E-08 9.4E-13 82.4 5.3 144 125-313 7-159 (272) 174 cd05111 PTK_HER3 Pseudokinase 98.7 2.5E-07 6.5E-12 75.9 9.5 142 125-316 13-163 (279) 175 cd05593 STKc_PKB_gamma STKc_PK 98.7 1.3E-07 3.3E-12 78.2 8.0 136 127-311 3-144 (325) 176 cd05613 STKc_MSK1_N STKc_MSK1_ 98.7 3.3E-08 8.3E-13 82.8 5.0 141 125-313 6-156 (290) 177 cd05057 PTKc_EGFR_like Catalyt 98.7 1.3E-07 3.3E-12 78.2 7.9 148 122-315 8-162 (279) 178 cd05603 STKc_SGK2 STKc_SGK2: S 98.7 1.6E-07 4E-12 77.5 8.3 137 127-311 3-145 (321) 179 cd05591 STKc_nPKC_epsilon STKc 98.7 1.7E-07 4.4E-12 77.2 8.4 134 127-311 3-145 (321) 180 cd07865 STKc_CDK9 The catalyti 98.7 8.9E-08 2.3E-12 79.4 6.9 142 122-313 13-170 (310) 181 cd05047 PTKc_Tie Catalytic Dom 98.6 6.8E-07 1.7E-11 72.6 11.4 142 127-312 3-162 (270) 182 cd05060 PTKc_Syk_like Catalyti 98.6 2.7E-07 6.8E-12 75.8 9.2 140 125-313 1-146 (257) 183 cd07880 STKc_p38gamma_MAPK12 T 98.6 8E-08 2E-12 79.8 6.5 145 125-314 21-170 (343) 184 cd07842 STKc_CDK8_like The cat 98.6 1E-07 2.6E-12 79.0 7.0 147 125-314 6-164 (315) 185 cd07864 STKc_CDK12 The catalyt 98.6 4.8E-08 1.2E-12 81.5 5.4 140 125-313 13-167 (302) 186 cd05044 PTKc_c-ros Catalytic D 98.6 1.2E-07 3.2E-12 78.3 7.4 140 126-313 2-163 (270) 187 cd07840 STKc_CDK9_like The cat 98.6 7.7E-08 2E-12 79.9 6.3 140 125-314 5-152 (287) 188 cd05599 STKc_NDR_like STKc_NDR 98.6 7.8E-08 2E-12 79.9 6.3 144 125-320 7-159 (364) 189 cd05058 PTKc_Met_Ron Catalytic 98.6 6.1E-07 1.6E-11 73.0 10.9 142 127-315 3-151 (262) 190 cd07833 STKc_CDKL The catalyti 98.6 5.1E-08 1.3E-12 81.3 5.3 142 125-315 7-153 (288) 191 cd05602 STKc_SGK1 STKc_SGK1: S 98.6 1.7E-07 4.4E-12 77.2 8.0 137 127-311 3-145 (325) 192 cd05624 STKc_MRCK_beta STKc_MR 98.6 3.2E-08 8.3E-13 82.8 4.3 141 125-314 7-154 (331) 193 cd05084 PTKc_Fes Catalytic Dom 98.6 2E-07 5.1E-12 76.7 8.3 138 126-312 2-144 (252) 194 cd06634 STKc_TAO2 Serine/threo 98.6 1.5E-07 3.8E-12 77.7 7.6 152 115-315 12-168 (308) 195 cd05615 STKc_cPKC_alpha STKc_c 98.6 4E-07 1E-11 74.4 9.8 139 125-311 6-150 (323) 196 cd05070 PTKc_Fyn_Yrk Catalytic 98.6 6.3E-08 1.6E-12 80.6 5.7 143 121-315 6-155 (260) 197 cd07831 STKc_MOK The catalytic 98.6 8.3E-08 2.1E-12 79.7 6.3 138 125-314 5-151 (282) 198 cd06636 STKc_MAP4K4_6 Serine/t 98.6 1.2E-07 3E-12 78.5 7.0 146 125-314 22-173 (282) 199 cd07829 STKc_CDK_like The cata 98.6 1.5E-07 3.8E-12 77.7 7.6 140 125-313 5-149 (282) 200 cd07861 STKc_CDK1_euk The cata 98.6 4.7E-08 1.2E-12 81.6 5.0 139 125-313 6-152 (285) 201 cd05585 STKc_YPK1_like STKc_YP 98.6 1.5E-07 3.8E-12 77.7 7.6 135 127-310 1-141 (312) 202 cd05062 PTKc_IGF-1R Catalytic 98.6 8.6E-08 2.2E-12 79.6 6.3 145 121-314 6-171 (277) 203 cd06632 STKc_MEKK1_plant Serin 98.6 6.5E-08 1.6E-12 80.5 5.6 140 125-314 6-154 (258) 204 cd05050 PTKc_Musk Catalytic Do 98.6 9.3E-08 2.4E-12 79.3 6.4 143 125-314 11-182 (288) 205 cd05616 STKc_cPKC_beta STKc_cP 98.6 4.7E-07 1.2E-11 73.8 10.0 139 125-311 6-150 (323) 206 cd07873 STKc_PCTAIRE1 The cata 98.6 7.4E-08 1.9E-12 80.0 5.8 133 125-311 12-153 (301) 207 cd07835 STKc_CDK1_like The cat 98.6 1E-07 2.6E-12 78.9 6.5 136 125-313 5-150 (283) 208 cd06644 STKc_STK10_LOK Serine/ 98.6 2.6E-07 6.6E-12 75.8 8.5 139 125-313 18-161 (292) 209 cd07843 STKc_CDC2L1 The cataly 98.6 1.4E-07 3.7E-12 77.8 7.1 141 125-315 11-159 (293) 210 cd05088 PTKc_Tie2 Catalytic Do 98.6 7.5E-07 1.9E-11 72.3 10.7 145 120-310 6-172 (303) 211 cd05056 PTKc_FAK Catalytic Dom 98.6 2E-07 5.2E-12 76.6 7.8 144 123-315 10-160 (270) 212 cd05623 STKc_MRCK_alpha STKc_M 98.6 3.5E-08 8.9E-13 82.6 3.9 140 125-313 7-153 (332) 213 PTZ00266 NIMA-related protein 98.6 1.2E-07 3.1E-12 78.3 6.6 146 125-315 15-182 (484) 214 cd05582 STKc_RSK_N STKc_RSK_N: 98.6 1.4E-07 3.6E-12 77.9 6.9 138 126-311 3-147 (318) 215 cd05619 STKc_nPKC_theta STKc_n 98.6 2.6E-07 6.6E-12 75.8 8.2 137 127-311 3-145 (316) 216 cd07878 STKc_p38beta_MAPK11 Th 98.6 5.8E-08 1.5E-12 80.9 4.9 157 110-314 4-170 (343) 217 cd05589 STKc_PKN STKc_PKN: Ser 98.6 2.1E-07 5.4E-12 76.5 7.8 141 125-311 5-150 (324) 218 cd05597 STKc_DMPK_like STKc_DM 98.6 5.3E-08 1.4E-12 81.2 4.6 141 125-314 7-154 (331) 219 cd05091 PTKc_Ror2 Catalytic Do 98.6 5.8E-07 1.5E-11 73.1 9.9 148 121-316 5-178 (283) 220 cd07868 STKc_CDK8 The catalyti 98.6 1E-07 2.6E-12 79.0 5.9 140 126-313 8-163 (317) 221 cd05061 PTKc_InsR Catalytic Do 98.6 2.8E-07 7E-12 75.6 8.2 149 120-315 5-172 (288) 222 PRK10359 lipopolysaccharide co 98.6 2.6E-07 6.7E-12 75.8 8.0 130 145-310 53-182 (232) 223 cd05594 STKc_PKB_alpha STKc_PK 98.6 2.6E-07 6.7E-12 75.8 7.9 133 127-311 3-145 (324) 224 cd05083 PTKc_Chk Catalytic Dom 98.6 4.6E-07 1.2E-11 73.9 9.2 139 120-311 5-149 (254) 225 cd07844 STKc_PCTAIRE_like The 98.6 1.3E-07 3.2E-12 78.3 6.2 132 125-310 11-151 (291) 226 cd07845 STKc_CDK10 The catalyt 98.6 1.5E-07 3.8E-12 77.7 6.5 139 125-313 13-159 (309) 227 cd05620 STKc_nPKC_delta STKc_n 98.6 2.4E-07 6.1E-12 76.1 7.5 137 127-311 3-145 (316) 228 cd05578 STKc_Yank1 STKc_Yank1: 98.6 7.8E-08 2E-12 79.9 5.0 139 125-315 6-153 (258) 229 cd07871 STKc_PCTAIRE3 The cata 98.6 2.8E-07 7.2E-12 75.5 7.9 136 125-312 11-153 (288) 230 cd05054 PTKc_VEGFR Catalytic D 98.6 3.3E-07 8.4E-12 75.0 8.1 34 279-312 190-223 (337) 231 cd05048 PTKc_Ror Catalytic Dom 98.6 2.6E-07 6.6E-12 75.9 7.4 146 120-313 4-175 (283) 232 cd07855 STKc_ERK5 The catalyti 98.6 8.2E-08 2.1E-12 79.7 4.7 142 125-314 11-161 (336) 233 cd06647 STKc_PAK_I Serine/thre 98.6 2.1E-07 5.4E-12 76.5 6.7 139 125-315 25-168 (293) 234 cd05053 PTKc_FGFR Catalytic Do 98.6 3E-07 7.6E-12 75.4 7.5 154 115-314 6-185 (294) 235 cd05055 PTKc_PDGFR Catalytic D 98.6 1.5E-07 3.9E-12 77.6 6.0 152 116-312 30-191 (302) 236 cd07832 STKc_CCRK The catalyti 98.6 6.8E-08 1.7E-12 80.4 4.1 140 125-315 6-152 (286) 237 cd07869 STKc_PFTAIRE1 The cata 98.6 2.7E-07 7E-12 75.7 7.2 134 125-312 11-153 (303) 238 cd05040 PTKc_Ack_like Catalyti 98.6 4.3E-07 1.1E-11 74.2 8.2 142 125-314 1-149 (257) 239 cd05089 PTKc_Tie1 Catalytic Do 98.6 5.8E-07 1.5E-11 73.1 8.8 142 123-310 6-167 (297) 240 cd07874 STKc_JNK3 The catalyti 98.6 8.7E-08 2.2E-12 79.5 4.6 152 119-315 15-172 (355) 241 cd05592 STKc_nPKC_theta_delta 98.6 3.6E-07 9.2E-12 74.7 7.8 137 127-311 3-145 (316) 242 cd07877 STKc_p38alpha_MAPK14 T 98.5 3.3E-07 8.3E-12 75.1 7.4 156 111-314 7-172 (345) 243 cd07837 STKc_CdkB_plant The ca 98.5 1.5E-07 3.7E-12 77.8 5.5 141 125-313 7-162 (295) 244 cd07853 STKc_NLK The catalytic 98.5 2.5E-07 6.3E-12 76.0 6.7 143 125-315 6-156 (372) 245 cd07852 STKc_MAPK15 The cataly 98.5 6.5E-08 1.7E-12 80.5 3.7 147 119-315 5-160 (337) 246 cd06631 STKc_YSK4 Serine/threo 98.5 5.2E-08 1.3E-12 81.2 3.2 144 125-313 6-153 (265) 247 cd05621 STKc_ROCK2 STKc_ROCK2: 98.5 1.9E-07 4.8E-12 76.9 6.0 142 120-314 42-194 (370) 248 cd07879 STKc_p38delta_MAPK13 T 98.5 1.6E-07 4E-12 77.6 5.6 142 125-315 21-170 (342) 249 cd05101 PTKc_FGFR2 Catalytic D 98.5 3.1E-07 7.9E-12 75.3 7.1 155 114-314 8-189 (304) 250 cd05604 STKc_SGK3 STKc_SGK3: S 98.5 5E-07 1.3E-11 73.6 8.1 137 127-311 3-145 (325) 251 cd05596 STKc_ROCK STKc_ROCK: S 98.5 2.2E-07 5.6E-12 76.4 6.1 143 120-315 42-195 (370) 252 cd05607 STKc_GRK7 STKc_GRK7: S 98.5 3.3E-07 8.5E-12 75.0 7.1 141 127-314 1-147 (277) 253 cd05093 PTKc_TrkB Catalytic Do 98.5 2.3E-07 5.8E-12 76.2 6.2 144 124-313 10-171 (288) 254 cd06624 STKc_ASK Serine/threon 98.5 1.2E-07 3.1E-12 78.4 4.7 149 116-314 3-161 (268) 255 cd07866 STKc_BUR1 The catalyti 98.5 2.4E-07 6.1E-12 76.1 6.2 140 125-314 14-167 (311) 256 cd05617 STKc_aPKC_zeta STKc_aP 98.5 1.8E-07 4.6E-12 77.1 5.4 138 126-311 2-145 (327) 257 cd07849 STKc_ERK1_2_like The c 98.5 3E-07 7.6E-12 75.4 6.5 144 125-314 11-158 (336) 258 cd05094 PTKc_TrkC Catalytic Do 98.5 3.2E-07 8.3E-12 75.1 6.6 143 124-313 10-174 (291) 259 cd05588 STKc_aPKC STKc_aPKC: S 98.5 3.9E-07 9.9E-12 74.5 7.0 137 127-311 3-145 (329) 260 cd05618 STKc_aPKC_iota STKc_aP 98.5 1.8E-07 4.6E-12 77.1 5.1 137 127-311 3-145 (329) 261 cd06618 PKc_MKK7 Protein kinas 98.5 3.7E-07 9.4E-12 74.7 6.7 146 120-315 14-168 (296) 262 cd05622 STKc_ROCK1 STKc_ROCK1: 98.5 3.2E-07 8.2E-12 75.1 6.3 141 122-315 44-195 (371) 263 KOG0574 consensus 98.5 7.8E-07 2E-11 72.1 8.2 267 103-428 18-302 (502) 264 cd05108 PTKc_EGFR Catalytic Do 98.5 1.9E-06 4.7E-11 69.2 10.2 146 122-316 8-163 (316) 265 cd07859 STKc_TDY_MAPK_plant Th 98.5 5.5E-07 1.4E-11 73.3 7.3 139 125-312 6-153 (338) 266 cd07872 STKc_PCTAIRE2 The cata 98.5 6.8E-07 1.7E-11 72.6 7.7 135 125-311 12-153 (309) 267 cd07863 STKc_CDK4 The catalyti 98.5 4.8E-07 1.2E-11 73.7 6.8 146 125-314 6-160 (288) 268 cd07838 STKc_CDK4_6_like The c 98.5 9.8E-08 2.5E-12 79.1 3.2 144 125-315 5-160 (287) 269 PTZ00283 serine/threonine prot 98.5 6.3E-07 1.6E-11 72.8 7.3 254 125-432 38-304 (496) 270 cd05045 PTKc_RET Catalytic Dom 98.5 2.6E-06 6.6E-11 68.1 10.4 142 127-314 3-174 (285) 271 cd05109 PTKc_HER2 Catalytic Do 98.5 1.3E-06 3.4E-11 70.3 9.0 141 125-314 13-161 (279) 272 cd05036 PTKc_ALK_LTK Catalytic 98.5 7.3E-07 1.9E-11 72.3 7.4 147 121-313 6-170 (277) 273 cd05043 PTK_Ryk Pseudokinase D 98.5 4.9E-06 1.2E-10 66.0 11.6 147 123-314 10-169 (280) 274 KOG0611 consensus 98.5 2.9E-06 7.3E-11 67.7 10.2 227 122-407 56-289 (668) 275 cd06616 PKc_MKK4 Protein kinas 98.4 9E-07 2.3E-11 71.7 7.6 145 122-315 5-161 (288) 276 cd07854 STKc_MAPK4_6 The catal 98.4 4.2E-07 1.1E-11 74.2 5.6 145 125-315 11-168 (342) 277 KOG0661 consensus 98.4 5.6E-07 1.4E-11 73.2 6.3 180 125-360 16-202 (538) 278 cd05576 STKc_RPK118_like STKc_ 98.4 2.4E-07 6.2E-12 76.1 4.3 125 130-314 4-137 (237) 279 cd05099 PTKc_FGFR4 Catalytic D 98.4 5.9E-07 1.5E-11 73.1 6.2 153 114-313 5-185 (314) 280 cd05100 PTKc_FGFR3 Catalytic D 98.4 1.4E-06 3.6E-11 70.2 7.7 152 116-314 7-186 (334) 281 KOG2270 consensus 98.4 1.8E-05 4.5E-10 61.6 12.9 220 125-390 150-376 (520) 282 cd07862 STKc_CDK6 The catalyti 98.4 2.3E-06 5.8E-11 68.5 8.2 145 125-314 7-162 (290) 283 cd05103 PTKc_VEGFR2 Catalytic 98.4 8E-07 2E-11 72.0 5.9 34 279-312 196-229 (343) 284 pfam03881 Fructosamin_kin Fruc 98.4 1.7E-06 4.2E-11 69.6 7.4 232 101-348 1-249 (287) 285 cd07856 STKc_Sty1_Hog1 The cat 98.4 1.4E-06 3.5E-11 70.2 7.0 140 125-312 16-158 (328) 286 KOG0594 consensus 98.4 1.3E-06 3.3E-11 70.5 6.8 146 117-311 10-169 (323) 287 pfam06176 WaaY Lipopolysacchar 98.4 7.8E-07 2E-11 72.1 5.6 130 145-310 53-182 (229) 288 cd07858 STKc_TEY_MAPK_plant Th 98.4 1E-06 2.6E-11 71.2 6.2 145 125-314 11-160 (337) 289 cd05078 PTK_Jak2_Jak3_rpt1 Pse 98.4 1.4E-06 3.7E-11 70.1 6.9 139 125-313 1-159 (258) 290 cd05071 PTKc_Src Catalytic Dom 98.4 8.3E-07 2.1E-11 71.9 5.5 142 120-314 5-154 (262) 291 cd05102 PTKc_VEGFR3 Catalytic 98.3 3.7E-06 9.5E-11 66.9 8.3 35 279-313 191-225 (338) 292 cd07857 STKc_MPK1 The catalyti 98.3 1E-06 2.6E-11 71.2 5.4 141 125-314 6-157 (332) 293 cd05106 PTKc_CSF-1R Catalytic 98.3 4.4E-06 1.1E-10 66.3 8.6 36 279-314 229-264 (374) 294 KOG0583 consensus 98.3 7.9E-07 2E-11 72.1 4.5 143 124-313 22-172 (370) 295 KOG0192 consensus 98.3 1.2E-05 3.1E-10 62.8 10.4 221 125-403 47-281 (362) 296 cd05104 PTKc_Kit Catalytic Dom 98.3 7.4E-06 1.9E-10 64.5 9.2 36 279-314 231-266 (375) 297 cd06617 PKc_MKK3_6 Protein kin 98.3 2.5E-07 6.3E-12 76.0 1.4 142 125-315 7-157 (280) 298 KOG2268 consensus 98.2 3.7E-06 9.4E-11 66.9 5.8 158 146-340 116-273 (465) 299 cd05037 PTK_Jak_rpt1 Pseudokin 98.2 9.2E-06 2.3E-10 63.8 7.6 148 125-312 1-158 (259) 300 cd05077 PTK_Jak1_rpt1 Pseudoki 98.2 9.1E-06 2.3E-10 63.9 7.3 139 125-310 1-160 (262) 301 KOG0595 consensus 98.2 3.2E-06 8.1E-11 67.4 4.9 138 126-316 17-169 (429) 302 cd05150 APH Aminoglycoside 3'- 98.1 0.00013 3.4E-09 54.8 12.8 77 282-361 164-243 (244) 303 cd05151 ChoK Choline Kinase (C 98.1 8.3E-06 2.1E-10 64.2 6.3 105 203-316 37-141 (170) 304 KOG0605 consensus 98.1 7.7E-06 2E-10 64.4 5.4 149 121-320 141-299 (550) 305 KOG0667 consensus 98.0 1.1E-05 2.7E-10 63.3 5.4 178 124-360 191-380 (586) 306 KOG0660 consensus 98.0 1.5E-05 3.9E-10 62.1 5.5 181 125-356 28-216 (359) 307 PTZ00284 protein kinase; Provi 98.0 3.8E-05 9.7E-10 59.0 7.3 180 125-360 135-337 (467) 308 cd05154 ACAD10_11_like Acyl-Co 97.9 6.1E-05 1.6E-09 57.5 8.2 144 126-316 5-211 (223) 309 KOG4250 consensus 97.9 2.3E-06 5.9E-11 68.5 0.9 149 124-316 18-178 (732) 310 KOG0193 consensus 97.9 1.3E-05 3.2E-10 62.7 4.6 146 114-311 385-537 (678) 311 KOG0600 consensus 97.9 2.1E-05 5.3E-10 61.1 5.6 154 112-321 111-277 (560) 312 cd05076 PTK_Tyk2_rpt1 Pseudoki 97.9 4.5E-06 1.1E-10 66.2 2.0 155 127-309 3-171 (274) 313 pfam01636 APH Phosphotransfera 97.9 9.2E-05 2.4E-09 56.1 8.6 183 125-316 3-203 (239) 314 KOG0610 consensus 97.9 5.9E-05 1.5E-09 57.5 7.2 144 119-312 75-229 (459) 315 KOG0581 consensus 97.9 3E-05 7.6E-10 59.9 5.6 148 122-319 80-236 (364) 316 cd05107 PTKc_PDGFR_beta Cataly 97.9 0.00012 3E-09 55.3 8.6 59 112-172 32-97 (401) 317 KOG0608 consensus 97.9 6.6E-05 1.7E-09 57.2 7.1 105 206-312 670-779 (1034) 318 KOG0198 consensus 97.8 2.8E-05 7.1E-10 60.1 5.0 138 125-314 23-170 (313) 319 PRK06148 hypothetical protein; 97.8 0.0003 7.6E-09 52.1 10.1 195 92-311 4-235 (1015) 320 KOG1167 consensus 97.8 0.00018 4.6E-09 53.8 8.9 165 78-313 13-184 (418) 321 pfam06293 Kdo Lipopolysacchari 97.8 0.00012 3E-09 55.2 7.7 121 201-327 54-189 (206) 322 PRK09550 mtnK methylthioribose 97.8 8.3E-05 2.1E-09 56.4 6.7 64 267-333 209-274 (398) 323 KOG0582 consensus 97.8 0.00018 4.7E-09 53.7 8.3 236 124-419 31-284 (516) 324 KOG0032 consensus 97.8 7.3E-05 1.9E-09 56.8 6.0 146 125-314 41-191 (382) 325 cd05155 APH_ChoK_like_1 Unchar 97.7 0.00015 3.9E-09 54.3 7.3 181 131-331 7-209 (235) 326 KOG1163 consensus 97.7 0.00018 4.7E-09 53.7 7.3 136 125-312 21-164 (341) 327 KOG3087 consensus 97.7 0.00024 6E-09 52.9 7.8 98 206-309 58-163 (229) 328 cd05152 MPH2' Macrolide 2'-Pho 97.7 8E-05 2.1E-09 56.5 5.2 64 279-344 183-247 (276) 329 cd05105 PTKc_PDGFR_alpha Catal 97.7 0.00062 1.6E-08 49.7 9.6 51 122-172 40-97 (400) 330 KOG0659 consensus 97.6 0.00017 4.2E-09 54.1 6.1 186 125-361 8-218 (318) 331 KOG4236 consensus 97.6 0.00018 4.5E-09 53.9 6.0 157 106-315 552-720 (888) 332 KOG0597 consensus 97.6 0.00071 1.8E-08 49.2 8.9 223 125-405 8-235 (808) 333 KOG1166 consensus 97.5 0.00011 2.7E-09 55.6 4.1 179 124-361 703-896 (974) 334 KOG0577 consensus 97.5 0.00031 7.9E-09 52.0 6.4 180 112-337 20-207 (948) 335 PTZ00267 NIMA-related protein 97.5 0.0016 4E-08 46.5 9.7 96 219-316 119-223 (478) 336 KOG1164 consensus 97.5 0.00071 1.8E-08 49.2 7.9 138 125-310 24-175 (322) 337 KOG0603 consensus 97.5 0.00032 8.2E-09 51.8 6.0 77 238-315 391-469 (612) 338 KOG0575 consensus 97.5 7.1E-05 1.8E-09 56.9 2.7 134 126-315 25-171 (592) 339 KOG0612 consensus 97.4 0.0011 2.7E-08 47.9 8.1 68 239-313 151-226 (1317) 340 KOG1095 consensus 97.4 0.00067 1.7E-08 49.4 6.9 194 122-387 695-902 (1025) 341 KOG0585 consensus 97.4 0.0023 5.8E-08 45.3 9.6 159 125-315 103-263 (576) 342 PRK12274 serine/threonine prot 97.4 0.0017 4.3E-08 46.3 8.9 120 206-344 29-149 (198) 343 PRK01723 3-deoxy-D-manno-octul 97.4 0.0013 3.3E-08 47.2 8.2 102 223-328 101-212 (240) 344 cd05166 PI3Kc_II Phosphoinosit 97.4 0.0066 1.7E-07 41.7 11.5 29 286-314 207-236 (353) 345 pfam01633 Choline_kinase Choli 97.3 0.0013 3.3E-08 47.2 7.5 34 281-314 141-175 (208) 346 KOG0587 consensus 97.3 0.0003 7.6E-09 52.1 4.0 150 124-319 24-180 (953) 347 COG2334 Putative homoserine ki 97.3 0.00081 2.1E-08 48.8 6.2 171 125-311 32-228 (331) 348 KOG0593 consensus 97.2 0.00098 2.5E-08 48.1 6.2 133 126-314 9-153 (396) 349 KOG0592 consensus 97.2 0.005 1.3E-07 42.7 9.6 243 114-409 70-326 (604) 350 PRK12396 5-methylribose kinase 97.2 0.015 3.9E-07 38.8 12.2 63 268-333 216-280 (409) 351 COG2112 Predicted Ser/Thr prot 97.2 0.0023 5.9E-08 45.2 7.7 139 125-324 28-170 (201) 352 cd05176 PI3Kc_C2_alpha Phospho 97.2 0.014 3.5E-07 39.2 11.5 28 286-313 207-235 (353) 353 KOG0197 consensus 97.2 0.00079 2E-08 48.8 5.0 140 122-313 209-354 (468) 354 KOG0578 consensus 97.1 0.0046 1.2E-07 42.9 8.8 208 89-355 241-456 (550) 355 KOG1094 consensus 97.1 0.00085 2.2E-08 48.6 5.0 202 123-392 542-763 (807) 356 cd00895 PI3Kc_C2_beta Phosphoi 97.1 0.019 4.7E-07 38.2 11.8 28 286-313 208-236 (354) 357 cd05157 ETNK_euk Ethanolamine 97.1 0.0039 1E-07 43.4 8.0 179 126-314 5-204 (235) 358 KOG0663 consensus 97.1 0.0016 4.1E-08 46.4 5.9 143 122-315 77-230 (419) 359 PRK06149 hypothetical protein; 97.1 0.0037 9.4E-08 43.7 7.7 157 95-310 13-242 (972) 360 KOG1187 consensus 97.0 0.00053 1.4E-08 50.2 3.1 183 121-360 75-270 (361) 361 cd00896 PI3Kc_III Phosphoinosi 97.0 0.043 1.1E-06 35.4 12.7 25 285-309 206-230 (350) 362 cd05153 HomoserineK_II Homoser 97.0 0.0036 9.2E-08 43.7 6.9 33 279-311 173-205 (296) 363 KOG4721 consensus 97.0 0.016 4.1E-07 38.7 10.2 235 80-404 102-347 (904) 364 KOG0596 consensus 96.9 0.0039 1E-07 43.4 6.7 163 205-388 406-588 (677) 365 KOG0588 consensus 96.9 0.00073 1.9E-08 49.1 2.7 135 124-310 17-160 (786) 366 cd05177 PI3Kc_C2_gamma Phospho 96.8 0.056 1.4E-06 34.5 11.9 28 286-313 208-236 (354) 367 KOG2269 consensus 96.8 0.034 8.8E-07 36.1 10.8 137 186-347 322-461 (531) 368 KOG0616 consensus 96.8 0.0098 2.5E-07 40.3 7.8 230 120-412 43-283 (355) 369 cd05174 PI3Kc_IA_delta Phospho 96.7 0.048 1.2E-06 35.0 11.3 28 286-313 213-241 (361) 370 KOG0694 consensus 96.7 0.012 3.1E-07 39.6 8.2 250 126-430 375-629 (694) 371 KOG0196 consensus 96.7 0.00057 1.5E-08 49.9 1.2 179 92-315 603-784 (996) 372 KOG0658 consensus 96.6 0.00011 2.7E-09 55.6 -2.9 145 125-318 30-182 (364) 373 cd00891 PI3Kc Phosphoinositide 96.6 0.029 7.5E-07 36.7 9.4 29 285-313 207-236 (352) 374 COG3173 Predicted aminoglycosi 96.6 0.0016 4E-08 46.5 2.8 39 281-319 198-236 (321) 375 KOG0615 consensus 96.6 0.0079 2E-07 41.1 6.3 143 124-313 177-330 (475) 376 KOG0201 consensus 96.5 0.002 5.2E-08 45.7 3.1 154 114-319 9-168 (467) 377 KOG1989 consensus 96.5 0.015 3.7E-07 39.0 7.4 206 124-372 42-260 (738) 378 PRK05231 homoserine kinase; Pr 96.5 0.077 2E-06 33.4 11.1 73 279-372 185-259 (319) 379 KOG0984 consensus 96.4 0.0076 1.9E-07 41.2 5.5 148 125-319 52-206 (282) 380 COG0515 SPS1 Serine/threonine 96.4 0.01 2.6E-07 40.2 5.8 139 126-313 7-153 (384) 381 KOG0668 consensus 96.3 0.021 5.3E-07 37.8 7.1 208 126-419 45-271 (338) 382 cd05167 PI4Kc_III_alpha Phosph 96.2 0.064 1.6E-06 34.0 9.3 128 286-437 165-293 (311) 383 KOG0591 consensus 96.2 0.13 3.3E-06 31.7 14.8 146 124-318 24-184 (375) 384 KOG0598 consensus 96.2 0.019 4.8E-07 38.2 6.5 143 120-311 24-174 (357) 385 cd05156 ChoK_euk Choline Kinas 96.2 0.027 6.9E-07 37.0 7.1 178 127-311 6-213 (302) 386 KOG0589 consensus 96.1 0.043 1.1E-06 35.4 7.8 154 223-386 64-222 (426) 387 KOG4645 consensus 96.1 0.0076 1.9E-07 41.2 4.0 71 239-315 1310-1387(1509) 388 KOG1006 consensus 96.1 0.0068 1.7E-07 41.6 3.7 142 125-316 70-222 (361) 389 TIGR02721 ycfN_thiK thiamine k 96.1 0.0046 1.2E-07 42.9 2.7 147 203-361 37-226 (262) 390 KOG0670 consensus 96.0 0.017 4.3E-07 38.5 5.4 94 223-318 492-593 (752) 391 KOG3653 consensus 95.9 0.08 2.1E-06 33.3 8.6 144 123-314 214-368 (534) 392 KOG0199 consensus 95.9 0.0085 2.2E-07 40.8 3.6 144 125-318 116-268 (1039) 393 COG3001 Uncharacterized protei 95.9 0.04 1E-06 35.6 7.0 185 100-348 1-248 (286) 394 KOG0194 consensus 95.9 0.021 5.3E-07 37.9 5.5 208 125-383 163-376 (474) 395 cd00893 PI4Kc_III Phosphoinosi 95.8 0.097 2.5E-06 32.6 8.5 128 285-437 143-271 (289) 396 KOG2686 consensus 95.7 0.051 1.3E-06 34.8 6.8 204 100-310 19-242 (366) 397 KOG1151 consensus 95.6 0.039 9.9E-07 35.7 6.0 88 222-315 524-626 (775) 398 cd00894 PI3Kc_IB_gamma Phospho 95.6 0.17 4.3E-06 30.8 9.2 24 286-309 217-240 (365) 399 cd05164 PIKKc Phosphoinositide 95.5 0.034 8.7E-07 36.2 5.4 84 224-309 69-160 (222) 400 KOG0906 consensus 95.4 0.26 6.6E-06 29.3 13.0 167 241-454 638-825 (843) 401 KOG1165 consensus 95.4 0.04 1E-06 35.6 5.4 100 215-319 76-187 (449) 402 cd05168 PI4Kc_III_beta Phospho 95.3 0.29 7.5E-06 28.9 10.4 30 285-314 145-174 (293) 403 KOG0983 consensus 95.2 0.042 1.1E-06 35.5 4.9 144 125-317 98-247 (391) 404 COG0510 ycfN Thiamine kinase a 95.0 0.019 4.8E-07 38.1 2.8 34 282-315 154-187 (269) 405 COG5032 TEL1 Phosphatidylinosi 95.0 0.35 8.8E-06 28.4 10.6 155 202-390 1804-2021(2105) 406 smart00146 PI3Kc Phosphoinosit 94.9 0.014 3.7E-07 39.1 2.0 85 224-310 39-130 (202) 407 COG4857 Predicted kinase [Gene 94.7 0.037 9.4E-07 35.9 3.6 131 192-333 140-281 (408) 408 cd05175 PI3Kc_IA_alpha Phospho 94.6 0.024 6.1E-07 37.4 2.5 44 264-314 201-245 (366) 409 KOG2345 consensus 94.6 0.028 7.1E-07 36.8 2.8 104 206-315 66-182 (302) 410 pfam10707 YrbL-PhoP_reg PhoP r 94.5 0.45 1.1E-05 27.5 9.0 157 125-313 7-174 (199) 411 KOG0579 consensus 94.5 0.15 3.9E-06 31.1 6.3 88 227-315 91-183 (1187) 412 KOG0696 consensus 94.5 0.15 3.9E-06 31.1 6.3 230 121-407 349-587 (683) 413 KOG0586 consensus 94.4 0.03 7.6E-07 36.6 2.6 182 123-363 60-250 (596) 414 TIGR01767 MTRK 5-methylthiorib 94.4 0.1 2.6E-06 32.5 5.2 198 110-334 37-248 (386) 415 COG5072 ALK1 Serine/threonine 94.4 0.056 1.4E-06 34.5 3.9 202 97-310 129-369 (488) 416 PRK11768 serine/threonine prot 94.3 0.02 5.1E-07 38.0 1.5 156 135-308 41-222 (326) 417 KOG1035 consensus 94.3 0.08 2.1E-06 33.3 4.6 196 114-312 472-747 (1351) 418 KOG1027 consensus 94.3 0.13 3.2E-06 31.8 5.6 126 183-317 533-666 (903) 419 cd05165 PI3Kc_I Phosphoinositi 94.3 0.03 7.6E-07 36.6 2.4 29 286-314 217-246 (366) 420 KOG0666 consensus 94.3 0.096 2.5E-06 32.7 4.9 187 115-351 19-223 (438) 421 cd05173 PI3Kc_IA_beta Phosphoi 94.0 0.036 9.1E-07 36.0 2.3 38 265-309 199-236 (362) 422 cd00142 PI3Kc_like Phosphoinos 94.0 0.044 1.1E-06 35.3 2.7 83 223-310 65-158 (219) 423 PTZ00296 choline kinase; Provi 93.9 0.59 1.5E-05 26.6 9.3 220 75-312 66-312 (439) 424 KOG0664 consensus 93.8 0.13 3.2E-06 31.7 4.7 175 125-351 59-241 (449) 425 cd00892 PIKKc_ATR ATR (Ataxia 93.4 0.06 1.5E-06 34.3 2.5 27 283-309 141-168 (237) 426 KOG0902 consensus 93.4 0.05 1.3E-06 34.9 2.1 128 286-437 1657-1784(1803) 427 cd05170 PIKKc_SMG1 Suppressor 93.1 0.077 2E-06 33.4 2.8 27 283-309 211-238 (307) 428 pfam00454 PI3_PI4_kinase Phosp 93.1 0.064 1.6E-06 34.0 2.3 27 283-309 134-161 (233) 429 smart00587 CHK ZnF_C4 abd HLH 93.0 0.084 2.1E-06 33.1 2.8 34 283-316 122-160 (196) 430 PRK09902 hypothetical protein; 93.0 0.8 2E-05 25.6 8.0 117 202-337 63-196 (216) 431 cd05172 PIKKc_DNA-PK DNA-depen 92.9 0.076 1.9E-06 33.5 2.5 26 284-309 139-165 (235) 432 cd05171 PIKKc_ATM Ataxia telan 92.8 0.075 1.9E-06 33.5 2.4 26 284-309 184-210 (279) 433 KOG0599 consensus 92.8 0.095 2.4E-06 32.7 2.9 159 117-317 13-178 (411) 434 cd05169 PIKKc_TOR TOR (Target 92.7 0.093 2.4E-06 32.8 2.6 27 283-309 183-210 (280) 435 pfam07914 DUF1679 Protein of u 92.6 0.89 2.3E-05 25.2 9.4 210 98-327 12-317 (413) 436 KOG0903 consensus 92.4 0.078 2E-06 33.4 2.0 123 181-314 580-728 (847) 437 KOG0665 consensus 92.3 0.18 4.5E-06 30.6 3.7 130 223-363 81-212 (369) 438 pfam02958 DUF227 Domain of unk 91.9 0.49 1.3E-05 27.2 5.6 34 283-316 216-254 (293) 439 COG3281 Ble Uncharacterized pr 91.9 0.22 5.5E-06 29.9 3.8 36 265-307 274-309 (438) 440 KOG4717 consensus 91.4 1.2 3E-05 24.2 10.0 146 124-319 23-176 (864) 441 PRK09188 serine/threonine prot 91.0 1.3 3.3E-05 24.0 7.0 99 205-317 68-167 (365) 442 KOG0671 consensus 91.0 0.62 1.6E-05 26.4 5.3 129 208-348 135-290 (415) 443 pfam12260 PIP49_C Pancreatitis 90.6 1.4 3.6E-05 23.7 7.2 85 226-316 26-133 (205) 444 PRK10271 thiK thiamine kinase; 90.5 1.3 3.3E-05 23.9 6.6 40 277-317 73-112 (188) 445 KOG0690 consensus 89.3 0.67 1.7E-05 26.2 4.4 70 239-311 244-317 (516) 446 cd05163 TRRAP TRansformation/t 88.9 0.29 7.3E-06 29.0 2.3 27 283-309 156-183 (253) 447 KOG0576 consensus 88.9 0.44 1.1E-05 27.6 3.2 212 126-387 22-255 (829) 448 TIGR02457 TreS_Cterm trehalose 88.7 0.77 2E-05 25.7 4.3 42 307-348 296-337 (568) 449 KOG0662 consensus 88.3 0.55 1.4E-05 26.8 3.4 134 125-312 8-151 (292) 450 KOG1152 consensus 88.3 0.59 1.5E-05 26.5 3.5 150 120-310 560-718 (772) 451 KOG0200 consensus 88.0 0.61 1.5E-05 26.5 3.4 52 122-173 299-359 (609) 452 KOG0669 consensus 87.6 0.5 1.3E-05 27.2 2.8 141 126-313 24-175 (376) 453 PRK05250 S-adenosylmethionine 85.9 2.6 6.7E-05 21.5 5.9 80 227-311 159-246 (386) 454 COG2187 Uncharacterized protei 85.9 0.43 1.1E-05 27.6 1.7 111 199-317 123-241 (337) 455 KOG2052 consensus 85.4 2.2 5.7E-05 22.1 5.2 143 125-316 217-370 (513) 456 KOG0580 consensus 85.0 0.58 1.5E-05 26.6 2.0 151 120-321 21-183 (281) 457 KOG0590 consensus 84.4 0.95 2.4E-05 25.0 2.9 64 242-312 400-470 (601) 458 TIGR02172 Fb_sc_TIGR02172 Fibr 83.9 0.77 2E-05 25.7 2.3 159 146-328 23-206 (234) 459 TIGR00938 thrB_alt homoserine 83.7 3.3 8.3E-05 20.8 6.4 76 279-374 189-266 (312) 460 KOG0904 consensus 83.4 0.86 2.2E-05 25.3 2.3 24 286-309 928-951 (1076) 461 KOG4279 consensus 83.3 3.4 8.6E-05 20.7 6.4 71 239-312 648-726 (1226) 462 COG3178 Predicted phosphotrans 83.1 3.4 8.8E-05 20.6 9.3 71 245-322 171-247 (351) 463 KOG1025 consensus 81.6 3.1 7.9E-05 21.0 4.6 203 124-388 701-918 (1177) 464 KOG0604 consensus 81.5 3.5 8.9E-05 20.6 4.9 72 239-313 135-215 (400) 465 PRK10593 hypothetical protein; 81.5 2 5.1E-05 22.5 3.6 128 206-367 55-191 (297) 466 KOG0033 consensus 79.5 4.5 0.00011 19.7 7.8 95 206-313 58-164 (355) 467 PHA00451 protein kinase 78.4 1.2 3.1E-05 24.1 1.7 177 100-306 2-214 (364) 468 PRK02946 aceK bifunctional iso 77.5 3.3 8.4E-05 20.8 3.7 35 276-310 452-486 (580) 469 KOG0606 consensus 76.7 5.3 0.00014 19.2 5.4 201 76-343 14-217 (1205) 470 KOG0614 consensus 76.6 5.4 0.00014 19.1 5.3 88 213-316 483-574 (732) 471 PRK00029 hypothetical protein; 76.3 5.5 0.00014 19.1 7.3 130 264-408 227-378 (487) 472 KOG4278 consensus 74.5 3.9 9.9E-05 20.2 3.4 123 178-313 283-416 (1157) 473 PRK10345 hypothetical protein; 74.4 6 0.00015 18.7 8.9 93 222-314 58-162 (210) 474 TIGR01212 TIGR01212 radical SA 74.3 2.1 5.3E-05 22.3 2.0 168 53-245 95-278 (307) 475 pfam04655 APH_6_hur Aminoglyco 74.3 1.1 2.8E-05 24.5 0.5 33 124-159 7-39 (253) 476 pfam06315 AceK Isocitrate dehy 73.3 4.5 0.00012 19.7 3.5 41 274-314 438-478 (562) 477 KOG1033 consensus 72.0 1.1 2.9E-05 24.3 0.2 74 240-316 333-410 (516) 478 KOG4257 consensus 71.8 6.9 0.00018 18.3 5.4 141 125-315 395-544 (974) 479 cd05124 AFK Actin-Fragmin Kina 70.2 4.5 0.00012 19.7 2.9 148 147-320 23-195 (238) 480 KOG0695 consensus 70.1 7.5 0.00019 18.0 5.4 157 237-411 325-494 (593) 481 PTZ00104 S-adenosylmethionine 69.9 7.5 0.00019 18.0 4.6 138 148-311 95-254 (391) 482 TIGR00421 ubiX_pad polyprenyl 69.6 3.1 7.8E-05 21.0 2.0 56 71-133 11-75 (181) 483 KOG0905 consensus 68.2 8.1 0.00021 17.8 10.5 24 285-308 1200-1223(1639) 484 COG4248 Uncharacterized protei 67.8 8.2 0.00021 17.7 4.5 15 330-344 447-461 (637) 485 cd01085 APP X-Prolyl Aminopept 67.6 7.8 0.0002 17.9 3.7 36 291-327 75-124 (224) 486 cd04237 AAK_NAGS-ABP AAK_NAGS- 66.6 8.5 0.00022 17.6 3.7 91 233-324 64-158 (280) 487 PTZ00303 phosphatidylinositol 66.6 8.7 0.00022 17.5 4.3 32 278-309 1142-1173(1374) 488 KOG0986 consensus 65.1 9.2 0.00024 17.3 6.8 104 206-316 233-341 (591) 489 PRK09566 nirA ferredoxin-nitri 65.0 1.3 3.4E-05 23.8 -0.6 22 73-94 99-125 (513) 490 KOG4720 consensus 65.0 9.3 0.00024 17.3 5.1 114 283-423 250-369 (391) 491 pfam05542 DUF760 Protein of un 64.8 6.1 0.00016 18.7 2.7 27 70-96 9-35 (328) 492 PRK13028 tryptophan synthase s 62.3 8.8 0.00023 17.5 3.1 78 52-141 23-108 (403) 493 PRK12459 S-adenosylmethionine 62.1 10 0.00026 16.9 4.9 80 227-311 158-245 (383) 494 COG1561 Uncharacterized stress 62.1 8.9 0.00023 17.4 3.1 14 313-326 81-94 (290) 495 COG4579 Isocitrate dehydrogena 62.0 3.7 9.4E-05 20.4 1.1 16 70-85 43-58 (578) 496 pfam11517 Nab2 Nuclear abundan 61.8 9.2 0.00023 17.3 3.1 42 83-124 48-94 (107) 497 KOG2464 consensus 60.7 4.7 0.00012 19.6 1.5 20 280-299 156-175 (246) 498 TIGR01186 proV glycine betaine 60.0 9.2 0.00023 17.3 2.9 41 69-109 140-199 (372) 499 COG3570 StrB Streptomycin 6-ki 58.0 12 0.00031 16.4 5.7 53 269-321 149-202 (274) 500 pfam07387 Seadorna_VP7 Seadorn 57.8 6.5 0.00017 18.5 1.8 27 282-308 163-189 (308) No 1 >PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed Probab=100.00 E-value=0 Score=1014.54 Aligned_cols=508 Identities=35% Similarity=0.555 Sum_probs=472.9 Q ss_pred CHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCC Q ss_conf 91489899999999961579865531331267888775320023465556807899999996042899999999710045 Q gi|254780623|r 1 MKEYYELFRIAWILIREGVIVSLPSDRLPPIIVFGKKIASLFVRRNIKKCQRSDRLARAMNRLGPSYVKMGQFLATRPDL 80 (517) Q Consensus 1 ~~~~~R~~~i~~v~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlr~~le~LGptfiKlGQ~lstR~Dl 80 (517) |+++.|+.+|++|++|||+++++....+.+....+.+...+. .......++|+|+|.|||+|||||||+||+||||+|+ T Consensus 1 m~~l~R~~~I~~vl~ryG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~RlR~alEeLGPtfIKlGQ~LStR~Dl 79 (540) T PRK04750 1 MGELLRLYKIIRVFLRYGLDELILSMRLTRPLRLLRRSLFWM-SNRHKDKPRGERLRLALQELGPIFVKFGQMLSTRRDL 79 (540) T ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCC T ss_conf 951079999999999938498987456404688888741354-2244579989999999999786999999999806644 Q ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHH Q ss_conf 98899999998874887899899999875404788999999867-66677888865555021288872368764031046 Q gi|254780623|r 81 IGKKLSEDLALLQDKMDFFPTNTARLSVASALKAPIEELYCEFD-DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVR 159 (517) Q Consensus 81 lp~~~~~eL~~Lqd~vpp~~~~~v~~~ie~elg~~~~~~F~~fd-ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~ 159 (517) +|++||+||++|||+|||+||+++++++|+|||.+++++|++|| +|+|||||||||+|+|+| +|++||||||||||+ T Consensus 80 lP~~~~~eL~~LqD~vpp~~~~~~~~~ie~elG~~~~~~F~~fd~~PiAsASIaQVH~A~L~d--~G~~VaVKVqRP~I~ 157 (540) T PRK04750 80 FPPDIADELALLQDRVPPFDGALARAIIEKALGGPVEEWFDDFDIEPLASASIAQVHTARLKD--NGREVVVKVLRPDIL 157 (540) T ss_pred CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHCCHHEEEEEECC--CCCEEEEEEECCCHH T ss_conf 899999999997379999998999999999869799999770697602211141147889658--981899988788879 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCE Q ss_conf 88777788999875321146854334691799999998878886559999889872024467766430000102217833 Q gi|254780623|r 160 KRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDV 239 (517) Q Consensus 160 ~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~V 239 (517) +.|+.|+++|++++++++++.|.++.+++.++++||++++.+|+||++||+|+++|++||++++.++||+|||+|||++| T Consensus 158 ~~I~~DL~ll~~la~~~~~~~~~~~~~~~~~vv~ef~~~l~~ELDf~~EA~N~~~f~~nf~~~~~v~vP~vy~~~st~rV 237 (540) T PRK04750 158 PVIDADLALMRRLARWVERLLPDGRRLKPREVVAEFEKTLHDELDLMREAANASQLRRNFEDSDLLYVPEVYWDYCSETV 237 (540) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHCCCCE T ss_conf 99988999999999988861940300686999999999999998699999999999997279999897974587457861 Q ss_pred EEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECC----CCEEEEECCHHEECCHH Q ss_conf 53002478632426773320022568999999999998974486617878622898028----95357434031216989 Q gi|254780623|r 240 ITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSK----GYIVAVDMGITGRLSKR 315 (517) Q Consensus 240 LvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~d----g~i~~lDfG~vg~l~~~ 315 (517) |||||++|+|++|.+.+++.|+|++++|++++++|++|+|+|||||||||||||+|++| |++++|||||||+|+++ T Consensus 238 LvME~i~Gi~i~d~~~l~~~g~d~~~lA~~~~~~f~~Qvf~dGFFHADpHPGNi~v~~d~~~~g~~~~lDfGmvG~L~~~ 317 (540) T PRK04750 238 LVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQVFRDGFFHADMHPGNIFVSYDHPENPRYIALDFGIVGSLNKE 317 (540) T ss_pred EEEEEECCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCHHEEECCCCCCCCCEEEEEEEEECCCCHH T ss_conf 25630068655549999755998999999999999633400886606999510364577777874788740132138999 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCH Q ss_conf 99999976699971872789999998412667789368999999852100133433311356899999754527971288 Q gi|254780623|r 316 ERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRAIGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRP 395 (517) Q Consensus 316 ~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~ 395 (517) +|+.+++++.|+.++|+++++++++++|++++++|.+.|+.+++.++++|++.+++++++++++.++++++++|++++|+ T Consensus 318 ~r~~l~~l~~a~~~~D~~~va~~~~~~g~v~~~~~~~~l~~~i~~~~~~~~~~~l~~i~~g~~l~~l~~~~r~~~i~~p~ 397 (540) T PRK04750 318 DKRYLAENFLAFFNRDYRRVAELHVESGWVPPDTRVEELEFAIRAVCEPIFDKPLKEISFGHVLLRLFNTARRFNVEIQP 397 (540) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHCCCCCCH T ss_conf 99999999999994059999999999589998888799999999999986089887581999999999999988963682 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999884998768898889999999999998645968899999999999999999766779999999999861 Q gi|254780623|r 396 ELVMLQKTMVVVEGVARMLNPEFNMWVSSEPIVEEWIRDHLGAKSCVVDFQDGIKTAFRLVQAAPQLSISVEKILKSLVE 475 (517) Q Consensus 396 ~~~ll~r~l~~lEG~~~~LdP~~d~~~~~~p~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~lp~lp~~l~~il~~~~~ 475 (517) ++++++||++++||++++|||+||+|++++||+++|++++++|++..+++.+.+.++.+.+..+| .++.+++++... T Consensus 398 ~l~ll~Kal~~lEG~~r~LdP~~dl~~~a~P~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~lP---~~l~~~L~~~~~ 474 (540) T PRK04750 398 QLVLLQKTLLNVEGLGRQLDPQLDLWKTAKPFLERWMREQVGPRALVRALKEEAPFWAEKLPELP---RLVHDSLRQGKL 474 (540) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH T ss_conf 78999999999998998848999879999999999999867999999999999999999999869---999999984200 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5113666433378999999999999999999999999875 Q gi|254780623|r 476 SSVKDKYLDFPKKESSRVYDFLNKLVLWSIFGALLYIISI 515 (517) Q Consensus 476 g~l~~~~~~~~~~~~~rl~~~~~rl~l~ii~aalii~ssl 515 (517) ++..+....... ..+++.+..|+++++++.++++.++.+ T Consensus 475 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~~~ 513 (540) T PRK04750 475 LQHSVDKLAEQL-RTNRLQQGQSRYLLGVGATLLLAGVLL 513 (540) T ss_pred CCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 041265788878-999999999899999999999999999 No 2 >TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase; InterPro: IPR010232 This entry represents the enzyme (UbiB) which catalyses the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria , . The gene is also known as AarF in certain species. It is believed that the reaction converts 2-polyprenylphenol to 6-hydroxy-2-polyprenylphenol. Members are mainly proteobacteria.; GO: 0006744 ubiquinone biosynthetic process. Probab=100.00 E-value=0 Score=1029.68 Aligned_cols=437 Identities=50% Similarity=0.830 Sum_probs=419.1 Q ss_pred HHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC-CCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC Q ss_conf 898999999999615798655313312678887753200234655-5680789999999604289999999971004598 Q gi|254780623|r 4 YYELFRIAWILIREGVIVSLPSDRLPPIIVFGKKIASLFVRRNIK-KCQRSDRLARAMNRLGPSYVKMGQFLATRPDLIG 82 (517) Q Consensus 4 ~~R~~~i~~v~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~rlr~~le~LGptfiKlGQ~lstR~Dllp 82 (517) ++||.+|++||+|||++..++. ..+.......+....+.+.+.. ..+.++|||.|||+|||||||+||+||||+||+| T Consensus 1 ~~RL~~I~~vl~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~RLr~ALe~LGP~fIKfGQ~LSTR~Dl~p 79 (452) T TIGR01982 1 LKRLIRIIRVLIRYGFLALVES-IGPLSLRLLRRLLLPVSNREARARMSRGERLRLALEELGPTFIKFGQTLSTRADLLP 79 (452) T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCEEEHHCCHHHHHCCCCC T ss_conf 9148999999998423554200-103789988666433331202362334348999998508501303144752203564 Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH------HCCC-CHHHHHHHHHH-HHHHHHHHHHHHHHEECCCCCCEEEEEEE Q ss_conf 8999999988748878998999998754------0478-89999998676-66778888655550212888723687640 Q gi|254780623|r 83 KKLSEDLALLQDKMDFFPTNTARLSVAS------ALKA-PIEELYCEFDD-PIAAASIAQVHPAVVHDINGYRKVAVKII 154 (517) Q Consensus 83 ~~~~~eL~~Lqd~vpp~~~~~v~~~ie~------elg~-~~~~~F~~fde-PlasASiaQVh~A~l~d~~~g~~VaVKV~ 154 (517) +|+++||++|||+|||+|++.++++||+ +||. |.+..|++||| |||||||||||+|+|++|.++++|||||+ T Consensus 80 ~~~a~eL~~LQD~vPpF~~~~~r~~Ie~lrdiyv~LG~~p~~~~F~~F~e~P~AaASIAQVH~A~l~~G~~r~~VaVKVl 159 (452) T TIGR01982 80 AEIAEELSLLQDKVPPFDFKAARKVIEALRDIYVALGREPVEELFAEFDEKPLAAASIAQVHKARLVDGATRKEVAVKVL 159 (452) T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHCCEEEEECCCCCCCEEEEEEE T ss_conf 56999999860326899888999999999999998388804677530378426663043020325222897455789876 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH Q ss_conf 31046887777889998753211468543346917999999988788865599998898720244677664300001022 Q gi|254780623|r 155 RPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR 234 (517) Q Consensus 155 rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~ 234 (517) ||||++.|++|+++|+++|++++++.|.+++++|.++|++|.+++..||||+.||+|++++++||+++++++||+|||+| T Consensus 160 RP~i~~~i~~D~~~L~~~A~~ve~~~~~~~RlrP~evV~~f~~~l~~ELDl~~Eaa~A~~L~~Nf~~d~~~~vP~V~W~~ 239 (452) T TIGR01982 160 RPGIEKKIEADIKLLYRLARIVERLLPDSRRLRPTEVVKEFEKTLRNELDLRREAANASELGENFKNDPGLYVPEVYWDY 239 (452) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 59818999999999999999987425112554603678899999998764999999999999987407870874575585 Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECC----CCEEEEECCHH Q ss_conf 17833530024786324267733200-22568999999999998974486617878622898028----95357434031 Q gi|254780623|r 235 TERDVITMEWIDGVKISDTEKLRACG-HDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSK----GYIVAVDMGIT 309 (517) Q Consensus 235 st~~VLvmE~i~G~~i~d~~~l~~~~-~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~d----g~i~~lDfG~v 309 (517) ||++|||||||||+|++|++.+++.| +|+++||++++.+||+|+|.|||||||||||||||+.| |+|++|||||| T Consensus 240 Ts~~vlTmEwIdGip~~D~~~L~~~G~~D~~~lA~~~~~sF~~Qv~rDGfFHAD~HpGNI~v~~d~~~Ng~i~~~DFGIV 319 (452) T TIGR01982 240 TSERVLTMEWIDGIPLSDIAALDEAGLLDLKALAENLVRSFLNQVLRDGFFHADLHPGNIFVLKDPERNGKIIALDFGIV 319 (452) T ss_pred CCCCCCEEHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC T ss_conf 76532100103552533589996468978889999999999999997158878847566332478776880899853742 Q ss_pred EECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHC Q ss_conf 21698999999976699971872789999998412667789368999999852100133433311356899999754527 Q gi|254780623|r 310 GRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRAIGEPIHGQSSDVISMGKLLTMLFEITELF 389 (517) Q Consensus 310 g~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 389 (517) |+|+++.|+.++++++|++++||+++++.+.++|+++.++|.+.|+++++.+.++|+|.|++++|+|+++.++|+++++| T Consensus 320 G~l~~~~r~~LAE~l~Gf~~rDY~~VA~~H~~aGyvp~~~d~~~f~~a~R~~~EP~~g~Pl~~IS~g~~L~~LF~~t~~f 399 (452) T TIGR01982 320 GRLSEEDRRYLAEILYGFINRDYRRVAEVHFDAGYVPSDTDMAEFEQAIRAIGEPIFGQPLKEISVGKLLAKLFKITRDF 399 (452) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHC T ss_conf 00137889999999999985429999999986258884356999999862001543366677402899999999999870 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHH Q ss_conf 9712888999999999988499876889888999999999999864596889 Q gi|254780623|r 390 DMMTRPELVMLQKTMVVVEGVARMLNPEFNMWVSSEPIVEEWIRDHLGAKSC 441 (517) Q Consensus 390 ~~~~P~~~~ll~r~l~~lEG~~~~LdP~~d~~~~~~p~~~~~l~~~~~p~~~ 441 (517) ++.+||+|+||+|||+|+||+||+|||++|+|++|+||+++|+.++++|+.. T Consensus 400 ~m~~qP~L~LLqKTl~~vEGvgR~LdP~~~~W~~A~P~v~~w~~~~~gp~~~ 451 (452) T TIGR01982 400 NMEVQPQLLLLQKTLLTVEGVGRQLDPDLNLWKVAEPFVKKWIRKRLGPKAK 451 (452) T ss_pred CCCCCCHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHCCCCCCC T ss_conf 7856815899999876452102450888788899899999998732670104 No 3 >COG0661 AarF Predicted unusual protein kinase [General function prediction only] Probab=100.00 E-value=0 Score=892.50 Aligned_cols=463 Identities=41% Similarity=0.682 Sum_probs=428.3 Q ss_pred HHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHH-H-HHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCC Q ss_conf 1489899999999961579865531331267888775-3-2002346555680789999999604289999999971004 Q gi|254780623|r 2 KEYYELFRIAWILIREGVIVSLPSDRLPPIIVFGKKI-A-SLFVRRNIKKCQRSDRLARAMNRLGPSYVKMGQFLATRPD 79 (517) Q Consensus 2 ~~~~R~~~i~~v~~r~g~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~rlr~~le~LGptfiKlGQ~lstR~D 79 (517) ....|+.++.++..++++...++.............. . ...........++++|||.+|++|||||||+||+|||||| T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rL~~~L~~LGptfIK~GQ~LStR~D 84 (517) T COG0661 5 YAVSRLPRIIRVRLRYLLGRLLRLTGRLALLLRLLSWLGKSKLASSEELREKRAERLRLALEELGPTFIKLGQILSTRPD 84 (517) T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHCCC T ss_conf 56564022013354888888888888888777788872232446478887768999999999819820113168760763 Q ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHH Q ss_conf 598899999998874887899899999875404788999999867-6667788886555502128887236876403104 Q gi|254780623|r 80 LIGKKLSEDLALLQDKMDFFPTNTARLSVASALKAPIEELYCEFD-DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGV 158 (517) Q Consensus 80 llp~~~~~eL~~Lqd~vpp~~~~~v~~~ie~elg~~~~~~F~~fd-ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i 158 (517) ++|++|++||++|||+|||+|++++++++++|||.+++++|++|+ +|+|||||||||+|+|++ |++|||||||||| T Consensus 85 l~p~e~~~eL~~LQD~vpp~~~~~~~~iie~eLG~~iee~F~eF~~~PiAsASIaQVH~A~L~s---G~~VAVKVqrPgi 161 (517) T COG0661 85 LVPPEYAEELAKLQDRVPPFPFEEAERIIEEELGRPIEELFSEFEPEPIASASIAQVHRAVLKS---GEEVAVKVQRPGI 161 (517) T ss_pred CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHEEEEECC---CCEEEEEECCCCH T ss_conf 2789999999997378999998999999999949999999987499705441276603478458---9889999448981 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC Q ss_conf 68877778899987532114685433469179999999887888655999988987202446776643000010221783 Q gi|254780623|r 159 RKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD 238 (517) Q Consensus 159 ~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~ 238 (517) ++.|..|+.+|++++++++++.|.++++++.++++||.+.+..|+||++||+|+++|++||++++.|+||+|||+|||++ T Consensus 162 ~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~~EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~ 241 (517) T COG0661 162 RERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYRREAANAERFRENFKDDPDVYVPKVYWEYTTRR 241 (517) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCEEECEEEHHCCCCC T ss_conf 88899999999999999987398553278699999999999999677999999999999708999868062523005785 Q ss_pred EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHH Q ss_conf 35300247863242677332002256899999999999897448661787862289802895357434031216989999 Q gi|254780623|r 239 VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERR 318 (517) Q Consensus 239 VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~ 318 (517) ||||||++|+|++|.+.+++.|.|++.+++.++++|++|+|+|||||||||||||+|+++|+++++||||||++++.+|. T Consensus 242 VLtmE~i~Gi~i~d~~~l~~~g~d~k~ia~~~~~~f~~q~~~dgffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~~~~r~ 321 (517) T COG0661 242 VLTMEWIDGIKISDIAALKSAGIDRKELAELLVRAFLRQLLRDGFFHADPHPGNILVRSDGRIVLLDFGIVGRLDPKFRR 321 (517) T ss_pred EEEEEEECCEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEECCCCEECCCHHHHH T ss_conf 78997158974346877875599999999999999999999659513599950057715896899757530138878999 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHH Q ss_conf 99976699971872789999998412667789368999999852100133433311356899999754527971288899 Q gi|254780623|r 319 FLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRAIGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELV 398 (517) Q Consensus 319 ~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~~~ 398 (517) .+++++.|+.++|++++++.+.++|++++.+|...+..+++.+++++++.++++++++++...++++++++++++|++++ T Consensus 322 ~l~~~~~a~~~rD~~~v~~~~~~~G~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~p~~l~ 401 (517) T COG0661 322 YLAELLLAFLNRDYDRVAELHVELGYVPPDTDRDPLAAAIRAVLEPIYGKPLEEISFGEILDKLFEVARRFPMRLPPELV 401 (517) T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHH T ss_conf 99999999984079999999999479997555689999999998764089955435999999999999864765889999 Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999988499876889888999999999999864596889999999999999999976677999999 Q gi|254780623|r 399 MLQKTMVVVEGVARMLNPEFNMWVSSEPIVEEWIRDHLGAKSCVVDFQDGIKTAFRLVQAAPQLSISVEK 468 (517) Q Consensus 399 ll~r~l~~lEG~~~~LdP~~d~~~~~~p~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~lp~lp~~l~~ 468 (517) +++|+++++||+++.|||++|+|.++.||+.++...+++|+ ....+.+....+......+|++...+.+ T Consensus 402 ll~r~~~~vEg~~~~ldp~~~~~~~a~p~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 470 (517) T COG0661 402 LLQRTLLLVEGVGRQLDPRFNLWAVAQPLLAKWLKKQLSPK-LLRELKDEAVAVLNALPLLPRLLRDLLD 470 (517) T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99988998999987637441179996188899998741399-9999987589999988762888998776 No 4 >KOG1235 consensus Probab=100.00 E-value=0 Score=657.89 Aligned_cols=366 Identities=29% Similarity=0.440 Sum_probs=318.8 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHH Q ss_conf 789999999604289999999971004598899999998874887899899999875404788999999867-6667788 Q gi|254780623|r 53 SDRLARAMNRLGPSYVKMGQFLATRPDLIGKKLSEDLALLQDKMDFFPTNTARLSVASALKAPIEELYCEFD-DPIAAAS 131 (517) Q Consensus 53 ~~rlr~~le~LGptfiKlGQ~lstR~Dllp~~~~~eL~~Lqd~vpp~~~~~v~~~ie~elg~~~~~~F~~fd-ePlasAS 131 (517) +++|+..++.+||||||+||.+|||+|++|+||+++|+.|||++||+||+++.+++|+|||.|++++|++|| +|||||| T Consensus 94 a~~L~e~~~~nGg~yIKlGQ~lst~~dllP~Eyv~~L~~LqD~~Pp~~~ee~~~i~e~ElG~~ie~if~~f~~~piaaAS 173 (538) T KOG1235 94 AERLLELFLRNGGTYIKLGQHLSTRPDLLPKEYVKTLSELQDQAPPFPWEEAFKIFEEELGAPIEDIFSEFDEEPIAAAS 173 (538) T ss_pred HHHHHHHHHHCCCEEEEECHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHCC T ss_conf 99999999970886998220330365437199999999985069999879999999988399989998852854132242 Q ss_pred HHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88655550212888723687640310468877778899987532114685433469179999999887888655999988 Q gi|254780623|r 132 IAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAA 211 (517) Q Consensus 132 iaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n 211 (517) +||||+|+|++ |++|||||||||+++.+..|+.+++.++.+++++.|. +++..+++|++..+.+|+||.+||+| T Consensus 174 laQVhrA~L~~---G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~---~~~~~lvdE~~~~L~~ELDF~~EA~N 247 (538) T KOG1235 174 LAQVHRARLKN---GEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPD---FDLVWLVDEIAKSLPQELDFTKEAKN 247 (538) T ss_pred HHHEEEEEECC---CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHCCHHHHHHH T ss_conf 43467788259---9889999548676778899999999999999986867---72165899998656765366888876 Q ss_pred HHHHHCCCCCCC---CCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCC Q ss_conf 987202446776---64300001022178335300247863242677332002256899999999999897448661787 Q gi|254780623|r 212 FSEMAENTVKDQ---GFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADL 288 (517) Q Consensus 212 ~~~~~~~~~~~~---~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFHaDP 288 (517) +++|+++|++.+ +|+||+|||+|||+|||||||++|++++|++.+++.|++++.++..++++|.+|||.+||||||| T Consensus 248 ae~~~~~f~~~~~~~~V~VP~Vy~~~st~RVLtME~~~G~~i~Dl~~i~~~gi~~~~i~~~l~~~~~~qIf~~GffHaDP 327 (538) T KOG1235 248 AERFRENFKDFSLLTYVLVPKVYWDLSTKRVLTMEYVDGIKINDLDAIDKRGISPHDILNKLVEAYLEQIFKTGFFHADP 327 (538) T ss_pred HHHHHHHHHHCCCCCCEECCEEHHHCCCCEEEEEEECCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 99999998744656602677443323756379998308805788999987499989999999999999998539715799 Q ss_pred CCCEEEEEC----CCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH-- Q ss_conf 862289802----89535743403121698999999976699971872789999998412667789368999999852-- Q gi|254780623|r 289 HPGNLFVDS----KGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRAIG-- 362 (517) Q Consensus 289 HpGNi~v~~----dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i~~~~-- 362 (517) |||||+|++ +++++++|||+++.++...|..++++++|++..|...+......+|..+ +.+...|..++...- T Consensus 328 HPGNilv~~~~~~~~~ivllDhGl~~~is~~~r~~~~~~~~a~~~~d~~~~~~~~~~~g~~~-d~~~~~fa~~l~~~~~~ 406 (538) T KOG1235 328 HPGNILVRPNPEGDEEIVLLDHGLYAVISHKTRKDYAELWLALVFEDEKAMQALAEQLGLGL-DDLYPLFATALTGRPWD 406 (538) T ss_pred CCCCEEEECCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC-CHHHHHHHHHHHCCCHH T ss_conf 98737871278998548998344513466777999999999986052789999999754363-01234567887187255 Q ss_pred -------HHCCCCCH-----HHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC----HHHHHHH Q ss_conf -------10013343-----3311356899999754527971288899999999998849987688988----8999999 Q gi|254780623|r 363 -------EPIHGQSS-----DVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVARMLNPEFN----MWVSSEP 426 (517) Q Consensus 363 -------~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~P~~~~ll~r~l~~lEG~~~~LdP~~d----~~~~~~p 426 (517) ..+..... ........+..+.+...+ +|.++.++.|+..++.++-..+.-..+ +...++. T Consensus 407 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~----~p~~i~li~k~~~l~r~~~~~l~~~~~~~~~f~~~~~~ 482 (538) T KOG1235 407 SVIGAGITKYLKGLEEDADENQKIASAKFPGISQLLRR----MPREILLILKTNDLLRGLSSNLGIPSSLERSFLEMARL 482 (538) T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHH T ss_conf 41563213330013100016778899875689999874----64766331132788886788746665521689999898 Q ss_pred HHH Q ss_conf 999 Q gi|254780623|r 427 IVE 429 (517) Q Consensus 427 ~~~ 429 (517) .++ T Consensus 483 ~~~ 485 (538) T KOG1235 483 CLR 485 (538) T ss_pred HHH T ss_conf 888 No 5 >KOG1236 consensus Probab=100.00 E-value=0 Score=527.85 Aligned_cols=376 Identities=22% Similarity=0.360 Sum_probs=348.6 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC-CHHHHHHHHH-HHHHHH Q ss_conf 78999999960428999999997100459889999999887488789989999987540478-8999999867-666778 Q gi|254780623|r 53 SDRLARAMNRLGPSYVKMGQFLATRPDLIGKKLSEDLALLQDKMDFFPTNTARLSVASALKA-PIEELYCEFD-DPIAAA 130 (517) Q Consensus 53 ~~rlr~~le~LGptfiKlGQ~lstR~Dllp~~~~~eL~~Lqd~vpp~~~~~v~~~ie~elg~-~~~~~F~~fd-ePlasA 130 (517) .+-|+.++|.-||||||||||.|||+|+||+++|.+|++|+.+|+|+||...++.+++++|. .++++|.+|+ +|+||| T Consensus 121 ~~~L~kaLE~aGPtFIKLGQWAsTR~DlFs~afC~qLSKLHs~vt~Hs~a~T~k~l~qa~~~~~~~eiF~efn~~PIGsG 200 (565) T KOG1236 121 LRLLLKALETAGPTFIKLGQWASTRRDLFSKAFCAQLSKLHSNVTPHSFAFTKKKLRQAFGVKKIEEIFSEFNREPIGSG 200 (565) T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCC T ss_conf 99999999752986687142002264316799999988875058987317789999999774748999873487655654 Q ss_pred HHHHHHHHHEEC-------------CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 888655550212-------------8887236876403104688777788999875321146854334691799999998 Q gi|254780623|r 131 SIAQVHPAVVHD-------------INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ 197 (517) Q Consensus 131 SiaQVh~A~l~d-------------~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 197 (517) ||||||+|+++. +.+-++|||||.+|++++.|+.|+.+|...|+..+ ++|+..+++++..+++|.. T Consensus 201 ~IAQVY~atl~~a~lekd~~~~~~~~~~tq~~AiKv~Hp~V~~~ir~Dl~Il~f~Akl~~-~vP~l~wL~l~~~vkqF~v 279 (565) T KOG1236 201 CIAQVYRATLKTAYLEKDSGKEYVQKLGTQSCAIKVLHPNVEKQIRLDLGILGFGAKLIN-NVPDLSWLSLPLEVKQFSV 279 (565) T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCHHHHHHH T ss_conf 133455555418876313440231477653155411075678889999999852144555-4676311167205889999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCC-CHHHHHHHHHHHHHH Q ss_conf 8788865599998898720244677664300001022178335300247863242677332002-256899999999999 Q gi|254780623|r 198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGH-DLERLSVTLVQSFLL 276 (517) Q Consensus 198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~-d~~~la~~l~~~~~~ 276 (517) .+..++|+++||.|+.+|..||+++.+|.+|++|..++|+.||+.+|++|.++...-.-+.... -.+++|..+++++++ T Consensus 280 ~ln~QvdL~~EA~hL~rF~~NF~~s~~V~fP~P~~~~~~~~vl~E~~~~Gl~v~~~v~~~~~pe~l~kkva~lg~~Allk 359 (565) T KOG1236 280 GLNAQVDLRQEALHLPRFTNNFSGSKKVLFPKPIAPLHTDLVLVETYERGLSVLRFVKWKSQPEALVKKVAKLGVNALLK 359 (565) T ss_pred HHHHHCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH T ss_conf 98741006554431588987513535524776532134443122102455207765422227699999999877999999 Q ss_pred HHHHCCEECCCCCCCEEEEEC--C-----------------------------------------CCEEEEECCHHEECC Q ss_conf 897448661787862289802--8-----------------------------------------953574340312169 Q gi|254780623|r 277 HTLRDGFFHADLHPGNLFVDS--K-----------------------------------------GYIVAVDMGITGRLS 313 (517) Q Consensus 277 qi~~~GfFHaDPHpGNi~v~~--d-----------------------------------------g~i~~lDfG~vg~l~ 313 (517) |++.|+|.|||.||||++|.. . +++||+|-|++..++ T Consensus 360 Ml~vDNFvHaDlHPGNVlirf~~t~~~~~~~~~~e~~~~i~~~L~~~~~e~~d~~~~~~~~~~~~P~lvflDtGiv~kLs 439 (565) T KOG1236 360 MLIVDNFVHADLHPGNVLIRFNKTEDNLRGVHKAEKASAIKRGLEWFRSEVRDARFTDSPDLEYEPTLVFLDTGIVTKLS 439 (565) T ss_pred HHHHHCCEECCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHCCC T ss_conf 99860001124577747998547875433332203566776435654556653332126534688749995230544047 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC-CCCHHHCCHHHHHHHHHHHHHHCCCC Q ss_conf 89999999766999718727899999984126677893689999998521001-33433311356899999754527971 Q gi|254780623|r 314 KRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRAIGEPIH-GQSSDVISMGKLLTMLFEITELFDMM 392 (517) Q Consensus 314 ~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~ 392 (517) +..+.++..+|.|+++.|++.+.+.+++.+-.....|.+.|...++.++.... ..+++..+++.++.+++.+++.|+++ T Consensus 440 ~qn~~N~l~lF~av~~~~Gy~ag~lml~~Sr~q~~~d~e~F~~kvEklv~~~~st~sl~tl~i~~ll~em~tmvreH~V~ 519 (565) T KOG1236 440 HQNQMNLLSLFRAVARFDGYDAGELMLERSRQQQCIDPERFARKVEKLVLKARSTKSLRTLNIGDLLSEMFTMVREHHVR 519 (565) T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHEE T ss_conf 14188799999999875152188999764501048988999999999999864204467476899999999999875242 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 2888999999999988499876889888999999999 Q gi|254780623|r 393 TRPELVMLQKTMVVVEGVARMLNPEFNMWVSSEPIVE 429 (517) Q Consensus 393 ~P~~~~ll~r~l~~lEG~~~~LdP~~d~~~~~~p~~~ 429 (517) +.++|+.++-+.+++||.+|+|||++|++....+|+. T Consensus 520 ids~f~tvvlsilvlEG~gRqLdP~lDl~~~~~~~l~ 556 (565) T KOG1236 520 IDSNFTTVVLSILVLEGFGRQLDPDLDLFQLRTFLLN 556 (565) T ss_pred ECCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH T ss_conf 0243377889999886224446998216664788999 No 6 >KOG1234 consensus Probab=100.00 E-value=3.5e-40 Score=330.61 Aligned_cols=336 Identities=22% Similarity=0.276 Sum_probs=295.6 Q ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHHHHHHHHEECCCCCCEEEEEEECCH Q ss_conf 45988999999988748878998999998754047889999998676-66778888655550212888723687640310 Q gi|254780623|r 79 DLIGKKLSEDLALLQDKMDFFPTNTARLSVASALKAPIEELYCEFDD-PIAAASIAQVHPAVVHDINGYRKVAVKIIRPG 157 (517) Q Consensus 79 Dllp~~~~~eL~~Lqd~vpp~~~~~v~~~ie~elg~~~~~~F~~fde-PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~ 157 (517) -++|+...+-+++.++.+-.+|..+..++...++|.+|.+.|++||+ |.|+|||||||+|++++ |.+||||||+|| T Consensus 8 ~ll~p~l~qi~erVrqsAd~MP~~Ql~~vm~~~lG~nW~~Kf~~fd~~P~AaASIGQVHrArl~~---g~eVavKiQYPG 84 (363) T KOG1234 8 SLLPPTLGQILERVRQSADFMPPKQLEPVMWGELGGNWAQKFSSFDDGPFAAASIGQVHRARLAD---GPEVAVKIQYPG 84 (363) T ss_pred CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC---CCEEEEECCCCC T ss_conf 70587799999985376566985664478763224558998876424763124688899998537---980021047786 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC Q ss_conf 46887777889998753211468543346917999999988788865599998898720244677664300001022178 Q gi|254780623|r 158 VRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER 237 (517) Q Consensus 158 i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~ 237 (517) +.+.|+.|+..+.++++.- ...|. .+-+...++-.++.+..|+||.+||+.+.+|+..+++++.++||.|++++||. T Consensus 85 va~sI~SD~~nl~~lLn~s-~llPk--GLFLd~~i~~ArkEL~~ECDYqrEA~~~~kFr~LLs~~p~f~VP~Vv~Elct~ 161 (363) T KOG1234 85 VARSIDSDANNLSRLLNFS-GLLPK--GLFLDVLIEVARKELKWECDYQREAASALKFRPLLSDDPNFYVPRVVDELCTV 161 (363) T ss_pred HHHHCCCCHHHHHHHHHHC-CCCCC--CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC T ss_conf 1654148689999998621-64643--21378999999986322342477777776468874689876513778765153 Q ss_pred CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEEC-CCCEEEEECCHHEECCHHH Q ss_conf 335300247863242677332002256899999999999897448661787862289802-8953574340312169899 Q gi|254780623|r 238 DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDS-KGYIVAVDMGITGRLSKRE 316 (517) Q Consensus 238 ~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~-dg~i~~lDfG~vg~l~~~~ 316 (517) +||+||++.|++|...+.+... .|+.++..+++.+++.+|+..|...||..+|++++. ..+|.+||||.....++.. T Consensus 162 rvlt~el~~G~pid~~~~~sQ~--~rn~i~~~~l~lcLrEif~f~fMQTDPNWsNFly~~~tk~i~LlDFGAsr~y~~~F 239 (363) T KOG1234 162 RVLTLELGQGLPIDKTAKLSQE--TRNYIGYKLLELCLREIFEFRFMQTDPNWSNFLYNGRTKKIELLDFGASREYGEKF 239 (363) T ss_pred HHHHHHHHCCCCCHHHHCCCHH--HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCEEEEEECCCCCCCCHHH T ss_conf 1433444047201222110488--99999999999999999887543379877875117776557887436553126789 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHHCCCC---CHHHCCHHHHHHHHHHHHHHCC Q ss_conf 9999976699971872789999998412667789---368999999852100133---4333113568999997545279 Q gi|254780623|r 317 RRFLAEILYGFISRDYQRVADVHFEAGYVPRHHN---RFSFAQAIRAIGEPIHGQ---SSDVISMGKLLTMLFEITELFD 390 (517) Q Consensus 317 r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d---~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~ 390 (517) -..+.+++.|.+++|-+++.+.-.++|+.+..-. .+.-...+-.+-+++.+. ++++-++..-+..+.-++-+|. T Consensus 240 ~d~Y~~~~~aaa~~dr~~v~e~S~~lgfLtg~Es~~m~DAHv~sv~ilgepfa~~~pydF~~q~~t~ri~~lipvmL~hR 319 (363) T KOG1234 240 IDKYIRLLKAAADRDREGVIEMSRELGFLTGYESKVMEDAHVESVMILGEPFASDGPYDFGDQTVTDRIQNLIPVMLRHR 319 (363) T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC T ss_conf 99999999999712668899998885651351387788776667641045335789967676689999986527998656 Q ss_pred CCCCH-HHHHHHHHHHHHHHHHHHHCCCCCHHH Q ss_conf 71288-899999999998849987688988899 Q gi|254780623|r 391 MMTRP-ELVMLQKTMVVVEGVARMLNPEFNMWV 422 (517) Q Consensus 391 ~~~P~-~~~ll~r~l~~lEG~~~~LdP~~d~~~ 422 (517) +.-|| |..-+-|.++-.-=.|.+|...+.--+ T Consensus 320 L~pPPeEtYsLHRklsG~fL~cakl~A~v~C~~ 352 (363) T KOG1234 320 LCPPPEETYSLHRKLSGAFLLCAKLGATVPCRD 352 (363) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH T ss_conf 789948889999984238999998668770799 No 7 >pfam03109 ABC1 ABC1 family. This family includes ABC1 from yeast and AarF from E. coli. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex and E. coli AarF is required for ubiquinone production. It has been suggested that members of the ABC1 family are novel chaperonins. These proteins are unrelated to the ABC transporter proteins. Probab=99.96 E-value=4.3e-30 Score=252.42 Aligned_cols=116 Identities=41% Similarity=0.606 Sum_probs=111.3 Q ss_pred HHCCCCHHHHHHHHH-HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH Q ss_conf 404788999999867-6667788886555502128887236876403104688777788999875321146854334691 Q gi|254780623|r 110 SALKAPIEELYCEFD-DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCF 188 (517) Q Consensus 110 ~elg~~~~~~F~~fd-ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~ 188 (517) +|||.+|+++|++|| +|+|||||||||+|+|+| |++||||||||||++.|..|+.++++++++++++.+ .+++ T Consensus 1 eelG~~~~~~F~~fd~~PiasASIaQVh~a~l~~---G~~VaVKVqrP~i~~~i~~Dl~~l~~~~~~~~~~~~---~~~~ 74 (117) T pfam03109 1 EELGAPVEEVFAEFDEEPIAAASIAQVHRAVLKD---GEEVAVKVQRPGVKKRIRSDLKLLKFLAKILKKFFP---GFDL 74 (117) T ss_pred CCCCCCHHHHHHHCCCCHHHHHHHHHEEEEEECC---CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCC---CCCH T ss_conf 9789889999885796436555045746799748---987999887707899999999999999999999778---7999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCC Q ss_conf 7999999988788865599998898720244677664300001 Q gi|254780623|r 189 SAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKID 231 (517) Q Consensus 189 ~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy 231 (517) .++++||...+.+|+||++||+|+++|+++|++++.++||+|| T Consensus 75 ~~~~~e~~~~l~~ElD~~~Ea~n~~~f~~~~~~~~~v~iP~vY 117 (117) T pfam03109 75 DWLVDEFRKSLPQELDFLREAANAEKFRENFADLPWVYVPKVY 117 (117) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCC T ss_conf 9999999999999977999999999999981899798829839 No 8 >pfam01163 RIO1 RIO1 family. This is a family of atypical serine kinases which are found in archaea, bacteria and eukaryotes. Activity of Rio1 is vital in Saccharomyces cerevisiae for the processing of ribosomal RNA, as well as for proper cell cycle progression and chromosome maintenance. The structure of RIO1 has been determined. Probab=99.22 E-value=2.7e-10 Score=98.95 Aligned_cols=178 Identities=23% Similarity=0.283 Sum_probs=120.4 Q ss_pred HHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 55550212888723687640310468877778899987532114685433469179999999887888655999988987 Q gi|254780623|r 135 VHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSE 214 (517) Q Consensus 135 Vh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~ 214 (517) ||.|.-.+ |++||||+-|-|.. +++-++.-.....++. . ...++..++...+ ..|-+|+.+ T Consensus 2 Vy~~~~~~---g~~vavKi~r~~~~-----~Fk~~~~y~~~~~r~~-~-~~~~~~~l~~~wa---------~kEf~nL~r 62 (186) T pfam01163 2 VYHAYSED---GKKVAVKIYRTGTT-----SFKKRKRYRDGDFRFR-D-SKTSWRYLVRLWA---------EKEFRNLKR 62 (186) T ss_pred EEEEECCC---CCEEEEEEEECCCH-----HHCCHHHHCCCCCCCC-C-CCCCHHHHHHHHH---------HHHHHHHHH T ss_conf 69998899---99999999864840-----0161767437764335-7-8889889999999---------999999999 Q ss_pred HHCCCCCCCCCCCHHCCCHHCCCCEEEEECC--CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCE Q ss_conf 2024467766430000102217833530024--78632426773320022568999999999998974486617878622 Q gi|254780623|r 215 MAENTVKDQGFRVPKIDWNRTERDVITMEWI--DGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGN 292 (517) Q Consensus 215 ~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i--~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGN 292 (517) +.+ .++.||+++ .+.++||||||| +|.+...+...... .+...+...+++..-...-..|+.|||.-+=| T Consensus 63 l~~-----~Gv~VP~Pi--~~~r~vlvMe~Ig~~g~pap~Lkd~~~~-~~~~~~~~~ii~~~~~~y~~~glVHgDLSEyN 134 (186) T pfam01163 63 LYE-----AGVPVPKPI--AVNRHVLVMEFIGDDGVPAPRLKDVELE-EEAEEIYDEIIREMRRLYQEAGLVHGDLSEYN 134 (186) T ss_pred HHH-----CCCCCCCEE--EEECCEEEEEEECCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHCCCEECCCHHHH T ss_conf 998-----499999858--9629899999856899335501007864-53999999999999999996693213620655 Q ss_pred EEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC Q ss_conf 8980289535743403121698999999976699971872789999998412667 Q gi|254780623|r 293 LFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPR 347 (517) Q Consensus 293 i~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~ 347 (517) |++.+ +++++||||..-..+-.. -..+..+|...+..-+...|.... T Consensus 135 IL~~~-~~~~iID~~QaV~~~hp~-------A~~~L~RDi~nI~~fF~k~gv~~~ 181 (186) T pfam01163 135 VLVDD-DKPVIIDVPQAVETDHPN-------ALEFLERDVENIINFFRRKGVDVV 181 (186) T ss_pred EEEEC-CCEEEEECCCCCCCCCCC-------HHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 06438-967999567522589978-------899999999999999987399978 No 9 >cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom Probab=99.19 E-value=5.1e-11 Score=104.55 Aligned_cols=161 Identities=24% Similarity=0.302 Sum_probs=112.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 99867666778888655550212888723687640310468877778899987532114685433469179999999887 Q gi|254780623|r 120 YCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT 199 (517) Q Consensus 120 F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 199 (517) ++.+.-||++|==|-||.|.-.+ |.+||||+-|-+... ++.++.- - .+....+..++...... T Consensus 16 i~~v~~~I~tGKEa~Vy~a~~~~---g~~~avKi~r~~~~s-----Fk~~k~~---r-~y~~~~~~~~~~~~~r~----- 78 (198) T cd05144 16 VESLGNQIGVGKESDVYLALDPD---GNPVALKFHRLGRTS-----FRKVKRK---R-DYLGDRKHASWLYLSRL----- 78 (198) T ss_pred CHHHCCEEECCCCCEEEEEECCC---CCEEEEEEEECCCCC-----EEECCCE---E-HHHCCCCCCCHHHHHHH----- T ss_conf 75409756226261289999899---989999999958530-----4131210---0-22125553128999999----- Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 88865599998898720244677664300001022178335300247863242677332002256899999999999897 Q gi|254780623|r 200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL 279 (517) Q Consensus 200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~ 279 (517) -=+.|-+|+.++.+ .+|.||+|+ ...++|||||||+|.++.++..++ ++..+-+.+++..-++ + T Consensus 79 ----~A~kE~~nL~rl~~-----~Gv~VP~Pi--~~~~~vlvMefI~g~~l~~~~~~~----~~~~~y~~ii~~~~~l-~ 142 (198) T cd05144 79 ----AAQKEFAALKALYE-----EGFPVPKPI--DWNRHAVVMEYIDGVELYRVRVLE----DPEEVLDEILEEIVKA-Y 142 (198) T ss_pred ----HHHHHHHHHHHHHH-----CCCCCCCEE--EECCCEEEEEECCCCCCCCCCCCH----HHHHHHHHHHHHHHHH-H T ss_conf ----99999999999998-----499999858--851898999733781131154415----1999999999999999-8 Q ss_pred HCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf 4486617878622898028953574340312169 Q gi|254780623|r 280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) ..|..|||.-+=||++..+|++++||||..-..+ T Consensus 143 ~~glVHgDLSEyNIL~~~~~~~~iID~~QaV~~~ 176 (198) T cd05144 143 KHGIIHGDLSEFNILVDDDEKIYIIDWPQMVSTD 176 (198) T ss_pred HCCCCCCCCCHHHEEECCCCCEEEEECCCCCCCC T ss_conf 6694325743665255479989999666501578 No 10 >cd05119 RIO RIO kinase family, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct Probab=99.17 E-value=1.6e-10 Score=100.67 Aligned_cols=156 Identities=26% Similarity=0.314 Sum_probs=108.5 Q ss_pred HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 6677888865555021288872368764031046887777889998753211-468543346917999999988788865 Q gi|254780623|r 126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQE-KLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~-~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) ||++|==|-||.|.-.+ |.+||||+-|-+... .+-.+. ..+ .........++..++...+ T Consensus 4 ~I~~GKEa~Vy~a~~~~---g~~~avKi~r~~~~~-----Fk~~~~---y~~~d~~~~~~~~~~~~~~~~wA-------- 64 (187) T cd05119 4 PIGTGKEADVYLALDGD---GEPVAVKIYRTGRTS-----FKKRKR---YRTGDYRFGRKKSNWRYLSRLWA-------- 64 (187) T ss_pred CCCCCCCCEEEEEECCC---CCEEEEEEEECCCCC-----CCCHHH---HCCCHHHHCCCCCCHHHHHHHHH-------- T ss_conf 75125571189999899---999999997667343-----152777---31320431578889999999999-------- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCC-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 5999988987202446776643000010221783353002478-----63242677332002256899999999999897 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDG-----VKISDTEKLRACGHDLERLSVTLVQSFLLHTL 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G-----~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~ 279 (517) ..|-+|+.++.+ .++.||+++ ...++|||||||.| .++.|+... .++..+-..+++..-++.- T Consensus 65 -~kEf~~L~rl~~-----~Gv~VP~Pi--~~~~~vlvMe~Ig~~~~~ap~L~~~~~~----~~~~~~~~~il~~~~~~~~ 132 (187) T cd05119 65 -EKEFRNLKRLYE-----AGVPVPKPI--DLNRHVLVMEFIGGDGIPAPRLKDVRLL----EDPEELYDQILELMRKLYR 132 (187) T ss_pred -HHHHHHHHHHHH-----CCCCCCCEE--EEECCEEEEEEECCCCCCCCCHHHCCCC----HHHHHHHHHHHHHHHHHHH T ss_conf -999999999998-----599998079--9709879999816889778465338752----5399999999999999999 Q ss_pred HCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf 4486617878622898028953574340312169 Q gi|254780623|r 280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) +.|..|||..+-||++. ++++++||||.+-..+ T Consensus 133 ~~glVHgDLSeyNilv~-~~~~~iID~pQaV~~~ 165 (187) T cd05119 133 EAGLVHGDLSEYNILVD-DGKVYIIDVPQAVEID 165 (187) T ss_pred HCCCCCCCCCHHHEEEE-CCEEEEEECCCEECCC T ss_conf 74931036555545898-9908999557210489 No 11 >smart00090 RIO RIO-like kinase. Probab=99.15 E-value=5.2e-10 Score=96.74 Aligned_cols=198 Identities=22% Similarity=0.286 Sum_probs=127.2 Q ss_pred HHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCHHHHHHHHHHH Q ss_conf 986766677888865555021288872368764031046887777889998753211--468543346917999999988 Q gi|254780623|r 121 CEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQE--KLLPSMRRLCFSAVVRALEQV 198 (517) Q Consensus 121 ~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~--~~~~~~~~~~~~~~~~e~~~~ 198 (517) +.+..||++|==|-||.|...|++ |++||||+-|-+.. +++.++ +..+ ..+. ....++..++...+ T Consensus 30 ~~l~~~I~~GKEa~Vy~a~~~~~~-g~~vavKi~r~~~~-----~Fk~~~---~y~~gd~Rf~-~~~~~~~~~~~~wA-- 97 (237) T smart00090 30 SAIGGCISTGKEANVYHALDFDGS-GKERAVKIYRTGTL-----EFKRRD---RYVDGDFRFK-YRKINPRKLVRLWA-- 97 (237) T ss_pred HHHCCEEECCCCCEEEEEEEECCC-CCEEEEEEEECCCC-----CCCCHH---HHCCCCCCCC-CCCCCHHHHHHHHH-- T ss_conf 553975402417037999844799-98899999774752-----305376---6336541025-68889889999999-- Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCC---CHHHHHHHHHHHHH Q ss_conf 788865599998898720244677664300001022178335300247863242677332002---25689999999999 Q gi|254780623|r 199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGH---DLERLSVTLVQSFL 275 (517) Q Consensus 199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~---d~~~la~~l~~~~~ 275 (517) ..|-+|+.++.+ ..+.||+|+ ...++|||||||.|.-+.. ..++.... ++..+-..+++.. T Consensus 98 -------~kEf~nL~rl~~-----aGv~VP~Pi--~~~~nvlvMefIg~~~~pa-p~L~d~~~~~~~~~~~~~~il~~~- 161 (237) T smart00090 98 -------EKEFRNLQRLYE-----AGVPVPKPI--AWRRNVLVMEFIGGDGLPA-PRLKDVEPEEEEEFELYDDILEEM- 161 (237) T ss_pred -------HHHHHHHHHHHH-----CCCCCCCEE--EEECCEEEEEEECCCCCCC-CCHHCCCCCHHHHHHHHHHHHHHH- T ss_conf -------999999999998-----599999848--9648989999746889745-432116888577999999999999- Q ss_pred HHHHHCC-EECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHH Q ss_conf 9897448-661787862289802895357434031216989999999766999718727899999984126677893689 Q gi|254780623|r 276 LHTLRDG-FFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSF 354 (517) Q Consensus 276 ~qi~~~G-fFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~ 354 (517) +.++..| ..|||.-+=||++. ++++++||||..-..+... -.-+..+|...+..-+..-|.... |..++ T Consensus 162 ~~~y~~g~lVHgDLSEyNIL~~-~~~~~iID~~QaV~~~hp~-------A~~~L~RDi~nI~~fF~k~g~~~~--~~~e~ 231 (237) T smart00090 162 RKLYKEGELVHGDLSEYNILVH-DGKVVIIDVSQSVELDHPM-------ALEFLERDIRNIIRFFRRKGVDEL--DEEEL 231 (237) T ss_pred HHHHHHCCEEECCHHHHHHEEE-CCCEEEEECCCCCCCCCCC-------HHHHHHHHHHHHHHHHHHCCCCCC--CHHHH T ss_conf 9999827952036046551420-8967999467523689988-------899999999999999987399979--99999 Q ss_pred HH Q ss_conf 99 Q gi|254780623|r 355 AQ 356 (517) Q Consensus 355 ~~ 356 (517) .. T Consensus 232 ~~ 233 (237) T smart00090 232 FE 233 (237) T ss_pred HH T ss_conf 87 No 12 >cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro Probab=99.11 E-value=6.7e-10 Score=95.89 Aligned_cols=161 Identities=22% Similarity=0.233 Sum_probs=107.5 Q ss_pred HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHC--CCCCC-CCCCCHHHHHHHHHHHHHHH Q ss_conf 6677888865555021288872368764031046887777889998753211--46854-33469179999999887888 Q gi|254780623|r 126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQE--KLLPS-MRRLCFSAVVRALEQVTKME 202 (517) Q Consensus 126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~--~~~~~-~~~~~~~~~~~e~~~~l~~E 202 (517) ||++|==|-||.|.-.+ |.+||||+-|.+. ..++. . .+.++ ..... ....+...++... T Consensus 4 ~I~~GKEs~Vy~a~~~~---g~~~alKi~r~~~-~sFk~----~---~~Y~~gd~r~~~~~~~~~~r~~~~~w------- 65 (190) T cd05145 4 CISTGKEANVYHARTGD---GEELAVKIYKTST-LSFKD----R---DKYIEGDPRFRSRYSKSNPRKLVFAW------- 65 (190) T ss_pred CCCCCCCCEEEEEECCC---CCEEEEEEEECCC-CCCCC----H---HHHCCCCCEEECCCCCCCHHHHHHHH------- T ss_conf 61035150289999899---9889999977264-33314----4---45105772240564766988999999------- Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECC--CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 6559999889872024467766430000102217833530024--78632426773320022568999999999998974 Q gi|254780623|r 203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWI--DGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLR 280 (517) Q Consensus 203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i--~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~ 280 (517) =..|-+|+.++.+ .++.||+++ ...+++|||||| +|.+.-.+...+....++..+-+.+++...++.-. T Consensus 66 --A~kEf~~L~~l~~-----~Gv~VP~Pi--~~~rhvlvMefIg~~g~pap~L~d~~~~~~~~~~~~~~il~~~~~l~~~ 136 (190) T cd05145 66 --AEKEFRNLKRLYE-----AGVPVPEPI--LLKKNVLVMEFIGDDGSPAPRLKDVPLEEEEAEELYEQVVEQMRRLYQE 136 (190) T ss_pred --HHHHHHHHHHHHH-----CCCCCCCEE--EECCCEEEEEEECCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf --9999999999998-----599999568--8629899999865898424303205677350999999999999999997 Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 4866178786228980289535743403121698 Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) .|+.|||.-+=||++. ++++++||||.+-..+- T Consensus 137 ~glVHgDLSEyNILv~-~~~~~iID~pQaV~~~h 169 (190) T cd05145 137 AGLVHGDLSEYNILYH-DGKPYIIDVSQAVELDH 169 (190) T ss_pred CCEEECCCCHHHEEEE-CCCEEEEECCCCCCCCC T ss_conf 4921036415533897-89479995576125789 No 13 >cd05038 PTKc_Jak_rpt2 Catalytic (Repeat 2) Domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut Probab=99.08 E-value=5.8e-09 Score=88.62 Aligned_cols=142 Identities=18% Similarity=0.214 Sum_probs=91.3 Q ss_pred HHHHHHHHHHHHHHHEE--CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 66677888865555021--2888723687640310468877778899987532114685433469179999999887888 Q gi|254780623|r 125 DPIAAASIAQVHPAVVH--DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME 202 (517) Q Consensus 125 ePlasASiaQVh~A~l~--d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E 202 (517) ++|++||-|.||+|+++ ++.+|+.||||+.++...+ ... T Consensus 10 ~~IG~G~fG~Vy~~~~~~~~~~~~~~VAvK~i~~~~~~-----------------------------~~~---------- 50 (279) T cd05038 10 KQLGEGHFGTVYLGTYDPPDDNTGEIVAVKKLNTSGVE-----------------------------AHR---------- 50 (279) T ss_pred EEEECCCCEEEEEEEEECCCCCCCEEEEEEEECCCCCH-----------------------------HHH---------- T ss_conf 89703748099999995785877839999998845597-----------------------------899---------- Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC-----CCEEEEECCCCCCCCHHHHHHHHCCCHH---HHHHHHHHHH Q ss_conf 6559999889872024467766430000102217-----8335300247863242677332002256---8999999999 Q gi|254780623|r 203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE-----RDVITMEWIDGVKISDTEKLRACGHDLE---RLSVTLVQSF 274 (517) Q Consensus 203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st-----~~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~l~~~~ 274 (517) -+|.+|++.+..++. |. |-+.|. +|. .-.+||||++|-.+.+.-.-.....+.. .++..++.+ T Consensus 51 ~~f~~Ei~~l~~l~H-----pn--Iv~l~g-~~~~~~~~~~~iV~Ey~~~GsL~~~l~~~~~~~~~~~~~~i~~qia~g- 121 (279) T cd05038 51 QDFEREIEIMRTLDH-----EN--IVKYKG-VSEEPGGRSLSLIMEYLPSGSLRDYLRRHRDQLNLKRLLLFALQIAKG- 121 (279) T ss_pred HHHHHHHHHHHHCCC-----CC--CCCEEE-EEECCCCCEEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH- T ss_conf 999999999986799-----89--761889-996289987999999179985899986158999999999999999999- Q ss_pred HHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 9989744866178786228980289535743403121698 Q gi|254780623|r 275 LLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 275 ~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) +.-+-..|+.|.|.-|.||+++.++.+-+-|||+...++. T Consensus 122 L~yLH~~~iiHrDlK~~NILl~~~~~~Ki~DFGls~~~~~ 161 (279) T cd05038 122 MDYLGSKRLIHRDLAARNILVDSEDLVKISDFGLAKVLPE 161 (279) T ss_pred HHHHHHCCEEECCCCCCCEEECCCCEEEEECCCCCCCCCC T ss_conf 9988758976552562107788999099934745326578 No 14 >COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning] Probab=99.08 E-value=4.3e-09 Score=89.62 Aligned_cols=196 Identities=22% Similarity=0.234 Sum_probs=131.9 Q ss_pred HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 66778888655550212888723687640310468877778899987532114685433469179999999887888655 Q gi|254780623|r 126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL 205 (517) Q Consensus 126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~ 205 (517) |+.++-=|-||+|.-.+ |+.|||||.|....+--. +.... .-+..+...+. +...++..+. T Consensus 55 ~istGKEA~Vy~a~~~~---~~~~avKiyr~~t~~fk~-----~~~Yi-~gd~Rf~~~~~-~rr~lv~~W~--------- 115 (268) T COG1718 55 CISTGKEANVYLAETGD---GRYVAVKIYRTSTSEFKR-----IRRYI-QGDPRFRNSRS-NRRKLVFAWA--------- 115 (268) T ss_pred ECCCCCCEEEEEECCCC---CCEEEEEEEEHHHHHHHH-----HHHHH-HCCHHHHCCCC-CHHHHHHHHH--------- T ss_conf 20377414778731578---753799997500355646-----88877-32646534788-8999999999--------- Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHCC Q ss_conf 99998898720244677664300001022178335300247863242677332002---256899999999999897448 Q gi|254780623|r 206 RLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGH---DLERLSVTLVQSFLLHTLRDG 282 (517) Q Consensus 206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~---d~~~la~~l~~~~~~qi~~~G 282 (517) +.|-+|+.+..+ .+|.||++| .+-++||+||||.... .-.+.|+..+. +...+-+.+++..-.+.-.-| T Consensus 116 ~kEf~NL~R~~e-----AGVrvP~Pi--~~~~nVLvMEfIg~~g-~pAP~LkDv~~e~~e~~~~~~~~v~~~~~l~~~a~ 187 (268) T COG1718 116 RKEFRNLKRAYE-----AGVRVPEPI--AFRNNVLVMEFIGDDG-LPAPRLKDVPLELEEAEGLYEDVVEYMRRLYKEAG 187 (268) T ss_pred HHHHHHHHHHHH-----CCCCCCCCE--ECCCCEEEEEECCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf 999999999997-----599999861--0037758998316778-87987334787715589999999999999998629 Q ss_pred EECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH Q ss_conf 66178786228980289535743403121698999999976699971872789999998412667789368999999 Q gi|254780623|r 283 FFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIR 359 (517) Q Consensus 283 fFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i~ 359 (517) ..|||.-.=||++. +|..++||||..-.++... ...+..+|...++..+...|. .+|.+.+.+.+. T Consensus 188 LVHgDLSEyNiL~~-~~~p~iID~~QaV~~~hp~-------a~e~L~RDv~Ni~~fF~r~gv---~~d~e~~l~~i~ 253 (268) T COG1718 188 LVHGDLSEYNILVH-DGEPYIIDVSQAVTIDHPN-------AFEFLERDVRNIARFFRRKGV---EADPEELLEEIK 253 (268) T ss_pred CCCCCCHHHEEEEE-CCEEEEEECCCCCCCCCCC-------HHHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHH T ss_conf 41135323506777-9907999883221467975-------689999999999999987288---889999999986 No 15 >cd05123 STKc_AGC STKc_AGC: Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required o Probab=99.04 E-value=3.4e-09 Score=90.38 Aligned_cols=141 Identities=20% Similarity=0.216 Sum_probs=87.4 Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67788886555502128887236876403104688777788999875321146854334691799999998878886559 Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR 206 (517) Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~ 206 (517) ||.|+-|+||+|.-+. +|+.||||+.+.... .+- + . .-.+. T Consensus 1 iG~G~fg~Vy~a~~~~--~~~~vAvK~i~~~~~--------------------------~~~-~----~------~~~~~ 41 (250) T cd05123 1 LGKGSFGKVYLVRKKD--TGKLYAMKVLKKKKI--------------------------LKR-N----E------VEHTL 41 (250) T ss_pred CCCCCCEEEEEEEECC--CCCEEEEEEECHHHC--------------------------CCH-H----H------HHHHH T ss_conf 9668584999999989--997999999846775--------------------------598-9----9------99999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHHHC-CCHH---HHHHHHHHHHHHHHHH Q ss_conf 99988987202446776643000010221--7833530024786324267733200-2256---8999999999998974 Q gi|254780623|r 207 LEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRACG-HDLE---RLSVTLVQSFLLHTLR 280 (517) Q Consensus 207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~~~-~d~~---~la~~l~~~~~~qi~~ 280 (517) +|++-+.++.. |.| -++|.-+. ..-.+||||++|-.+.+. +...+ .+.. .++..++.+. .-+-. T Consensus 42 ~E~~il~~l~h-----pnI--v~l~~~~~~~~~~~ivmE~~~gg~L~~~--l~~~~~l~~~~~~~~~~ql~~gl-~~lH~ 111 (250) T cd05123 42 NERDILSRVDH-----PFI--VKLHYAFQTKEKLYLVMEYVNGGDLFTH--LSKEGRFDEERARFYAAEIVLAL-EYLHS 111 (250) T ss_pred HHHHHHHHCCC-----CCC--CCCCCEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHHH-HHHHH T ss_conf 99999997799-----899--8633226359989999948999948999--98759989999999999999999-99998 Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHH Q ss_conf 486617878622898028953574340312169899 Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRE 316 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~ 316 (517) .|+.|-|..|.||+++.+|.+.+.|||+...+.... T Consensus 112 ~~iiHrDIKp~NILi~~~g~vkl~DFGla~~~~~~~ 147 (250) T cd05123 112 LGIIYRDLKPENILLDADGHIKLTDFGLAKEGIDDG 147 (250) T ss_pred CCEEEEECCHHHCCCCCCCCEEEEECCCCEECCCCC T ss_conf 997860256775656689998983745225647887 No 16 >cd06608 STKc_myosinIII_like Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of pho Probab=98.98 E-value=8.6e-10 Score=95.04 Aligned_cols=145 Identities=21% Similarity=0.255 Sum_probs=86.3 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-|+.||-|+||+|+-+. +|+.||||+.++.-. . . . + T Consensus 12 ~~iG~G~fg~V~~~~~~~--t~~~vAiK~i~~~~~---------------------------~----~----~------~ 48 (275) T cd06608 12 EVIGTGTYGKVYKARHKK--TGQLVAIKIMDIIED---------------------------E----E----E------E 48 (275) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCC---------------------------H----H----H------H T ss_conf 897227383999999989--998999998776611---------------------------3----9----9------9 Q ss_pred HHHHHHHHHHHH--CCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHH-HHHHCCCHHHHHHHHHHHHHHHH--- Q ss_conf 599998898720--244677664300001022178335300247863242677-33200225689999999999989--- Q gi|254780623|r 205 LRLEAAAFSEMA--ENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEK-LRACGHDLERLSVTLVQSFLLHT--- 278 (517) Q Consensus 205 ~~~Ea~n~~~~~--~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~-l~~~~~d~~~la~~l~~~~~~qi--- 278 (517) +.+|++-+..+. .|.-..-.+.+..........-.+||||++|-.+.|+-. ....+ +.+-+..+..++.|+ T Consensus 49 ~~~E~~il~~l~~HpnIv~~~~~~~~~~~~~~~~~~yivmE~~~~G~L~dl~~~~~~~~---~~~~e~~i~~i~~qi~~a 125 (275) T cd06608 49 IEEEYNILRKYSNHPNIATFYGAFIKKGPPGSDDQLWLVMELCGGGSVTDLVKGLRKKG---KRLKEEWIAYILRETLRG 125 (275) T ss_pred HHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHH T ss_conf 99999999971289987859899973587776887999996589992999999998728---999999999999999999 Q ss_pred ----HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf ----7448661787862289802895357434031216989 Q gi|254780623|r 279 ----LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 279 ----~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) -..|+.|.|.-|.||+++.+|++-+.|||....++.. T Consensus 126 l~yLH~~~IiHRDlKp~NILl~~~~~vKl~DFGls~~~~~~ 166 (275) T cd06608 126 LAYLHENKVIHRDIKGQNILLTKEGEVKLVDFGVSAQLDST 166 (275) T ss_pred HHHHHHCCEECCCCCHHHEEECCCCCEEEEECCCCEECCCC T ss_conf 99999799760547779978879998999857887474577 No 17 >smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily. Probab=98.98 E-value=5.8e-09 Score=88.65 Aligned_cols=134 Identities=19% Similarity=0.285 Sum_probs=87.5 Q ss_pred HHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88655550212888723687640310468877778899987532114685433469179999999887888655999988 Q gi|254780623|r 132 IAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAA 211 (517) Q Consensus 132 iaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n 211 (517) -|.||+|+-+. +|+.||||+.++.-.. .+ .-++.+|++. T Consensus 2 fg~Vy~a~~~~--~~~~vAiK~i~~~~~~---~~------------------------------------~~~~~~E~~i 40 (244) T smart00220 2 FGKVYLARDKK--TGKLVAIKVIKKEKIK---KK------------------------------------RERILREISI 40 (244) T ss_pred CCEEEEEEECC--CCCEEEEEEEEHHHCH---HH------------------------------------HHHHHHHHHH T ss_conf 88899999989--9989999998555296---89------------------------------------9999999999 Q ss_pred HHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHH-CCCHH---HHHHHHHHHHHHHHHHCCEEC Q ss_conf 987202446776643000010221783--353002478632426773320-02256---899999999999897448661 Q gi|254780623|r 212 FSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRAC-GHDLE---RLSVTLVQSFLLHTLRDGFFH 285 (517) Q Consensus 212 ~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~-~~d~~---~la~~l~~~~~~qi~~~GfFH 285 (517) +.+++. + .|.+.|.-+.+++ .+||||++|-.+.+.- +.. ..+.+ .++..++.+ +.-+-..|+.| T Consensus 41 l~~l~h-----~--niv~~~~~~~~~~~~~ivmEy~~~gsL~~~i--~~~~~l~~~~i~~~~~qi~~g-l~ylH~~~ivH 110 (244) T smart00220 41 LKKLKH-----P--NIVRLYDVFEDEDKLYLVMEYCDGGDLFDLL--KKRGRLSEDEARFYARQILSA-LEYLHSNGIIH 110 (244) T ss_pred HHHCCC-----C--CCCCCCEEEEECCEEEEEEECCCCCCHHHHH--HHCCCCCHHHHHHHHHHHHHH-HHHHHHCCEEE T ss_conf 997799-----2--9997334999899999999688999389999--876999999999999999999-99999899252 Q ss_pred CCCCCCEEEEECCCCEEEEECCHHEECCHHH Q ss_conf 7878622898028953574340312169899 Q gi|254780623|r 286 ADLHPGNLFVDSKGYIVAVDMGITGRLSKRE 316 (517) Q Consensus 286 aDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~ 316 (517) .|..|.||+++++|.+.+.|||+...++... T Consensus 111 rDiKp~NIli~~~~~iKl~DFG~a~~~~~~~ 141 (244) T smart00220 111 RDLKPENILLDEDGHVKLADFGLARQLDPGG 141 (244) T ss_pred CCCCHHHEEECCCCCEEEEECCCCEECCCCC T ss_conf 4366563798589998998746126737887 No 18 >cd05612 STKc_PRKX_like STKc_PRKX_like: Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell Probab=98.97 E-value=1.9e-09 Score=92.34 Aligned_cols=138 Identities=18% Similarity=0.283 Sum_probs=89.4 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|++||-|+||+|+-+. +|+.||||+.+..-.. +. ...-. T Consensus 7 ~~lG~G~fg~V~~a~~~~--t~~~~AiK~i~~~~~~--------------------------~~-----------~~~~~ 47 (291) T cd05612 7 ETLGTGTFGRVYLVRHKA--SGAYYALKVLAIPEVI--------------------------RL-----------KQVEH 47 (291) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHHCC--------------------------CH-----------HHHHH T ss_conf 995138891999999889--9989999998577805--------------------------98-----------99999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH---- Q ss_conf 5999988987202446776643000010221783--3530024786324267733200225689999999999989---- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT---- 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi---- 278 (517) +.+|++-+.++.. |. |.+.|.-+.+++ .+||||++|-.+.+. +...+. +.+.-+..|+.|+ T Consensus 48 ~~~E~~il~~l~H-----p~--Iv~l~~~~~~~~~~yivmEy~~gg~L~~~--i~~~~~----l~e~~~~~~~~qi~~aL 114 (291) T cd05612 48 VHNEKSILSEISH-----PF--IVNMYWTFHDDKFLYMLMEYVPGGELFSY--LRKAGK----FSNSTARFYAAEIVCAL 114 (291) T ss_pred HHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCC----CCHHHHHHHHHHHHHHH T ss_conf 9999999987799-----89--89099999989999999978899828999--987399----99999999999999999 Q ss_pred ---HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf ---744866178786228980289535743403121698 Q gi|254780623|r 279 ---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 279 ---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) -..|+.|-|.-|.||+++.+|++.+.|||+...+.. T Consensus 115 ~ylH~~~IiHRDlKP~NIll~~~g~vKl~DFG~a~~~~~ 153 (291) T cd05612 115 EYLHSKEIVYRDLKPENLLLDKEGHIKITDFGFAKKVRD 153 (291) T ss_pred HHHHHCCCEECCCCCCCCCCCCCCCEEECCCCCEEECCC T ss_conf 999977974143266553236999789632410044365 No 19 >cd00180 S_TKc Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail. Probab=98.97 E-value=9.3e-10 Score=94.80 Aligned_cols=141 Identities=18% Similarity=0.242 Sum_probs=93.0 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.||+|+-|+||+|+-+. +|+.||||+.+..-.. + . .. -. T Consensus 6 ~~iG~G~fg~Vy~~~~~~--~~~~vAiK~i~~~~~~--------------------~--------~----~~------~~ 45 (256) T cd00180 6 EKLGKGAFGKVYLARDKK--TGELVAIKIIKKKKEK--------------------K--------K----QV------ER 45 (256) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHCC--------------------H--------H----HH------HH T ss_conf 898418784999999989--9989999998334489--------------------8--------9----99------99 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHC-CCH---HHHHHHHHHHHHHHH Q ss_conf 599998898720244677664300001022178--33530024786324267733200-225---689999999999989 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACG-HDL---ERLSVTLVQSFLLHT 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~-~d~---~~la~~l~~~~~~qi 278 (517) |.+|++.+..+.. |. |.++|.-+.++ -.+||||++|..+.+.- +..+ .+. ..++..++.+. .-+ T Consensus 46 ~~~E~~il~~l~H-----pn--Iv~~~~~~~~~~~~~ivmEy~~gg~L~~~i--~~~~~l~~~~~~~i~~qi~~aL-~yl 115 (256) T cd00180 46 ILREIKILKRLNH-----PN--IVKLYDVFEDEDKLYLVMEYMSGGDLFDLL--KKRGRLSEDEARFYFRQILSGL-EYL 115 (256) T ss_pred HHHHHHHHHHCCC-----CC--CCCEEEEEEECCEEEEEEECCCCCCHHHHH--HHCCCCCHHHHHHHHHHHHHHH-HHH T ss_conf 9999999997799-----69--995999999899999999788998689999--8769999999999999999999-999 Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 7448661787862289802895357434031216989 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) -..|+.|-|.-|.||+++.+|.+-+.|||+...+++. T Consensus 116 H~~~iiHRDiKp~NILl~~~~~vKL~DFGla~~~~~~ 152 (256) T cd00180 116 HSKGIIHRDLKPENILLDEDGHVKIADFGLAKQLDSG 152 (256) T ss_pred HHCCCEEEECCHHHEEECCCCCEEEEECCCCEECCCC T ss_conf 9899677445779879989998999978886576789 No 20 >COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms] Probab=98.97 E-value=8.7e-09 Score=87.25 Aligned_cols=185 Identities=23% Similarity=0.241 Sum_probs=123.7 Q ss_pred HHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 86766677888865555021288872368764031046887777889998753211468543346917999999988788 Q gi|254780623|r 122 EFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKM 201 (517) Q Consensus 122 ~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 201 (517) .+.++|+-+-=+-||.|.... |++||||.-|-| +..++. .++--..+..... ..++.+.. .+-. T Consensus 94 ~iG~~IGvGKEsdVY~~~~~~---g~~~~vKfHR~G-rtsFrk----vk~~R~y~~~~~h-~sWl~~sR------l~A~- 157 (304) T COG0478 94 AIGTKIGVGKESDVYVAIDPK---GRKVAVKFHRLG-RTSFRK----VKRNRDYLADKEH-GSWLYVSR------LAAE- 157 (304) T ss_pred HHCCCCCCCCCCEEEEEECCC---CCEEEEEEEECC-CHHHHH----HHHHHHHHCCCCC-CCHHHHHH------HHHH- T ss_conf 623312567543179998899---988899862057-235654----2200656513567-62224678------9899- Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 86559999889872024467766430000102217833530024786324267733200225689999999999989744 Q gi|254780623|r 202 EMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRD 281 (517) Q Consensus 202 ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~ 281 (517) +|-.-+.++. ..++.||+|+.- +.+++||||++|.++..+.. ...+++.+...+++.+-. .+.. T Consensus 158 -----rEf~~L~~L~-----~~G~~VP~P~~~--nRHaVvMe~ieG~eL~~~r~---~~en~~~il~~il~~~~~-~~~~ 221 (304) T COG0478 158 -----REFEALQRLY-----PEGVKVPKPIAW--NRHAVVMEYIEGVELYRLRL---DVENPDEILDKILEEVRK-AYRR 221 (304) T ss_pred -----HHHHHHHHHH-----HCCCCCCCCCCC--CCCEEEEEHCCCCEEECCCC---CCCCHHHHHHHHHHHHHH-HHHC T ss_conf -----9999999840-----338989985344--45243020105614002667---631789999999999999-9972 Q ss_pred CEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC Q ss_conf 8661787862289802895357434031216989999999766999718727899999984126 Q gi|254780623|r 282 GFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYV 345 (517) Q Consensus 282 GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~ 345 (517) |+.|||.-+=||+|++||.+++|||-.+-..+......+ ..+|...+++.+..-... T Consensus 222 GiVHGDlSefNIlV~~dg~~~vIDwPQ~v~~~hp~a~e~-------l~RDv~nii~yFrrky~~ 278 (304) T COG0478 222 GIVHGDLSEFNILVTEDGDIVVIDWPQAVPISHPDAEEL-------LERDVENIIKYFRRKYGY 278 (304) T ss_pred CCCCCCCCHHEEEEECCCCEEEEECCCCCCCCCCCHHHH-------HHHHHHHHHHHHHHHCCC T ss_conf 911147735418981699889986766645789788999-------996899999999986066 No 21 >cd05122 PKc_STE Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phospho Probab=98.96 E-value=1.2e-09 Score=93.82 Aligned_cols=139 Identities=21% Similarity=0.277 Sum_probs=88.9 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.||.|+-|+||+|.-.. +|+.||||+.+..-.+ .. -. T Consensus 6 ~~iG~G~fg~V~~~~~~~--~~~~vAiK~i~~~~~~------------------------------~~----------~~ 43 (253) T cd05122 6 EKIGKGAFGTVYKARHKK--TGELVAVKVIKLESDE------------------------------EQ----------EQ 43 (253) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCHH------------------------------HH----------HH T ss_conf 797138781999999999--9989999997447456------------------------------89----------99 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHHHC-CCH---HHHHHHHHHHHHHHH Q ss_conf 5999988987202446776643000010221--7833530024786324267733200-225---689999999999989 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRACG-HDL---ERLSVTLVQSFLLHT 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~~~-~d~---~~la~~l~~~~~~qi 278 (517) +.+|++.+.+++. |.| -+.+.-+. +.-.+||||++|-.+.+.- +..+ .+. ..++..++.+.- -+ T Consensus 44 ~~~E~~~l~~l~h-----pnI--v~l~~~~~~~~~~~ivmE~~~gg~L~~~l--~~~~~l~e~~~~~~~~qi~~al~-~l 113 (253) T cd05122 44 ILNEIQILKKCKH-----PNI--VKYYGSYLKKDELWIVMEYCDGGSLDDLL--KSTGPLPESQIAYICREVLQGLE-YL 113 (253) T ss_pred HHHHHHHHHHCCC-----CCC--CCEEEEEEECCEEEEEEECCCCCCHHHHH--HHCCCCCHHHHHHHHHHHHHHHH-HH T ss_conf 9999999986799-----899--91999999899999999788999989999--75599999999999999999999-99 Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 7448661787862289802895357434031216989 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) -..|+.|-|.-|.||+++.+|++.+.|||+...+++. T Consensus 114 H~~~ivHRDlKp~Nill~~~g~vKl~DFGla~~~~~~ 150 (253) T cd05122 114 HSNGIIHRDIKPANILLTSDGEVKLADFGVSAQLSDT 150 (253) T ss_pred HHCCEECCCCCHHHEEECCCCCEEEEECCCEEEECCC T ss_conf 9889340657788889989998899243712682478 No 22 >cd05580 STKc_PKA STKc_PKA: Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It pl Probab=98.96 E-value=4.3e-09 Score=89.67 Aligned_cols=139 Identities=20% Similarity=0.276 Sum_probs=89.1 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|++|+-|+||+|+-+. +|+.||||+....- + . .. . +.-. T Consensus 7 ~~lG~G~fg~V~~a~~~~--t~~~vAiK~i~k~~-------~---------~----------~~-~----------~~~~ 47 (290) T cd05580 7 KTLGTGSFGRVMLVKHKG--TGKYYAMKILSKAK-------I---------V----------KL-K----------QVEH 47 (290) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECHHH-------C---------C----------CH-H----------HHHH T ss_conf 998327683999999989--99899999985688-------3---------3----------77-8----------9999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH---- Q ss_conf 5999988987202446776643000010221783--3530024786324267733200225689999999999989---- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT---- 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi---- 278 (517) +.+|.+.+..++. |. |.+.|.-+.+++ .+||||++|-.+.+. +...+ .+.+.-+..|+.|+ T Consensus 48 ~~~E~~il~~l~h-----pn--Iv~l~~~~~~~~~~yivmEy~~gg~L~~~--l~~~~----~l~e~~~~~~~~Qi~~aL 114 (290) T cd05580 48 VLNEKRILQAVRH-----PF--LVNLLGSFKDNSNLYMVMEFVPGGELFSL--LRRSG----RFPEPVARFYAAQVVLAL 114 (290) T ss_pred HHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCC----CCCHHHHHHHHHHHHHHH T ss_conf 9999999986799-----89--99099999989999999958999898999--98749----999999999999999999 Q ss_pred ---HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf ---7448661787862289802895357434031216989 Q gi|254780623|r 279 ---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 279 ---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) -..|+.|-|.-|.||+++.+|.+-+.|||+...++.. T Consensus 115 ~ylH~~~IiHRDiKpeNILl~~~g~iKL~DFG~a~~~~~~ 154 (290) T cd05580 115 EYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGR 154 (290) T ss_pred HHHHHCCEEEEECCCCCCCCCCCCCEEEEECCCCEECCCC T ss_conf 9999889242023643333068998898005533664788 No 23 >cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c Probab=98.96 E-value=4.2e-09 Score=89.69 Aligned_cols=160 Identities=19% Similarity=0.192 Sum_probs=97.3 Q ss_pred HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 6677888865555021288872368764031046887777889998753211---4685433469179999999887888 Q gi|254780623|r 126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQE---KLLPSMRRLCFSAVVRALEQVTKME 202 (517) Q Consensus 126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~---~~~~~~~~~~~~~~~~e~~~~l~~E 202 (517) +|++|==|-||.|.-.+ |.+||||+-|-+.. .++. .. +..+ ++......-+...++.. T Consensus 4 ~Ig~GKEa~Vy~a~~~~---g~~~alKi~r~~~~-sFk~----~~---~Y~~gd~r~~~~~~~~~~r~~~~~-------- 64 (190) T cd05147 4 CISTGKEANVYHATTAN---GEERAIKIYKTSIL-VFKD----RD---RYVSGEFRFRHGYCKSNPRKMVRT-------- 64 (190) T ss_pred CCCCCCCEEEEEEECCC---CCEEEEEEEECCCC-CCCC----HH---HHHCCCHHHHCCCCCCCHHHHHHH-------- T ss_conf 73046260489999899---98999999576701-1046----67---764376656425556698899999-------- Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECC--CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 6559999889872024467766430000102217833530024--78632426773320022568999999999998974 Q gi|254780623|r 203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWI--DGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLR 280 (517) Q Consensus 203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i--~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~ 280 (517) -=..|-+|+.++.+ .++.||+++ ...++||||||| +|.+...+...+....+...+-..+++..-++.-. T Consensus 65 -wA~kEf~~L~rl~~-----~Gv~VP~Pi--~~~rhvlvMe~Ig~~g~pap~L~d~~~~~~~~~~~~~~il~~~~~ly~~ 136 (190) T cd05147 65 -WAEKEMRNLKRLVT-----AGIPCPEPI--LLKSHVLVMEFIGDDGWAAPRLKDAPLSESKARELYLQVIQIMRILYQD 136 (190) T ss_pred -HHHHHHHHHHHHHH-----CCCCCCCEE--EECCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf -99999999999998-----599999846--8529899999855899513201458898799999999999999999997 Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf 486617878622898028953574340312169 Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) .|+.|||.-+=||++. ++++++||||.+-..+ T Consensus 137 ~~lVHGDLSEyNIl~~-~~~~~iID~pQaV~~~ 168 (190) T cd05147 137 CRLVHADLSEYNLLYH-DGKLYIIDVSQSVEHD 168 (190) T ss_pred CCCEECCCCHHHEEEC-CCCEEEEECCCCCCCC T ss_conf 4932245315420524-8998999666411478 No 24 >cd05115 PTKc_Zap-70 Catalytic Domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa. Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho Probab=98.95 E-value=1.2e-08 Score=86.30 Aligned_cols=141 Identities=15% Similarity=0.170 Sum_probs=92.4 Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67788886555502128887236876403104688777788999875321146854334691799999998878886559 Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR 206 (517) Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~ 206 (517) |++||-|+||+|+++..+.+.+||||+.+++-.+.... +|. T Consensus 3 lG~G~fG~Vykg~~~~~~~~~~VavK~l~~~~~~~~~~---------------------------------------~f~ 43 (257) T cd05115 3 LGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRD---------------------------------------EMM 43 (257) T ss_pred CCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCHHHHH---------------------------------------HHH T ss_conf 51168929999999759945999999988137978999---------------------------------------999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHHHCCCHHHH---HHHHHHHHHHHHHHC Q ss_conf 99988987202446776643000010221--7833530024786324267733200225689---999999999989744 Q gi|254780623|r 207 LEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRACGHDLERL---SVTLVQSFLLHTLRD 281 (517) Q Consensus 207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~~~~d~~~l---a~~l~~~~~~qi~~~ 281 (517) +|++.+.+++. |.|. +.|. +| ..-.+||||++|-++.+.-..+......+.+ +..+..+ +.-+-.. T Consensus 44 ~E~~~l~~l~H-----pnIV--~l~g-~~~~~~~~ivmE~~~~G~L~~~l~~~~~~l~~~~~~~i~~qia~g-l~yLH~~ 114 (257) T cd05115 44 REAEIMHQLDN-----PYIV--RMIG-VCEAEALMLVMEMASGGPLNKFLSGKKDEITVSNVVELMHQVSMG-MKYLEGK 114 (257) T ss_pred HHHHHHHHCCC-----CCEE--EEEE-EEECCCEEEEEEECCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHH-HHHHHHC T ss_conf 99999985899-----6880--6999-993197799999179987899983267899999999999999999-9999868 Q ss_pred CEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 8661787862289802895357434031216989 Q gi|254780623|r 282 GFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 282 GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) |+.|.|.-|.||+++.++.+-+-|||+...+... T Consensus 115 ~iiHrDLK~~NiLl~~~~~~Ki~DFGls~~~~~~ 148 (257) T cd05115 115 NFVHRDLAARNVLLVNQHYAKISDFGLSKALGAD 148 (257) T ss_pred CCCCCCCCCCEEEECCCCCEEEEECCCCEECCCC T ss_conf 9656767621078858997899976885476899 No 25 >cd05075 PTKc_Axl Catalytic Domain of the Protein Tyrosine Kinase, Axl. Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor Probab=98.94 E-value=3e-09 Score=90.79 Aligned_cols=153 Identities=14% Similarity=0.227 Sum_probs=92.1 Q ss_pred HHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 67666778888655550212888723687640310468877778899987532114685433469179999999887888 Q gi|254780623|r 123 FDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME 202 (517) Q Consensus 123 fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E 202 (517) +.+.||+||-|+||+|+++..++..+||||+.+......- + . T Consensus 3 lg~~iG~G~fG~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~-------------------------------~-------~ 44 (272) T cd05075 3 LGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRS-------------------------------E-------M 44 (272) T ss_pred CCCEEEECCCCEEEEEEECCCCEEEEEEEEEECCCCCCHH-------------------------------H-------H T ss_conf 3898840778199999995999899999999520328989-------------------------------9-------9 Q ss_pred HHHHHHHHHHHHHHCC-CCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHC-----CCHH---HHHHHHHHH Q ss_conf 6559999889872024-467766430000102217833530024786324267733200-----2256---899999999 Q gi|254780623|r 203 MDLRLEAAAFSEMAEN-TVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACG-----HDLE---RLSVTLVQS 273 (517) Q Consensus 203 lD~~~Ea~n~~~~~~~-~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~-----~d~~---~la~~l~~~ 273 (517) -+|.+|++.+.+++.- .-..-.+.+...-.+....-++||||++|-.+.+.-.....+ .+.+ .++..++.+ T Consensus 45 ~~f~~E~~~l~~l~HpnIv~l~G~~~~~~~~~~~~~~~lv~ey~~~GsL~~~l~~~~~~~~~~~l~~~~~~~~~~~ia~g 124 (272) T cd05075 45 EDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASG 124 (272) T ss_pred HHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 99999999999779998824888996445555677668999927999799998541146776779999999999999999 Q ss_pred HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 99989744866178786228980289535743403121698 Q gi|254780623|r 274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) +.-+-..|++|.|.-|.||+++.++.+.+-|||+...+.. T Consensus 125 -L~yLH~~~ivHrDLK~~NiLl~~~~~~Kl~DFGls~~~~~ 164 (272) T cd05075 125 -MEYLSSKSFIHRDLAARNCMLNENMNVCVADFGLSKKIYN 164 (272) T ss_pred -HHHHHHCCEECCCCCCCEEEECCCCCEEEECCCCCEECCC T ss_conf -9987109836476761238988999899810511215468 No 26 >PRK13184 pknD serine/threonine-protein kinase; Reviewed Probab=98.93 E-value=1.8e-09 Score=92.57 Aligned_cols=138 Identities=22% Similarity=0.254 Sum_probs=89.2 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) ++||+|..|+||+|.=. ..|+.||||+.+|+..+ |-. + .-- T Consensus 8 r~LGrGGMG~VYlArD~--~LgR~VALKvLr~~ls~----d~~---------------------------~------reR 48 (933) T PRK13184 8 RLIGKGGMGEVYLAYDP--VCSRKVALKRIREDLSD----NPL---------------------------L------KKR 48 (933) T ss_pred EEEEECCCEEEEEEEEC--CCCCEEEEEEECHHHCC----CHH---------------------------H------HHH T ss_conf 79852788789999988--99974899982936667----989---------------------------9------999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHH-HHHHCCCHHHHHH-----HHHHHHHH Q ss_conf 599998898720244677664300001022178--335300247863242677-3320022568999-----99999999 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEK-LRACGHDLERLSV-----TLVQSFLL 276 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~-l~~~~~d~~~la~-----~l~~~~~~ 276 (517) |.+||+.+.++. .|.| -.||.-.... --+||||++|..+.+.-. ....+.-++.+++ ..+ .++. T Consensus 49 FlREAriaArL~-----HPNI--V~VYD~gedg~~~YiVMEyVeG~TL~~LLr~l~qk~~Lp~elae~~sv~~lL-~If~ 120 (933) T PRK13184 49 FLREAKIAADLI-----HPGV--VPVYTICSDGDPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFL-SIFH 120 (933) T ss_pred HHHHHHHHHHCC-----CCCC--CEEEEEEEECCEEEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHCCCHHHHH-HHHH T ss_conf 999999998589-----9398--9298868789953899815899878999976211478863442102288999-9999 Q ss_pred H-------HHHCCEECCCCCCCEEEEECCCCEEEEECCHH Q ss_conf 8-------97448661787862289802895357434031 Q gi|254780623|r 277 H-------TLRDGFFHADLHPGNLFVDSKGYIVAVDMGIT 309 (517) Q Consensus 277 q-------i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~v 309 (517) | .-..|+.|-|.-|+|||++.+|.+.++|||+. T Consensus 121 QIc~ALayAHs~GIVHRDLKPaNILLg~~GeVKLlDFGLA 160 (933) T PRK13184 121 KICATVEYVHSRGILHRDLKPDNILLGLFSEVVILDWGAA 160 (933) T ss_pred HHHHHHHHHHHCCCCCCCCCHHHEEECCCCCEEECCCCCC T ss_conf 9999999999786835889779978889998899127654 No 27 >cd05063 PTKc_EphR_A2 Catalytic Domain of the Protein Tyrosine Kinase, Ephrin Receptor A2. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored Probab=98.92 E-value=9.2e-09 Score=87.06 Aligned_cols=143 Identities=15% Similarity=0.210 Sum_probs=92.8 Q ss_pred HHHHHHHHHHHHHHHHEEC-CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 7666778888655550212-888723687640310468877778899987532114685433469179999999887888 Q gi|254780623|r 124 DDPIAAASIAQVHPAVVHD-INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME 202 (517) Q Consensus 124 dePlasASiaQVh~A~l~d-~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E 202 (517) ++-|+.||.|+||+|+++. |..+..||||+.+++..+.. . T Consensus 10 ~~~iG~G~fG~Vykg~~~~~g~~~~~vavK~l~~~~~~~~---------------------------------------~ 50 (268) T cd05063 10 QKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQ---------------------------------------R 50 (268) T ss_pred EEEEEECCCCEEEEEEEECCCCEEEEEEEEEECCCCCHHH---------------------------------------H T ss_conf 1698327883999999988997668999999476779899---------------------------------------9 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC---CCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHHHHHH Q ss_conf 6559999889872024467766430000102217---83353002478632426773320022568---99999999999 Q gi|254780623|r 203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE---RDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQSFLL 276 (517) Q Consensus 203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st---~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~~~~~ 276 (517) -+|.+|++.+.+++. +.|. +.|. +|+ .-.|||||++|-.+.+.-.-.....+..+ ++..++. -+. T Consensus 51 ~~f~~E~~~l~~l~H-----~nIv--~~~g-~~~~~~~~~iv~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~ia~-gL~ 121 (268) T cd05063 51 QDFLSEASIMGQFSH-----HNII--RLEG-VVTKFKPAMIITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAA-GMK 121 (268) T ss_pred HHHHHHHHHHHHCCC-----CCCC--CEEE-EEEECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHH-HHH T ss_conf 999999999986689-----7897--3507-998899889999828989799976402789999999999999999-999 Q ss_pred HHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 89744866178786228980289535743403121698 Q gi|254780623|r 277 HTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 277 qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) -+-..|+.|.|.-|.||+++.++.+-+-|||+...+.. T Consensus 122 yLH~~~iiHrDlK~~NILld~~~~~Kl~DFGls~~~~~ 159 (268) T cd05063 122 YLSDMNYVHRDLAARNILVNSNLECKVSDFGLSRVLED 159 (268) T ss_pred HHHHCCEECCCCCCCEEEECCCCCEEECCCCCCEECCC T ss_conf 98329987553475507888999889823765547756 No 28 >cd05112 PTKc_Itk Catalytic Domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase. Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ Probab=98.91 E-value=4e-09 Score=89.88 Aligned_cols=136 Identities=19% Similarity=0.240 Sum_probs=91.6 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.||+||-|+||+|.... +++||||+.+.+- .+ +-+ T Consensus 10 ~~iG~G~fg~Vy~~~~~~---~~~VAvK~~~~~~---------------------------~~--------------~~~ 45 (256) T cd05112 10 QEIGSGQFGLVWLGYWLE---KRKVAIKTIREGA---------------------------MS--------------EED 45 (256) T ss_pred EEEECCCCCEEEEEEECC---CCEEEEEEECCCC---------------------------CC--------------HHH T ss_conf 898058585999999879---9999999988687---------------------------88--------------899 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHHHCCCHH---HHHHHHHHHHHHHHH Q ss_conf 599998898720244677664300001022--178335300247863242677332002256---899999999999897 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRACGHDLE---RLSVTLVQSFLLHTL 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~l~~~~~~qi~ 279 (517) |.+|++.+.+++. |. |-+.|.-. .+.-.|||||++|-.+.+.-.-.....+.+ .++..++.+ +.-+- T Consensus 46 f~~E~~~l~~l~H-----pn--Iv~~~g~~~~~~~~~iv~Ey~~~G~L~~~l~~~~~~~~~~~~~~i~~~ia~g-l~yLH 117 (256) T cd05112 46 FIEEAQVMMKLSH-----PK--LVQLYGVCTERSPICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEG-MAYLE 117 (256) T ss_pred HHHHHHHHHHCCC-----CC--CCCCCEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHH T ss_conf 9999999997699-----98--9040317721998999996689998899997547999999999999999999-99983 Q ss_pred HCCEECCCCCCCEEEEECCCCEEEEECCHHEEC Q ss_conf 448661787862289802895357434031216 Q gi|254780623|r 280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL 312 (517) Q Consensus 280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l 312 (517) ..|+.|.|.-|.||+++.++.+-+-|||+...+ T Consensus 118 ~~~iiHrDlk~~NiLl~~~~~~Kl~DFGls~~~ 150 (256) T cd05112 118 SSNVIHRDLAARNCLVGENQVVKVSDFGMTRFV 150 (256) T ss_pred HCCEECCCCCCCEEEECCCCCEEEEECCCCEEC T ss_conf 689156757716389989998999626875055 No 29 >cd06639 STKc_myosinIIIB Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a reg Probab=98.91 E-value=3.1e-10 Score=98.45 Aligned_cols=154 Identities=19% Similarity=0.280 Sum_probs=92.0 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH Q ss_conf 40478899999986766677888865555021288872368764031046887777889998753211468543346917 Q gi|254780623|r 110 SALKAPIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFS 189 (517) Q Consensus 110 ~elg~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~ 189 (517) +++|.|.+. | ++-+.|+.||-|.||+|+-+. +|+.||||+..+.- + T Consensus 15 ~~~g~p~d~-Y-~i~~~iG~G~fg~Vy~a~~~~--~~~~vAvK~i~~~~----------------------------~-- 60 (291) T cd06639 15 ESLGDPTDT-W-EIIETIGKGTYGKVYKVTNKK--DGSLAAVKILDPIS----------------------------D-- 60 (291) T ss_pred HHCCCCCCC-E-EEEEEEECCCCCEEEEEEECC--CCCEEEEEEECCCC----------------------------C-- T ss_conf 984997534-7-998898237582999999889--99899999988400----------------------------5-- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC-------CCEEEEECCCCCCCCHHHH-HHHHC- Q ss_conf 99999998878886559999889872024467766430000102217-------8335300247863242677-33200- Q gi|254780623|r 190 AVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE-------RDVITMEWIDGVKISDTEK-LRACG- 260 (517) Q Consensus 190 ~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st-------~~VLvmE~i~G~~i~d~~~-l~~~~- 260 (517) ....+ .+|.+-++.+. +.|. |-+.|.-+.+ .-.+||||++|-.+.+.-. ....+ T Consensus 61 -----~~~~~------~~E~~il~~l~----~Hpn--Iv~~~~~~~~~~~~~~~~l~ivmE~~~gg~L~~~i~~~~~~~~ 123 (291) T cd06639 61 -----VDEEI------EAEYNILQSLP----NHPN--VVKFYGMFYKADKLVGGQLWLVLELCNGGSVTELVKGLLICGQ 123 (291) T ss_pred -----CHHHH------HHHHHHHHHHC----CCCC--EEEEEEEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCC T ss_conf -----28999------99999999731----7999--8899999995475678718999976899969999998776079 Q ss_pred -CCHHH---HHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf -22568---99999999999897448661787862289802895357434031216989 Q gi|254780623|r 261 -HDLER---LSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 261 -~d~~~---la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) .+... ++..++. -+.-+-..|+.|-|.-|.||+++.+|.+-+.|||+...++.. T Consensus 124 ~l~e~~~~~i~~qi~~-aL~ylH~~~IiHRDlKP~NILl~~~g~vKl~DFGls~~~~~~ 181 (291) T cd06639 124 RLDEAMISYILYGALL-GLQHLHNNRIIHRDVKGNNILLTTEGGVKLVDFGVSAQLTST 181 (291) T ss_pred CCCHHHHHHHHHHHHH-HHHHHHHCCEEECCCCHHHEEECCCCCEEEECCCEEEECCCC T ss_conf 9999999999999999-999998789340237747778868998898226122571478 No 30 >cd05581 STKc_PDK1 STKc_PDK1: Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential fo Probab=98.91 E-value=8.4e-09 Score=87.39 Aligned_cols=143 Identities=16% Similarity=0.303 Sum_probs=90.4 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-||.||-|.||+|+-+. +|+.||||+....-. . . . .-...+ T Consensus 7 ~~iG~G~fg~V~~a~~~~--tg~~vAvK~i~~~~~---~--------------~---~-----------~~~~~~----- 48 (279) T cd05581 7 KILGEGSFSTVYLAKEKE--TNKEYAIKVLDKRHL---I--------------K---E-----------KKVKYV----- 48 (279) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHC---C--------------C---H-----------HHHHHH----- T ss_conf 797327790999999889--998999999807890---5--------------6---7-----------789999----- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH----- Q ss_conf 5999988987202446776643000010221783--353002478632426773320022568999999999998----- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH----- 277 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q----- 277 (517) .+|..-+.++. +.|. |.+.|.-+.+++ .|+|||++|-.+.+. +...+. +-+..+..++.| T Consensus 49 -~~E~~il~~l~----~Hp~--Iv~l~~~~~~~~~~yivmE~~~gG~L~~~--l~~~~~----l~e~~~~~~~~qi~~gL 115 (279) T cd05581 49 -KREKEVLTRLN----GHPG--IVKLYYTFQDEENLYFVLEYAENGELLEY--IKKFGS----FDEKCTRFYTAEILLAL 115 (279) T ss_pred -HHHHHHHHHCC----CCCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCC----CCHHHHHHHHHHHHHHH T ss_conf -99999998427----9989--78399999989999999948899878999--987699----89999999999999999 Q ss_pred --HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHH Q ss_conf --97448661787862289802895357434031216989999 Q gi|254780623|r 278 --TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERR 318 (517) Q Consensus 278 --i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~ 318 (517) +-..|+.|-|.-|.||+++.+|.+.+.|||....+++.... T Consensus 116 ~~lH~~~ivHRDiKpeNILl~~~g~~kl~DFG~a~~~~~~~~~ 158 (279) T cd05581 116 EYLHSKGIIHRDLKPENILLDKDGHIKITDFGTAKVLDPNSSP 158 (279) T ss_pred HHHHHCCCCCCCCCHHHEEECCCCCEEEECCCCCEECCCCCCC T ss_conf 9999888630547466679989998899227665466776543 No 31 >cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves Probab=98.91 E-value=1.1e-08 Score=86.55 Aligned_cols=141 Identities=22% Similarity=0.248 Sum_probs=92.5 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +|+..+-..+||+-... +++.|+|+-+++.. ..| T Consensus 4 ~~l~~G~~N~~y~~~~~----~~~~vlR~~~~~~~------------------------------------------~~~ 37 (155) T cd05120 4 KLLKGGLTNRVYLLGTK----DEDYVLKINPSREK------------------------------------------GAD 37 (155) T ss_pred CCCCCCCCCCEEEEEEC----CEEEEEEECCCCCC------------------------------------------HHH T ss_conf 18799871276999989----96799997999855------------------------------------------655 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 59999889872024467766430000102217--8335300247863242677332002256899999999999897448 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDG 282 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~G 282 (517) ..+|+..++..++. .+.+|++|....+ ...++|||++|.++++........ -.+++++.+.+ ++++-..+ T Consensus 38 ~~~E~~~l~~l~~~-----~~~~P~~~~~~~~~~~~~~i~~~i~G~~l~~~~~~~~~~-~~~~l~~~l~~--lh~~~~~~ 109 (155) T cd05120 38 REREVAILQLLARK-----GLPVPKVLASGESDGWSYLLMEWIEGETLDEVSEEEKED-IAEQLAELLAK--LHQLPLLV 109 (155) T ss_pred HHHHHHHHHHHHHC-----CCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCHHHHHH-HHHHHHHHHHH--HHCCCCCE T ss_conf 99999999999756-----989787999962699449999721586334479889999-99999999999--86458832 Q ss_pred EECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHH Q ss_conf 6617878622898028953574340312169899999 Q gi|254780623|r 283 FFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRF 319 (517) Q Consensus 283 fFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~ 319 (517) +.|+|.|||||++++++.+++|||+.++.=++..=-+ T Consensus 110 l~H~Dl~~~Nil~~~~~~~~lIDwe~a~~~d~~~Dla 146 (155) T cd05120 110 LCHGDLHPGNILVDDGKILGIIDWEYAGYGPPAFDLA 146 (155) T ss_pred EECCCCCCCCEEEECCCEEEEECCHHCCCCCHHHHHH T ss_conf 6917678670899189979998174316388999999 No 32 >pfam00069 Pkinase Protein kinase domain. Probab=98.91 E-value=2.7e-09 Score=91.22 Aligned_cols=141 Identities=19% Similarity=0.314 Sum_probs=91.2 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.|+-|+||+|+-+. +|+.||||+.+..-.+ + + ..-. T Consensus 5 ~~iG~G~fg~V~~~~~~~--~~~~vAiK~i~~~~~~--------------------~------------~------~~~~ 44 (260) T pfam00069 5 RKLGSGSFGTVYKAKHKG--TGKIVAVKILKKRSEK--------------------S------------K------KDQT 44 (260) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHHCC--------------------H------------H------HHHH T ss_conf 997328893999999999--9989999998333289--------------------5------------8------9999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCC---HHHHHHHHHHHHHHHHH Q ss_conf 599998898720244677664300001022178--3353002478632426773320022---56899999999999897 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHD---LERLSVTLVQSFLLHTL 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d---~~~la~~l~~~~~~qi~ 279 (517) +.+|++.+.+++. |. |-+.|.-+.++ -.|||||++|-.+.+.-.- ....+ ...++..++.+. .-+- T Consensus 45 ~~~E~~il~~l~H-----pn--Iv~~~~~~~~~~~~~ivmEy~~gg~L~~~l~~-~~~l~~~~~~~~~~qi~~al-~ylH 115 (260) T pfam00069 45 ARREIRILRRLSH-----PN--IVRLIDAFEDKDHLYLVMEYCEGGDLFDYLSR-GGPLSEDEAKKIALQILRGL-EYLH 115 (260) T ss_pred HHHHHHHHHHCCC-----CC--CCCEEEEEEECCEEEEEEECCCCCCHHHHHHH-CCCCCHHHHHHHHHHHHHHH-HHHH T ss_conf 9999999996799-----89--99299999989999999978899818999986-79999999999999999999-9999 Q ss_pred HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 44866178786228980289535743403121698 Q gi|254780623|r 280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) ..|+.|-|.-|.||+++.+|.+-+.|||+...++. T Consensus 116 ~~~iiHRDiKp~NILl~~~~~~Kl~DFGla~~~~~ 150 (260) T pfam00069 116 SNGIIHRDLKPENILLDENGVVKIADFGLAKKLEK 150 (260) T ss_pred HCCCEECCCCHHHEEECCCCCEEEEECCCCEECCC T ss_conf 88945132678997987999899985888646578 No 33 >cd05041 PTKc_Fes_like Catalytic Domain of Fes-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k Probab=98.90 E-value=5.8e-09 Score=88.64 Aligned_cols=137 Identities=17% Similarity=0.191 Sum_probs=86.9 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) |.|++||-|+||+|++++ +..||||+.+....+... -+ T Consensus 1 e~lG~G~fg~Vy~~~~~~---~~~vAvK~~~~~~~~~~~---------------------------------------~~ 38 (251) T cd05041 1 EKIGKGNFGDVYKGVLKG---KTEVAVKTCRSTLPPDLK---------------------------------------RK 38 (251) T ss_pred CCCCCCCCCEEEEEEECC---CCEEEEEEECHHCCHHHH---------------------------------------HH T ss_conf 977589884899999999---989999998620497899---------------------------------------99 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHHHHHHHHH Q ss_conf 599998898720244677664300001022--1783353002478632426773320022568---99999999999897 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQSFLLHTL 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~~~~~qi~ 279 (517) |.+|++.+.+++. |.|. +.|.-. ...-.|||||++|-.+.+.-.-.....+... ++..++.+ +.-+- T Consensus 39 ~~~E~~il~~l~H-----pnIv--~~~g~~~~~~~~~lvmEy~~~G~L~~~l~~~~~~~~~~~~~~i~~~ia~g-l~yLH 110 (251) T cd05041 39 FLQEAEILKQYDH-----PNIV--KLIGVCVQKQPIYIVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAG-MEYLE 110 (251) T ss_pred HHHHHHHHHHCCC-----CCEE--EEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHH T ss_conf 9999999985899-----9888--89789957998999998479996899997357999999999999999999-99883 Q ss_pred HCCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 44866178786228980289535743403121 Q gi|254780623|r 280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) ..|+.|.|.-|.||+++.+|.+-+-|||+... T Consensus 111 ~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~ 142 (251) T cd05041 111 SKNCIHRDLAARNCLVGENNVLKISDFGMSRE 142 (251) T ss_pred HCCCCCCCCCHHHEEECCCCCEEEEECCCCCC T ss_conf 28952786154008988999189816588604 No 34 >cd06620 PKc_MAPKK_Byr1_like Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis Probab=98.90 E-value=6.3e-09 Score=88.33 Aligned_cols=144 Identities=17% Similarity=0.264 Sum_probs=91.4 Q ss_pred HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 9867--66677888865555021288872368764031046887777889998753211468543346917999999988 Q gi|254780623|r 121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV 198 (517) Q Consensus 121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 198 (517) +.|+ +.|++||-|+||+|+-++ +|+.||+|+.+++..... .+ T Consensus 5 edy~il~~iG~G~fG~V~~a~~~~--~~~~~A~K~~~~~~~~~~---------------------------------~~- 48 (284) T cd06620 5 EDLETISDLGAGNGGSVSKVKHIP--TGTVMAKKVVHIGAKSSV---------------------------------RK- 48 (284) T ss_pred HHCEEEEEEECCCCCEEEEEEECC--CCCEEEEEEECCCCCHHH---------------------------------HH- T ss_conf 877898885128991999999879--996999999853059899---------------------------------99- Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHHHC-CCH---HHHHHHHHH Q ss_conf 788865599998898720244677664300001022--17833530024786324267733200-225---689999999 Q gi|254780623|r 199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRACG-HDL---ERLSVTLVQ 272 (517) Q Consensus 199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~~~-~d~---~~la~~l~~ 272 (517) .+.+|+..+.+++. |. |-+.|..+ .+.-.+||||++|-.+.++- +..+ .+. ..++..++. T Consensus 49 -----~~~~Ei~il~~l~h-----p~--IV~l~~~~~~~~~~~ivmEy~~~g~L~~~~--~~~~~l~e~~~~~~~~qi~~ 114 (284) T cd06620 49 -----QILRELQIMHECRS-----PY--IVSFYGAFLNENNICMCMEFMDCGSLDRIY--KKGGPIPVEILGKIAVAVVE 114 (284) T ss_pred -----HHHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHHH--HHCCCCCHHHHHHHHHHHHH T ss_conf -----99999999986799-----99--993999999899999999657999799999--86599999999999999999 Q ss_pred HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 999989744866178786228980289535743403121698 Q gi|254780623|r 273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) +....--.+|+.|-|.-|.||+++.+|.+-+.|||+.+.+.. T Consensus 115 ~l~ylH~~~~IvHRDlKp~NILl~~~~~vKl~DFG~s~~~~~ 156 (284) T cd06620 115 GLTYLYNVHRIMHRDIKPSNILVNSRGQIKLCDFGVSGELIN 156 (284) T ss_pred HHHHHHHHCCEEECCCCCCCCEECCCCCEEEEECCCCCCCCC T ss_conf 999998718986322687661077999999963877744266 No 35 >cd06614 STKc_PAK Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I Probab=98.89 E-value=6.8e-09 Score=88.08 Aligned_cols=161 Identities=17% Similarity=0.202 Sum_probs=95.7 Q ss_pred HHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 9998754047-889999998676667788886555502128887236876403104688777788999875321146854 Q gi|254780623|r 104 ARLSVASALK-APIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPS 182 (517) Q Consensus 104 v~~~ie~elg-~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~ 182 (517) .+..+..-+. .++.+.|.- -+.|+.||-|.||+|+-+. +|+.||||+.+-.- . T Consensus 4 ~~~~~~~~~~~~d~~~~Y~i-~~~iG~G~fg~Vy~a~~~~--tg~~vAiK~i~~~~----------------------~- 57 (287) T cd06614 4 LKAALKDIVSEGDPRELYDN-LEKIGEGASGEVYTATDRA--TGKEVAIKKMRLRK----------------------Q- 57 (287) T ss_pred HHHHHHHHCCCCCHHHCEEE-EEEEECCCCEEEEEEEECC--CCCEEEEEEEECCC----------------------C- T ss_conf 99999987479994156597-4798038685999999999--99899999987067----------------------4- Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHC Q ss_conf 3346917999999988788865599998898720244677664300001022178--33530024786324267733200 Q gi|254780623|r 183 MRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACG 260 (517) Q Consensus 183 ~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~ 260 (517) . ... .+.+|++.+.+++. |. |-+.|.-+.++ -.+||||++|-.+.+.-.-.... T Consensus 58 -------~----~~~------~~~~Ei~il~~l~H-----pn--IV~l~~~~~~~~~~~ivmEy~~gG~L~~~i~~~~~~ 113 (287) T cd06614 58 -------P----KKE------LIINEILIMKECKH-----PN--IVNYYDSYLVGDELWVVMEYMDGGSLTDIITQTFVR 113 (287) T ss_pred -------H----HHH------HHHHHHHHHHHCCC-----CC--CCCEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCC T ss_conf -------5----799------99999999987799-----99--991999999899999999688899289999866899 Q ss_pred CCH---HHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 225---6899999999999897448661787862289802895357434031216989 Q gi|254780623|r 261 HDL---ERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 261 ~d~---~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) .+- ..++..++.+ +.-+-..|+.|-|.-|.||+++.+|.+-+.|||+...++.. T Consensus 114 l~e~~~~~i~~qil~a-L~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~ 170 (287) T cd06614 114 MNESQIAYVCREVLQG-LEYLHSQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKE 170 (287) T ss_pred CCHHHHHHHHHHHHHH-HHHHHHCCEECCCCCHHHEEECCCCCEEEECCCCCEECCCC T ss_conf 8999999999999999-99999889440217679878989999999617775576688 No 36 >cd05113 PTKc_Btk_Bmx Catalytic Domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome. Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds Probab=98.89 E-value=1.3e-08 Score=85.82 Aligned_cols=142 Identities=15% Similarity=0.183 Sum_probs=91.7 Q ss_pred HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 9867--66677888865555021288872368764031046887777889998753211468543346917999999988 Q gi|254780623|r 121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV 198 (517) Q Consensus 121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 198 (517) ++|+ +.|+.||-|.||+|+++. ..+||||+.+++-. + T Consensus 4 ~d~~~~~~iG~G~fg~Vy~~~~~~---~~~vAvK~~~~~~~---------------------------~----------- 42 (256) T cd05113 4 RDLTFLKELGTGQFGVVKYGKWQG---QYDVAIKMIKEGSM---------------------------S----------- 42 (256) T ss_pred HHCEEEEEEECCCCEEEEEEEECC---CCEEEEEEECCCCC---------------------------C----------- T ss_conf 994980697028781999999879---97999999835889---------------------------9----------- Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHHHCCCH---HHHHHHHHHH Q ss_conf 788865599998898720244677664300001022--17833530024786324267733200225---6899999999 Q gi|254780623|r 199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRACGHDL---ERLSVTLVQS 273 (517) Q Consensus 199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~~~~d~---~~la~~l~~~ 273 (517) +-+|.+|++.+.+++. |.| =+.|.-. ...-.|||||++|-.+.+.-.-.....+. ..++..++.+ T Consensus 43 ---~~~~~~E~~~l~~l~H-----pnI--V~l~g~~~~~~~~~lv~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~ia~g 112 (256) T cd05113 43 ---EDEFIEEAKVMMKLSH-----EKL--VQLYGVCTKQRPIYIVTEYLANGCLLNYLREGLKRPTPSQLLEMCKDVCEG 112 (256) T ss_pred ---HHHHHHHHHHHHHCCC-----CCC--CCEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf ---8999999999986799-----897--609999988998999998079998899998548999999999999999999 Q ss_pred HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 99989744866178786228980289535743403121698 Q gi|254780623|r 274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) +.-+-..|+.|.|.-|.||+++.+|++-+-|||+...+.. T Consensus 113 -l~yLH~~~iiHrDlK~~NiLid~~~~~Kl~DFGls~~~~~ 152 (256) T cd05113 113 -MAYLESKQFIHRDLAARNCLVDSNGTVKVSDFGLSRYVLD 152 (256) T ss_pred -HHHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCEECCC T ss_conf -9987058943165772769888999799961688517788 No 37 >cd05114 PTKc_Tec_Rlk Catalytic Domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h Probab=98.89 E-value=3.6e-09 Score=90.22 Aligned_cols=141 Identities=20% Similarity=0.246 Sum_probs=92.1 Q ss_pred HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 9867--66677888865555021288872368764031046887777889998753211468543346917999999988 Q gi|254780623|r 121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV 198 (517) Q Consensus 121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 198 (517) ++|+ +.||+||-|.||+|+.+. +.+||||+.+++... T Consensus 4 ~d~~~~~~iG~G~fG~V~~g~~~~---~~~VAiK~l~~~~~~-------------------------------------- 42 (256) T cd05114 4 SELTFMKELGSGQFGVVHLGKWRA---QIKVAIKAINEGAMS-------------------------------------- 42 (256) T ss_pred HHEEEEEEEECCCCCEEEEEEECC---CCEEEEEEECCCCCC-------------------------------------- T ss_conf 997986897138897899999889---989999998657798-------------------------------------- Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHHHCCCHH---HHHHHHHHH Q ss_conf 788865599998898720244677664300001022--178335300247863242677332002256---899999999 Q gi|254780623|r 199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRACGHDLE---RLSVTLVQS 273 (517) Q Consensus 199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~l~~~ 273 (517) +-+|.+|++.+.+++. |.|. +.|.-. ...-.+||||++|-.+.+.-.-.....+.+ .++..+++. T Consensus 43 ---~~~~~~E~~il~~l~H-----pnIV--~~~g~~~~~~~~~iv~Ey~~~GsL~~~l~~~~~~l~~~~~~~i~~~ia~g 112 (256) T cd05114 43 ---EEDFIEEAKVMMKLSH-----PKLV--QLYGVCTQQKPLYIVTEFMENGCLLNYLRQRQGKLSKDMLLSMCQDVCEG 112 (256) T ss_pred ---HHHHHHHHHHHHHCCC-----CCCC--EEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf ---8999999999986899-----8986--09999988998999998389995899997637999999999999999999 Q ss_pred HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf 9998974486617878622898028953574340312169 Q gi|254780623|r 274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) +.-+-..|+.|.|.-|.||+++.+|.+-+-|||+...+. T Consensus 113 -l~yLH~~~ivHrDlK~~NiLl~~~~~vKl~DFGla~~~~ 151 (256) T cd05114 113 -MEYLERNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVL 151 (256) T ss_pred -HHHHHHCCEECCCCCCCEEEECCCCCEEEECCCCCCCCC T ss_conf -999987991367688300889899978994387650667 No 38 >PRK09605 O-sialoglycoprotein endopeptidase/protein kinase; Reviewed Probab=98.89 E-value=1.7e-08 Score=85.08 Aligned_cols=91 Identities=30% Similarity=0.388 Sum_probs=70.7 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEE Q ss_conf 59999889872024467766430000102217833530024786324267733200225689999999999989744866 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFF 284 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfF 284 (517) ...||+++.+.++ ..|.+|.+|.==..+..|+||||+|.++.|.-. ..+++. +......+-..|+. T Consensus 385 t~~EaR~l~r~~~-----~GV~~P~vy~vD~~~~~I~ME~I~G~~lkd~l~--------~~~~~~-iG~~i~~lH~~gIi 450 (536) T PRK09605 385 TRAEARLLSEARR-----AGVPTPIIYDIDPENKTITMEYIGGKDLKDVIS--------EELCEK-VGEMVGKLHSAGIV 450 (536) T ss_pred HHHHHHHHHHHHH-----CCCCCCEEEEEECCCCEEEEEEECCEEHHHHHH--------HHHHHH-HHHHHHHHHHCCCC T ss_conf 9999999999997-----699998489997789989999978947999974--------999999-99999999739970 Q ss_pred CCCCCCCEEEEECCCCEEEEECCHHE Q ss_conf 17878622898028953574340312 Q gi|254780623|r 285 HADLHPGNLFVDSKGYIVAVDMGITG 310 (517) Q Consensus 285 HaDPHpGNi~v~~dg~i~~lDfG~vg 310 (517) |+|+.+-|+++. ++++++||||+-. T Consensus 451 HGDLTTsNiil~-~~~i~lIDFGLs~ 475 (536) T PRK09605 451 HGDLTTSNIIVR-SDRTYLIDFGLGK 475 (536) T ss_pred CCCCCHHHEEEE-CCCEEEEECCCCC T ss_conf 567732407887-9889999799877 No 39 >cd05059 PTKc_Tec_like Catalytic Domain of Tec-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows Probab=98.89 E-value=4.2e-09 Score=89.68 Aligned_cols=140 Identities=17% Similarity=0.237 Sum_probs=90.1 Q ss_pred HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 9867--66677888865555021288872368764031046887777889998753211468543346917999999988 Q gi|254780623|r 121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV 198 (517) Q Consensus 121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 198 (517) ++|+ +.||+||-|.||+|.+++ +.+||||+.+++... T Consensus 4 ~d~~~~~~iG~G~fg~V~~~~~~~---~~~vAvK~l~~~~~~-------------------------------------- 42 (256) T cd05059 4 SELTFLKELGSGQFGVVRLGKWRG---KIDVAIKMIREGAMS-------------------------------------- 42 (256) T ss_pred HHCEEEEEEECCCCCEEEEEEECC---CCEEEEEEECCCCCC-------------------------------------- T ss_conf 996984597048886999999879---989999998867789-------------------------------------- Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCC--HHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHHH Q ss_conf 7888655999988987202446776643000010--221783353002478632426773320022568---99999999 Q gi|254780623|r 199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDW--NRTERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQS 273 (517) Q Consensus 199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~--~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~~ 273 (517) |-+|.+|++.+.+++. |.| =+.|. ...+.-.|||||++|-.+.+.-.-.....+... ++..++++ T Consensus 43 ---~~~f~~E~~~l~~l~H-----pnI--v~~~g~~~~~~~~~lvmEy~~~G~L~~~l~~~~~~~~~~~~~~i~~~ia~g 112 (256) T cd05059 43 ---EDDFIEEAKVMMKLSH-----PNL--VQLYGVCTKQRPIFIVTEYMANGCLLNFLRQRRGKFGTEWLLDMCSDVCEA 112 (256) T ss_pred ---HHHHHHHHHHHHHCCC-----CCE--EEEEEEEEECCEEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf ---8999999999985899-----888--159999988998899997069897999998668999999999999999999 Q ss_pred HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC Q ss_conf 999897448661787862289802895357434031216 Q gi|254780623|r 274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL 312 (517) Q Consensus 274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l 312 (517) +.-+-..|+.|.|.-|.||+++.++.+-+-|||+...+ T Consensus 113 -l~yLH~~~ivHrDlK~~NiLl~~~~~~Ki~DFGls~~~ 150 (256) T cd05059 113 -MEYLESNSFIHRDLAARNCLVGEDNVVKVSDFGLARYV 150 (256) T ss_pred -HHHHHHCCEECCCCCCCEEEECCCCCEEEEECCCCCCC T ss_conf -99998799167867806389999997999866764276 No 40 >cd06623 PKc_MAPKK_plant_like Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania m Probab=98.89 E-value=2.2e-09 Score=91.96 Aligned_cols=141 Identities=18% Similarity=0.271 Sum_probs=90.0 Q ss_pred HHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 867--666778888655550212888723687640310468877778899987532114685433469179999999887 Q gi|254780623|r 122 EFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT 199 (517) Q Consensus 122 ~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 199 (517) .|+ +.|+.|+-|+||+|+-+. +|+.||||+...... .+... T Consensus 2 d~~~~~~iG~G~fg~Vy~~~~~~--~~~~vAvK~i~~~~~---------------------------------~~~~~-- 44 (264) T cd06623 2 DLERVKVLGQGSSGVVYKVRHKP--TGKIYALKKIHVDGD---------------------------------EEFRK-- 44 (264) T ss_pred CCEEEEEEECCCCEEEEEEEECC--CCCEEEEEEECCCCC---------------------------------HHHHH-- T ss_conf 97385898317893999999989--998999999821469---------------------------------78999-- Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 88865599998898720244677664300001022178335300247863242677332002256899999999999897 Q gi|254780623|r 200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL 279 (517) Q Consensus 200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~ 279 (517) .+.+|++.+..++. ..-|.+=.++.+ .+.-.|||||++|-.+.+.- ...+ .+.+..+..++.|+. T Consensus 45 ----~~~~E~~il~~l~H----pnIV~~~~~~~~-~~~~~lvmEy~~~G~L~~~i--~~~~----~~~e~~~~~~~~qi~ 109 (264) T cd06623 45 ----QLLRELKTLRSCES----PYVVKCYGAFYK-EGEISIVLEYMDGGSLADLL--KKVG----KIPEPVLAYIARQIL 109 (264) T ss_pred ----HHHHHHHHHHHCCC----CCCCEEEEEEEE-CCEEEEEEECCCCCCHHHHH--HHCC----CCCHHHHHHHHHHHH T ss_conf ----99999999986799----988829999988-99999999789998499999--7348----989999999999999 Q ss_pred -------H-CCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf -------4-4866178786228980289535743403121698 Q gi|254780623|r 280 -------R-DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 280 -------~-~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) . .|+.|-|.-|.||+++.+|.+-+.|||+...+++ T Consensus 110 ~gl~yLH~~~~IiHRDlKp~NILl~~~~~iKl~DFG~a~~~~~ 152 (264) T cd06623 110 KGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLEN 152 (264) T ss_pred HHHHHHHHCCCEECCCCCHHHEEECCCCCEEEECCCCCEECCC T ss_conf 9999998708988044788996988999999921878858678 No 41 >cd06605 PKc_MAPKK Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residu Probab=98.88 E-value=2.1e-08 Score=84.37 Aligned_cols=142 Identities=19% Similarity=0.235 Sum_probs=88.0 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|++||-|.||+|+-+. +|+.||||+.+....... ... T Consensus 7 ~~iG~G~fg~Vy~a~~~~--~g~~vAvK~i~~~~~~~~---------------------------------~~~------ 45 (265) T cd06605 7 GELGAGNSGVVSKVRHRP--TGKIMAVKTIRLEINEAI---------------------------------QKQ------ 45 (265) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECHHCCHHH---------------------------------HHH------ T ss_conf 881118680999999989--998999999842059899---------------------------------999------ Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHHHHHHHHH Q ss_conf 599998898720244677664300001022--1783353002478632426773320022568---99999999999897 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQSFLLHTL 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~~~~~qi~ 279 (517) +.+|++.+..+. .|.|. +.|.-+ ++.-.+||||++|-.+.+.-.-.....+... ++..++.+. .-+- T Consensus 46 ~~~Ei~~l~~l~-----HpnIv--~~~~~~~~~~~~~ivmEy~~~g~L~~~~~~~~~~~~e~~~~~i~~qi~~~l-~ylH 117 (265) T cd06605 46 ILRELDILHKCN-----SPYIV--GFYGAFYNNGDISICMEYMDGGSLDKILKEVQGRIPERILGKIAVAVLKGL-TYLH 117 (265) T ss_pred HHHHHHHHHHCC-----CCCCC--EEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHH-HHHH T ss_conf 999999998679-----98989--098999989988999926899869999987489999999999999999999-9998 Q ss_pred H-CCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 4-48661787862289802895357434031216989 Q gi|254780623|r 280 R-DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 280 ~-~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) . .|+.|-|.-|.||+++.+|.+-+.|||+...+... T Consensus 118 ~~~~iiHRDiKp~NILl~~~g~iKl~DFG~s~~~~~~ 154 (265) T cd06605 118 EKHKIIHRDVKPSNILVNSRGEIKLCDFGVSGQLVNS 154 (265) T ss_pred HCCCEEEEEECCCCCCCCCCCCEEECCCCCCEECCCC T ss_conf 7099873210565521889999898437342241578 No 42 >cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown. Probab=98.88 E-value=1.4e-08 Score=85.74 Aligned_cols=185 Identities=15% Similarity=0.171 Sum_probs=107.1 Q ss_pred HHHHHHHHHHHHHHEECCCC----CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 66778888655550212888----72368764031046887777889998753211468543346917999999988788 Q gi|254780623|r 126 PIAAASIAQVHPAVVHDING----YRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKM 201 (517) Q Consensus 126 PlasASiaQVh~A~l~d~~~----g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 201 (517) +|++|==|-||.|.-.++.. ++++||||-|.+...- +....-..--.++.......+...++... T Consensus 4 ~I~tGKEA~Vy~a~~~~~~~~~~~~~~~AvKiyrt~~~~F-----k~~~~Yv~gd~Rf~~~~~~~~~r~~v~~W------ 72 (197) T cd05146 4 CISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEF-----KNRDKYIKDDYRFKDRFSKLNPRKIIRMW------ 72 (197) T ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECCCEEE-----CCHHHHHCCCHHHHCCCCCCCHHHHHHHH------ T ss_conf 6414636258999768876544456506899864341044-----16677506664233055555988999999------ Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECC--CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 86559999889872024467766430000102217833530024--7863242677332002256899999999999897 Q gi|254780623|r 202 EMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWI--DGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL 279 (517) Q Consensus 202 ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i--~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~ 279 (517) =..|-+|+.++.+ .++.||+++ .+.++||+|||| +|.+...+...+....+...+-..+++...++.- T Consensus 73 ---a~kEf~nL~rl~~-----~Gv~vP~Pi--~~~~~vlvMe~ig~~g~pap~L~d~~~~~~~~~~~~~~~i~~i~~l~~ 142 (197) T cd05146 73 ---AEKEMHNLKRMQK-----AGIPCPEVV--VLKKHVLVMSFIGDDQVPAPKLKDAKLNDEEMKNAYYQVLSMMKQLYK 142 (197) T ss_pred ---HHHHHHHHHHHHH-----CCCCCCCEE--EECCCEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf ---9999999999998-----599999846--752988999983699970743101678848899999999999999999 Q ss_pred HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHH Q ss_conf 448661787862289802895357434031216989999999766999718727899999 Q gi|254780623|r 280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVH 339 (517) Q Consensus 280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l 339 (517) ..|..|||.-+=||++. ++++++||||.+-..+-..... +..+|...+..-+ T Consensus 143 ~~gLVHgDlSEyNil~~-~~~~~iID~~QaV~~~hp~a~e-------~L~RDi~ni~~fF 194 (197) T cd05146 143 ECNLVHADLSEYNMLWH-DGKVWFIDVSQSVEPTHPHGLE-------FLFRDCRNVIQFF 194 (197) T ss_pred HCCCEECCCCHHHEEEC-CCCEEEEECCCCCCCCCCCHHH-------HHHHHHHHHHHHH T ss_conf 83950124103301642-7987999677401578978899-------9999998999985 No 43 >cd06659 STKc_PAK6 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase Probab=98.88 E-value=1.2e-08 Score=86.16 Aligned_cols=161 Identities=19% Similarity=0.213 Sum_probs=99.1 Q ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 98999998754047889999998676667788886555502128887236876403104688777788999875321146 Q gi|254780623|r 100 PTNTARLSVASALKAPIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKL 179 (517) Q Consensus 100 ~~~~v~~~ie~elg~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~ 179 (517) .|..+-+.+-.. | ++.+.|+..+ -|+.||-|.||+|+-+. +|+.||||+.+-. . T Consensus 5 ~~~~~~~~~~~~-~-dp~~~fe~~~-~iG~G~fg~V~~a~~k~--tg~~vAiK~i~~~--------------------~- 58 (297) T cd06659 5 QFKAALRMVVDQ-G-DPRSLLENYI-KIGEGSTGIVCIAREKH--SGRQVAVKMMDLR--------------------K- 58 (297) T ss_pred HHHHHHHHHCCC-C-CHHHHCCCCE-EECCCCCCEEEEEEECC--CCCEEEEEEEECC--------------------C- T ss_conf 999999987489-9-9689702176-96038882999999899--9989999998605--------------------5- Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHH Q ss_conf 8543346917999999988788865599998898720244677664300001022178--33530024786324267733 Q gi|254780623|r 180 LPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLR 257 (517) Q Consensus 180 ~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~ 257 (517) . . -... +.+|.+.+.++.. |.| -+.|.-+.++ -.|||||++|-.+.++- . T Consensus 59 -~-----~-------~~~~------~~~Ei~il~~l~H-----pnI--v~l~~~~~~~~~~~ivmEy~~gg~L~~~~--~ 110 (297) T cd06659 59 -Q-----Q-------RREL------LFNEVVIMRDYQH-----QNV--VEMYKSYLVGEELWVLMEFLQGGALTDIV--S 110 (297) T ss_pred -C-----C-------HHHH------HHHHHHHHHHCCC-----CCC--CEEEEEEEECCEEEEEEECCCCCCHHHHH--H T ss_conf -2-----0-------4899------9999999997799-----899--91999999899999999678989389998--7 Q ss_pred HHCCCHHH---HHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 20022568---99999999999897448661787862289802895357434031216989 Q gi|254780623|r 258 ACGHDLER---LSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 258 ~~~~d~~~---la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) ....+-+. ++..++.+ +.-+-..|+.|-|.-|.||+++.+|++-+.|||+...++.+ T Consensus 111 ~~~l~e~~~~~i~~qil~a-L~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFG~a~~~~~~ 170 (297) T cd06659 111 QTRLNEEQIATVCESVLQA-LCYLHSQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKD 170 (297) T ss_pred CCCCCHHHHHHHHHHHHHH-HHHHHHCCEEECCCCCHHEEECCCCCEEEEECCCCEECCCC T ss_conf 2899999999999999999-99999789664668700079989998999965784442688 No 44 >cd05095 PTKc_DDR2 Catalytic Domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin domain receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit Probab=98.87 E-value=2.3e-08 Score=83.96 Aligned_cols=145 Identities=17% Similarity=0.217 Sum_probs=88.8 Q ss_pred HHHHHHHHHHHHHHHHHHEECCC--------------CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 86766677888865555021288--------------8723687640310468877778899987532114685433469 Q gi|254780623|r 122 EFDDPIAAASIAQVHPAVVHDIN--------------GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLC 187 (517) Q Consensus 122 ~fdePlasASiaQVh~A~l~d~~--------------~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~ 187 (517) .|.+.|++|+-|.||+|+++... .+.-||||..++...+ T Consensus 8 ~~~~~lG~G~FG~Vy~~~~~g~~~~~~~~~~~~~~~~~~~~VAvK~l~~~~~~--------------------------- 60 (296) T cd05095 8 TFKEKLGEGQFGEVHLCEAEGMQKFMDKDFSLDVSENQPVLVAVKMLRADANK--------------------------- 60 (296) T ss_pred EEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCH--------------------------- T ss_conf 88479703878588982883754112221123456777548999996676896--------------------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC---CCCEEEEECCCCCCCCHHHHHH-HH---- Q ss_conf 179999999887888655999988987202446776643000010221---7833530024786324267733-20---- Q gi|254780623|r 188 FSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT---ERDVITMEWIDGVKISDTEKLR-AC---- 259 (517) Q Consensus 188 ~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s---t~~VLvmE~i~G~~i~d~~~l~-~~---- 259 (517) ...-+|.+|++.+.+++. +.|. +.| ..| ..-.|||||++|-.+.+.-.-. .. T Consensus 61 ------------~~~~~f~~Ei~il~~l~H-----pNIV--~~~-g~~~~~~~~~lV~Ey~~~GsL~~~L~~~~~~~~~~ 120 (296) T cd05095 61 ------------NARNDFLKEIKIMSRLKD-----PNII--RLL-AVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAA 120 (296) T ss_pred ------------HHHHHHHHHHHHHHHCCC-----CCCC--CEE-EEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCC T ss_conf ------------799999999999986899-----4989--798-99988995799998169995999998537554432 Q ss_pred -----CCC---HHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf -----022---5689999999999989744866178786228980289535743403121698 Q gi|254780623|r 260 -----GHD---LERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 260 -----~~d---~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) ..+ +-.++..++... .-+-..++.|.|..|.||+++.++.+-+-|||+...+.. T Consensus 121 ~~~~~~l~~~~~~~i~~qia~gl-~yLh~~~ivHrDlK~~NILl~~~~~~Ki~DFGls~~~~~ 182 (296) T cd05095 121 KSDVPTVSYSNLIFMASQIASGM-KYLSSLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYS 182 (296) T ss_pred CCCCCCCCHHHHHHHHHHHHHHH-HHHHCCCEECCCCCCCEEEECCCCCEEEEECCCCCCCCC T ss_conf 22455568999999999999999-987119877575661337987999899984535513678 No 45 >cd07841 STKc_CDK7 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7 subfamily. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates Probab=98.87 E-value=7.1e-09 Score=87.94 Aligned_cols=140 Identities=21% Similarity=0.276 Sum_probs=85.4 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-|++||-|+|++|+-+. +|+.||||+.+.+-...-... ..... T Consensus 6 ~~iG~G~fg~V~~~~~~~--~~~~vAiK~i~~~~~~~~~~~-----------------------------~~~~~----- 49 (298) T cd07841 6 KKLGEGTYAVVYKARDKE--TGRIVAIKKIKLGERKEAKDG-----------------------------INFTA----- 49 (298) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHHHHHHHHH-----------------------------HHHHH----- T ss_conf 495327283999999899--998999999973143456677-----------------------------67899----- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH--- Q ss_conf 59999889872024467766430000102217--8335300247863242677332002256899999999999897--- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL--- 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~--- 279 (517) .+|.+.+..+.. +. |-+.|.-+.+ .-.|||||++|- +.+. ++..+ ..+.+.-+..|++|++ T Consensus 50 -~rEi~~l~~l~h-----pn--Iv~~~~~~~~~~~~~iVmEy~~g~-L~~~--l~~~~---~~l~e~~~~~~~~Qil~al 115 (298) T cd07841 50 -LREIKLLQELKH-----PN--IIGLLDVFGHKSNINLVFEFMETD-LEKV--IKDKS---IVLTPADIKSYMLMTLRGL 115 (298) T ss_pred -HHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCC-HHHH--HHHCC---CCCCHHHHHHHHHHHHHHH T ss_conf -999999997599-----99--664999998899999999578998-8999--87238---8999999999999999999 Q ss_pred ----HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf ----44866178786228980289535743403121698 Q gi|254780623|r 280 ----RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 280 ----~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) ..|+.|-|.-|.||+++.+|++-+.|||+...+.. T Consensus 116 ~ylH~~~iiHRDIKPeNILl~~~g~vKl~DFG~a~~~~~ 154 (298) T cd07841 116 EYLHSNWILHRDLKPNNLLIASDGVLKLADFGLARSFGS 154 (298) T ss_pred HHHHHCCEEECCCCHHHEEECCCCCEEEEECCEEEECCC T ss_conf 999978924031577885687899989836332356578 No 46 >cd05079 PTKc_Jak1_rpt2 Catalytic (Repeat 2) Domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a Probab=98.86 E-value=2.2e-08 Score=84.20 Aligned_cols=147 Identities=16% Similarity=0.204 Sum_probs=91.8 Q ss_pred HHHHHHHHHHHHHHHEE--CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 66677888865555021--2888723687640310468877778899987532114685433469179999999887888 Q gi|254780623|r 125 DPIAAASIAQVHPAVVH--DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME 202 (517) Q Consensus 125 ePlasASiaQVh~A~l~--d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E 202 (517) +.|++|+-|.||+|+++ +..+|+.||||+.++...+. ... T Consensus 10 ~~iG~G~fG~V~~~~~~~~~~~~~~~vAvK~l~~~~~~~-----------------------------~~~--------- 51 (284) T cd05079 10 RDLGEGHFGKVELCRYDPEGDNTGELVAVKSLKPENGGE-----------------------------HIA--------- 51 (284) T ss_pred EEECCCCCEEEEEEEEECCCCCCCCEEEEEEECCCCCHH-----------------------------HHH--------- T ss_conf 596137083999858864427779399999984212867-----------------------------899--------- Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC-EEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHHHHHHHH Q ss_conf 655999988987202446776643000010221783-353002478632426773320022568---9999999999989 Q gi|254780623|r 203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD-VITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQSFLLHT 278 (517) Q Consensus 203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~-VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~~~~~qi 278 (517) +|.+|++.+..++. ..-|.+-.+..+-++.. .|||||++|-++.+.-.-.....+... ++..++.. +.-+ T Consensus 52 -~~~~E~~il~~l~H----pNIv~~~g~~~~~~~~~~~lVmEy~~~GsL~~~l~~~~~~l~~~~~~~~~~qia~g-l~yL 125 (284) T cd05079 52 -DLKKEIEILRNLYH----ENIVKYKGICTEEGGNGIKLIMEFLPSGSLKEYLPRNKNKINLKQLLKYAVQICKG-MDYL 125 (284) T ss_pred -HHHHHHHHHHHCCC----CCCCEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHH T ss_conf -99999999986799----88840865783379977999999389994899986346899999999999999999-9987 Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 7448661787862289802895357434031216989 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) -..|+.|.|.-|.||+++.++.+-+-|||+...+... T Consensus 126 H~~~ivHrDlK~~NiLl~~~~~~Kl~DFGla~~~~~~ 162 (284) T cd05079 126 GSRQYVHRDLAARNVLVENERMVKIGDFGLTKAIKTD 162 (284) T ss_pred HHCCEECCCCCCCEEEECCCCCEEEEECCCCEECCCC T ss_conf 0398364777622389879997899736665465789 No 47 >cd05085 PTKc_Fer Catalytic Domain of the Protein Tyrosine Kinase, Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c Probab=98.86 E-value=1.3e-08 Score=85.92 Aligned_cols=138 Identities=16% Similarity=0.192 Sum_probs=87.0 Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67788886555502128887236876403104688777788999875321146854334691799999998878886559 Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR 206 (517) Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~ 206 (517) |++|+-|+||+|++++ +..||||+.+....+..+ ..|. T Consensus 3 iG~G~fg~Vy~g~~~~---~~~VAvK~~~~~~~~~~~---------------------------------------~~f~ 40 (250) T cd05085 3 LGKGNFGEVFKGTLKD---KTPVAVKTCKEDLPQELK---------------------------------------IKFL 40 (250) T ss_pred EEECCCCEEEEEEECC---CCEEEEEEECCCCCHHHH---------------------------------------HHHH T ss_conf 1008993899999889---999999998943786899---------------------------------------9999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHHHCCCHHHH---HHHHHHHHHHHHHHC Q ss_conf 999889872024467766430000102217--833530024786324267733200225689---999999999989744 Q gi|254780623|r 207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRACGHDLERL---SVTLVQSFLLHTLRD 281 (517) Q Consensus 207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~~~~d~~~l---a~~l~~~~~~qi~~~ 281 (517) +|++.+.+++. |.| -+.|.-..+ .-.|||||++|-.+.+.-.-.....+.+.+ +..++.+ +.-+-.. T Consensus 41 ~E~~il~~l~H-----pnI--v~l~g~~~~~~~~~iv~Ey~~~g~L~~~l~~~~~~l~~~~~~~~~~~ia~g-l~yLH~~ 112 (250) T cd05085 41 SEARILKQYDH-----PNI--VKLIGVCTQRQPIYIVMELVPGGDFLSFLRKKKDELKTKQLVKFALDAAAG-MAYLESK 112 (250) T ss_pred HHHHHHHHCCC-----CCE--EEEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHHHC T ss_conf 99999986799-----998--319999988998999997589982899997468999999999999999999-9998429 Q ss_pred CEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 866178786228980289535743403121698 Q gi|254780623|r 282 GFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 282 GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) |+.|.|.-|.||+++.++.+-+-|||+....+. T Consensus 113 ~iiHrDlK~~NiLv~~~~~~Kl~DFGls~~~~~ 145 (250) T cd05085 113 NCIHRDLAARNCLVGENNVLKISDFGMSRQEDD 145 (250) T ss_pred CCCCCCCCCCCEEECCCCCEEEEECCCCEECCC T ss_conf 964475374636688999689996677887799 No 48 >cd06658 STKc_PAK5 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is Probab=98.86 E-value=1.5e-08 Score=85.44 Aligned_cols=163 Identities=19% Similarity=0.249 Sum_probs=100.1 Q ss_pred CHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 98999998754047-88999999867666778888655550212888723687640310468877778899987532114 Q gi|254780623|r 100 PTNTARLSVASALK-APIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEK 178 (517) Q Consensus 100 ~~~~v~~~ie~elg-~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~ 178 (517) +-++-+..++.-++ .++.+.|..++ -|+.||-|.||+|+-+. +|+.||||+..- .. T Consensus 3 ~~~~~~~~~~~~~~~gd~~~~~~~l~-~IG~G~fg~V~~a~~~~--tg~~vAiK~i~~--------------------~~ 59 (292) T cd06658 3 SHEQFRAALQLVVSPGDPREYLDSFI-KIGEGSTGIVCIATEKH--TGKQVAVKKMDL--------------------RK 59 (292) T ss_pred CHHHHHHHHHHHCCCCCHHHHCCCCE-EECCCCCCEEEEEEECC--CCCEEEEEEEEC--------------------CC T ss_conf 77999999983549999489674077-96227781999999899--998999999851--------------------66 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHH Q ss_conf 685433469179999999887888655999988987202446776643000010221783--353002478632426773 Q gi|254780623|r 179 LLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKL 256 (517) Q Consensus 179 ~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l 256 (517) .. -... +.+|...+..+.. |.| =+.|.-+.+.+ .+||||++|-.+.++- T Consensus 60 -------~~-------~~~~------~~~Ei~il~~l~H-----pnI--V~l~~~~~~~~~~yiVmE~~~gG~L~~~i-- 110 (292) T cd06658 60 -------QQ-------RREL------LFNEVVIMRDYHH-----ENV--VDMYNSYLVGDELWVVMEFLEGGALTDIV-- 110 (292) T ss_pred -------CC-------HHHH------HHHHHHHHHHCCC-----CCC--CEEEEEEEECCEEEEEEECCCCCCHHHHH-- T ss_conf -------32-------3999------9999999986799-----898--91999999899999999898999177898-- Q ss_pred HHHCCCHHHH---HHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 3200225689---9999999999897448661787862289802895357434031216989 Q gi|254780623|r 257 RACGHDLERL---SVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 257 ~~~~~d~~~l---a~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) .....+-+.+ +..++.+ +.-+-..|+.|-|.-|.||+++.+|++-+.|||+...++.. T Consensus 111 ~~~~l~e~~~~~i~~qil~a-L~yLH~~~IiHRDlKpeNILl~~~g~iKL~DFGla~~~~~~ 171 (292) T cd06658 111 THTRMNEEQIATVCLSVLRA-LSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKE 171 (292) T ss_pred HCCCCCHHHHHHHHHHHHHH-HHHHHHCCEEECCCCHHHEEECCCCCEEEEECCCCEECCCC T ss_conf 72899999999999999999-99999789353637715367868998999726275565777 No 49 >cd06628 STKc_MAPKKK_Byr2_like Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important Probab=98.85 E-value=3.7e-09 Score=90.18 Aligned_cols=147 Identities=20% Similarity=0.274 Sum_probs=88.6 Q ss_pred HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 66778888655550212888723687640310468877778899987532114685433469179999999887888655 Q gi|254780623|r 126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL 205 (517) Q Consensus 126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~ 205 (517) =|+.||-|.||+|+-+. +|+.||||+.+-.-. ..+..+...++.+ .+ T Consensus 7 ~lG~G~fg~Vy~~~~~~--~g~~vAiK~~~~~~~-------------------------~~~~~~~~~~~~~------~~ 53 (267) T cd06628 7 LIGSGSFGSVYLGMNAH--SGELMAVKQVEIPSN-------------------------SIGVQDRKRKMLD------AL 53 (267) T ss_pred EEEECCCEEEEEEEECC--CCCEEEEEEEEECCC-------------------------CCHHHHHHHHHHH------HH T ss_conf 88207481999999889--998999999950455-------------------------5026788999999------99 Q ss_pred HHHHHHHHHHHCCCCCCCCC-CCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH------ Q ss_conf 99998898720244677664-30000102217833530024786324267733200225689999999999989------ Q gi|254780623|r 206 RLEAAAFSEMAENTVKDQGF-RVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT------ 278 (517) Q Consensus 206 ~~Ea~n~~~~~~~~~~~~~v-~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi------ 278 (517) .+|+..+.+++. |.| ..=.++. -...-.++|||++|-.+.+.- +..+ .+.+..+..|+.|+ T Consensus 54 ~~E~~il~~l~H-----pnIv~~~~~~~-~~~~~~iv~Ey~~gg~L~~~l--~~~~----~l~e~~~~~~~~qil~gL~y 121 (267) T cd06628 54 QREINLLKELHH-----ENIVQYLGSSQ-DAGHLNIFLEYVPGGSVAALL--NNYG----AFEESLVRNFVRQILKGLNY 121 (267) T ss_pred HHHHHHHHHCCC-----CCCCCEEEEEE-ECCEEEEEEEECCCCCHHHHH--HHCC----CCCHHHHHHHHHHHHHHHHH T ss_conf 999999987799-----89992999997-899999999903969699999--8659----99999999999999999999 Q ss_pred -HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHH Q ss_conf -744866178786228980289535743403121698999 Q gi|254780623|r 279 -LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRER 317 (517) Q Consensus 279 -~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r 317 (517) -..|+.|-|.-|+||+++.+|.+-+.|||+...+++... T Consensus 122 LH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~ 161 (267) T cd06628 122 LHNRGIIHRDIKGANILVDNKGGIKISDFGISKKLEANSL 161 (267) T ss_pred HHHCCCEEEECCHHHEEECCCCCEEEEECCCCEECCCCCC T ss_conf 9868904321677776688999899995778747568863 No 50 >cd05067 PTKc_Lck_Blk Catalytic Domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk. Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr Probab=98.85 E-value=1.6e-08 Score=85.24 Aligned_cols=144 Identities=15% Similarity=0.227 Sum_probs=92.0 Q ss_pred HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 99867--6667788886555502128887236876403104688777788999875321146854334691799999998 Q gi|254780623|r 120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ 197 (517) Q Consensus 120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 197 (517) ++.++ +.|++|+.|.||+|.+++ +++||||+.+++-. +. T Consensus 5 ~~~~~~~~~iG~G~fg~Vy~~~~~~---~~~VAvK~l~~~~~---------------------------~~--------- 45 (260) T cd05067 5 RETLKLVKKLGAGQFGEVWMGYYNN---HTKVAIKSLKEGTM---------------------------SP--------- 45 (260) T ss_pred HHHEEEEEEEECCCCCEEEEEEECC---CCEEEEEEECCCCC---------------------------CH--------- T ss_conf 7997973598318785999999889---98999999896789---------------------------99--------- Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCH-HCCCCEEEEECCCCCCCCHHHHHHH-HCCCHH---HHHHHHHH Q ss_conf 878886559999889872024467766430000102-2178335300247863242677332-002256---89999999 Q gi|254780623|r 198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWN-RTERDVITMEWIDGVKISDTEKLRA-CGHDLE---RLSVTLVQ 272 (517) Q Consensus 198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~-~st~~VLvmE~i~G~~i~d~~~l~~-~~~d~~---~la~~l~~ 272 (517) -.|.+|++.+.+++. |.|. +.|.- ...+-.|||||++|-.+.+.-.... ...... .++..+++ T Consensus 46 -----~~f~~E~~il~~l~H-----pnIV--~~~g~~~~~~~~lv~Ey~~~G~L~~~l~~~~~~~l~~~~~~~i~~qia~ 113 (260) T cd05067 46 -----EAFLAEANLMKQLQH-----ERLV--RLYAVVTQEPIYIVTEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAE 113 (260) T ss_pred -----HHHHHHHHHHHHCCC-----CCCC--CEEEEEECCCEEEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH T ss_conf -----999999999986899-----7898--1999995696399999069988999983067899999999999999999 Q ss_pred HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 9999897448661787862289802895357434031216989 Q gi|254780623|r 273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) + +.-+-..|+.|.|.-|.||+++.++.+.+-|||+...++.. T Consensus 114 g-l~yLH~~~ivHrDlKp~NILl~~~~~~Kl~DFGls~~~~~~ 155 (260) T cd05067 114 G-MAYIERKNYIHRDLRAANILVSETLCCKIADFGLARIIEDN 155 (260) T ss_pred H-HHHHHHCCEECCCCCCCEEEECCCCCEEEEECCCCEECCCC T ss_conf 9-99997489760546621189869998897103550673688 No 51 >smart00221 STYKc Protein kinase; unclassified specificity. Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Probab=98.85 E-value=1.3e-08 Score=85.93 Aligned_cols=143 Identities=15% Similarity=0.193 Sum_probs=92.3 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.++-|.||+|+... +|+.||||+.++.-.. +. .-. T Consensus 5 ~~iG~G~fg~Vy~~~~~~--~~~~vAiK~i~~~~~~---------------------------------~~------~~~ 43 (225) T smart00221 5 KKLGEGAFGKVYLARDKG--TGELVAVKVLKKEKTE---------------------------------KQ------REE 43 (225) T ss_pred EEEECCCCCEEEEEEECC--CCCEEEEEEEEHHCCH---------------------------------HH------HHH T ss_conf 998328892999999999--9989999998354098---------------------------------89------999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCH---HHHHHHHHHHHHHHHH Q ss_conf 599998898720244677664300001022178--33530024786324267733200225---6899999999999897 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDL---ERLSVTLVQSFLLHTL 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~---~~la~~l~~~~~~qi~ 279 (517) +.+|++.+.+++. |. |-++|.-+.++ -.+||||++|-.+.+.-.-.....+. ..++..++.+ +.-+- T Consensus 44 ~~~E~~il~~l~h-----pn--Iv~~~~~~~~~~~~~ivmEy~~~G~L~~~l~~~~~~~~~~~~~~~~~qi~~g-l~~lH 115 (225) T smart00221 44 FLREIRILKKLKH-----PN--IVKLYGVFEDPEPLYLVMEYCEGGDLFDYLRKKGGKLSEEEARFYLRQILEA-LEYLH 115 (225) T ss_pred HHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHH T ss_conf 9999999997799-----89--9818779878999999998779990899999769999999999999999999-99999 Q ss_pred HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHH Q ss_conf 4486617878622898028953574340312169899 Q gi|254780623|r 280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRE 316 (517) Q Consensus 280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~ 316 (517) ..|+.|-|.-|.||+++.+|.+-+.|||+...+++.. T Consensus 116 ~~~iiHrDiKp~NIl~~~~~~~kl~DFG~a~~~~~~~ 152 (225) T smart00221 116 SLGIVHRDLKPENILLGMDGLVKLADFGLARFIHRDL 152 (225) T ss_pred HCCEEECCCCHHHEEECCCCCEEEEECCCCEECCCCC T ss_conf 7996745277788799899989999667777867897 No 52 >cd05096 PTKc_DDR1 Catalytic Domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin domain receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k Probab=98.85 E-value=2.3e-08 Score=83.99 Aligned_cols=144 Identities=19% Similarity=0.239 Sum_probs=90.8 Q ss_pred HHHHHHHHHHHHHHHHHHEECCC--------------CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 86766677888865555021288--------------8723687640310468877778899987532114685433469 Q gi|254780623|r 122 EFDDPIAAASIAQVHPAVVHDIN--------------GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLC 187 (517) Q Consensus 122 ~fdePlasASiaQVh~A~l~d~~--------------~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~ 187 (517) .|.+.|++|+-|+||+|++++.+ .+..||||+.+++..+. T Consensus 8 ~~~~~iG~G~FG~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~VAvK~l~~~~~~~-------------------------- 61 (304) T cd05096 8 LFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKN-------------------------- 61 (304) T ss_pred EEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCHH-------------------------- T ss_conf 881088138587999989889864420002222346872689999977657867-------------------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHHH------ Q ss_conf 17999999988788865599998898720244677664300001022--1783353002478632426773320------ Q gi|254780623|r 188 FSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRAC------ 259 (517) Q Consensus 188 ~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~~------ 259 (517) ..-+|.+|++.+.+++. |. |=+.|.-. ...-.|||||++|-.+.+.-.-+.. T Consensus 62 -------------~~~~f~~Ei~il~~l~H-----pN--IV~l~G~~~~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~ 121 (304) T cd05096 62 -------------ARNDFLKEVKILSRLKD-----PN--IIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEEN 121 (304) T ss_pred -------------HHHHHHHHHHHHHHCCC-----CC--EEEEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCCC T ss_conf -------------99999999999986699-----99--74289999889998999974789958999976344310034 Q ss_pred ------------CCC---HHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC Q ss_conf ------------022---56899999999999897448661787862289802895357434031216 Q gi|254780623|r 260 ------------GHD---LERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL 312 (517) Q Consensus 260 ------------~~d---~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l 312 (517) ..+ +-.+|..++...- =+-..++.|.|.-|.||+++.++.+-+-|||+...+ T Consensus 122 ~~~~~~~~~~~~~l~~~~~l~ia~qia~gl~-yLh~~~iiHrDLK~~NILl~~~~~~Kl~DFGlsr~~ 188 (304) T cd05096 122 GNDAVPPAHCLPAISYSSLLHVALQIASGMK-YLSSLNFVHRDLATRNCLVGENLTIKIADFGMSRNL 188 (304) T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHCCCEEECCCCHHCEEECCCCCEEEECCCCCEEC T ss_conf 5544453334455789999999999999878-987299882756652068889998999515055056 No 53 >cd05065 PTKc_EphR_B Catalytic Domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr Probab=98.85 E-value=1.7e-08 Score=85.01 Aligned_cols=147 Identities=14% Similarity=0.165 Sum_probs=94.7 Q ss_pred HHHH--HHHHHHHHHHHHHHHEECC-CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 9867--6667788886555502128-887236876403104688777788999875321146854334691799999998 Q gi|254780623|r 121 CEFD--DPIAAASIAQVHPAVVHDI-NGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ 197 (517) Q Consensus 121 ~~fd--ePlasASiaQVh~A~l~d~-~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 197 (517) ++|+ +-|++|+-|+||+|+++.. ..+..||||+.+.+..+. T Consensus 4 ~~~~l~~~iG~G~fG~Vy~g~~~~~g~~~~~VAvK~l~~~~~~~------------------------------------ 47 (269) T cd05065 4 SCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEK------------------------------------ 47 (269) T ss_pred HHCEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCHH------------------------------------ T ss_conf 99298889921778399999993799650799999988457979------------------------------------ Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC---CCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHH Q ss_conf 87888655999988987202446776643000010221---783353002478632426773320022568---999999 Q gi|254780623|r 198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT---ERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLV 271 (517) Q Consensus 198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s---t~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~ 271 (517) ..-+|.+|++.+.+++. |.| -+.|- +| ++-.|||||++|-++.+.-.......+... ++..++ T Consensus 48 ---~~~~f~~E~~il~~l~H-----pNI--v~~~g-~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~~ia 116 (269) T cd05065 48 ---QRRDFLSEASIMGQFDH-----PNI--IHLEG-VVTKSRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLRGIA 116 (269) T ss_pred ---HHHHHHHHHHHHHHCCC-----CCC--CEEEE-EEEECCEEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf ---99999999999986899-----788--71999-99889988999991899918999973679999999999999999 Q ss_pred HHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 99999897448661787862289802895357434031216989 Q gi|254780623|r 272 QSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 272 ~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) . -+.-+-..|++|.|.-|.|++++.++.+-+-|||+...+.+. T Consensus 117 ~-gl~yLH~~~iiHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~ 159 (269) T cd05065 117 A-GMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDD 159 (269) T ss_pred H-HHHHHHHCCEECCCCCCCCEEECCCCCEEEEECCCCEECCCC T ss_conf 9-999986698741667703066779996998335356776678 No 54 >cd05074 PTKc_Tyro3 Catalytic Domain of the Protein Tyrosine Kinase, Tyro3. Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac Probab=98.85 E-value=1.4e-08 Score=85.74 Aligned_cols=145 Identities=15% Similarity=0.291 Sum_probs=86.5 Q ss_pred HHHHHHHHHHHHHHHHEE-CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 766677888865555021-2888723687640310468877778899987532114685433469179999999887888 Q gi|254780623|r 124 DDPIAAASIAQVHPAVVH-DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME 202 (517) Q Consensus 124 dePlasASiaQVh~A~l~-d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E 202 (517) .+-|+.|+-|+||+|.++ +.++|++||||+.+++.... .-.+ T Consensus 4 ~~~iG~G~fG~Vy~~~~~~~~~~~~~vAvK~l~~~~~~~----------------------------~~~~--------- 46 (273) T cd05074 4 GRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSS----------------------------SDIE--------- 46 (273) T ss_pred CCEEECCCCEEEEEEEEECCCCCCEEEEEEEECHHHCCH----------------------------HHHH--------- T ss_conf 878965888199999994568877599999988120887----------------------------8999--------- Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHCC----CHHCCC----CEEEEECCCCCCCCHHHHHHHHC-----CCHHH---H Q ss_conf 65599998898720244677664300001----022178----33530024786324267733200-----22568---9 Q gi|254780623|r 203 MDLRLEAAAFSEMAENTVKDQGFRVPKID----WNRTER----DVITMEWIDGVKISDTEKLRACG-----HDLER---L 266 (517) Q Consensus 203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy----~~~st~----~VLvmE~i~G~~i~d~~~l~~~~-----~d~~~---l 266 (517) .|.+|++-+.+++. |.|. +.| ..-+.. -.++|||++|-.+.+.-.....+ .+.+. + T Consensus 47 -~~~~E~~~l~~l~H-----pnIv--~l~g~~~~~~~~~~~~~~~~v~e~~~~G~L~~~l~~~~~~~~~~~l~~~~~~~i 118 (273) T cd05074 47 -EFLREAACMKEFDH-----PNVI--KLIGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRF 118 (273) T ss_pred -HHHHHHHHHHHCCC-----CCCC--EEEEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHH T ss_conf -99999999996799-----9833--189999844666766510899983799888999876103577888899999999 Q ss_pred HHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 999999999989744866178786228980289535743403121698 Q gi|254780623|r 267 SVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 267 a~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) +..++.+ +.-+-..|+.|.|.-|.||++++++++.+.|||+...+.+ T Consensus 119 ~~qia~g-l~yLH~~~iiHRDlKp~NiLl~~~~~~kl~DFGls~~~~~ 165 (273) T cd05074 119 MIDIASG-MEYLSSKNFIHRDLAARNCMLNENMTVCVADFGLSKKIYS 165 (273) T ss_pred HHHHHHH-HHHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCEECCC T ss_conf 9999999-9999858936255656558998999789984687627789 No 55 >cd06612 STKc_MST1_2 Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activ Probab=98.84 E-value=4e-08 Score=82.15 Aligned_cols=139 Identities=18% Similarity=0.255 Sum_probs=90.1 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-||.|+-|.||+|+-+. +|+.||||+.+-. . +. . + T Consensus 9 ~~IG~G~fg~V~~~~~~~--~~~~~AiK~i~~~------~----------------------~~--------~------~ 44 (256) T cd06612 9 EKLGEGSYGSVYKAIHKE--TGQVVAIKVVPVE------E----------------------DL--------Q------E 44 (256) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECCC------C----------------------CH--------H------H T ss_conf 598207691999999989--9989999998654------5----------------------89--------9------9 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCC---HHHHHHHHHHHHHHHHH Q ss_conf 599998898720244677664300001022178--3353002478632426773320022---56899999999999897 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHD---LERLSVTLVQSFLLHTL 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d---~~~la~~l~~~~~~qi~ 279 (517) +.+|++.+..+.. | .|-+.|.-+.++ -.|||||++|-.+.+.-.......+ ...++..++.+ +..+- T Consensus 45 ~~~E~~il~~~~H-----p--nIv~~~~~~~~~~~~~lvmEy~~~g~L~~~l~~~~~~~~e~~v~~~~~qi~~a-l~ylH 116 (256) T cd06612 45 IIKEISILKQCDS-----P--YIVKYYGSYFKNTDLWIVMEYCGAGSVSDIMKITNKTLTEEEIAAILYQTLKG-LEYLH 116 (256) T ss_pred HHHHHHHHHHCCC-----C--CCCEEEEEEEECCEEEEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH-HHHHH T ss_conf 9999999986799-----9--99809999998999999997899993999999848999999999999999999-99999 Q ss_pred HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 448661787862289802895357434031216989 Q gi|254780623|r 280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) ..|+.|-|.-|.||+++.+|.+-+.|||+.+.++.. T Consensus 117 ~~~iiHRDlKp~NILl~~~~~~Ki~DFGls~~~~~~ 152 (256) T cd06612 117 SNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDT 152 (256) T ss_pred HCCEEEEECCHHHEEECCCCCEEEEECCCCEECCCC T ss_conf 899366135889955889999999427686185788 No 56 >cd06606 STKc_MAPKKK Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included Probab=98.84 E-value=1.3e-08 Score=85.80 Aligned_cols=142 Identities=20% Similarity=0.270 Sum_probs=90.0 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.||.|+-|+||+|+-++ +|+.||||+.+-.-... .-.+ . T Consensus 6 ~~IG~G~fg~V~~~~~~~--~~~~vAiK~i~~~~~~~----------------------------~~~~----------~ 45 (259) T cd06606 6 KLLGRGSFGSVYLALSKD--TGELVAVKSVELSSDSE----------------------------EELE----------S 45 (259) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECHHCCCH----------------------------HHHH----------H T ss_conf 796318992999999999--99899999984310898----------------------------9999----------9 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCH--HCCCHHCCCCEEEEECCCCCCCCHHHHHHHH-CCCH---HHHHHHHHHHHHHHH Q ss_conf 599998898720244677664300--0010221783353002478632426773320-0225---689999999999989 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVP--KIDWNRTERDVITMEWIDGVKISDTEKLRAC-GHDL---ERLSVTLVQSFLLHT 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP--~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~-~~d~---~~la~~l~~~~~~qi 278 (517) +.+|.+.+.+++ .|.| |+ ..+.+-...-.|||||++|-.+.+.- +.. ..+. ..++..++.+. .-+ T Consensus 46 ~~~E~~~l~~l~-----hpnI-v~~~~~~~~~~~~~~lvmEy~~~g~L~~~i--~~~~~~~e~~~~~~~~qi~~al-~yl 116 (259) T cd06606 46 LEREIRILSKLQ-----HPNI-VRYYGCEVTEENTLNIFMEYVSGGSLASLL--KKFGKLPEPVIRRYTRQILEGL-AYL 116 (259) T ss_pred HHHHHHHHHHCC-----CCCE-EEEEEEEEECCCEEEEEEECCCCCCHHHHH--HHCCCCCHHHHHHHHHHHHHHH-HHH T ss_conf 999999998779-----9898-079899994798899999789998899999--8659999999999999999999-999 Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 7448661787862289802895357434031216989 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) -..|+.|-|.-|.||+++.+|.+-+.|||+...++.. T Consensus 117 H~~~iiHrDlKp~NILl~~~~~iKl~DFGla~~~~~~ 153 (259) T cd06606 117 HSNGIVHRDIKGANILLDSDGVVKLADFGCAKRLASI 153 (259) T ss_pred HHCCEEECCCCHHHEEECCCCCEEEEECCCEEECCCC T ss_conf 9799984403889969878998999987824896777 No 57 >cd05033 PTKc_EphR Catalytic Domain of Ephrin Receptor Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment Probab=98.84 E-value=2.9e-08 Score=83.19 Aligned_cols=146 Identities=15% Similarity=0.241 Sum_probs=92.0 Q ss_pred HHHHHHHHHHHHHHHHHHEECC-CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 8676667788886555502128-887236876403104688777788999875321146854334691799999998878 Q gi|254780623|r 122 EFDDPIAAASIAQVHPAVVHDI-NGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTK 200 (517) Q Consensus 122 ~fdePlasASiaQVh~A~l~d~-~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~ 200 (517) +|++-|++|+-|.||+|+++.. ..+..||||+.+++..+ . T Consensus 7 ~~~~~IG~G~fg~Vy~~~~~~~~~~~~~vAvK~l~~~~~~---------------------------------------~ 47 (266) T cd05033 7 TIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSD---------------------------------------K 47 (266) T ss_pred EEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCH---------------------------------------H T ss_conf 9988993076839999999279965079999998865797---------------------------------------8 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCH--HCCCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHHHHH Q ss_conf 886559999889872024467766430000102--21783353002478632426773320022568---9999999999 Q gi|254780623|r 201 MEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWN--RTERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQSFL 275 (517) Q Consensus 201 ~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~--~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~~~~ 275 (517) .+.+|.+|++.+.+++. |.| -+.|.- -.+.-.|||||++|-++.+.-.-.....+... ++..++.+ + T Consensus 48 ~~~~f~~E~~~l~~l~H-----pnI--v~l~g~~~~~~~~~lV~Ey~~~GsL~~~L~~~~~~l~~~~~~~i~~~ia~g-l 119 (266) T cd05033 48 QRLDFLTEASIMGQFDH-----PNI--IRLEGVVTKSRPVMIITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASG-M 119 (266) T ss_pred HHHHHHHHHHHHHHCCC-----CCE--EEEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-H T ss_conf 99999999999984899-----788--119999968999999998589996999997278999999999999999999-9 Q ss_pred HHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 989744866178786228980289535743403121698 Q gi|254780623|r 276 LHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 276 ~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) .-+-..|+.|.|.-|.||+++.++.+-+-|||+...++. T Consensus 120 ~yLH~~~ivHrDlK~~NILl~~~~~~Kl~DFGls~~~~~ 158 (266) T cd05033 120 KYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLED 158 (266) T ss_pred HHHHHCCEECCCCCCCEEEECCCCCEEEEECCCCEECCC T ss_conf 988558887055672137787999889965677757778 No 58 >cd06635 STKc_TAO1 Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an im Probab=98.83 E-value=8.2e-08 Score=79.70 Aligned_cols=152 Identities=16% Similarity=0.148 Sum_probs=90.1 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH Q ss_conf 89999998676667788886555502128887236876403104688777788999875321146854334691799999 Q gi|254780623|r 115 PIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRA 194 (517) Q Consensus 115 ~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e 194 (517) +++..|..+ +-|++||-|.||+|+-+ .+|+.||||+.+..-. .+. + T Consensus 22 d~~k~y~~l-~~IG~G~fG~Vy~a~~~--~tg~~vAiK~i~~~~~--------------------------~~~-~---- 67 (317) T cd06635 22 DPEKLFTDL-REIGHGSFGAVYFARDV--RTNEVVAIKKMSYSGK--------------------------QSN-E---- 67 (317) T ss_pred CHHHCCEEE-EEECCCCCEEEEEEEEC--CCCCEEEEEEECHHHC--------------------------CCH-H---- T ss_conf 956638710-89513818299999988--9997999999863351--------------------------687-9---- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCC---HHHHHHH Q ss_conf 9988788865599998898720244677664300001022178--3353002478632426773320022---5689999 Q gi|254780623|r 195 LEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHD---LERLSVT 269 (517) Q Consensus 195 ~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d---~~~la~~ 269 (517) .. -++.+|.+-+.+++. |.|. +.|.-+.++ -.|||||+.|-.. +.-........ ...++.. T Consensus 68 ~~------~~~~~Ei~il~~l~H-----pnIV--~~~~~~~~~~~~~ivmEy~~G~~~-~l~~~~~~~l~e~~~~~i~~q 133 (317) T cd06635 68 KW------QDIIKEVKFLQRIKH-----PNSI--EYKGCYLREHTAWLVMEYCLGSAS-DLLEVHKKPLQEVEIAAITHG 133 (317) T ss_pred HH------HHHHHHHHHHHHCCC-----CCCC--EEEEEEEECCEEEEEEEECCCCHH-HHHHHHCCCCCHHHHHHHHHH T ss_conf 99------999999999997799-----8998--099999989988999995289858-999982699999999999999 Q ss_pred HHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 9999999897448661787862289802895357434031216989 Q gi|254780623|r 270 LVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 270 l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) ++.+ +.-+-..|+.|-|.-|.||+++.+|.+-+.|||+...+++. T Consensus 134 il~a-L~ylH~~~IiHRDLKp~NILl~~~~~vKl~DFG~a~~~~~~ 178 (317) T cd06635 134 ALQG-LAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASIASPA 178 (317) T ss_pred HHHH-HHHHHHCCCEEEECCHHHEEECCCCCEEEEECCCCEECCCC T ss_conf 9999-99999789333225488867889999899945687443799 No 59 >cd06650 PKc_MEK1 MEK1 (MAPKK1 or MKK1): Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase Probab=98.83 E-value=4.5e-09 Score=89.48 Aligned_cols=142 Identities=21% Similarity=0.317 Sum_probs=86.3 Q ss_pred HHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 867--666778888655550212888723687640310468877778899987532114685433469179999999887 Q gi|254780623|r 122 EFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT 199 (517) Q Consensus 122 ~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 199 (517) .|+ +.|+.||-|.||+|+-+. +|+.||+|+.+.... + .....+ T Consensus 6 dyeii~~IG~G~fG~Vy~a~~~~--tg~~vAiK~i~~~~~---------------------~------------~~~~~~ 50 (333) T cd06650 6 DFEKISELGAGNGGVVFKVSHKP--SGLIMARKLIHLEIK---------------------P------------AIRNQI 50 (333) T ss_pred CCEEEEEEECCCCEEEEEEEECC--CCCEEEEEEECHHHC---------------------H------------HHHHHH T ss_conf 78880276038991999999889--995999999765428---------------------7------------899999 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHH----HHHHHHH Q ss_conf 88865599998898720244677664300001022178--33530024786324267733200225689----9999999 Q gi|254780623|r 200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERL----SVTLVQS 273 (517) Q Consensus 200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~l----a~~l~~~ 273 (517) . +|++-+.++.. |. |-+.|.-+.++ -.|||||++|-.+.+.- +..+.-.... +..++.+ T Consensus 51 ~------~Ei~il~~l~h-----pn--IV~~~~~~~~~~~~~ivmEy~~gg~L~~~l--~~~~~~~e~~~~~i~~qi~~g 115 (333) T cd06650 51 I------RELQVLHECNS-----PY--IVGFYGAFYSDGEISICMEHMDGGSLDQVL--KKAGRIPEQILGKVSIAVIKG 115 (333) T ss_pred H------HHHHHHHHCCC-----CC--CCCEEEEEEECCEEEEEEECCCCCCHHHHH--HHCCCCCHHHHHHHHHHHHHH T ss_conf 9------99999986799-----99--991989999899999999838999789999--754999999999999999999 Q ss_pred HHHHH-HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 99989-744866178786228980289535743403121698 Q gi|254780623|r 274 FLLHT-LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 274 ~~~qi-~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) .- -+ -.+|+.|-|.-|.||+++.+|.+-+.|||+.+.+.. T Consensus 116 L~-ylH~~~~IiHRDIKP~NILi~~~g~vKL~DFGla~~~~~ 156 (333) T cd06650 116 LT-YLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID 156 (333) T ss_pred HH-HHHHHCCEEECCCCHHHEEECCCCCEEEEECCCCCCCCC T ss_conf 99-998628872224663117998999899997888763554 No 60 >cd05049 PTKc_Trk Catalytic Domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases. Protein Tyrosine Kinase (PTK) family; Tropomyosin related kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt Probab=98.83 E-value=2e-08 Score=84.46 Aligned_cols=143 Identities=15% Similarity=0.217 Sum_probs=91.0 Q ss_pred HHHHHHHHHHHHHHHHHEEC---CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 67666778888655550212---888723687640310468877778899987532114685433469179999999887 Q gi|254780623|r 123 FDDPIAAASIAQVHPAVVHD---INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT 199 (517) Q Consensus 123 fdePlasASiaQVh~A~l~d---~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 199 (517) |.+.|++|+-|.||+|++.. .+.++.||||+.++...+ T Consensus 9 ~~~~iG~G~fG~Vy~g~~~~~~~~~~~~~VAvK~l~~~~~~--------------------------------------- 49 (280) T cd05049 9 LKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASN--------------------------------------- 49 (280) T ss_pred EEEEEECCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCH--------------------------------------- T ss_conf 98699137586999999826754887889999998975786--------------------------------------- Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC---CCCEEEEECCCCCCCCHHHHHH--------HH-----CCCH Q ss_conf 888655999988987202446776643000010221---7833530024786324267733--------20-----0225 Q gi|254780623|r 200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT---ERDVITMEWIDGVKISDTEKLR--------AC-----GHDL 263 (517) Q Consensus 200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s---t~~VLvmE~i~G~~i~d~~~l~--------~~-----~~d~ 263 (517) ..+-+|.+|++.+.+++. |.|. +.|. +| ..-.|||||++|-.+.+.-..+ .. ..+. T Consensus 50 ~~~~~f~~E~~~l~~l~H-----pnIV--~l~g-~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~~~l~~ 121 (280) T cd05049 50 DARKDFEREAELLTNFQH-----ENIV--KFYG-VCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTL 121 (280) T ss_pred HHHHHHHHHHHHHHHCCC-----CCCC--CEEE-EEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCH T ss_conf 899999999999987799-----8874--0788-9977997799998069991999998709751001235555777799 Q ss_pred H---HHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf 6---8999999999998974486617878622898028953574340312169 Q gi|254780623|r 264 E---RLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 264 ~---~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) . .++..++.+. .-+-..|+.|.|.-|.||+++.++.+-+-|||+...+. T Consensus 122 ~~~~~i~~qia~gl-~yLH~~~ivHrDlK~~NiLl~~~~~~Kl~DFGls~~~~ 173 (280) T cd05049 122 SQLLQIAVQIASGM-VYLASQHFVHRDLATRNCLVGYDLVVKIGDFGMSRDVY 173 (280) T ss_pred HHHHHHHHHHHHHH-HHHHHCCEECCCCCCCEEEECCCCCEEEEECCCCCCCC T ss_conf 99999999999999-98866893426657401798789888963235543236 No 61 >cd05610 STKc_MASTL STKc_MASTL: Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknow Probab=98.83 E-value=6e-09 Score=88.49 Aligned_cols=141 Identities=20% Similarity=0.318 Sum_probs=87.9 Q ss_pred HHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 867--666778888655550212888723687640310468877778899987532114685433469179999999887 Q gi|254780623|r 122 EFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT 199 (517) Q Consensus 122 ~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 199 (517) .|+ ++|+.|+.|.||+|+-++ +|+.|||||.+.. |+ . + ++.... T Consensus 5 df~ilk~IG~G~fG~Vyla~~~~--~g~~~AiK~l~~~-------~~---------~----------~-----~~~~~~- 50 (669) T cd05610 5 EFVIVKPISRGAFGKVYLGRKKN--NSKLYAVKVVKKA-------DM---------I----------N-----KNMVHQ- 50 (669) T ss_pred CEEEEEEEECCCCCEEEEEEECC--CCCEEEEEEEEHH-------HC---------C----------C-----HHHHHH- T ss_conf 27998896417581999999899--9989999998278-------82---------4----------9-----899999- Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHH----HHHHHHHHH Q ss_conf 888655999988987202446776643000010221783--35300247863242677332002256----899999999 Q gi|254780623|r 200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLE----RLSVTLVQS 273 (517) Q Consensus 200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~----~la~~l~~~ 273 (517) +..|++.+...+ .|. |-+.|+.+.+.. .|||||++|-.+.+.- +..+.-.. .+...++.+ T Consensus 51 -----~~~E~~~l~~~~-----hp~--Iv~l~~~~~~~~~~ylvmEy~~gg~L~~~l--~~~~~~~e~~~~~~~~qi~~a 116 (669) T cd05610 51 -----VQAERDALALSK-----SPF--IVHLYYSLQSANNVYLVMEYLIGGDVKSLL--HIYGYFDEEMAVKYISEVALA 116 (669) T ss_pred -----HHHHHHHHHHCC-----CCC--CCEEEEEEEECCEEEEEEECCCCCCHHHHH--HHHCCCCHHHHHHHHHHHHHH T ss_conf -----999999998669-----986--795999999899999998278998299999--984899999999999999999 Q ss_pred HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 99989744866178786228980289535743403121 Q gi|254780623|r 274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) +.-+-..|+.|-|.-|.||+++.+|.+-+.|||+... T Consensus 117 -L~~lH~~gIiHRDiKp~NiLl~~~g~vKl~DFGlSk~ 153 (669) T cd05610 117 -LDYLHRHGIIHRDLKPDNMLISNEGHIKLTDFGLSKV 153 (669) T ss_pred -HHHHHHCCCEECCCCHHHEEECCCCCEEEEECCCCCC T ss_conf -9999978876225780030077899789930474303 No 62 >cd00192 PTKc Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan Probab=98.82 E-value=7.4e-09 Score=87.81 Aligned_cols=144 Identities=15% Similarity=0.203 Sum_probs=89.3 Q ss_pred HHHHHHHHHHHHHHHEEC-CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 666778888655550212-8887236876403104688777788999875321146854334691799999998878886 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHD-INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM 203 (517) Q Consensus 125 ePlasASiaQVh~A~l~d-~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El 203 (517) |+|+.|+-|.||+|++++ ++.++.||||+.++...+. .. + T Consensus 1 ~~iG~G~fg~V~~a~~~~~~~~~~~VAvK~~~~~~~~~-----------------------------~~--------~-- 41 (261) T cd00192 1 KKLGEGAFGEVYKGELKGKGGKKTPVAVKTLKEDASDS-----------------------------ER--------E-- 41 (261) T ss_pred CCCCCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCHH-----------------------------HH--------H-- T ss_conf 93874888289999997799725999999989327999-----------------------------99--------9-- Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHCCCH--HCCCCEEEEECCCCCCCCHHHHHH-------HHCCC---HHHHHHHHH Q ss_conf 559999889872024467766430000102--217833530024786324267733-------20022---568999999 Q gi|254780623|r 204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWN--RTERDVITMEWIDGVKISDTEKLR-------ACGHD---LERLSVTLV 271 (517) Q Consensus 204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~--~st~~VLvmE~i~G~~i~d~~~l~-------~~~~d---~~~la~~l~ 271 (517) +|.+|++.+.+++. |.|. +.|.- ....-.|||||++|-++.+.-.-. ..... +..++..++ T Consensus 42 ~~~~E~~~l~~l~H-----pnIv--~~~g~~~~~~~~~iv~Ey~~~GsL~~~l~~~~~~~~~~~~~l~~~~~~~~~~qia 114 (261) T cd00192 42 DFLKEAKIMKKLGH-----PNIV--RLLGVCTEEEPLYLVLEYMEGGDLLDFLRKSRPVFSPESSTLSLKDLLSFAYQIA 114 (261) T ss_pred HHHHHHHHHHHCCC-----CCEE--EEEEEEEECCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 99999999986899-----8884--2878996799889999806999599999863555444468899999999999999 Q ss_pred HHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 99999897448661787862289802895357434031216989 Q gi|254780623|r 272 QSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 272 ~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) ++ +.-+-..|+.|.|.-|.||+++.+|.+-+-|||+...+++. T Consensus 115 ~g-l~yLH~~~iiHrDiKp~NILl~~~~~~Kl~DFGls~~~~~~ 157 (261) T cd00192 115 SG-MEYLASKNFVHRDLAARNVLVGEDLVVKIADFGLSRDIYDD 157 (261) T ss_pred HH-HHHHHHCCCCCCCCCHHHEEECCCCCEEEEECCCCEECCCC T ss_conf 99-99997699557877678789879996899216576576789 No 63 >cd05148 PTKc_Srm_Brk Catalytic Domain of the Protein Tyrosine Kinases, Srm and Brk. Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom Probab=98.82 E-value=2.5e-08 Score=83.67 Aligned_cols=144 Identities=15% Similarity=0.169 Sum_probs=93.5 Q ss_pred HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 99867--6667788886555502128887236876403104688777788999875321146854334691799999998 Q gi|254780623|r 120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ 197 (517) Q Consensus 120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 197 (517) ++.|+ +.|++||-|+||+|++++ +.+||||+.+-. + + ... T Consensus 5 ~~~~~~~~~iG~G~fg~Vy~~~~~~---~~~VAvK~i~~~-------~---------------~--------~~~----- 46 (261) T cd05148 5 REEFTLERKLGSGYFGEVWEGLWKN---RVRVAIKILKSD-------D---------------L--------LKQ----- 46 (261) T ss_pred HHHCEEEEEEECCCCCEEEEEEECC---CCEEEEEEECCC-------C---------------H--------HHH----- T ss_conf 8985850299518883999999999---989999998746-------7---------------2--------789----- Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHH-HHHCCCH---HHHHHHHH Q ss_conf 87888655999988987202446776643000010221--783353002478632426773-3200225---68999999 Q gi|254780623|r 198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKL-RACGHDL---ERLSVTLV 271 (517) Q Consensus 198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l-~~~~~d~---~~la~~l~ 271 (517) -+|.+|++.+.+++. |. |-+.|.-.. ..-.+||||++|-.+.+.-.- +....+. -.++..++ T Consensus 47 -----~~f~~Ei~~l~~l~H-----pn--Iv~~~g~~~~~~~~~iv~Ey~~~GsL~~~l~~~~~~~l~~~~~~~i~~qia 114 (261) T cd05148 47 -----QDFQKEVQALKRLRH-----KH--LISLFAVCSVGEPVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVA 114 (261) T ss_pred -----HHHHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHH T ss_conf -----999999999986799-----88--841877992199899999817998389986244688799999999999999 Q ss_pred HHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 9999989744866178786228980289535743403121698 Q gi|254780623|r 272 QSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 272 ~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) .+ +.-+-..|+.|.|.-|.||+++.++.+-+-|||....+.. T Consensus 115 ~g-l~yLH~~~iiHrDLK~~NiLl~~~~~~Kl~DFGls~~~~~ 156 (261) T cd05148 115 EG-MAYLEEQNSIHRDLAARNILVGEDLVCKVADFGLARLIKE 156 (261) T ss_pred HH-HHHHHHCCCCCCCCCCCEEEECCCCCEEECCCCCCEECCC T ss_conf 99-9999869966675661769988999499814755467478 No 64 >cd06657 STKc_PAK4 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability a Probab=98.82 E-value=2.9e-08 Score=83.16 Aligned_cols=147 Identities=18% Similarity=0.231 Sum_probs=91.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH Q ss_conf 99999986766677888865555021288872368764031046887777889998753211468543346917999999 Q gi|254780623|r 116 IEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL 195 (517) Q Consensus 116 ~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 195 (517) +...|..++ .|+.||-|+||+|+-+. +|+.||||+..- .. . . - T Consensus 18 p~~~y~~~~-kIG~G~fg~V~~a~~~~--tg~~vAiK~i~~--------------------~~--~-----~-------~ 60 (292) T cd06657 18 PRTYLDNFI-KIGEGSTGIVCIATVKS--SGKLVAVKKMDL--------------------RK--Q-----Q-------R 60 (292) T ss_pred HHHHCCCCE-EECCCCCCEEEEEEECC--CCCEEEEEEEEC--------------------CC--C-----C-------H T ss_conf 489775286-96228881999999889--998999999830--------------------56--4-----0-------3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHH Q ss_conf 98878886559999889872024467766430000102217--83353002478632426773320022568---99999 Q gi|254780623|r 196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRACGHDLER---LSVTL 270 (517) Q Consensus 196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l 270 (517) ...+ .+|.+.++.+.. |.| =+.|..+.+ .-.|||||++|-.+.+.-. ....+-.. ++..+ T Consensus 61 ~~~~------~~Ei~il~~l~H-----pnI--v~l~~~~~~~~~~ylvmEy~~gG~L~~~~~--~~~l~e~~i~~i~~qi 125 (292) T cd06657 61 RELL------FNEVVIMRDYQH-----ENV--VEMYNSYLVGDELWVVMEFLEGGALTDIVT--HTRMNEEQIAAVCLAV 125 (292) T ss_pred HHHH------HHHHHHHHHCCC-----CCC--CCEEEEEEECCEEEEEEECCCCCCHHHHHH--HCCCCHHHHHHHHHHH T ss_conf 8999------999999986799-----899--829899998999999996769787999998--1899999999999999 Q ss_pred HHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 999999897448661787862289802895357434031216989 Q gi|254780623|r 271 VQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 271 ~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) +.+ +.-+-..|+.|-|.-|.||+++.+|++-+.|||....++.. T Consensus 126 l~a-L~yLH~~~IiHRDiKpeNILl~~~g~iKL~DFGla~~~~~~ 169 (292) T cd06657 126 LKA-LSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE 169 (292) T ss_pred HHH-HHHHHHCCCEEEECCCHHEEECCCCCEEEEEEEEEEECCCC T ss_conf 999-99999789453226713067858998899960213664777 No 65 >cd06607 STKc_TAO Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Probab=98.82 E-value=1.3e-08 Score=85.99 Aligned_cols=151 Identities=17% Similarity=0.127 Sum_probs=90.8 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH Q ss_conf 89999998676667788886555502128887236876403104688777788999875321146854334691799999 Q gi|254780623|r 115 PIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRA 194 (517) Q Consensus 115 ~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e 194 (517) ++++.|.-. +-|++||-|.||+|+-+. +|+.||||+.+..-. -+ .+. T Consensus 12 dp~~~Y~~l-~~IG~G~fg~Vy~a~~~~--tg~~vAiK~i~~~~~--------------------------~~----~~~ 58 (307) T cd06607 12 DPEKLFTDL-REIGHGSFGAVYFARDVR--TNEVVAIKKMSYSGK--------------------------QS----NEK 58 (307) T ss_pred CHHHCEEEE-EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHC--------------------------CC----HHH T ss_conf 967807953-896038881999999889--997999999851112--------------------------57----899 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHH---HHHHH Q ss_conf 9988788865599998898720244677664300001022178--335300247863242677332002256---89999 Q gi|254780623|r 195 LEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLE---RLSVT 269 (517) Q Consensus 195 ~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~ 269 (517) .-++.+|.+.+.+++. |.|. +.|.-+.++ -.|||||+.|-..+-.. ....+.+.. .++.. T Consensus 59 -------~~~~~~Ei~il~~l~H-----pnIv--~~~~~~~~~~~~~ivmEy~~G~~~~~~~-~~~~~l~e~~i~~i~~q 123 (307) T cd06607 59 -------WQDIIKEVRFLQQLRH-----PNTI--EYKGCYLREHTAWLVMEYCLGSASDILE-VHKKPLQEVEIAAICHG 123 (307) T ss_pred -------HHHHHHHHHHHHHCCC-----CCCC--CEEEEEEECCEEEEEEEECCCCHHHHHH-HHCCCCCHHHHHHHHHH T ss_conf -------9999999999996799-----8999--1999999899899999907898489999-84389999999999999 Q ss_pred HHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 999999989744866178786228980289535743403121698 Q gi|254780623|r 270 LVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 270 l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) ++.+ +.-+-..|+.|-|.-|.||+++.+|.+-+.|||+...+++ T Consensus 124 il~a-L~yLH~~~iiHRDlKP~NILl~~~g~vKl~DFG~a~~~~~ 167 (307) T cd06607 124 ALQG-LAYLHSHERIHRDIKAGNILLTEPGTVKLADFGSASLVSP 167 (307) T ss_pred HHHH-HHHHHHCCEEECCCCCCEEEECCCCCEEEEECCCCEECCC T ss_conf 9999-9999868976054670007898999999986798744378 No 66 >cd05097 PTKc_DDR_like Catalytic Domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Discoidin domain receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including Probab=98.82 E-value=8.7e-08 Score=79.53 Aligned_cols=143 Identities=18% Similarity=0.267 Sum_probs=87.9 Q ss_pred HHHHHHHHHHHHHHHHHHEECC----------CCCC--EEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH Q ss_conf 8676667788886555502128----------8872--368764031046887777889998753211468543346917 Q gi|254780623|r 122 EFDDPIAAASIAQVHPAVVHDI----------NGYR--KVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFS 189 (517) Q Consensus 122 ~fdePlasASiaQVh~A~l~d~----------~~g~--~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~ 189 (517) .+.+.|++|+.|.||+|+.+-. .+|+ .||||+.+++..+. T Consensus 8 ~l~~~iG~G~FG~Vy~~~~~g~~~~~~~~~~~~~~~~~~VAvK~l~~~~~~~---------------------------- 59 (295) T cd05097 8 RLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKT---------------------------- 59 (295) T ss_pred EEEEEECCCCCCEEEEEEECCCCHHCCCCCCCCCCCEEEEEEEEECCCCCHH---------------------------- T ss_conf 8833981374859896488474210133553458945799999978658978---------------------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCH--HCCCCEEEEECCCCCCCCHHHHHHHH-------- Q ss_conf 99999998878886559999889872024467766430000102--21783353002478632426773320-------- Q gi|254780623|r 190 AVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWN--RTERDVITMEWIDGVKISDTEKLRAC-------- 259 (517) Q Consensus 190 ~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~--~st~~VLvmE~i~G~~i~d~~~l~~~-------- 259 (517) ..-+|.+|++.+.+++. |.| =+.|.- -..+-.|||||++|-++.+.-.-... T Consensus 60 -----------~~~~f~~E~~il~~l~H-----pNI--V~l~G~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~~ 121 (295) T cd05097 60 -----------ARNDFLKEIKIMSRLKN-----PNI--IRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHAN 121 (295) T ss_pred -----------HHHHHHHHHHHHHHCCC-----CCC--CCEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCC T ss_conf -----------99999999999986799-----799--889899998996799997377993999986223332112235 Q ss_pred ---CCCHH---HHHHHHHH--HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf ---02256---89999999--99998974486617878622898028953574340312169 Q gi|254780623|r 260 ---GHDLE---RLSVTLVQ--SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 260 ---~~d~~---~la~~l~~--~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) ..+.. .+|..++. .|+ -..++.|.|.-|.||+++.++.+-+-|||+...+. T Consensus 122 ~~~~l~~~~~l~ia~qia~gl~yL---h~~~iiHrDLK~~NiLl~~~~~~Ki~DFGlar~~~ 180 (295) T cd05097 122 NIPSVSIANLLYMAVQIASGMKYL---ASLNFVHRDLATRNCLVGNHYTIKIADFGMSRNLY 180 (295) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH---HHCCEECCCCCCCEEEECCCCCEEEEECCCCCCCC T ss_conf 778668999999999999999998---54985526667040888899978996442552567 No 67 >cd06643 STKc_SLK Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Probab=98.81 E-value=2.2e-08 Score=84.10 Aligned_cols=148 Identities=16% Similarity=0.153 Sum_probs=91.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH Q ss_conf 99999986766677888865555021288872368764031046887777889998753211468543346917999999 Q gi|254780623|r 116 IEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL 195 (517) Q Consensus 116 ~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 195 (517) +++.|.-. +.||.|+-|+||+|+-+. +|+.||||+....- -++. T Consensus 3 ~~d~Y~il-~~iG~G~fg~Vy~a~~~~--~~~~~AvK~~~~~~---------------------------------~~~~ 46 (282) T cd06643 3 PEEFWEII-GELGDGAFGKVYKAQNKE--TGVLAAAKVIDTKS---------------------------------EEEL 46 (282) T ss_pred HHHCEEEE-EEEECCCCEEEEEEEECC--CCCEEEEEEECCCC---------------------------------HHHH T ss_conf 45887974-598027683999999889--99499999977248---------------------------------8999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCH---HHHHHHH Q ss_conf 988788865599998898720244677664300001022178--33530024786324267733200225---6899999 Q gi|254780623|r 196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDL---ERLSVTL 270 (517) Q Consensus 196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~---~~la~~l 270 (517) -++.+|.+.+..++. |. |-+.|.-+.++ -.|||||++|-.+.+.-.-.....+- ..++..+ T Consensus 47 -------~~~~~Ei~il~~l~H-----pn--Iv~l~~~~~~~~~~~lvmE~~~gg~L~~~l~~~~~~l~e~~~~~i~~qi 112 (282) T cd06643 47 -------EDYMVEIDILASCDH-----PN--IVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTEPQIRVVCKQT 112 (282) T ss_pred -------HHHHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHH T ss_conf -------999999999986799-----89--9929999998998999999379994899998707999999999999999 Q ss_pred HHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 99999989744866178786228980289535743403121698 Q gi|254780623|r 271 VQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 271 ~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) +.+ +.-+-..|+.|-|..|.||+++.+|.+-+.|||+...... T Consensus 113 ~~g-l~ylH~~~iiHRDIKp~NILl~~~g~vKl~DFGls~~~~~ 155 (282) T cd06643 113 LEA-LNYLHENKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTR 155 (282) T ss_pred HHH-HHHHHHCCEEEEECCHHHEEECCCCCEEEEECCCCEECCC T ss_conf 999-9999978976633666877887999999960747730787 No 68 >cd06917 STKc_NAK1_like Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Probab=98.81 E-value=1.6e-08 Score=85.17 Aligned_cols=143 Identities=20% Similarity=0.256 Sum_probs=90.0 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +=||.|+-|.||+|.-.. +|+.|||||..-.. .. ++ --+ T Consensus 7 ~~iG~G~fg~V~~a~~~~--~~~~vAiK~i~~~~----------------------~~----------~~-------~~~ 45 (277) T cd06917 7 ELIGRGAYGAVYRGKHVP--TGRVVALKIINLDT----------------------PD----------DD-------VSD 45 (277) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECCCC----------------------CH----------HH-------HHH T ss_conf 797027683999999989--99899999985314----------------------96----------79-------999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHH---HHHHHHHHHHHHHHH Q ss_conf 599998898720244677664300001022178--335300247863242677332002256---899999999999897 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLE---RLSVTLVQSFLLHTL 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~l~~~~~~qi~ 279 (517) +.+|++-+..++.. +.| .|=+.|..+.++ -.+||||++|-.+.+.- +....+-. .++..++.+ +.-+- T Consensus 46 ~~~Ei~~l~~l~h~--~~p--nIv~~~~~~~~~~~~~ivmE~~~~g~L~~~~--~~~~~~e~~~~~~~~qi~~a-l~ylH 118 (277) T cd06917 46 IQREVALLSQLRQS--QPP--NITKYYGSYLKGPRLWIIMEYAEGGSVRTLM--KAGPIAEKYISVIIREVLVA-LKYIH 118 (277) T ss_pred HHHHHHHHHHCCCC--CCC--CEEEEEEEEEECCEEEEEEECCCCCCHHHHH--HCCCCCHHHHHHHHHHHHHH-HHHHH T ss_conf 99999999971789--999--8789999999899999999377988899998--54999999999999999999-99998 Q ss_pred HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 448661787862289802895357434031216989 Q gi|254780623|r 280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) ..|+.|-|.-|+||+++.+|++-+.|||+...+.+. T Consensus 119 ~~~iiHRDlKpeNILl~~~~~vKL~DFGla~~~~~~ 154 (277) T cd06917 119 KVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQN 154 (277) T ss_pred HCCCEEEECCHHHCEECCCCCEEEECCCCCEECCCC T ss_conf 789555345625410679998899045276574689 No 69 >cd06649 PKc_MEK2 MEK2 (MAPKK2 or MKK2): Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase Probab=98.81 E-value=6.4e-09 Score=88.28 Aligned_cols=143 Identities=20% Similarity=0.268 Sum_probs=86.5 Q ss_pred HHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 867--666778888655550212888723687640310468877778899987532114685433469179999999887 Q gi|254780623|r 122 EFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT 199 (517) Q Consensus 122 ~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 199 (517) .|+ +.|+.||-|.||+|+-+. +|+.||+|+.+..... .....+ T Consensus 6 dye~i~~IG~G~fG~Vy~a~~~~--tg~~vAiK~i~~~~~~---------------------------------~~~~~~ 50 (331) T cd06649 6 DFERISELGAGNGGVVTKVQHKP--SGLIMARKLIHLEIKP---------------------------------AIRNQI 50 (331) T ss_pred CCEEEEEEECCCCEEEEEEEECC--CCCEEEEEEECHHHCH---------------------------------HHHHHH T ss_conf 38881386128994999999889--9949999996543087---------------------------------899999 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHHHCCCHHH----HHHHHHHH Q ss_conf 888655999988987202446776643000010221--783353002478632426773320022568----99999999 Q gi|254780623|r 200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRACGHDLER----LSVTLVQS 273 (517) Q Consensus 200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~~~~d~~~----la~~l~~~ 273 (517) .+|++-+..+. .|. |-+.|..+. +.-.+||||++|-.+.++- +..+.-... ++..++.+ T Consensus 51 ------~rE~~il~~l~-----hpn--IV~~~~~~~~~~~~~ivmEy~~gg~L~~~l--~~~~~~~e~~~~~i~~qil~g 115 (331) T cd06649 51 ------IRELQVLHECN-----SPY--IVGFYGAFYSDGEISICMEHMDGGSLDQVL--KEAKRIPEEILGKVSIAVLRG 115 (331) T ss_pred ------HHHHHHHHHCC-----CCC--CCCEEEEEEECCEEEEEEECCCCCCHHHHH--HHCCCCCHHHHHHHHHHHHHH T ss_conf ------99999998679-----989--995999999899999999838999689999--864999999999999999999 Q ss_pred HHHHH-HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 99989-7448661787862289802895357434031216989 Q gi|254780623|r 274 FLLHT-LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 274 ~~~qi-~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) .- -+ -.+|++|-|.-|.||+++.+|.+-+.|||+.+.+... T Consensus 116 L~-yLH~~~~IiHRDiKP~NILl~~~g~vKL~DFGla~~~~~~ 157 (331) T cd06649 116 LA-YLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS 157 (331) T ss_pred HH-HHHHCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCC T ss_conf 99-9985398865356611068989999999567987655557 No 70 >cd06615 PKc_MEK MEK1/2 (MAPK kinase 1/2, MAPKK1/2 or MKK1/2): Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, extracellul Probab=98.81 E-value=9.8e-09 Score=86.86 Aligned_cols=136 Identities=21% Similarity=0.303 Sum_probs=83.2 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.||-|.||+|+-+. +|+.||+|+.+-... + .....+. T Consensus 7 ~~iG~G~fg~V~~a~~~~--t~~~~A~K~i~~~~~---------------------~------------~~~~~~~---- 47 (308) T cd06615 7 GELGAGNGGVVTKVLHRP--SGLIMARKLIHLEIK---------------------P------------AIRNQII---- 47 (308) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHC---------------------H------------HHHHHHH---- T ss_conf 786118892999999889--996999999865519---------------------8------------9999999---- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH---- Q ss_conf 59999889872024467766430000102217--833530024786324267733200225689999999999989---- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT---- 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi---- 278 (517) +|.+.+..+. .|. |-+.|..+.+ .-.|||||++|-.+.+. ++..+.-.. ..+..++.|+ T Consensus 48 --~Ei~il~~~~-----hpn--Iv~l~~~~~~~~~~~ivmEy~~gg~L~~~--l~~~~~l~e----~~~~~i~~qil~~L 112 (308) T cd06615 48 --RELKVLHECN-----SPY--IVGFYGAFYSDGEISICMEHMDGGSLDQV--LKKAGRIPE----NILGKISIAVLRGL 112 (308) T ss_pred --HHHHHHHHCC-----CCC--CCCEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCH----HHHHHHHHHHHHHH T ss_conf --9999998679-----999--99099999989999999973799809999--976499999----99999999999999 Q ss_pred ---H-HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf ---7-44866178786228980289535743403121698 Q gi|254780623|r 279 ---L-RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 279 ---~-~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) - ..|+.|-|.-|.||+++.+|.+-+.|||+.+.+.+ T Consensus 113 ~ylH~~~~IiHRDiKP~NILl~~~g~vKl~DFGls~~~~~ 152 (308) T cd06615 113 TYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID 152 (308) T ss_pred HHHHHHCCEEEEECCCCCEEECCCCCEEEEEECCCEECCC T ss_conf 9998719987533461227897999999986033302155 No 71 >cd06654 STKc_PAK1 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulati Probab=98.80 E-value=2.1e-08 Score=84.37 Aligned_cols=139 Identities=15% Similarity=0.219 Sum_probs=90.1 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.||-|.||+|+-+. +|+.||||+.+.. . .+. ... T Consensus 26 ~~iG~G~fg~Vy~a~~~~--t~~~vAiK~i~~~--------------------~-~~~-------------~~~------ 63 (296) T cd06654 26 EKIGQGASGTVYTAMDVA--TGQEVAIRQMNLQ--------------------Q-QPK-------------KEL------ 63 (296) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEEHH--------------------H-CCH-------------HHH------ T ss_conf 897038683999999889--9989999998432--------------------2-753-------------899------ Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHHHHHHHHH Q ss_conf 599998898720244677664300001022178--3353002478632426773320022568---99999999999897 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQSFLLHTL 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~~~~~qi~ 279 (517) +.+|...+.++. .|.| -+.|..+.+. -.+||||++|-.+.+. +...+.+-.. ++..++.+ +.-+- T Consensus 64 ~~~Ei~il~~l~-----HpnI--v~l~~~~~~~~~~~ivmE~~~gg~L~~~--l~~~~l~e~~~~~i~~qil~a-L~ylH 133 (296) T cd06654 64 IINEILVMRENK-----NPNI--VNYLDSYLVGDELWVVMEYLAGGSLTDV--VTETCMDEGQIAAVCRECLQA-LEFLH 133 (296) T ss_pred HHHHHHHHHHCC-----CCCC--CEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCHHHHHHHHHHHHHH-HHHHH T ss_conf 999999998779-----9998--9099999989999999962899947999--871699999999999999999-99998 Q ss_pred HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 448661787862289802895357434031216989 Q gi|254780623|r 280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) ..|+.|-|.-|.||+++.+|.+-+.|||+...++++ T Consensus 134 ~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~ 169 (296) T cd06654 134 SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE 169 (296) T ss_pred HCCCEECCCCCHHEEECCCCCEEEEECCCCEECCCC T ss_conf 789650217805458989999999957888566788 No 72 >cd06638 STKc_myosinIIIA Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear hair cells. It is localized to the distal ends of actin-bundled structures. Probab=98.80 E-value=1e-08 Score=86.74 Aligned_cols=140 Identities=18% Similarity=0.320 Sum_probs=86.4 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.||-|.||+|+-+. +|+.||||+.++.- + .-+ . T Consensus 24 ~~iG~G~fg~Vy~a~~~~--~g~~vAiK~i~~~~----------------------------~---~~~----------~ 60 (286) T cd06638 24 ETIGKGTYGKVFKVLNKK--NGSKAAVKILDPIH----------------------------D---IDE----------E 60 (286) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECCHH----------------------------C---CHH----------H T ss_conf 598226383999999758--99899999989011----------------------------6---589----------9 Q ss_pred HHHHHHHHHHHHCCCCCCCC-CCCHHCCCH--HC--CCCEEEEECCCCCCCCHHHH-HHHHCCCHHHHHHHHHHHHHHH- Q ss_conf 59999889872024467766-430000102--21--78335300247863242677-3320022568999999999998- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQG-FRVPKIDWN--RT--ERDVITMEWIDGVKISDTEK-LRACGHDLERLSVTLVQSFLLH- 277 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~--~s--t~~VLvmE~i~G~~i~d~~~-l~~~~~d~~~la~~l~~~~~~q- 277 (517) +.+|.+.+.++++ .|. |.+=.+|.+ .. ..-.|||||++|-.+.|+-. ....+ +.+.+..+..+++| T Consensus 61 ~~~E~~il~~l~~----HpnIv~~~~~~~~~~~~~~~~~~ivmE~~~gg~L~dl~~~~~~~~---~~~~e~~~~~i~~qi 133 (286) T cd06638 61 IEAEYNILKALSD----HPNVVKFYGMYYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRG---ERMEEPIIAYILHEA 133 (286) T ss_pred HHHHHHHHHHHCC----CCCCCEEEEEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHH T ss_conf 9999999997459----999784999996526565988999997689988999999988607---889999999999999 Q ss_pred ------HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf ------9744866178786228980289535743403121698 Q gi|254780623|r 278 ------TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 278 ------i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) +-..|+.|-|.-|.||+++.+|.+-+.|||+...++. T Consensus 134 l~aL~ylH~~~iiHRDiKp~NILl~~~~~vKl~DFGla~~~~~ 176 (286) T cd06638 134 LMGLQHLHVNKTIHRDVKGNNILLTTEGGVKLVDFGVSAQLTS 176 (286) T ss_pred HHHHHHHHHCCCEEEECCHHHEEECCCCCEEEEECCCCEECCC T ss_conf 9999999988954202667887886899879962676337368 No 73 >cd05625 STKc_LATS1 STKc_LATS1: Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype and poor prognosis. LATS1 induces G2 arrest and promotes cytokinesis. It Probab=98.80 E-value=3.7e-09 Score=90.11 Aligned_cols=136 Identities=22% Similarity=0.336 Sum_probs=85.4 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.||-|+||+|+-++ +|+.||+|+.+.. ++ .. .. -...+ T Consensus 7 k~iG~G~fG~V~la~~~~--t~~~~AiK~i~k~-------~~---------~~-----------~~----~~~~~----- 48 (382) T cd05625 7 KTLGIGAFGEVCLARKVD--TGALYAMKTLRKK-------DV---------LL-----------RN----QVAHV----- 48 (382) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECHH-------HC---------CC-----------HH----HHHHH----- T ss_conf 588148683999999889--9989999998257-------73---------24-----------67----99999----- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH----- Q ss_conf 5999988987202446776643000010221783--353002478632426773320022568999999999998----- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH----- 277 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q----- 277 (517) .+|.+-+.+.. ++. |.+.|..+.+++ .|||||++|-.+.+. +...+.-... .+..|+.| T Consensus 49 -~~E~~il~~~~-----hp~--Iv~l~~~f~~~~~lylVmEy~~gGdL~~~--l~~~~~~~e~----~a~~~~~qi~~aL 114 (382) T cd05625 49 -KAERDILAEAD-----NEW--VVRLYYSFQDKDNLYFVMDYIPGGDMMSL--LIRMGIFPED----LAQFYIAELTCAV 114 (382) T ss_pred -HHHHHHHHHCC-----CCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHCCCCCCHH----HHHHHHHHHHHHH T ss_conf -99999998689-----998--77599999989999999972599707775--4125579999----9999999999999 Q ss_pred --HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC Q ss_conf --97448661787862289802895357434031216 Q gi|254780623|r 278 --TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL 312 (517) Q Consensus 278 --i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l 312 (517) +-..|+.|-|.-|.||+++.+|.+-+.|||++..+ T Consensus 115 ~~lH~~gIiHRDLKPeNILld~~g~iKL~DFGla~~~ 151 (382) T cd05625 115 ESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGF 151 (382) T ss_pred HHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCCCC T ss_conf 9998555401557666378889998899406886343 No 74 >pfam07714 Pkinase_Tyr Protein tyrosine kinase. Probab=98.80 E-value=1.6e-08 Score=85.17 Aligned_cols=145 Identities=16% Similarity=0.218 Sum_probs=91.0 Q ss_pred HHHHHHHHHHHHHHHHEEC--CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 7666778888655550212--88872368764031046887777889998753211468543346917999999988788 Q gi|254780623|r 124 DDPIAAASIAQVHPAVVHD--INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKM 201 (517) Q Consensus 124 dePlasASiaQVh~A~l~d--~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 201 (517) .+.|++||-|.||+|+.++ ...+++||||+.++... + . . T Consensus 4 ~~~iG~G~fg~Vy~~~~~~~~~~~~~~VAvK~~~~~~~---------------------~--------~----------~ 44 (258) T pfam07714 4 GKKLGEGAFGEVYKGTLKGLGEGTETKVAVKTLKEGAS---------------------E--------E----------E 44 (258) T ss_pred EEEEEECCCCEEEEEEEECCCCCCCEEEEEEEECCCCC---------------------H--------H----------H T ss_conf 46995087839999999378775684999999894489---------------------8--------9----------9 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCH--HCCCCEEEEECCCCCCCCHHHHHHHHCCCH---HHHHHHHHHHHHH Q ss_conf 86559999889872024467766430000102--217833530024786324267733200225---6899999999999 Q gi|254780623|r 202 EMDLRLEAAAFSEMAENTVKDQGFRVPKIDWN--RTERDVITMEWIDGVKISDTEKLRACGHDL---ERLSVTLVQSFLL 276 (517) Q Consensus 202 ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~--~st~~VLvmE~i~G~~i~d~~~l~~~~~d~---~~la~~l~~~~~~ 276 (517) +-+|.+|++.+.+++. |.|. +.|.- ....-.|||||++|-.+.+.-.-.....+. ..++..++.+ +. T Consensus 45 ~~~~~~E~~~l~~l~H-----pnIV--~~~~~~~~~~~~~lvmEy~~~G~L~~~l~~~~~~l~~~~~~~i~~qi~~g-l~ 116 (258) T pfam07714 45 REEFLEEASIMKKLSH-----PNIV--RLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHGEKLTLKDLLQMALQIAKG-ME 116 (258) T ss_pred HHHHHHHHHHHHHCCC-----CCEE--EEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-HH T ss_conf 9999999999986899-----9884--28779978998899997689990899998658997999999999999999-99 Q ss_pred HHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 897448661787862289802895357434031216989 Q gi|254780623|r 277 HTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 277 qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) -+-..|+.|.|.-|.||+++.+|.+-+.|||+...+... T Consensus 117 yLH~~~iiHrDiKp~NiLl~~~~~~Kl~DFGla~~~~~~ 155 (258) T pfam07714 117 YLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDD 155 (258) T ss_pred HHHHCCEEECCCCCEEEEECCCCCEEEEECCCCEECCCC T ss_conf 998599751667630589879993999846787687799 No 75 >cd06627 STKc_Cdc7_like Serine/threonine kinases (STKs), cell division control protein 7 (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in Probab=98.80 E-value=2.9e-09 Score=90.92 Aligned_cols=137 Identities=18% Similarity=0.248 Sum_probs=89.6 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|++||-|.||+|+-+. +|+.||||+....-. +- + +. -+ T Consensus 6 ~~lG~G~fg~V~~a~~~~--tg~~vAiK~i~~~~~---------------------------~~-~---~~-------~~ 45 (254) T cd06627 6 DLIGKGAFGVVYKGLNLE--TGDFVAIKQISLEKI---------------------------KE-E---AL-------KS 45 (254) T ss_pred EEEECCCCCEEEEEEECC--CCCEEEEEEEEHHHC---------------------------CH-H---HH-------HH T ss_conf 697217681999999889--997999999865769---------------------------98-9---99-------99 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH----- Q ss_conf 599998898720244677664300001022178--3353002478632426773320022568999999999998----- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH----- 277 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q----- 277 (517) +.+|++.+.+++. |. |-+.|.-+.++ -.+||||++|-.+.+.- +..+. +.+..+..|+.| T Consensus 46 ~~~Ei~il~~l~H-----pn--Iv~~~~~~~~~~~~~ivmEy~~gg~L~~~l--~~~~~----l~e~~~~~~~~qi~~al 112 (254) T cd06627 46 IMQEIDLLKNLNH-----PN--IVKYIGSVKTSDSLYIILEYAENGSLRQII--KKFGK----FPESLVAVYVYQVLQGL 112 (254) T ss_pred HHHHHHHHHHCCC-----CC--CCCEEEEEEECCEEEEEEECCCCCCHHHHH--HHCCC----CCHHHHHHHHHHHHHHH T ss_conf 9999999986799-----89--995999999899999999687998499999--87499----99999999999999999 Q ss_pred --HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf --9744866178786228980289535743403121698 Q gi|254780623|r 278 --TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 278 --i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) +-..|+.|-|.-|.||+++.+|.+-+.|||+...++. T Consensus 113 ~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~ 151 (254) T cd06627 113 AYLHEQGVIHRDIKAANILTTKDGVVKLADFGVATKLSD 151 (254) T ss_pred HHHHHCCEEEEECCHHHEEECCCCCEEEECCCCCEECCC T ss_conf 999989948711477877887999989925888438467 No 76 >cd06621 PKc_MAPKK_Pek1_like Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharo Probab=98.80 E-value=1e-08 Score=86.68 Aligned_cols=143 Identities=17% Similarity=0.234 Sum_probs=85.5 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.||-|+||+|+-+. +|+.||||+.... . .+ +..+.+ T Consensus 7 ~~lG~G~fg~V~~a~~~~--~~~~~AiK~i~~~--------------------~-~~------------~~~~~~----- 46 (287) T cd06621 7 SRLGEGAGGSVTKCRLKN--TGMIFALKTITTD--------------------P-NP------------DLQKQI----- 46 (287) T ss_pred EEEECCCCEEEEEEEECC--CCEEEEEEEECCC--------------------C-CH------------HHHHHH----- T ss_conf 573048890999999899--9919999998303--------------------5-95------------899999----- Q ss_pred HHHHHHHHHHHHCCCCCCCC-CCCHHCCCHH-CCCCEEEEECCCCCCCCHHH-HHHHHCC-CHHH----HHHHHHHHHHH Q ss_conf 59999889872024467766-4300001022-17833530024786324267-7332002-2568----99999999999 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQG-FRVPKIDWNR-TERDVITMEWIDGVKISDTE-KLRACGH-DLER----LSVTLVQSFLL 276 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~-st~~VLvmE~i~G~~i~d~~-~l~~~~~-d~~~----la~~l~~~~~~ 276 (517) .+|.+-+..+. .|. |..=.+|.+- .+.-.+||||++|-.+.++- .....+. -... ++..++.+ +. T Consensus 47 -~~Ei~il~~l~-----HpnIv~~~~~~~~~~~~~~~ivmEy~~gg~L~~~~~~~~~~~~~~~e~~~~~i~~qil~g-L~ 119 (287) T cd06621 47 -LRELEINKSCK-----SPYIVKYYGAFLDESSSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKG-LS 119 (287) T ss_pred -HHHHHHHHHCC-----CCCCCCEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HH T ss_conf -99999998579-----999990978997088998999995469993999999998717999999999999999999-99 Q ss_pred HHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 89744866178786228980289535743403121698 Q gi|254780623|r 277 HTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 277 qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) -+-..|+.|-|.-|.||+++.+|.+-+.|||..+++.. T Consensus 120 ylH~~~iiHRDlKp~NILl~~~g~vKl~DFG~s~~~~~ 157 (287) T cd06621 120 YLHSRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVN 157 (287) T ss_pred HHHHCCCEECCCCHHHEEECCCCCEEEEECCCCCCCCC T ss_conf 99979904221674550067999899997855755577 No 77 >cd05064 PTKc_EphR_A10 Catalytic Domain of the Protein Tyrosine Kinase, Ephrin Receptor A10. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor Probab=98.80 E-value=2.6e-08 Score=83.63 Aligned_cols=143 Identities=10% Similarity=0.106 Sum_probs=88.7 Q ss_pred HHHH--HHHHHHHHHHHHHHHEECCC-CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 9867--66677888865555021288-87236876403104688777788999875321146854334691799999998 Q gi|254780623|r 121 CEFD--DPIAAASIAQVHPAVVHDIN-GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ 197 (517) Q Consensus 121 ~~fd--ePlasASiaQVh~A~l~d~~-~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 197 (517) ++|+ +-|++||-|+||+|.++-.+ .+..||||..+.+..+. T Consensus 5 ~~~~l~~~lG~G~Fg~Vy~g~~~~~~~~~~~VavK~l~~~~~~~------------------------------------ 48 (266) T cd05064 5 KSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDK------------------------------------ 48 (266) T ss_pred HHEEEEEEEEECCCCEEEEEEEECCCCEEEEEEEEEECCCCCHH------------------------------------ T ss_conf 99598569952778699999998899778999999978768979------------------------------------ Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHH Q ss_conf 87888655999988987202446776643000010221--783353002478632426773320022568---9999999 Q gi|254780623|r 198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQ 272 (517) Q Consensus 198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~ 272 (517) .+.+|.+|+..+.+++. |.| -+.|.-.+ ..-.|||||++|-++.+.-.-+....+... ++..++. T Consensus 49 ---~~~~f~~E~~~l~~l~H-----pnI--V~~~g~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~l~~~~~~~i~~~ia~ 118 (266) T cd05064 49 ---QRRGFLAEALTLGQFDH-----SNI--VRLEGVITRGNTMMIVTEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLAS 118 (266) T ss_pred ---HHHHHHHHHHHHHHCCC-----CCC--CCEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHH T ss_conf ---99999999999985899-----798--85999999899999999857999189998635799999999999999999 Q ss_pred HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHE Q ss_conf 99998974486617878622898028953574340312 Q gi|254780623|r 273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITG 310 (517) Q Consensus 273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg 310 (517) + +.-+-..|+.|.|.-|.|++++.++.+-+-|||... T Consensus 119 g-l~yLh~~~iiHrDlK~~NiLl~~~~~~Kl~DFG~~~ 155 (266) T cd05064 119 G-MKYLSEMGYVHKGLAAHKVLVNSDLVCKISGFRRLQ 155 (266) T ss_pred H-HHHHHHCCEEECCCCHHHEEECCCCCEEECCCCCCC T ss_conf 9-999875895506766550898899978988773644 No 78 >cd06648 STKc_PAK_II Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since g Probab=98.80 E-value=2.9e-08 Score=83.20 Aligned_cols=147 Identities=19% Similarity=0.246 Sum_probs=92.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH Q ss_conf 99999986766677888865555021288872368764031046887777889998753211468543346917999999 Q gi|254780623|r 116 IEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL 195 (517) Q Consensus 116 ~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 195 (517) +.+.|..+ +-|+.||-|.||+|+-+. +|+.||||+.... + . . - T Consensus 17 p~~~y~~l-~~IG~G~fg~V~~a~~~~--tg~~vAiK~i~~~--~--------------------~-----~-------~ 59 (285) T cd06648 17 PRSYLDNF-VKIGEGSTGIVCIATDKS--TGRQVAVKKMDLR--K--------------------Q-----Q-------R 59 (285) T ss_pred HHHHCEEE-EEECCCCCEEEEEEEECC--CCCEEEEEEEECC--C--------------------C-----C-------H T ss_conf 47870788-996237691999999889--9989999998411--1--------------------0-----1-------3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHH Q ss_conf 988788865599998898720244677664300001022178--3353002478632426773320022568---99999 Q gi|254780623|r 196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLER---LSVTL 270 (517) Q Consensus 196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l 270 (517) ... +.+|.+.+.++.. |. |-+.|.-+.+. -.|||||++|-.+.+.- .....+... ++..+ T Consensus 60 ~~~------~~~Ei~il~~l~H-----pn--IV~~~~~~~~~~~~~ivmE~~~gg~L~~~i--~~~~l~e~~~~~i~~qi 124 (285) T cd06648 60 REL------LFNEVVIMRDYQH-----PN--IVEMYSSYLVGDELWVVMEFLEGGALTDIV--THTRMNEEQIATVCLAV 124 (285) T ss_pred HHH------HHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHHH--HCCCCCHHHHHHHHHHH T ss_conf 999------9999999986899-----99--982999999899999999689999179998--73899999999999999 Q ss_pred HHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 999999897448661787862289802895357434031216989 Q gi|254780623|r 271 VQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 271 ~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) +.+ +.-+-..|+.|-|.-|.||+++.+|.+-+.|||+...++.+ T Consensus 125 l~a-L~yLH~~~IiHRDlKpeNILl~~~g~vKl~DFGla~~~~~~ 168 (285) T cd06648 125 LKA-LSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKE 168 (285) T ss_pred HHH-HHHHHHCCCEECCCCCHHEEECCCCCEEEEECCCCEECCCC T ss_conf 999-99999789352547713268879998899954320333667 No 79 >cd05574 STKc_phototropin_like STKc_phototropin_like: Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-terminal photosensory domain and a C-terminal catalyti Probab=98.80 E-value=1.2e-08 Score=86.15 Aligned_cols=141 Identities=12% Similarity=0.179 Sum_probs=90.4 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.||-|+||+|+-+. +|+.||||+....-. .. .+.+ ..+ T Consensus 7 ~~LG~G~fg~V~~~~~~~--t~~~~AiK~i~k~~~--------------------~~-------~~~~----~~~----- 48 (315) T cd05574 7 KLLGKGDVGRVYLVRLKG--TGKLFALKVLDKKEM--------------------IK-------RNKV----KRV----- 48 (315) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHHC--------------------CC-------HHHH----HHH----- T ss_conf 880128891999999999--998999999837886--------------------68-------7899----999----- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH--- Q ss_conf 5999988987202446776643000010221783--35300247863242677332002256899999999999897--- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL--- 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~--- 279 (517) .+|.+-+.++. .|. |.+.|.-+.+++ .|||||++|-.+.+.-.-...+ .+.+..+..|+.|++ T Consensus 49 -~~E~~il~~l~-----Hpn--Iv~l~~~~~~~~~~ylvmE~~~gG~L~~~l~~~~~~----~l~e~~~~~~~~qil~al 116 (315) T cd05574 49 -LTEQEILATLD-----HPF--LPTLYASFQTETYLCLVMDYCPGGELFRLLQRQPGK----CFPEEVARFYAAEVLLAL 116 (315) T ss_pred -HHHHHHHHHCC-----CCC--CCEEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCC----CCCHHHHHHHHHHHHHHH T ss_conf -99999998779-----989--990999998899899999778998389999860489----999999999999999999 Q ss_pred ----HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf ----448661787862289802895357434031216989 Q gi|254780623|r 280 ----RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 280 ----~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) ..|+.|-|.-|.||+++.+|.+.+.|||....++.. T Consensus 117 ~ylH~~~IvHRDlKPeNILl~~~g~vkl~DFgls~~~~~~ 156 (315) T cd05574 117 EYLHLLGIVYRDLKPENILLHEDGHIMLSDFDLSKQSDVE 156 (315) T ss_pred HHHHHCCEEEEECCHHEEEECCCCCEEEEECCCCEECCCC T ss_conf 9998587886204521079979997899546863233767 No 80 >cd05579 STKc_MAST_like STKc_MAST_like: Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harb Probab=98.79 E-value=1.1e-08 Score=86.46 Aligned_cols=132 Identities=21% Similarity=0.369 Sum_probs=84.0 Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67788886555502128887236876403104688777788999875321146854334691799999998878886559 Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR 206 (517) Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~ 206 (517) |++||-|+||+|+-+ .+|+.||||+....- ... + . .... +. T Consensus 1 iG~G~fg~V~~~~~~--~t~~~~AvK~i~~~~---~~~----------------~--------~----~~~~------~~ 41 (265) T cd05579 1 ISKGAYGRVFLAKKK--STGDIYAIKVIKKAD---MIR----------------K--------N----QVDQ------VL 41 (265) T ss_pred CCCCCCEEEEEEEEC--CCCCEEEEEEECHHH---CCC----------------H--------H----HHHH------HH T ss_conf 968819089999989--999899999981788---668----------------7--------8----9999------99 Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH------ Q ss_conf 99988987202446776643000010221783--3530024786324267733200225689999999999989------ Q gi|254780623|r 207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT------ 278 (517) Q Consensus 207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi------ 278 (517) +|...+.+++. | .|-++|.-+.+++ .+||||++|-.+.+. ++..+ .+-+..+..|+.|+ T Consensus 42 ~E~~~l~~l~h-----p--nIv~~~~~~~~~~~~~ivmE~~~gg~L~~~--l~~~~----~l~e~~~~~~~~qll~gl~~ 108 (265) T cd05579 42 TERNILSQAQN-----P--FVVKLYYSFQGKKNLYLVMEYLPGGDLASL--LENVG----SLDEDMARIYIAEIVLALEY 108 (265) T ss_pred HHHHHHHHCCC-----C--CCCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCC----CCCHHHHHHHHHHHHHHHHH T ss_conf 99999997799-----9--989199999989989999847999908999--98769----99999999999999999999 Q ss_pred -HHCCEECCCCCCCEEEEECCCCEEEEECCHHE Q ss_conf -74486617878622898028953574340312 Q gi|254780623|r 279 -LRDGFFHADLHPGNLFVDSKGYIVAVDMGITG 310 (517) Q Consensus 279 -~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg 310 (517) -..|+.|-|.-|.||+++.+|++-+.|||+.. T Consensus 109 lH~~~ivHRDIKpeNiLl~~~g~vKl~DFGls~ 141 (265) T cd05579 109 LHSNGIIHRDLKPDNILIDSNGHLKLTDFGLSK 141 (265) T ss_pred HHHCCCCCCCCCHHHEEECCCCCEEEEECCCCC T ss_conf 998884526575333668799988981045684 No 81 >cd05032 PTKc_InsR_like Catalytic Domain of Insulin Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological Probab=98.79 E-value=7.7e-08 Score=79.91 Aligned_cols=146 Identities=15% Similarity=0.216 Sum_probs=92.3 Q ss_pred HHHH--HHHHHHHHHHHHHHHEE---CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH Q ss_conf 9867--66677888865555021---288872368764031046887777889998753211468543346917999999 Q gi|254780623|r 121 CEFD--DPIAAASIAQVHPAVVH---DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL 195 (517) Q Consensus 121 ~~fd--ePlasASiaQVh~A~l~---d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 195 (517) +.++ +.|++||-|.||+|.++ +++.+++||||+.++.-.. T Consensus 6 ~~~~i~~~iG~G~fG~Vy~g~~~~~~~~~~~~~vAvK~~~~~~~~----------------------------------- 50 (277) T cd05032 6 EKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASM----------------------------------- 50 (277) T ss_pred HHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCH----------------------------------- T ss_conf 994973699217670999888668765776749999997566697----------------------------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHH---------HCCCHH Q ss_conf 9887888655999988987202446776643000010221--78335300247863242677332---------002256 Q gi|254780623|r 196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRA---------CGHDLE 264 (517) Q Consensus 196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~---------~~~d~~ 264 (517) .+..+|.+|++.+.+++. +. |-+.|.-.+ .+-.+||||++|-++.+.-.-.. ...+.. T Consensus 51 ----~~~~~f~~E~~il~~l~h-----~n--Iv~~~g~~~~~~~~~ivmEy~~~GsL~~~l~~~~~~~~~~~~~~~l~~~ 119 (277) T cd05032 51 ----RERIEFLNEASVMKEFNC-----HH--VVRLLGVVSTGQPTLVIMELMARGDLKSYLRSRRPEAENNPGLGPPTLQ 119 (277) T ss_pred ----HHHHHHHHHHHHHHHCCC-----CC--EEEEEEEEEECCEEEEEEECCCCCCHHHHHHHHCCHHHCCCCCCCCCHH T ss_conf ----899999999999987799-----88--8158678868998899998479992899998616401113667998999 Q ss_pred ---HHHHHHHH--HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf ---89999999--9999897448661787862289802895357434031216989 Q gi|254780623|r 265 ---RLSVTLVQ--SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 265 ---~la~~l~~--~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) .++..++. .|+ -..++.|.|.-|.||+++.++.+-+-|||+...++.. T Consensus 120 ~~~~i~~qia~gl~yL---H~~~IiHrDlK~~NILl~~~~~~Ki~DFGls~~~~~~ 172 (277) T cd05032 120 EFIQMAAEIADGMAYL---AAKKFVHRDLAARNCMVAEDLTVKIGDFGMARDIYET 172 (277) T ss_pred HHHHHHHHHHHHHHHH---HHCCCCCCCCCCCEEEECCCCCEEECCCCCCEECCCC T ss_conf 9999999999999999---8689544778877489879998897314100033667 No 82 >cd05572 STKc_cGK_PKG STKc_cGK_PKG: Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble pr Probab=98.78 E-value=1.1e-08 Score=86.62 Aligned_cols=137 Identities=20% Similarity=0.282 Sum_probs=87.8 Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67788886555502128887236876403104688777788999875321146854334691799999998878886559 Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR 206 (517) Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~ 206 (517) |++||-|+||+|+-+. +|+.||+|+....-. .. ..... .+. T Consensus 1 LG~G~fg~V~~~~~~~--t~~~~AiK~i~k~~~--------------------~~-----------~~~~~------~~~ 41 (262) T cd05572 1 LGVGGFGRVELVQYKS--KNRTFALKCVKKRHI--------------------VE-----------TGQQE------HIF 41 (262) T ss_pred CCCCCCEEEEEEEECC--CCCEEEEEEECHHHC--------------------CC-----------HHHHH------HHH T ss_conf 9778366999999889--998999999857886--------------------68-----------67999------999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH------- Q ss_conf 9998898720244677664300001022178--3353002478632426773320022568999999999998------- Q gi|254780623|r 207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH------- 277 (517) Q Consensus 207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q------- 277 (517) +|.+.+..+. .|. |.+.|.-+-++ -.+||||++|-.+.+. +...+. +-+..+..|+.| T Consensus 42 ~E~~il~~l~-----Hpn--Iv~l~~~~~~~~~~yivmE~~~gg~L~~~--i~~~~~----l~e~~~~~~~~qil~al~y 108 (262) T cd05572 42 SEKEILEECN-----SPF--IVRLYRTFKDKKYIYFLMEYCLGGELWTI--LRDRGL----LDEYTARFYTACVVEAFEY 108 (262) T ss_pred HHHHHHHHCC-----CCC--CCCEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCC----CCHHHHHHHHHHHHHHHHH T ss_conf 9999998779-----989--99789999989999999927999898999--998499----9999999999999999999 Q ss_pred HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 97448661787862289802895357434031216989 Q gi|254780623|r 278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) +-..|+.|-|.-|.||+++.+|.+-+.|||....+... T Consensus 109 lH~~~IiHRDiKpeNILi~~~g~vKl~DFG~a~~~~~~ 146 (262) T cd05572 109 LHNRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSG 146 (262) T ss_pred HHHCCCEEEECCCCCCCCCCCCCEEECCCCEEEECCCC T ss_conf 99789476056875413257999886404600686788 No 83 >cd06619 PKc_MKK5 Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 ( Probab=98.78 E-value=1.8e-08 Score=84.89 Aligned_cols=140 Identities=20% Similarity=0.232 Sum_probs=87.1 Q ss_pred HHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 76667788886555502128887236876403104688777788999875321146854334691799999998878886 Q gi|254780623|r 124 DDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM 203 (517) Q Consensus 124 dePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El 203 (517) .|-|++||-|.||+|+-+. +|+.||||+.+.... .+..+.+ T Consensus 6 ~e~iG~G~fg~Vy~a~~~~--t~~~vAiK~i~~~~~---------------------------------~~~~~~~---- 46 (279) T cd06619 6 QEILGHGNGGTVYKAYHLL--TRRILAVKVIPLDIT---------------------------------VELQKQI---- 46 (279) T ss_pred EEEEECCCCEEEEEEEECC--CCCEEEEEEECHHCC---------------------------------HHHHHHH---- T ss_conf 7898517892999999999--997999999884319---------------------------------8999999---- Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 5599998898720244677664300001022178--33530024786324267733200225689999999999989744 Q gi|254780623|r 204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRD 281 (517) Q Consensus 204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~ 281 (517) .+|.+-+.+.. .|. |=+.|..+.++ -.+||||++|-.++....+.+. ....++..++.+ +.-+-.. T Consensus 47 --~~Ei~il~~l~-----hpn--Iv~~~~~~~~~~~~~iv~E~~~gg~L~~~~~~~e~--~~~~i~~qi~~a-L~ylH~~ 114 (279) T cd06619 47 --MSELEILYKCD-----SPY--IIGFYGAFFVENRISICTEFMDGGSLDVYRKIPEH--VLGRIAVAVVKG-LTYLWSL 114 (279) T ss_pred --HHHHHHHHHCC-----CCC--CCEEEEEEEECCEEEEEEECCCCCCHHHHHCCCHH--HHHHHHHHHHHH-HHHHHHC T ss_conf --99999998679-----999--99197999989998999971699859998568999--999999999999-9999978 Q ss_pred CEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 866178786228980289535743403121698 Q gi|254780623|r 282 GFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 282 GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) |+.|-|.-|+||+++.+|.+-+.|||....+.. T Consensus 115 ~iiHRDiKp~NILl~~~g~vKl~DFGla~~~~~ 147 (279) T cd06619 115 KILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVN 147 (279) T ss_pred CEEECCCCCCCCCCCCCCCEEECCCCCCEECCC T ss_conf 905353677664388999999855836425478 No 84 >cd07846 STKc_CDKL2_3 The catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3 subfamily. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, a Probab=98.78 E-value=1.3e-08 Score=85.83 Aligned_cols=142 Identities=17% Similarity=0.278 Sum_probs=87.2 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.||-|+||+|.-++ +|+.||||+..+.-.. ++..+.. T Consensus 7 ~~iG~G~fg~Vy~~~~~~--t~~~vAiK~~~~~~~~--------------------------------~~~~~~~----- 47 (286) T cd07846 7 GLVGEGSYGMVMKCRHKE--TGQIVAIKKFLESEDD--------------------------------KMVKKIA----- 47 (286) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCCC--------------------------------HHHHHHH----- T ss_conf 188337087999999889--9989999998210156--------------------------------7889999----- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHC Q ss_conf 599998898720244677664300001022178335300247863242677332002256---89999999999989744 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLE---RLSVTLVQSFLLHTLRD 281 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~l~~~~~~qi~~~ 281 (517) .+|...+.+++. ..-|..=.++. ..+.-.+||||++|-.+.+..... .+.+.. .++..++.+. .-+-.. T Consensus 48 -~~Ei~il~~l~H----pnIv~~~~~~~-~~~~~~iv~E~~~~~~l~~l~~~~-~~l~~~~i~~i~~qil~al-~ylH~~ 119 (286) T cd07846 48 -MREIRMLKQLRH----ENLVNLIEVFR-RKKRLYLVFEFVDHTVLDDLEKYP-NGLDESRVRKYLFQVLRGI-EFCHSH 119 (286) T ss_pred -HHHHHHHHHCCC----CCCCCEEEEEE-ECCEEEEEEECCCCCCHHHHHHCC-CCCCHHHHHHHHHHHHHHH-HHHHHC T ss_conf -999999986799----79991999999-899899999589988299998626-9989999999999999999-999978 Q ss_pred CEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf 86617878622898028953574340312169 Q gi|254780623|r 282 GFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 282 GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) |+.|.|.-|.||+++.+|.+-+.|||....+. T Consensus 120 ~iiHRDlKpeNILl~~~~~iKl~DFGla~~~~ 151 (286) T cd07846 120 NIIHRDIKPENILVSQSGVVKLCDFGFARTLA 151 (286) T ss_pred CCEECCCCHHHEEECCCCCEEEEECCCHHHCC T ss_conf 93526587899678889989983323034306 No 85 >cd06656 STKc_PAK3 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the b Probab=98.78 E-value=1.8e-08 Score=84.83 Aligned_cols=151 Identities=16% Similarity=0.227 Sum_probs=94.4 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH Q ss_conf 04788999999867666778888655550212888723687640310468877778899987532114685433469179 Q gi|254780623|r 111 ALKAPIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSA 190 (517) Q Consensus 111 elg~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~ 190 (517) ..|.|-++ |.- -+.|+.|+-|.||+|.-.. +|+.||||+.... . .+. T Consensus 13 s~gdp~~~-Y~~-~~~iG~G~fg~Vy~a~~~~--tg~~vAiK~i~~~--------------------~-~~~-------- 59 (297) T cd06656 13 SVGDPKKK-YTR-FEKIGQGASGTVYTAIDIA--TGQEVAIKQMNLQ--------------------Q-QPK-------- 59 (297) T ss_pred CCCCCCCC-EEE-EEEECCCCCEEEEEEEECC--CCCEEEEEEEEHH--------------------H-CCH-------- T ss_conf 99996603-188-7897048581999999889--9989999998733--------------------2-762-------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHH--- Q ss_conf 99999988788865599998898720244677664300001022178--3353002478632426773320022568--- Q gi|254780623|r 191 VVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLER--- 265 (517) Q Consensus 191 ~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~--- 265 (517) ... +.+|...+.++. .|. |-+.|..+.+. -.+||||++|-.+.+.- .....+-.. T Consensus 60 -----~~~------~~~Ei~~l~~l~-----Hpn--Iv~~~~~~~~~~~~~iVmEy~~gg~L~~~l--~~~~l~e~~~~~ 119 (297) T cd06656 60 -----KEL------IINEILVMRENK-----NPN--IVNYLDSYLVGDELWVVMEYLAGGSLTDVV--TETCMDEGQIAA 119 (297) T ss_pred -----HHH------HHHHHHHHHHCC-----CCC--CCEEEEEEEECCEEEEEEECCCCCCHHHHH--HCCCCCHHHHHH T ss_conf -----899------999999998679-----999--890999999899999999558999289987--516999999999 Q ss_pred HHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 99999999999897448661787862289802895357434031216989 Q gi|254780623|r 266 LSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 266 la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) ++..++.+ +.-+-..|+.|-|.-|.||+++.+|.+-+.|||+...++++ T Consensus 120 i~~qil~a-L~ylH~~~IiHRDlKP~NILl~~~g~vKL~DFGla~~~~~~ 168 (297) T cd06656 120 VCRECLQA-LDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE 168 (297) T ss_pred HHHHHHHH-HHHHHHCCCCCCCCCHHHEEECCCCCEEEECCCCCEECCCC T ss_conf 99999999-99999789550418816468989999999858888576788 No 86 >cd05068 PTKc_Frk_like Catalytic Domain of Fyn-related kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a Probab=98.78 E-value=6.2e-08 Score=80.65 Aligned_cols=142 Identities=17% Similarity=0.218 Sum_probs=90.0 Q ss_pred HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 9867--66677888865555021288872368764031046887777889998753211468543346917999999988 Q gi|254780623|r 121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV 198 (517) Q Consensus 121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 198 (517) .+++ +-|++||-|.||+|++++ ..+||||+.+++-. + T Consensus 6 ~~~~~~~~iG~G~fg~Vy~~~~~~---~~~VAvK~~~~~~~---------------------------~----------- 44 (261) T cd05068 6 TSIQLLRKLGAGQFGEVWEGLWNN---TTPVAVKTLKPGTM---------------------------D----------- 44 (261) T ss_pred HHEEEEEEEECCCCEEEEEEEECC---CCEEEEEEECCCCC---------------------------C----------- T ss_conf 996986798318780999999899---98999999847889---------------------------9----------- Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHH-HCCCHHH---HHHHHHH Q ss_conf 7888655999988987202446776643000010221--78335300247863242677332-0022568---9999999 Q gi|254780623|r 199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRA-CGHDLER---LSVTLVQ 272 (517) Q Consensus 199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~-~~~d~~~---la~~l~~ 272 (517) +=+|.+|++.+.+++. |. |-+.|.-.+ ..-.+||||++|-.+.+.-.-.. ...+... ++..++. T Consensus 45 ---~~~~~~E~~~l~~l~H-----pn--Iv~~~g~~~~~~~~~iv~E~~~~G~L~~~l~~~~~~~l~~~~~~~i~~qia~ 114 (261) T cd05068 45 ---PKDFLAEAQIMKKLRH-----PK--LIQLYAVCTLEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVAS 114 (261) T ss_pred ---HHHHHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH T ss_conf ---9999999999986899-----68--9909999998998999999069998999996378888999999999999999 Q ss_pred HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 999989744866178786228980289535743403121698 Q gi|254780623|r 273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) . +.-+-..|+.|.|.-|.||+++.+|++.+-|||+...+.. T Consensus 115 g-l~yLH~~~iiHrDLKp~NILl~~~~~vKl~DFGls~~~~~ 155 (261) T cd05068 115 G-MAYLEAQNYIHRDLAARNVLVGENNICKVADFGLARVIKE 155 (261) T ss_pred H-HHHHHHCCEECCCCCCCEEEECCCCCEEEEECCCCEECCC T ss_conf 9-9999867972065661558988999689983432124468 No 87 >cd06640 STKc_MST4 Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Probab=98.77 E-value=1.5e-08 Score=85.36 Aligned_cols=148 Identities=23% Similarity=0.312 Sum_probs=91.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH Q ss_conf 99999986766677888865555021288872368764031046887777889998753211468543346917999999 Q gi|254780623|r 116 IEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL 195 (517) Q Consensus 116 ~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 195 (517) +++.|... +.|++||-|.||+|+-. .+|+.||||+....- .. +++ T Consensus 2 P~e~y~~l-~~iG~G~fg~Vy~a~~~--~t~~~vAiK~i~~~~---------------------~~-----------~~~ 46 (277) T cd06640 2 PEELFTKL-ERIGKGSFGEVFKGIDN--RTQQVVAIKIIDLEE---------------------AE-----------DEI 46 (277) T ss_pred HHHCEEEE-EEECCCCCCEEEEEEEC--CCCCEEEEEEECHHH---------------------CH-----------HHH T ss_conf 34741988-99713889099999989--999799999986787---------------------84-----------799 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHH---HHH Q ss_conf 988788865599998898720244677664300001022178--335300247863242677332002256899---999 Q gi|254780623|r 196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLS---VTL 270 (517) Q Consensus 196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la---~~l 270 (517) -++.+|.+-+.++.. |. |-+.|..+.+. -.+||||++|-.+.+. ++....+...++ ..+ T Consensus 47 -------~~~~~Ei~il~~l~h-----pn--Iv~~~~~~~~~~~~~ivmEy~~gg~l~~~--i~~~~~~e~~~~~~~~qi 110 (277) T cd06640 47 -------EDIQQEITVLSQCDS-----PY--VTKYYGSYLKGTKLWIIMEYLGGGSALDL--LRAGPFDEFQIATMLKEI 110 (277) T ss_pred -------HHHHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHCCCCCHHHHHHHHHHH T ss_conf -------999999999986799-----88--89499999989999999979997939999--863999999999999999 Q ss_pred HHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 999999897448661787862289802895357434031216989 Q gi|254780623|r 271 VQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 271 ~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) +.+ +.-+-..|+.|-|.-|.||+++.+|.+-+.|||+.+.+++. T Consensus 111 ~~a-L~ylH~~~iiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~ 154 (277) T cd06640 111 LKG-LDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDT 154 (277) T ss_pred HHH-HHHHHHCCCCCCCCCHHHEEECCCCCEEEEECCCCCCCCCC T ss_conf 999-99999779823345636604779999999638765166788 No 88 >cd06637 STKc_TNIK Serine/threonine kinases (STKs),Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytos Probab=98.77 E-value=8e-09 Score=87.54 Aligned_cols=141 Identities=13% Similarity=0.191 Sum_probs=85.4 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.|+-|.||+|+-.. +|+.||||+....-. . . + + T Consensus 12 ~~IG~G~fg~Vy~a~~~~--~~~~~AiK~i~~~~~---------------------------~-~---~----------~ 48 (272) T cd06637 12 ELVGNGTYGQVYKGRHVK--TGQLAAIKVMDVTGD---------------------------E-E---E----------E 48 (272) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCC---------------------------C-H---H----------H T ss_conf 799228782999999989--997999999866878---------------------------6-9---9----------9 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--------CCCCEEEEECCCCCCCCHHHHHHH-HCCCHH---HHHHHHHH Q ss_conf 599998898720244677664300001022--------178335300247863242677332-002256---89999999 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNR--------TERDVITMEWIDGVKISDTEKLRA-CGHDLE---RLSVTLVQ 272 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--------st~~VLvmE~i~G~~i~d~~~l~~-~~~d~~---~la~~l~~ 272 (517) +.+|.+-+.++.. .+.| -..|.-+ .+.=.+||||++|-.+.+.-.... ....-. .++..++. T Consensus 49 ~~~E~~~l~~~~~----h~ni--~~~~~~~~~~~~~~~~~~~~ivmE~~~~G~L~~~l~~~~~~~~~e~~i~~i~~qi~~ 122 (272) T cd06637 49 IKQEINMLKKYSH----HRNI--ATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILR 122 (272) T ss_pred HHHHHHHHHHCCC----CCCE--EEEEEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH T ss_conf 9999999985659----9807--489999996578887888999995889997999998716899999999999999999 Q ss_pred HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 9999897448661787862289802895357434031216989 Q gi|254780623|r 273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) + +.-+-..|+.|-|.-|.||+++.+|.+-+.|||+...++.. T Consensus 123 g-l~ylH~~~iiHRDlKp~NILl~~~~~vKi~DFGls~~~~~~ 164 (272) T cd06637 123 G-LSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRT 164 (272) T ss_pred H-HHHHHHCCCCCCCCCHHHEEECCCCCEEEEECCCCEECCCC T ss_conf 9-99999899156746789989879998999858886587667 No 89 >cd05577 STKc_GRK STKc_GRK: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diver Probab=98.77 E-value=8.3e-08 Score=79.65 Aligned_cols=144 Identities=17% Similarity=0.182 Sum_probs=87.1 Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67788886555502128887236876403104688777788999875321146854334691799999998878886559 Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR 206 (517) Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~ 206 (517) |++||-|.||+|+-++ +|+.||||+....--. . ++ .+-... T Consensus 1 iG~G~fg~V~~~~~~~--~~~~~AvK~i~~~~~~-----------------~--------------~~------~~~~~~ 41 (277) T cd05577 1 LGKGGFGEVCACQVRA--TGKMYACKKLDKKRIK-----------------K--------------RK------GETMAL 41 (277) T ss_pred CCCCCCEEEEEEEECC--CCCEEEEEEECHHHCC-----------------C--------------HH------HHHHHH T ss_conf 9767486999999989--9989999998478803-----------------0--------------56------799999 Q ss_pred HHHHHHHHHHCCCCCCCCC-CCHHCCCHHCCCCEEEEECCCCCCCCHHH-HHHHHCCCHH---HHHHHHHHHHHHHHHHC Q ss_conf 9998898720244677664-30000102217833530024786324267-7332002256---89999999999989744 Q gi|254780623|r 207 LEAAAFSEMAENTVKDQGF-RVPKIDWNRTERDVITMEWIDGVKISDTE-KLRACGHDLE---RLSVTLVQSFLLHTLRD 281 (517) Q Consensus 207 ~Ea~n~~~~~~~~~~~~~v-~vP~vy~~~st~~VLvmE~i~G~~i~d~~-~l~~~~~d~~---~la~~l~~~~~~qi~~~ 281 (517) +|+..+..+.. +.| .+=.+|. -.+.-.+||||++|-.+.+.- .....+.+.+ .++..++.+ +.-+-.. T Consensus 42 ~E~~il~~l~~-----p~iv~~~~~~~-~~~~~~~vme~~~ggdL~~~l~~~~~~~l~e~~~~~~~~ql~~a-l~ylH~~ 114 (277) T cd05577 42 NEKIILEKVSS-----PFIVSLAYAFE-TKDALCLVLTLMNGGDLKFHIYNVGNPGFDEARARFYAAEIICG-LEHLHRR 114 (277) T ss_pred HHHHHHHHCCC-----CCCCEEEEEEE-ECCEEEEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHH-HHHHHHC T ss_conf 99999987799-----98993989999-89989999996579838999986389998999999999999999-9999878 Q ss_pred CEECCCCCCCEEEEECCCCEEEEECCHHEECCHHH Q ss_conf 86617878622898028953574340312169899 Q gi|254780623|r 282 GFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRE 316 (517) Q Consensus 282 GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~ 316 (517) |+.|-|.-|.||+++.+|.+-+.|||+...++... T Consensus 115 ~IiHRDiKp~NiLl~~~g~iKl~DFGla~~~~~~~ 149 (277) T cd05577 115 RIVYRDLKPENILLDDHGHIRISDLGLAVEFPEGK 149 (277) T ss_pred CEEECCCCCCCCCCCCCCCEEEEECCEEEECCCCC T ss_conf 92506668644130689978972668147867997 No 90 >cd05600 STKc_Sid2p_Dbf2p STKc_Sid2p_Dbf2p: Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) a Probab=98.77 E-value=2.2e-08 Score=84.10 Aligned_cols=224 Identities=18% Similarity=0.199 Sum_probs=116.5 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|++||-|+||+|+-++ +|+.||||+.+..... +. ++ ...+. T Consensus 7 ~~iG~G~fG~V~~a~~k~--t~~~~AiK~i~k~~~~--------------------------~~----~~-~~~~~---- 49 (333) T cd05600 7 TQVGQGGYGQVFLAKKKD--TGEIVALKRMKKSLLF--------------------------KL----NE-VRHVL---- 49 (333) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHCC--------------------------CH----HH-HHHHH---- T ss_conf 783317884999999889--9989999998578865--------------------------87----99-99999---- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH----- Q ss_conf 599998898720244677664300001022178--3353002478632426773320022568999999999998----- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH----- 277 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q----- 277 (517) +|..-+...+ .|.| -+.|..+.++ -.|||||++|-.+.+. +...+ .+.+.-+..|+.| T Consensus 50 --~E~~il~~~~-----hp~I--v~l~~~f~d~~~lylvmEy~~gGdL~~~--l~~~~----~l~e~~a~~~~~qil~aL 114 (333) T cd05600 50 --TERDILTTTK-----SEWL--VKLLYAFQDDEYLYLAMEYVPGGDFRTL--LNNLG----VLSEDHARFYMAEMFEAV 114 (333) T ss_pred --HHHHHHHHCC-----CCCC--CEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCC----CCCHHHHHHHHHHHHHHH T ss_conf --9999998679-----9998--8599999989999999973799819999--98759----999999999999999999 Q ss_pred --HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHH Q ss_conf --974486617878622898028953574340312169899999997669997187278999999841266778936899 Q gi|254780623|r 278 --TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFA 355 (517) Q Consensus 278 --i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~ 355 (517) +-..|+.|-|.-|.||+++.+|.+-+.|||+...+..... . -.| .+...-++.+ T Consensus 115 ~ylH~~~IiHRDLKPeNILl~~~g~iKL~DFGlak~~~~~~~--------------------t--~~G-Tp~YmAPEvl- 170 (333) T cd05600 115 DALHELGYIHRDLKPENFLIDASGHIKLTDFGLSKGIVTYAN--------------------S--VVG-SPDYMAPEVL- 170 (333) T ss_pred HHHHHCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCC--------------------C--EEC-CCCCCCHHHH- T ss_conf 999858689862476542326789889987664546755568--------------------5--116-8431089886- Q ss_pred HHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH---HHCCCCCHHHHHHHHHHHHH Q ss_conf 999985210013343331135689999975452797128889999999999884998---76889888999999999999 Q gi|254780623|r 356 QAIRAIGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVAR---MLNPEFNMWVSSEPIVEEWI 432 (517) Q Consensus 356 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~~~ll~r~l~~lEG~~~---~LdP~~d~~~~~~p~~~~~l 432 (517) ...-++...+-+++|-++.+++.-..-|.-.-|.+.. ..+.....+.. .-.|..++-..++.++++++ T Consensus 171 ------~~~~y~~~~DiWSlGvilyemltG~~PF~g~~~~~~~---~~I~~~~~~~~~P~~~~~~~~~S~~a~DLI~kLL 241 (333) T cd05600 171 ------RGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETW---ENLKYWKETLQRPVYDDPRFNLSDEAWDLITKLI 241 (333) T ss_pred ------CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH---HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHC T ss_conf ------8999892788898999999998787998998989999---9997442122688766765677999999999886 Q ss_pred H Q ss_conf 8 Q gi|254780623|r 433 R 433 (517) Q Consensus 433 ~ 433 (517) . T Consensus 242 ~ 242 (333) T cd05600 242 N 242 (333) T ss_pred C T ss_conf 7 No 91 >cd05614 STKc_MSK2_N STKc_MSK2_N: Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the Probab=98.76 E-value=2.5e-08 Score=83.78 Aligned_cols=143 Identities=15% Similarity=0.234 Sum_probs=83.1 Q ss_pred HHHHHHHHHHHHHHHEE-CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021-28887236876403104688777788999875321146854334691799999998878886 Q gi|254780623|r 125 DPIAAASIAQVHPAVVH-DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM 203 (517) Q Consensus 125 ePlasASiaQVh~A~l~-d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El 203 (517) +.|+.||-|+||.|+-. +..+|+.||+|+.+..-. ..+ .... ... T Consensus 6 k~LG~G~fG~Vylv~~~~~~~tg~~~AiK~i~k~~~----------------~~~----------~~~~----~~~---- 51 (332) T cd05614 6 KVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAAL----------------VQK----------AKTV----EHT---- 51 (332) T ss_pred EEEECCCCEEEEEEEECCCCCCCCEEEEEEEEHHHH----------------CCC----------HHHH----HHH---- T ss_conf 795138880899999853078895899999817884----------------221----------7899----999---- Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHC-CCH---HHHHHHHHHHHHHH Q ss_conf 5599998898720244677664300001022178--33530024786324267733200-225---68999999999998 Q gi|254780623|r 204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACG-HDL---ERLSVTLVQSFLLH 277 (517) Q Consensus 204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~-~d~---~~la~~l~~~~~~q 277 (517) ..|.+.++..+ +.+.| -+.|..+.++ -.+||||++|-.+.+. +...+ .+. +.++..++.+ +.- T Consensus 52 --~~E~~il~~~~----~~p~i--v~l~~~f~~~~~~ylVmEy~~gG~L~~~--l~~~~~l~e~~~~~~~~qi~~a-L~y 120 (332) T cd05614 52 --RTERNVLEHVR----QSPFL--VTLHYAFQTEAKLHLILDYVSGGEMFTH--LYQRDNFSEDEVRFYSGEIILA-LEH 120 (332) T ss_pred --HHHHHHHHHCC----CCCCE--EEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHH T ss_conf --99999999626----89977--8999999879989999967799989999--9864999999999999999999-999 Q ss_pred HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC Q ss_conf 97448661787862289802895357434031216 Q gi|254780623|r 278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL 312 (517) Q Consensus 278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l 312 (517) +-..|+.|-|.-|.||+++.+|.+.+.|||+...+ T Consensus 121 LH~~gIiHRDlKPeNILl~~~g~ikL~DFGlak~~ 155 (332) T cd05614 121 LHKLGIVYRDIKLENILLDSEGHVVLTDFGLSKEF 155 (332) T ss_pred HHHCCCEECCCCHHHEEECCCCCEEEECCHHHHHH T ss_conf 98788652567667700358998896024013655 No 92 >cd05595 STKc_PKB_beta STKc_PKB_beta: Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insuli Probab=98.76 E-value=5.7e-08 Score=80.96 Aligned_cols=136 Identities=18% Similarity=0.197 Sum_probs=82.8 Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67788886555502128887236876403104688777788999875321146854334691799999998878886559 Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR 206 (517) Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~ 206 (517) |+.||-|+|++|+-+. +|+.||+||.+.... +.. ++. .... T Consensus 3 lG~G~fG~V~~~~~k~--tg~~~AiKvi~k~~~--~~~----------------------------~~~-------~~~~ 43 (323) T cd05595 3 LGKGTFGKVILVREKA--TGRYYAMKILRKEVI--IAK----------------------------DEV-------AHTV 43 (323) T ss_pred EEECCCEEEEEEEECC--CCCEEEEEEEEHHHC--CCH----------------------------HHH-------HHHH T ss_conf 5227284999999889--998999999806885--598----------------------------999-------9999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHH----HHHHHHHHHHHHHHH Q ss_conf 99988987202446776643000010221783--353002478632426773320022568----999999999998974 Q gi|254780623|r 207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLER----LSVTLVQSFLLHTLR 280 (517) Q Consensus 207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~----la~~l~~~~~~qi~~ 280 (517) +|.+.+.+++ +|. |-+.|..+.+++ .+||||++|-.+.+. +...+.-... ++..++.+ +.-+-. T Consensus 44 ~E~~il~~l~-----Hp~--Iv~l~~~f~~~~~lylVmEy~~gGdL~~~--l~~~~~~~e~~a~~~~~qi~~a-L~yLH~ 113 (323) T cd05595 44 TESRVLQNTR-----HPF--LTALKYAFQTHDRLCFVMEYANGGELFFH--LSRERVFTEERARFYGAEIVSA-LEYLHS 113 (323) T ss_pred HHHHHHHHCC-----CCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHHH T ss_conf 9999998679-----998--88599999989999999965699848999--9865999999999999999999-999987 Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 4866178786228980289535743403121 Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) .|+.|-|.-|.||+++.+|.+-+.|||++.. T Consensus 114 ~~IiHRDLKPeNILl~~~g~iKL~DFGlak~ 144 (323) T cd05595 114 RDVVYRDIKLENLMLDKDGHIKITDFGLCKE 144 (323) T ss_pred CCEECCCCCHHHCCCCCCCCEEECCCCCCEE T ss_conf 7902365471222303689665223240022 No 93 >cd06626 STKc_MEKK4 Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, Probab=98.76 E-value=2.3e-08 Score=84.00 Aligned_cols=141 Identities=22% Similarity=0.239 Sum_probs=89.8 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-|+.||-|.||+|+-.. +|+.||||+.+- +. .+. . ..-. T Consensus 6 ~~lG~G~~g~Vy~~~~~~--~~~~vAiK~i~~--------------------~~-------~~~---------~--~~~~ 45 (264) T cd06626 6 NKIGGGTFGKVYTAVNLD--TGELMAVKEIRI--------------------QD-------NDP---------K--TIKE 45 (264) T ss_pred CEEECCCCEEEEEEEECC--CCCEEEEEEECH--------------------HH-------CCH---------H--HHHH T ss_conf 498217481999999889--998999999810--------------------00-------897---------9--9999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHHHCCCHHH----HHHHHHHHHHHHH Q ss_conf 599998898720244677664300001022--1783353002478632426773320022568----9999999999989 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRACGHDLER----LSVTLVQSFLLHT 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~----la~~l~~~~~~qi 278 (517) +.+|.+.+.++.. |.| -+.|.-+ ...-.|||||++|-.+.+.- +..+..... ++..++.+. .-+ T Consensus 46 ~~~E~~il~~l~H-----pnI--v~~~~~~~~~~~~~lvmE~~~~g~L~~~l--~~~~~~~e~~~~~~~~qi~~al-~yl 115 (264) T cd06626 46 IADEMKVLELLKH-----PNL--VKYYGVEVHREKVYIFMEYCSGGTLEELL--EHGRILDEHVIRVYTLQLLEGL-AYL 115 (264) T ss_pred HHHHHHHHHHCCC-----CCC--CEEEEEEEECCEEEEEEECCCCCCHHHHH--HHCCCCCHHHHHHHHHHHHHHH-HHH T ss_conf 9999999987799-----898--94999998899999999789999699999--7079999999999999999999-999 Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 7448661787862289802895357434031216989 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) -..|+.|-|.-|.||+++.+|.+-+.|||+...++.. T Consensus 116 H~~~iiHRDlKp~NILl~~~~~vKl~DFG~a~~~~~~ 152 (264) T cd06626 116 HSHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNN 152 (264) T ss_pred HHCCEEECCCCHHHEEECCCCCEEEEECCCCEECCCC T ss_conf 9899453755789956889996999547674586778 No 94 >cd05073 PTKc_Hck Catalytic Domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase. Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa Probab=98.76 E-value=1.3e-08 Score=85.81 Aligned_cols=142 Identities=19% Similarity=0.257 Sum_probs=93.0 Q ss_pred HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 99867--6667788886555502128887236876403104688777788999875321146854334691799999998 Q gi|254780623|r 120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ 197 (517) Q Consensus 120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 197 (517) .++|+ +.|++|+-|.||+|+... +.+||||+.+++-. + . T Consensus 5 ~~~~~l~~~iG~G~fG~Vy~~~~~~---~~~VAvK~l~~~~~---------------------------~----~----- 45 (260) T cd05073 5 RESLKLEKKLGAGQFGEVWMATYNK---HTKVAVKTMKPGSM---------------------------S----V----- 45 (260) T ss_pred HHHEEEEEEEECCCCCEEEEEEECC---CCEEEEEEECCCCC---------------------------C----H----- T ss_conf 7997972399417886999999899---99999999856767---------------------------8----9----- Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHH-HCCCHH---HHHHHHH Q ss_conf 878886559999889872024467766430000102217--8335300247863242677332-002256---8999999 Q gi|254780623|r 198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRA-CGHDLE---RLSVTLV 271 (517) Q Consensus 198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~-~~~d~~---~la~~l~ 271 (517) -+|.+|+..+.+++. |.|. +.|. .|+ .-.+||||++|-++.+.-.-.. ...... .++..++ T Consensus 46 -----~~f~~E~~~l~~l~H-----pniv--~~~~-~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~~qia 112 (260) T cd05073 46 -----EAFLAEANVMKTLQH-----DKLV--KLHA-VVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIA 112 (260) T ss_pred -----HHHHHHHHHHHHCCC-----CCEE--EEEE-EEECCCEEEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH T ss_conf -----999999999986899-----8886--4999-99469539999916998999998636677789999999999999 Q ss_pred HHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 9999989744866178786228980289535743403121698 Q gi|254780623|r 272 QSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 272 ~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) .. +..+-..|+.|.|.-|+|++++.++.+-+.|||+...+++ T Consensus 113 ~g-l~yLH~~~iiHrDlKp~NiLl~~~~~~Kl~DFGls~~~~~ 154 (260) T cd05073 113 EG-MAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIED 154 (260) T ss_pred HH-HHHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCEECCC T ss_conf 99-9999869926676772007886998789985688658579 No 95 >cd06641 STKc_MST3 Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Probab=98.76 E-value=1.7e-08 Score=85.00 Aligned_cols=144 Identities=23% Similarity=0.317 Sum_probs=91.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH Q ss_conf 99999986766677888865555021288872368764031046887777889998753211468543346917999999 Q gi|254780623|r 116 IEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL 195 (517) Q Consensus 116 ~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 195 (517) +++.|... +.|++|+-|.||+|+-+ .+|+.||||+....- .. ++. T Consensus 2 p~e~y~~l-~~iG~G~fg~Vy~a~~~--~~~~~vAiK~i~~~~---------------------~~-----------~~~ 46 (277) T cd06641 2 PEELFTKL-EKIGKGSFGEVFKGIDN--RTQKVVAIKIIDLEE---------------------AE-----------DEI 46 (277) T ss_pred HHHCEEEE-EEECCCCCEEEEEEEEC--CCCCEEEEEEECHHH---------------------CH-----------HHH T ss_conf 34740985-89603878099999989--999799999983797---------------------84-----------799 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 988788865599998898720244677664300001022178--335300247863242677332002256899999999 Q gi|254780623|r 196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQS 273 (517) Q Consensus 196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~ 273 (517) -++.+|+.-+.++.. |. |-+.|..+.++ -.+||||++|-.+.+. ++....+- .-+.. T Consensus 47 -------~~~~~Ei~il~~l~h-----pn--Iv~~~~~~~~~~~~~ivmEy~~gg~l~~~--~~~~~l~e-----~~~~~ 105 (277) T cd06641 47 -------EDIQQEITVLSQCDS-----PY--VTKYYGSYLKDTKLWIIMEYLGGGSALDL--LEPGPLDE-----TQIAT 105 (277) T ss_pred -------HHHHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHCCCCCH-----HHHHH T ss_conf -------999999999986799-----88--99399999989999999979997969999--85499899-----99999 Q ss_pred HHHHH-------HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 99989-------7448661787862289802895357434031216989 Q gi|254780623|r 274 FLLHT-------LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 274 ~~~qi-------~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) ++.|+ -..|+.|-|.-|.||+++.+|.+-+.|||+.+.+++. T Consensus 106 ~~~qi~~aL~ylH~~~iiHRDlKp~NILl~~~~~vKl~DFGla~~~~~~ 154 (277) T cd06641 106 ILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDT 154 (277) T ss_pred HHHHHHHHHHHHHHCCCCCEECCHHHEEECCCCCEEEEECCCCEECCCC T ss_conf 9999999999999779810024535568879999999436784052788 No 96 >cd05573 STKc_ROCK_NDR_like STKc_ROCK_NDR_like: Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Probab=98.76 E-value=1.7e-08 Score=85.08 Aligned_cols=139 Identities=19% Similarity=0.308 Sum_probs=85.4 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.||.|+||+|+-+. +|+.||+|+.+..-. . + .+.... T Consensus 7 ~~lG~G~fg~V~~a~~~~--t~~~~AiK~i~k~~~----------------~----------~-----~~~~~~------ 47 (354) T cd05573 7 KVIGRGAFGEVWLVRKKD--TGKVYAMKILRKSDM----------------L----------K-----RNQVAH------ 47 (354) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHH----------------C----------C-----HHHHHH------ T ss_conf 686328683999999889--998999999827881----------------3----------8-----799999------ Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH----- Q ss_conf 599998898720244677664300001022178--3353002478632426773320022568999999999998----- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH----- 277 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q----- 277 (517) +.+|...+.... +|. |.+.|..+.++ -.|||||++|-.+.+. +...+. +.+..+..|+.| T Consensus 48 ~~~E~~il~~~~-----hp~--iv~l~~~f~~~~~~ylvmEy~~ggdL~~~--l~~~~~----l~e~~~~~~~~qi~~al 114 (354) T cd05573 48 VRAERDILADAD-----SPW--IVKLYYSFQDEEYLYLVMEYMPGGDLMTL--LIKYDV----FPEETARFYIAELVLAI 114 (354) T ss_pred HHHHHHHHHHCC-----CCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCC----CCHHHHHHHHHHHHHHH T ss_conf 999999998679-----999--89399999989999999968899888899--986699----99999999999999999 Q ss_pred --HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf --97448661787862289802895357434031216989 Q gi|254780623|r 278 --TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 278 --i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) +-..|+.|-|.-|.||+++.+|.+-+.|||+...+... T Consensus 115 ~~lH~~~iiHRDlKPeNILl~~~g~vKL~DFGlak~~~~~ 154 (354) T cd05573 115 DSVHKLGFIHRDIKPDNILIDADGHIKLADFGLCKKMKKA 154 (354) T ss_pred HHHHHCCEEECCCCCCEEEECCCCCEEEEECCCCEECCCC T ss_conf 9999789175135256589889998898025463014546 No 97 >cd06655 STKc_PAK2 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptoti Probab=98.76 E-value=2.5e-08 Score=83.74 Aligned_cols=151 Identities=17% Similarity=0.281 Sum_probs=95.0 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH Q ss_conf 04788999999867666778888655550212888723687640310468877778899987532114685433469179 Q gi|254780623|r 111 ALKAPIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSA 190 (517) Q Consensus 111 elg~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~ 190 (517) .+|.+-++ |.- -+.|+.|+-|+||+|+-+. +|+.||||+... ++ .+. T Consensus 13 s~gd~~~~-Y~~-~~~iG~G~fg~V~~a~~~~--t~~~vAiK~i~~--------------------~~-~~~-------- 59 (296) T cd06655 13 SIGDPKKK-YTR-YEKIGQGASGTVFTAIDVA--TGQEVAIKQINL--------------------QK-QPK-------- 59 (296) T ss_pred CCCCCCCC-EEE-EEEECCCCCEEEEEEEECC--CCCEEEEEEEEC--------------------CC-CCH-------- T ss_conf 99995503-396-2798038680999999889--998999999862--------------------00-853-------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHHHCCCHHH--- Q ss_conf 999999887888655999988987202446776643000010221--783353002478632426773320022568--- Q gi|254780623|r 191 VVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRACGHDLER--- 265 (517) Q Consensus 191 ~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~~~~d~~~--- 265 (517) .+ . +.+|+..+.++.. |. |-+.|.-+. ..-.+||||++|-.+.+.- ...+.+-.. T Consensus 60 --~~---~------~~~Ei~il~~l~H-----pn--Iv~l~~~~~~~~~~~ivmEy~~gg~L~~~i--~~~~l~e~~~~~ 119 (296) T cd06655 60 --KE---L------IINEILVMKELKN-----PN--IVNFLDSFLVGDELFVVMEYLAGGSLTDVV--TETCMDEAQIAA 119 (296) T ss_pred --HH---H------HHHHHHHHHHCCC-----CC--CCCEEEEEEECCEEEEEEECCCCCCHHHHH--HHCCCCHHHHHH T ss_conf --89---9------9999999996799-----89--991999999899999999658999289998--706999999999 Q ss_pred HHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 99999999999897448661787862289802895357434031216989 Q gi|254780623|r 266 LSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 266 la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) ++..++.+ +.-+-..|+.|-|.-|.||+++.+|.+-+.|||+...+++. T Consensus 120 i~~qil~a-L~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~ 168 (296) T cd06655 120 VCRECLQA-LEFLHANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPE 168 (296) T ss_pred HHHHHHHH-HHHHHHCCCCCCCCCHHHEEECCCCCEEEECCCCCEECCCC T ss_conf 99999999-99999888744779768778889999999818887777788 No 98 >cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu Probab=98.76 E-value=1.2e-08 Score=86.31 Aligned_cols=152 Identities=14% Similarity=0.192 Sum_probs=88.9 Q ss_pred HHHHHHHHHHHHHHHHEECCC-CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 766677888865555021288-8723687640310468877778899987532114685433469179999999887888 Q gi|254780623|r 124 DDPIAAASIAQVHPAVVHDIN-GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME 202 (517) Q Consensus 124 dePlasASiaQVh~A~l~d~~-~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E 202 (517) .+.|+.||-|+||+|+++.++ ++++||||+.+...... .+ . T Consensus 4 ~~~lG~G~fG~Vy~~~~~~~~~~~~~VAvK~~~~~~~~~---------------------------~~-----------~ 45 (273) T cd05035 4 GKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTY---------------------------SE-----------I 45 (273) T ss_pred EEEEECCCCEEEEEEEEECCCCEEEEEEEEEECCCCCCH---------------------------HH-----------H T ss_conf 018830768099999996899868899999977665888---------------------------99-----------9 Q ss_pred HHHHHHHHHHHHHHCCC-CCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHH-----CCCH---HHHHHHHHHH Q ss_conf 65599998898720244-6776643000010221783353002478632426773320-----0225---6899999999 Q gi|254780623|r 203 MDLRLEAAAFSEMAENT-VKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRAC-----GHDL---ERLSVTLVQS 273 (517) Q Consensus 203 lD~~~Ea~n~~~~~~~~-~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~-----~~d~---~~la~~l~~~ 273 (517) -+|.+|++.+.+++.-+ -..-++.+-.-..+....-.+||||++|-.+.+.-.-... ..+. -+++..++.+ T Consensus 46 ~~f~~E~~~l~~l~HpnIV~l~g~~~~~~~~~~~~~~~iv~ey~~~G~L~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~g 125 (273) T cd05035 46 EEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALG 125 (273) T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 99999999998679999950899998656456678628999857999589999750456787768999999999999999 Q ss_pred HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 99989744866178786228980289535743403121698 Q gi|254780623|r 274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) +.-+-..|+.|.|.-|.||+++.++++.+-|||+...+.+ T Consensus 126 -l~yLH~~~ivHrDlKp~NiLl~~~~~~kl~DFGls~~~~~ 165 (273) T cd05035 126 -MEYLSNRNFIHRDLAARNCMLREDMTVCVADFGLSKKIYS 165 (273) T ss_pred -HHHHHHCCCCCCCCCHHEEEECCCCCEEEECCCCCEECCC T ss_conf -9988209927676762028898999789941788616679 No 99 >cd05630 STKc_GRK6 STKc_GRK6: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translatio Probab=98.76 E-value=6.9e-08 Score=80.29 Aligned_cols=144 Identities=15% Similarity=0.207 Sum_probs=87.7 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.|+-|+||+|.-+. +|+.||+|+....- +... +.... T Consensus 6 k~lG~G~fG~V~~~~~~~--tg~~~AiK~i~~~~-----------------~~~~--------------~~~~~------ 46 (285) T cd05630 6 RVLGKGGFGEVCACQVRA--TGKMYACKKLEKKR-----------------IKKR--------------KGESM------ 46 (285) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHH-----------------CCCH--------------HHHHH------ T ss_conf 897027281999999989--99799999983788-----------------0235--------------78999------ Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHH-HHHHHHCCCHHH---HHHHHHHHHHHHH Q ss_conf 599998898720244677664300001022178--3353002478632426-773320022568---9999999999989 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDT-EKLRACGHDLER---LSVTLVQSFLLHT 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~-~~l~~~~~d~~~---la~~l~~~~~~qi 278 (517) ..+|.+.++++.. +. |.+.+..+.++ -.|||||++|-.+.+. ......+.+-.. ++..++.+ +.-+ T Consensus 47 ~~~E~~il~~l~h-----~~--iv~l~~~~~~~~~~~lv~e~~~ggdL~~~i~~~~~~~~~e~~~~~~~~qi~~a-l~yl 118 (285) T cd05630 47 ALNEKQILEKVNS-----RF--VVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCG-LEDL 118 (285) T ss_pred HHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHH-HHHH T ss_conf 9999999987699-----88--89498999869989999995369918999997188999999999999999999-9999 Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 7448661787862289802895357434031216989 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) -..|+.|-|.-|.||+++.+|.+-+.|||+...+++. T Consensus 119 H~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~ 155 (285) T cd05630 119 HQERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEG 155 (285) T ss_pred HHCCCCCCCCCCCCEEECCCCCEEEEECCCCEECCCC T ss_conf 8798653777733053569997899845622675899 No 100 >cd05072 PTKc_Lyn Catalytic Domain of the Protein Tyrosine Kinase, Lyn. Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa Probab=98.76 E-value=3.6e-08 Score=82.46 Aligned_cols=143 Identities=19% Similarity=0.258 Sum_probs=92.1 Q ss_pred HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 9867--66677888865555021288872368764031046887777889998753211468543346917999999988 Q gi|254780623|r 121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV 198 (517) Q Consensus 121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 198 (517) +.++ +.|++|+-|.||+|.+++ +.+||||+.+++-. + .+ T Consensus 6 ~~~~~~~~IG~G~fg~Vy~~~~~~---~~~VAvK~~~~~~~---------------------------~----~~----- 46 (261) T cd05072 6 ESIKMVKKLGAGQFGEVWMGFYNN---STKVAVKTLKPGTM---------------------------S----VQ----- 46 (261) T ss_pred HHEEEEEEEECCCCCEEEEEEECC---CCEEEEEEECCCCC---------------------------C----HH----- T ss_conf 997972398328886999999999---99999999866755---------------------------7----99----- Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHH-HCCCHH---HHHHHHHH Q ss_conf 7888655999988987202446776643000010221--78335300247863242677332-002256---89999999 Q gi|254780623|r 199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRA-CGHDLE---RLSVTLVQ 272 (517) Q Consensus 199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~-~~~d~~---~la~~l~~ 272 (517) +|.+|++.+..++. +. |-+.|.-+. ..-.|||||++|-.+.+.-.-.. ...+.. .++..++. T Consensus 47 -----~f~~E~~~l~~l~H-----pn--IV~~~g~~~~~~~~~lv~E~~~~GsL~~~l~~~~~~~~~~~~~~~~~~qia~ 114 (261) T cd05072 47 -----AFLEEANLMKTLQH-----DK--LVRLYAVVTKEEPIYIITEYMAKGSLLDFLKSDEGSKVQLPKLIDFSAQIAE 114 (261) T ss_pred -----HHHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH T ss_conf -----99999999986899-----88--8729999988998899998079993899985366888799999999999999 Q ss_pred HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 9999897448661787862289802895357434031216989 Q gi|254780623|r 273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) + +.-+-..|+.|.|.-|.||+++.++.+-+-|||+...++.. T Consensus 115 g-L~yLH~~~iiHrDlK~~NiLl~~~~~~Kl~DFGls~~~~~~ 156 (261) T cd05072 115 G-MAYIEKKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDN 156 (261) T ss_pred H-HHHHHHCCEECCCCCCCEEEECCCCCEEEEECCCCEECCCC T ss_conf 9-99998689266614637489889997999855875686799 No 101 >smart00219 TyrKc Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily. Probab=98.75 E-value=2.9e-08 Score=83.15 Aligned_cols=143 Identities=18% Similarity=0.253 Sum_probs=91.4 Q ss_pred HHHHHHHHHHHHHHHHHEEC--CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 67666778888655550212--8887236876403104688777788999875321146854334691799999998878 Q gi|254780623|r 123 FDDPIAAASIAQVHPAVVHD--INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTK 200 (517) Q Consensus 123 fdePlasASiaQVh~A~l~d--~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~ 200 (517) |++-|++||.|+||+|+++. ...++.||||+.++..... T Consensus 3 l~~~lG~G~fg~Vy~a~~~~~~~~~~~~VAvK~i~~~~~~~--------------------------------------- 43 (258) T smart00219 3 LGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQ--------------------------------------- 43 (258) T ss_pred ECCEEECCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCHH--------------------------------------- T ss_conf 46387228885999999958988557799999988557989--------------------------------------- Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHH-HHHHCCCH---HHHHHHHHHH- Q ss_conf 8865599998898720244677664300001022--178335300247863242677-33200225---6899999999- Q gi|254780623|r 201 MEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEK-LRACGHDL---ERLSVTLVQS- 273 (517) Q Consensus 201 ~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~-l~~~~~d~---~~la~~l~~~- 273 (517) ..-+|.+|++.+.+++. |.|. +.|.-+ ...-.|||||++|-.+.+.-. ........ ..++..++.+ T Consensus 44 ~~~~~~~E~~il~~l~H-----pnIv--~~~g~~~~~~~~~lvmE~~~~G~L~~~l~~~~~~~l~~~~~~~i~~qi~~gl 116 (258) T smart00219 44 QIEEFLREARIMRKLDH-----PNIV--KLLGVCTEEEPLMIVMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGM 116 (258) T ss_pred HHHHHHHHHHHHHHCCC-----CCEE--EEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHH T ss_conf 99999999999986799-----9885--3868997799889999668899199999755899999999999999999999 Q ss_pred -HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf -99989744866178786228980289535743403121698 Q gi|254780623|r 274 -FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 274 -~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) |++ ..|+.|.|.-|.||+++.++.+-+.|||+...++. T Consensus 117 ~yLH---~~~ivHrDiKp~NILl~~~~~~Kl~DFGla~~~~~ 155 (258) T smart00219 117 EYLE---SKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYD 155 (258) T ss_pred HHHH---HCCEECCCCCHHHEEECCCCCEEEEECCCCEECCC T ss_conf 9998---69985061758837888999599997788668889 No 102 >cd06609 STKc_MST3_like Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins req Probab=98.75 E-value=4e-08 Score=82.15 Aligned_cols=140 Identities=20% Similarity=0.236 Sum_probs=88.4 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.||-|.||+|+-+. +|+.||||+....- ... +. . . T Consensus 7 ~~iG~G~fg~Vy~a~~~~--t~~~vAvK~i~~~~---~~~-----------------------------~~-~------~ 45 (274) T cd06609 7 ECIGKGSFGEVYKAIDKR--TNQVVAIKVIDLEE---AED-----------------------------EI-E------D 45 (274) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHH---CHH-----------------------------HH-H------H T ss_conf 798217684999999989--99899999981676---948-----------------------------99-9------9 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHH---HHHHHHHHHHHHH Q ss_conf 599998898720244677664300001022178--33530024786324267733200225689---9999999999897 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERL---SVTLVQSFLLHTL 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~l---a~~l~~~~~~qi~ 279 (517) +.+|.+.+.++.. |. |-+.|.-+.++ -.+||||++|-.+.+.- +....+-..+ +..++.+ +.-+- T Consensus 46 ~~~Ei~~l~~l~h-----pn--Iv~~~~~~~~~~~~~ivmEy~~gg~L~~~l--~~~~~~e~~~~~~~~qi~~a-L~ylH 115 (274) T cd06609 46 IQQEIQFLSQCRS-----PY--ITKYYGSFLKGSKLWIIMEYCGGGSCLDLL--KPGKLDETYIAFILREVLLG-LEYLH 115 (274) T ss_pred HHHHHHHHHHCCC-----CC--CCCEEEEEEECCEEEEEEECCCCCCHHHHH--HCCCCCHHHHHHHHHHHHHH-HHHHH T ss_conf 9999999986799-----89--990999999899999999788979799999--70899999999999999999-99998 Q ss_pred HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 448661787862289802895357434031216989 Q gi|254780623|r 280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) ..|+.|-|.-|.||+++.+|.+-+.|||....++.. T Consensus 116 ~~~iiHRDlKp~NILl~~~g~vKl~DFG~a~~~~~~ 151 (274) T cd06609 116 EEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTST 151 (274) T ss_pred HCCEEEEECCHHHEEECCCCCEEEEECCCCEECCCC T ss_conf 699788774668836778999899457886471688 No 103 >cd06645 STKc_MAP4K3 Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MA Probab=98.74 E-value=2.7e-08 Score=83.45 Aligned_cols=143 Identities=17% Similarity=0.271 Sum_probs=90.4 Q ss_pred HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 9867--66677888865555021288872368764031046887777889998753211468543346917999999988 Q gi|254780623|r 121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV 198 (517) Q Consensus 121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 198 (517) +.++ +.|++||.|+||+|+-+. +|+.||||+.+-. +. +++. T Consensus 9 ~~y~~~~~iG~G~fg~Vy~~~~~~--t~~~~AvK~i~~~-----------------------~~----------~~~~-- 51 (267) T cd06645 9 EDFELIQRIGSGTYGDVYKARNVN--TGELAAIKVIKLE-----------------------PG----------EDFA-- 51 (267) T ss_pred HHEEEEEEEECCCCEEEEEEEECC--CCCEEEEEEEECC-----------------------CH----------HHHH-- T ss_conf 940972498328685999999889--9979999999477-----------------------42----------0299-- Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHHHC-CC---HHHHHHHHHH Q ss_conf 7888655999988987202446776643000010221--7833530024786324267733200-22---5689999999 Q gi|254780623|r 199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRACG-HD---LERLSVTLVQ 272 (517) Q Consensus 199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~~~-~d---~~~la~~l~~ 272 (517) .+.+|+..+.+++. |.| -+.|.-+. ..-.+||||++|-.+.+.-. ..+ .+ ...++..++. T Consensus 52 -----~~~~Ei~~l~~l~H-----pnI--v~~~~~~~~~~~~~ivmEy~~~g~L~~~~~--~~~~~~e~~~~~~~~qi~~ 117 (267) T cd06645 52 -----VVQQEIIMMKDCKH-----SNI--VAYFGSYLRRDKLWICMEFCGGGSLQDIYH--VTGPLSESQIAYVSRETLQ 117 (267) T ss_pred -----HHHHHHHHHHHCCC-----CCE--EEEEEEEEECCEEEEEEECCCCCCHHHHHH--HCCCCCHHHHHHHHHHHHH T ss_conf -----99999999986899-----988--289999998998999997369991999998--7299999999999999999 Q ss_pred HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 9999897448661787862289802895357434031216989 Q gi|254780623|r 273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) + +.-+-..|+.|-|.-|.||+++.+|++.+.|||+...++.. T Consensus 118 a-l~yLH~~~iiHRDlKp~NILl~~~g~vKl~DFGls~~~~~~ 159 (267) T cd06645 118 G-LYYLHSKGKMHRDIKGANILLTDNGHVKLADFGVSAQITAT 159 (267) T ss_pred H-HHHHHHCCCEEEECCHHHEEECCCCCEEEECCCCCEECCCC T ss_conf 9-99999779356005533279879998999138675464787 No 104 >cd05571 STKc_PKB STKc_PKB: Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Probab=98.74 E-value=1.2e-07 Score=78.46 Aligned_cols=136 Identities=16% Similarity=0.157 Sum_probs=81.1 Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67788886555502128887236876403104688777788999875321146854334691799999998878886559 Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR 206 (517) Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~ 206 (517) |+.||-|+||+|+-+. +|+.||+||.+.... +.. + +. ..+ . T Consensus 3 LG~G~fG~V~l~~~k~--t~~~~AiKvi~k~~~--~~~-------------------------~---~~-~~~------~ 43 (323) T cd05571 3 LGKGTFGKVILVREKA--TGKYYAMKILKKEVI--IAK-------------------------D---EV-AHT------L 43 (323) T ss_pred EEECCCEEEEEEEECC--CCCEEEEEEECHHHC--CCH-------------------------H---HH-HHH------H T ss_conf 3207293999999889--998999999836886--497-------------------------9---99-999------9 Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCC-CH---HHHHHHHHHHHHHHHHH Q ss_conf 9998898720244677664300001022178--335300247863242677332002-25---68999999999998974 Q gi|254780623|r 207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGH-DL---ERLSVTLVQSFLLHTLR 280 (517) Q Consensus 207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~-d~---~~la~~l~~~~~~qi~~ 280 (517) +|.+-+.+.+ +|. |-+.|..+.++ -.+||||++|-.+.+. +...+. +- +.++..++.+ +.-+-. T Consensus 44 ~E~~il~~l~-----Hp~--Iv~l~~~f~~~~~lylVmEy~~gGdL~~~--l~~~~~l~e~~~~~~~~qi~~a-L~yLH~ 113 (323) T cd05571 44 TESRVLQNTR-----HPF--LTALKYSFQTHDRLCFVMEYANGGELFFH--LSRERVFSEDRARFYGAEIVSA-LGYLHS 113 (323) T ss_pred HHHHHHHHCC-----CCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHHH T ss_conf 9999998679-----998--89599999989999999973599869999--9874999999999999999999-999997 Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 4866178786228980289535743403121 Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) .|+.|-|.-|.||+++.+|.+-+.|||++.. T Consensus 114 ~~IiHRDLKPeNILl~~~g~iKL~DFGlak~ 144 (323) T cd05571 114 CDVVYRDLKLENLMLDKDGHIKITDFGLCKE 144 (323) T ss_pred CCCEEEEECCCCCCCCCCCCEEEEECCEEEE T ss_conf 8926754044445424689788621215452 No 105 >cd05633 STKc_GRK3 STKc_GRK3: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory recept Probab=98.74 E-value=3.2e-08 Score=82.87 Aligned_cols=143 Identities=16% Similarity=0.168 Sum_probs=82.0 Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67788886555502128887236876403104688777788999875321146854334691799999998878886559 Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR 206 (517) Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~ 206 (517) |+.|+-|.||+|+-++ +|+.||||+....- +.. .+...... T Consensus 2 iG~G~fG~V~~~~~~~--tg~~~AiK~i~k~~---~~~----------------------------~~~~~~~~------ 42 (279) T cd05633 2 IGRGGFGEVYGCRKAD--TGKMYAMKCLDKKR---IKM----------------------------KQGETLAL------ 42 (279) T ss_pred CCCCCCEEEEEEEECC--CCCEEEEEEECHHH---HHH----------------------------HHHHHHHH------ T ss_conf 8208370999999889--99899999984788---014----------------------------67789999------ Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCC-CH---HHHHHHHHHHHHHHHHH Q ss_conf 9998898720244677664300001022178--335300247863242677332002-25---68999999999998974 Q gi|254780623|r 207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGH-DL---ERLSVTLVQSFLLHTLR 280 (517) Q Consensus 207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~-d~---~~la~~l~~~~~~qi~~ 280 (517) .|...+..... .+.|.|. ..+..+.++ -.+||||++|-.+.+. +...+. +. ..++..++.+ +.-+-. T Consensus 43 ~e~~~~~~~~~--~~~p~iv--~~~~~~~~~~~~~lvmE~~~gg~L~~~--l~~~~~l~e~~~~~~~~qil~a-L~ylH~ 115 (279) T cd05633 43 NERIMLSLVST--GDCPFIV--CMTYAFHTPDKLCFILDLMNGGDLHYH--LSQHGVFSEKEMRFYATEIILG-LEHMHN 115 (279) T ss_pred HHHHHHHHHHC--CCCCCEE--EEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHHH T ss_conf 99999999852--7999787--899999989999999984599869999--9875999999999999999999-999987 Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 48661787862289802895357434031216989 Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) .|+.|-|.-|.||+++.+|.+-+.|||+...++.. T Consensus 116 ~~IiHRDlKP~NILl~~~g~~Kl~DFGla~~~~~~ 150 (279) T cd05633 116 RFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK 150 (279) T ss_pred CCCEECCCCCCCCCCCCCCCEEECCCCEEEECCCC T ss_conf 89874104733324036897696501055662688 No 106 >cd05042 PTKc_Aatyk Catalytic Domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina Probab=98.74 E-value=5.8e-08 Score=80.85 Aligned_cols=140 Identities=14% Similarity=0.141 Sum_probs=86.7 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) |.|++|+-|+||+|+.+++++..+||||..+..... .++.+ T Consensus 1 e~iG~G~fG~Vy~g~~~~~~~~~~vavK~l~~~~~~---------------------------------------~~~~~ 41 (269) T cd05042 1 DEIGNGWFGKVLLGEAHRGMSKARVVVKELRASATP---------------------------------------DEQLL 41 (269) T ss_pred CCCCCCCCCEEEEEEECCCCEEEEEEEEEECCCCCH---------------------------------------HHHHH T ss_conf 988678683899999807985289999997876897---------------------------------------99999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHH----CCCH---HHHHHHHHH--HHH Q ss_conf 5999988987202446776643000010221783353002478632426773320----0225---689999999--999 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRAC----GHDL---ERLSVTLVQ--SFL 275 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~----~~d~---~~la~~l~~--~~~ 275 (517) |.+|++.+.+++.-+ -|.+=.+.. -..+-.|||||++|-.+.+.-.-... ..+. ..++..++. .|+ T Consensus 42 f~~Ei~~l~~l~HpN----Iv~~~g~~~-~~~~~~lv~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~ia~~ia~gl~yL 116 (269) T cd05042 42 FLQEVQPYRELNHPN----VLQCLGQCI-ESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWL 116 (269) T ss_pred HHHHHHHHHHCCCCC----CCEEEEEEE-ECCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 999999998689989----860999998-899899999906998299998855555444556999999999999999999 Q ss_pred HHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 989744866178786228980289535743403121 Q gi|254780623|r 276 LHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 276 ~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) + ..|+.|.|..|.||+++.++.+.+-|||+... T Consensus 117 H---~~~ivHrDlK~~NiLl~~~~~~Ki~DFGla~~ 149 (269) T cd05042 117 H---QADFIHSDLALRNCQLTADLSVKIGDYGLALE 149 (269) T ss_pred H---HCCEEECCCCCCEEEECCCCCEEEEECCCCCC T ss_conf 7---58954267654017888999299986757730 No 107 >cd05092 PTKc_TrkA Catalytic Domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A. Protein Tyrosine Kinase (PTK) family; Tropomyosin related kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory Probab=98.73 E-value=6.9e-08 Score=80.31 Aligned_cols=144 Identities=15% Similarity=0.150 Sum_probs=89.5 Q ss_pred HHHHHHHHHHHHHHHHEEC---CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 7666778888655550212---8887236876403104688777788999875321146854334691799999998878 Q gi|254780623|r 124 DDPIAAASIAQVHPAVVHD---INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTK 200 (517) Q Consensus 124 dePlasASiaQVh~A~l~d---~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~ 200 (517) .+-|++||-|+||+|+.+. ..++..||||+.++.-.+ T Consensus 10 ~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~---------------------------------------- 49 (280) T cd05092 10 KWELGEGAFGKVFLAECANLLPEQDKMLVAVKALKEANES---------------------------------------- 49 (280) T ss_pred EEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHH---------------------------------------- T ss_conf 6795457686899999867755876779999997856868---------------------------------------- Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHH--------H------HCCC-- Q ss_conf 8865599998898720244677664300001022178--33530024786324267733--------2------0022-- Q gi|254780623|r 201 MEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLR--------A------CGHD-- 262 (517) Q Consensus 201 ~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~--------~------~~~d-- 262 (517) ..-+|.+|++-+.+++. |. |-+.|.-.+.. -.|||||++|-.+.+.-... . ...+ T Consensus 50 ~~~~~~~E~~~l~~l~H-----pn--Iv~~~g~~~~~~~~~lvmEy~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 122 (280) T cd05092 50 ARQDFQREAELLTVLQH-----QH--IVRFYGVCTEGEPLAMVFEYMRHGDLNRFLRSHGPDAKILDEGKDVAPGQLTLP 122 (280) T ss_pred HHHHHHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEEECCCCCHHHHHHHHCCCCCCCHHCCCCCCCCCCHH T ss_conf 99999999999986789-----98--670888992399899999806999089999870874100000024666777999 Q ss_pred -HHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf -56899999999999897448661787862289802895357434031216989 Q gi|254780623|r 263 -LERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 263 -~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) .-.++..++.+.. -+-..|+.|.|.-|.||+++.++.+-+-|||+...+... T Consensus 123 ~~~~i~~qia~gl~-yLHs~~iiHRDlKp~NiLl~~~~~~Kl~DFGls~~~~~~ 175 (280) T cd05092 123 QMLHIAAQIASGMV-YLASLHFVHRDLATRNCLVGEGLVVKIGDFGMSRDIYST 175 (280) T ss_pred HHHHHHHHHHHHHH-HHHHCCCCCCCCCCCEEEECCCCCEEECCCEECCCCCCC T ss_conf 99999999999999-984099736866714289879994897526303315777 No 108 >cd05609 STKc_MAST STKc_MAST: Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAS Probab=98.73 E-value=7.8e-08 Score=79.88 Aligned_cols=137 Identities=20% Similarity=0.232 Sum_probs=83.0 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.||.|+||+|+-+. +|+.||||+.... + .. ..+-. ..+. T Consensus 7 ~~lG~G~fg~V~~a~~~~--t~~~~AiK~i~k~-------~---------~~-----------~~~~~----~~~~---- 49 (305) T cd05609 7 KLISNGAYGAVYLVRHKE--TRQRFAMKKINKQ-------N---------LI-----------LRNQI----QQVF---- 49 (305) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEEHH-------H---------CC-----------CHHHH----HHHH---- T ss_conf 786318892999999989--9989999998067-------7---------03-----------44699----9999---- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHH----HHHHHHHHHHHHH Q ss_conf 5999988987202446776643000010221783--353002478632426773320022568----9999999999989 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLER----LSVTLVQSFLLHT 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~----la~~l~~~~~~qi 278 (517) .|.+-+... ++| .|.+.|..+-+++ .+||||++|-.+.+.- ...+.-... ++..++.+ +.-+ T Consensus 50 --~E~~il~~~-----~hp--~Iv~l~~~~~~~~~~ylvmEy~~gg~L~~~i--~~~~~l~~~~~~~~~~qi~~a-L~yl 117 (305) T cd05609 50 --VERDILTFA-----ENP--FVVSMFCSFETRRHLCMVMEYVEGGDCATLL--KNIGPLPVDMARMYFAETVLA-LEYL 117 (305) T ss_pred --HHHHHHHHC-----CCC--CEEEEEEEEEECCEEEEEEECCCCCCHHHHH--HHCCCCCHHHHHHHHHHHHHH-HHHH T ss_conf --999999857-----899--7811136998699899999658998989999--864999999999999999999-9999 Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHE Q ss_conf 74486617878622898028953574340312 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITG 310 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg 310 (517) -..|+.|-|.-|.||+++.+|.+-+.|||+.. T Consensus 118 H~~~IiHRDlKPeNILl~~~g~iKl~DFGlak 149 (305) T cd05609 118 HNYGIVHRDLKPDNLLITSMGHIKLTDFGLSK 149 (305) T ss_pred HHCCCCCCCCCCCEEEECCCCCEEEEECCCCC T ss_conf 97896115576122798899988998778773 No 109 >cd07836 STKc_Pho85 The catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85 subfamily. Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the Probab=98.73 E-value=2.7e-08 Score=83.45 Aligned_cols=136 Identities=18% Similarity=0.297 Sum_probs=79.4 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-|+.|+-|.||+|.-+. +|+.||||+.+-.-.+. .+ ... T Consensus 6 ~~iG~G~fg~V~~~~~~~--~~~~vAiK~i~~~~~~~------------------~~---------------~~~----- 45 (284) T cd07836 6 EKLGEGTYATVYKGRNRT--TGEIVALKEIHLDAEEG------------------TP---------------STA----- 45 (284) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHCCCC------------------CH---------------HHH----- T ss_conf 596128583999999889--99899999986200233------------------18---------------999----- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH---- Q ss_conf 5999988987202446776643000010221--7833530024786324267733200225689999999999989---- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT---- 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi---- 278 (517) .+|.+.+..++. |. |-+.|.-+- +.-++||||++| .+.+.- ...+ .+..+-...+..+++|+ T Consensus 46 -~~Ei~il~~l~h-----pn--Iv~l~~~~~~~~~~~iv~E~~~~-~L~~~l--~~~~-~~~~l~~~~i~~~~~Qil~aL 113 (284) T cd07836 46 -IREISLMKELKH-----EN--IVRLHDVIHTESKLMLVFEYMEK-DLKKYM--DTHG-NRGALDPNTVKSFTYQLLKGI 113 (284) T ss_pred -HHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCC-CHHHHH--HHHC-CCCCCCHHHHHHHHHHHHHHH T ss_conf -999999997799-----89--89297899569989999985899-889999--9726-578999999999999999999 Q ss_pred ---HHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC Q ss_conf ---7448661787862289802895357434031216 Q gi|254780623|r 279 ---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL 312 (517) Q Consensus 279 ---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l 312 (517) -..|+.|.|.-|.||+++.+|++-+.|||+...+ T Consensus 114 ~ylH~~gIiHRDlKP~NILl~~~~~vKL~DFG~a~~~ 150 (284) T cd07836 114 AFCHENRVLHRDLKPQNLLINKRGELKLADFGLARAF 150 (284) T ss_pred HHHHHCCEEEEECCCCEEEECCCCCEEEEECCCHHHC T ss_conf 9999789154215611069989998899763731324 No 110 >cd06613 STKc_MAP4K3_like Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-bindin Probab=98.73 E-value=1.7e-08 Score=85.02 Aligned_cols=140 Identities=19% Similarity=0.242 Sum_probs=89.6 Q ss_pred HHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 76667788886555502128887236876403104688777788999875321146854334691799999998878886 Q gi|254780623|r 124 DDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM 203 (517) Q Consensus 124 dePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El 203 (517) .+.||.|+-|+||+|+-+. +|+.||||+.+-. . .+ ++ - T Consensus 8 ~~~iG~G~fg~V~~~~~~~--~g~~~AiK~~~~~-----------------------~-------~~---~~-------~ 45 (261) T cd06613 8 LQRIGSGTYGDVYKARDIA--TGELAAVKVIKLE-----------------------P-------GD---DF-------E 45 (261) T ss_pred EEEEECCCCEEEEEEEECC--CCCEEEEEEEECC-----------------------C-------HH---HH-------H T ss_conf 1098417583999999889--9989999998058-----------------------6-------65---79-------9 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHC-CCH---HHHHHHHHHHHHHH Q ss_conf 55999988987202446776643000010221783--3530024786324267733200-225---68999999999998 Q gi|254780623|r 204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACG-HDL---ERLSVTLVQSFLLH 277 (517) Q Consensus 204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~-~d~---~~la~~l~~~~~~q 277 (517) ++.+|++.+.++.. | .|.+.|..+.+++ .+||||++|-.+.+.- +..+ .+- ..++..++.+ +.- T Consensus 46 ~~~~Ei~il~~l~H-----p--nIv~~~~~~~~~~~~~ivmEy~~~g~L~~~~--~~~~~~~e~~i~~~~~qil~a-L~y 115 (261) T cd06613 46 IIQQEISMLKECRH-----P--NIVAYFGSYLRRDKLWIVMEYCGGGSLQDIY--QVTGPLSELQIAYVCRETLKG-LAY 115 (261) T ss_pred HHHHHHHHHHHCCC-----C--CCCEEEEEEEECCEEEEEEECCCCCCHHHHH--HHCCCCCHHHHHHHHHHHHHH-HHH T ss_conf 99999999986799-----8--9992999999899999999797989099999--734999999999999999999-999 Q ss_pred HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 97448661787862289802895357434031216989 Q gi|254780623|r 278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) +-..|+.|-|.-|.||+++.+|.+-+.|||....++.. T Consensus 116 lH~~~iiHRDiKp~NILl~~~~~vKi~DFGla~~~~~~ 153 (261) T cd06613 116 LHSQGKIHRDIKGANILLTEDGDVKLADFGVSAQLTAT 153 (261) T ss_pred HHHCCCEECCCCHHHEEECCCCCEEEECCCCCEECCCC T ss_conf 99889053456779879889999999258266575687 No 111 >cd05051 PTKc_DDR Catalytic Domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors. Protein Tyrosine Kinase (PTK) family; Discoidin domain receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke Probab=98.73 E-value=2e-07 Score=76.65 Aligned_cols=142 Identities=17% Similarity=0.219 Sum_probs=88.7 Q ss_pred HHHHHHHHHHHHHHHHEEC--------------CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH Q ss_conf 7666778888655550212--------------88872368764031046887777889998753211468543346917 Q gi|254780623|r 124 DDPIAAASIAQVHPAVVHD--------------INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFS 189 (517) Q Consensus 124 dePlasASiaQVh~A~l~d--------------~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~ 189 (517) -+.|+.|+.|.||+|..+. .+.++.||||+.+++..+. T Consensus 10 ~~~iG~G~FG~Vy~a~~~~~~~~~~~~~~~~~~~~~~~~VAvK~l~~~~~~~---------------------------- 61 (296) T cd05051 10 VEKLGEGQFGEVHLCEAEGLQDFSEKAFAENDSADAPRLVAVKKLRPDASDN---------------------------- 61 (296) T ss_pred EEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHH---------------------------- T ss_conf 0698228881999707748764321111124557776589999978768978---------------------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC---CCCEEEEECCCCCCCCHHHHHHH-------- Q ss_conf 9999999887888655999988987202446776643000010221---78335300247863242677332-------- Q gi|254780623|r 190 AVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT---ERDVITMEWIDGVKISDTEKLRA-------- 258 (517) Q Consensus 190 ~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s---t~~VLvmE~i~G~~i~d~~~l~~-------- 258 (517) ..-+|.+|++.+.+++. |.| =+.|. .| ..-.|||||++|-.+.+.-.-.. T Consensus 62 -----------~~~~f~~Ei~il~~l~H-----pnI--v~~~g-~~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~ 122 (296) T cd05051 62 -----------AREDFLKEVKILSRLSD-----PNI--ARLLG-VCTQDPPLCMIMEYMENGDLNQFLQKHVAETSGLAC 122 (296) T ss_pred -----------HHHHHHHHHHHHHHCCC-----CCC--CCEEE-EEEECCEEEEEEEECCCCCHHHHHHHCCCCCCCCCC T ss_conf -----------99999999999986899-----488--87989-998899889999906899789999863565432001 Q ss_pred --HCCCH---HHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf --00225---68999999999998974486617878622898028953574340312169 Q gi|254780623|r 259 --CGHDL---ERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 259 --~~~d~---~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) ..... -.++..++... .-+-..++.|.|.-|.||+++.++.+-+-|||+...+. T Consensus 123 ~~~~l~~~~~~~i~~qia~gl-~yLh~~~iiHrDlK~~NiLl~~~~~~Ki~DFGlsr~~~ 181 (296) T cd05051 123 NSKTLSFSTLLYMATQIASGM-KYLESLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLY 181 (296) T ss_pred CCCCCCHHHHHHHHHHHHHHH-HHHHHCCEECCCCCCCEEEECCCCCEEEEECCCCCCCC T ss_conf 357789999999999999999-99977993447567265998899989998656773457 No 112 >cd07867 STKc_CDC2L6 The catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinase, Cell Division Cycle 2-like 6. Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, ca Probab=98.73 E-value=3.5e-08 Score=82.56 Aligned_cols=142 Identities=19% Similarity=0.278 Sum_probs=83.9 Q ss_pred HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 66778888655550212888723687640310468877778899987532114685433469179999999887888655 Q gi|254780623|r 126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL 205 (517) Q Consensus 126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~ 205 (517) =|+.||-|+||+|..+|+..++.||||+.+..- .. ... T Consensus 8 kiG~G~fg~V~~~~~~d~~~~~~vAiK~i~~~~---------------------------~~---------~~~------ 45 (317) T cd07867 8 KVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG---------------------------IS---------MSA------ 45 (317) T ss_pred EEEECCCEEEEEEEECCCCCCEEEEEEEECCCC---------------------------CC---------HHH------ T ss_conf 951161809999997139737799999989877---------------------------72---------899------ Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC-EEEEECCCCCCCCHHHHHHH---HCCCHHHHHHHHHHHHHHHHH-- Q ss_conf 999988987202446776643000010221783-35300247863242677332---002256899999999999897-- Q gi|254780623|r 206 RLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD-VITMEWIDGVKISDTEKLRA---CGHDLERLSVTLVQSFLLHTL-- 279 (517) Q Consensus 206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~-VLvmE~i~G~~i~d~~~l~~---~~~d~~~la~~l~~~~~~qi~-- 279 (517) .+|...+++++. ..-|..=.+|.+.++.. .|||||++|. +.++-.... ....+..+.+..+..++.|++ T Consensus 46 ~rEi~iL~~l~h----pniv~l~~~~~~~~~~~~~lv~e~~~~~-l~~~i~~~~~~~~~~~~~~l~~~~i~~i~~qll~a 120 (317) T cd07867 46 CREIALLRELKH----PNVIALQKVFLSHSDRKVWLLFDYAEHD-LWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDG 120 (317) T ss_pred HHHHHHHHHCCC----CCCCCEEEEEECCCCCEEEEEEECCCCC-HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH T ss_conf 999999987789----8998288999627997899999727997-89998862210102576678999999999999999 Q ss_pred -----HCCEECCCCCCCEEEEE----CCCCEEEEECCHHEECCH Q ss_conf -----44866178786228980----289535743403121698 Q gi|254780623|r 280 -----RDGFFHADLHPGNLFVD----SKGYIVAVDMGITGRLSK 314 (517) Q Consensus 280 -----~~GfFHaDPHpGNi~v~----~dg~i~~lDfG~vg~l~~ 314 (517) ..|+.|.|..|.||++. .+|++-+.|||....++. T Consensus 121 l~ylH~~~IiHRDiKP~NILi~~~~~~~~~vKi~DFG~a~~~~~ 164 (317) T cd07867 121 IHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNS 164 (317) T ss_pred HHHHHHCCEECCCCCCCCEEEECCCCCCCCEEECCCCCCEECCC T ss_conf 99998789552678700079823687668467646660034388 No 113 >cd05080 PTKc_Tyk2_rpt2 Catalytic (Repeat 2) Domain of the Protein Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign Probab=98.73 E-value=7.6e-08 Score=79.95 Aligned_cols=140 Identities=14% Similarity=0.199 Sum_probs=89.7 Q ss_pred HHHHHHHHHHHHHHHEE--CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 66677888865555021--2888723687640310468877778899987532114685433469179999999887888 Q gi|254780623|r 125 DPIAAASIAQVHPAVVH--DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME 202 (517) Q Consensus 125 ePlasASiaQVh~A~l~--d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E 202 (517) +.|++|+-|+||+++.+ +.++|+.||||+.+++..+. .. T Consensus 10 k~iG~G~FG~V~~~~~~~~~~~~g~~vAvK~l~~~~~~~---------------------------------------~~ 50 (283) T cd05080 10 RVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQ---------------------------------------NT 50 (283) T ss_pred EEECCCCCEEEEEEEEEEEECCCCEEEEEEEECCCCCHH---------------------------------------HH T ss_conf 795257784999806841378889299999988445977---------------------------------------89 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC---C--EEEEECCCCCCCCHHHHHHHHCCCHH---HHHHHHHHHH Q ss_conf 65599998898720244677664300001022178---3--35300247863242677332002256---8999999999 Q gi|254780623|r 203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER---D--VITMEWIDGVKISDTEKLRACGHDLE---RLSVTLVQSF 274 (517) Q Consensus 203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~---~--VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~l~~~~ 274 (517) -+|.+|+..+..++. |.| -+.| .+|+. + .|||||++|-++.+. ++....+.. .++..++.. T Consensus 51 ~~~~~E~~il~~l~H-----pnI--v~~~-g~~~~~~~~~~~lv~Ey~~~GsL~~~--l~~~~l~~~~~~~~~~qia~g- 119 (283) T cd05080 51 SGWKKEINILKTLYH-----ENI--VKYK-GCCSEQGGKGLQLIMEYVPLGSLRDY--LPKHKLNLAQLLLFAQQICEG- 119 (283) T ss_pred HHHHHHHHHHHHCCC-----CCE--EEEE-EEEECCCCCEEEEEEECCCCCCHHHH--HHCCCCCHHHHHHHHHHHHHH- T ss_conf 999999999986799-----877--0089-89832899689999976799998886--301799999999999999999- Q ss_pred HHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 9989744866178786228980289535743403121698 Q gi|254780623|r 275 LLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 275 ~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) +.-+-..|+.|.|.-|.||+++.++.+-+-|||+...++. T Consensus 120 l~yLH~~~iiHRDlK~~NiLl~~~~~~Ki~DFGlsr~~~~ 159 (283) T cd05080 120 MAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPE 159 (283) T ss_pred HHHHHCCCCCCCCCCCCEEEECCCCCEEEEECEEEEECCC T ss_conf 9998309915375674107887899789842220144478 No 114 >cd05608 STKc_GRK1 STKc_GRK1: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod Probab=98.73 E-value=4.4e-08 Score=81.84 Aligned_cols=141 Identities=14% Similarity=0.227 Sum_probs=83.6 Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67788886555502128887236876403104688777788999875321146854334691799999998878886559 Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR 206 (517) Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~ 206 (517) |+.||-|.||+|+-+. +|+.||||+....- + .. . ... ... . T Consensus 1 LG~G~fg~V~~~~~~~--tg~~~AiK~i~k~~---~--------------~~------~----~~~----~~~------~ 41 (280) T cd05608 1 LGKGGFGEVSACQMRA--TGKMYACKKLNKKR---L--------------KK------R----KGY----EGA------M 41 (280) T ss_pred CCCCCCEEEEEEEECC--CCCEEEEEEEEHHH---C--------------CC------H----HHH----HHH------H T ss_conf 9778574999999999--99799999980788---2--------------25------6----899----999------9 Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHH-HHHH--HCCCHH---HHHHHHHHHHHHHH Q ss_conf 9998898720244677664300001022178--33530024786324267-7332--002256---89999999999989 Q gi|254780623|r 207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTE-KLRA--CGHDLE---RLSVTLVQSFLLHT 278 (517) Q Consensus 207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~-~l~~--~~~d~~---~la~~l~~~~~~qi 278 (517) +|.+.+.++.. +. |.+.|..+.++ -.|||||++|-.+.+.- .... .+.+-. .++..++.+ +.-+ T Consensus 42 ~E~~il~~l~h-----~~--iv~l~~~~~~~~~~~lvmE~~~gG~L~~~i~~~~~~~~~~~e~~~~~~~~qi~~a-L~yl 113 (280) T cd05608 42 VEKRILARVHS-----RF--IVSLAYAFQTKTDLCLVMTLMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIILG-LEHL 113 (280) T ss_pred HHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHH T ss_conf 99999986699-----87--8859999987997899997268991899998755417998999999999999999-9999 Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 744866178786228980289535743403121698 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) -..|+.|-|.-|.||+++.+|.+-+.|||....+.+ T Consensus 114 H~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~ 149 (280) T cd05608 114 HQHRIVYRDLKPENVLLDNDGNVRISDLGLAVELKD 149 (280) T ss_pred HHCCCEEEECCCCCEEECCCCCEEEECCCCCEEECC T ss_conf 878926801473212146999889840464268327 No 115 >cd05611 STKc_Rim15_like STKc_Rim15_like: Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stati Probab=98.72 E-value=2.3e-08 Score=84.00 Aligned_cols=135 Identities=19% Similarity=0.360 Sum_probs=82.8 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) ++|+.||-|+||+|+-+. +|+.||||+.+.. + . ... .+..+ T Consensus 2 ~~iG~G~fg~V~~a~~~~--t~~~~AiK~i~~~-------~---------~----------~~~-----------~~~~~ 42 (260) T cd05611 2 KPISKGAFGSVYLAKKRS--TGDYFAIKVLKKS-------D---------M----------IAK-----------NQVTN 42 (260) T ss_pred CCCCCCCCCEEEEEEECC--CCCEEEEEEEEHH-------H---------C----------CCH-----------HHHHH T ss_conf 643558481999999889--9989999998257-------7---------5----------466-----------79999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH---- Q ss_conf 599998898720244677664300001022178--33530024786324267733200225689999999999989---- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT---- 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi---- 278 (517) +..|..++.... +.|. |-+.|.-+-++ -.+||||++|-.+.+.- +..+ .+.+..+..++.|+ T Consensus 43 ~~~e~~~~~~~~----~hpn--Iv~~~~~~~~~~~~~lvmEy~~gg~L~~~i--~~~~----~l~e~~~~~~~~qil~al 110 (260) T cd05611 43 VKAERAIMMIQG----ESPY--VAKLYYSFQSKDYLYLVMEYLNGGDCASLI--KTLG----GLPEDWAKQYIAEVVLGV 110 (260) T ss_pred HHHHHHHHHHHC----CCCC--EEEEEEEEEECCEEEEEEECCCCCCHHHHH--HHCC----CCCHHHHHHHHHHHHHHH T ss_conf 999999999737----9995--756999999899999998388998799999--8749----999999999999999999 Q ss_pred ---HHCCEECCCCCCCEEEEECCCCEEEEECCHHE Q ss_conf ---74486617878622898028953574340312 Q gi|254780623|r 279 ---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITG 310 (517) Q Consensus 279 ---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg 310 (517) -..|+.|-|.-|.||+++.+|.+-+.|||+.. T Consensus 111 ~ylH~~~IiHRDiKpeNILl~~~~~~Kl~DFGls~ 145 (260) T cd05611 111 EDLHQRGIIHRDIKPENLLIDQTGHLKLTDFGLSR 145 (260) T ss_pred HHHHHCCEECCCCCHHHEEECCCCCEEEEECCCCC T ss_conf 99998890506666534668799989995178785 No 116 >PTZ00263 protein kinase A catalytic subunit; Provisional Probab=98.72 E-value=9.4e-08 Score=79.27 Aligned_cols=145 Identities=18% Similarity=0.265 Sum_probs=91.4 Q ss_pred HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 9867--66677888865555021288872368764031046887777889998753211468543346917999999988 Q gi|254780623|r 121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV 198 (517) Q Consensus 121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 198 (517) ..|+ +.|+.||-|+||+|+-+. +|+.||+|+.+..-- . +. ..... T Consensus 18 ~dyei~~~LG~G~fG~V~~a~~k~--t~~~~AiK~i~k~~~----------------~----------~~-----~~~~~ 64 (329) T PTZ00263 18 SDFEMGETLGTGSFGRVRIAKHKG--TGEYYAIKCLKKREI----------------L----------KM-----KQVQH 64 (329) T ss_pred CCCEEEEEEECCCCCEEEEEEECC--CCCEEEEEEEEHHHC----------------C----------CH-----HHHHH T ss_conf 063898897327380999999989--998999999837884----------------5----------98-----99999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHH----HHHHHH Q ss_conf 7888655999988987202446776643000010221783--3530024786324267733200225689----999999 Q gi|254780623|r 199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERL----SVTLVQ 272 (517) Q Consensus 199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~l----a~~l~~ 272 (517) +.+|.+.+..++ +|. |.+.|..+.+++ .+||||++|-.+-+. +...+.-.... +..++. T Consensus 65 ------~~~E~~il~~l~-----Hp~--Iv~l~~~f~~~~~lylvmEy~~gGdL~~~--l~~~~~l~e~~a~~~~~qi~~ 129 (329) T PTZ00263 65 ------VAQEKSILMELS-----HPF--IVNMMCSFQDENRVYFLLEFVVGGELFTH--LRKAGRFPNDVAKFYHAELVL 129 (329) T ss_pred ------HHHHHHHHHHCC-----CCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHH T ss_conf ------999999999779-----989--89099999989999999986899858999--976489999999999999999 Q ss_pred HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 999989744866178786228980289535743403121698 Q gi|254780623|r 273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) + +.-+-..|+.|-|.-|.||+++.+|.+-+.|||+...++. T Consensus 130 a-L~yLH~~~IiHRDLKPeNILl~~~g~vKL~DFGlak~~~~ 170 (329) T PTZ00263 130 A-FEYLHSKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPD 170 (329) T ss_pred H-HHHHHHCCCEECCCCCCCEEECCCCCEEECCHHHHHCCCC T ss_conf 9-9999978886043354324674799886234055420675 No 117 >cd05069 PTKc_Yes Catalytic Domain of the Protein Tyrosine Kinase, Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an Probab=98.72 E-value=3e-08 Score=83.12 Aligned_cols=144 Identities=16% Similarity=0.184 Sum_probs=92.8 Q ss_pred HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 99867--6667788886555502128887236876403104688777788999875321146854334691799999998 Q gi|254780623|r 120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ 197 (517) Q Consensus 120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 197 (517) ++++. +.|+.|+.|.||+|+++. +.+||||+.+++-. .. + T Consensus 5 ~~~l~~~~~IG~G~fG~V~~g~~~~---~~~VAvK~~~~~~~---------------------------~~----~---- 46 (260) T cd05069 5 RESLRLDVKLGQGCFGEVWMGTWNG---TTKVAIKTLKPGTM---------------------------MP----E---- 46 (260) T ss_pred HHHEEEEEEEECCCCCEEEEEEECC---CCEEEEEEECCCCC---------------------------CH----H---- T ss_conf 7996842798118886999999899---98999999876768---------------------------88----9---- Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC-CEEEEECCCCCCCCHHHHHH-HHCCCHH---HHHHHHHH Q ss_conf 8788865599998898720244677664300001022178-33530024786324267733-2002256---89999999 Q gi|254780623|r 198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER-DVITMEWIDGVKISDTEKLR-ACGHDLE---RLSVTLVQ 272 (517) Q Consensus 198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~-~VLvmE~i~G~~i~d~~~l~-~~~~d~~---~la~~l~~ 272 (517) .|.+|++-+.+++. |.|. +.|.-.+.+ -.|+|||++|-++.+.-.-. ....+.. .++..++. T Consensus 47 ------~f~~E~~~l~~l~H-----pnIv--~~~g~~~~~~~~iv~Ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~qia~ 113 (260) T cd05069 47 ------AFLQEAQIMKKLRH-----DKLV--PLYAVVSEEPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIAD 113 (260) T ss_pred ------HHHHHHHHHHHCCC-----CCEE--EEEEEECCCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH T ss_conf ------99999999986799-----8887--6746773697699998079998899997388886899999999999999 Q ss_pred HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 9999897448661787862289802895357434031216989 Q gi|254780623|r 273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) +. .-+-..|+.|.|.-|.||++++++.+-+-|||+...+++. T Consensus 114 gl-~yLH~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~ 155 (260) T cd05069 114 GM-AYIERMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDN 155 (260) T ss_pred HH-HHHHHCCEECCCCCCCEEEECCCCCEEEEECCCCEECCCC T ss_conf 99-9997699034615637289879997898214652573688 No 118 >cd06652 STKc_MEKK2 Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays r Probab=98.72 E-value=3.5e-08 Score=82.57 Aligned_cols=139 Identities=22% Similarity=0.288 Sum_probs=85.7 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-|+.|+-|+||+|+-.+ +|+.||||+.+-+-. .+ ..-.+. . . T Consensus 8 ~~lG~G~fg~Vy~a~~~~--tg~~vAvK~i~~~~~--------------------~~--------~~~~~~-~------~ 50 (265) T cd06652 8 KLLGQGAFGRVYLCYDAD--TGRELAVKQVQFDPE--------------------SP--------ETSKEV-N------A 50 (265) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEECCCC--------------------CH--------HHHHHH-H------H T ss_conf 698318883999999889--997999999931635--------------------55--------679999-9------9 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC---CC-CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-- Q ss_conf 5999988987202446776643000010221---78-33530024786324267733200225689999999999989-- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRT---ER-DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT-- 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s---t~-~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi-- 278 (517) +.+|++-+..+.. +. |.+.|.-+- .. -.++|||++|-.+.+. ++..+. +.+..+..++.|+ T Consensus 51 ~~~Ei~~l~~l~H-----pn--Iv~~~~~~~~~~~~~~~ivmEy~~gg~L~~~--l~~~~~----l~e~~~~~~~~qi~~ 117 (265) T cd06652 51 LECEIQLLKNLLH-----ER--IVQYYGCLRDPMERTLSIFMEHMPGGSIKDQ--LKSYGA----LTENVTRKYTRQILE 117 (265) T ss_pred HHHHHHHHHHCCC-----CC--EEEEEEEEECCCCCEEEEEEEECCCCCHHHH--HHHCCC----CCHHHHHHHHHHHHH T ss_conf 9999999984799-----88--7318899980899889999970192988999--987499----999999999999999 Q ss_pred -----HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf -----74486617878622898028953574340312169 Q gi|254780623|r 279 -----LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 279 -----~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) -..|+.|-|.-|.||+++.+|.+-+.|||+...+. T Consensus 118 al~ylH~~~IiHRDiKp~NIL~~~~g~vKl~DFGla~~~~ 157 (265) T cd06652 118 GVSYLHSNMIVHRDIKGANILRDSVGNVKLGDFGASKRLQ 157 (265) T ss_pred HHHHHHHCCEEECCCCHHHEEECCCCCEEEEECCCCCCCC T ss_conf 9999997998535487898648899999996277541655 No 119 >cd07875 STKc_JNK1 The catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes Probab=98.72 E-value=3.6e-08 Score=82.44 Aligned_cols=149 Identities=20% Similarity=0.257 Sum_probs=83.6 Q ss_pred HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 9867--66677888865555021288872368764031046887777889998753211468543346917999999988 Q gi|254780623|r 121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV 198 (517) Q Consensus 121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 198 (517) ..++ +.|++||-|+||+|+=+. +|+.||||+.+-...+.. .... T Consensus 24 ~rY~i~~~IG~G~fG~V~~a~d~~--t~~~vAIK~i~~~~~~~~--------------------------------~~~~ 69 (364) T cd07875 24 KRYQNLKPIGSGAQGIVCAAYDAI--LERNVAIKKLSRPFQNQT--------------------------------HAKR 69 (364) T ss_pred CCEEEEEEEECCCCEEEEEEEECC--CCCEEEEEEECCHHCCHH--------------------------------HHHH T ss_conf 674880896016386999999889--998999999892242968--------------------------------9999 Q ss_pred HHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHHHH Q ss_conf 7888655999988987202-446776643000010221783353002478632426773320022568---999999999 Q gi|254780623|r 199 TKMEMDLRLEAAAFSEMAE-NTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQSF 274 (517) Q Consensus 199 l~~ElD~~~Ea~n~~~~~~-~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~~~ 274 (517) +.+| ..-++.+.. |.-..-.+..|.-..+.-..-.+||||++|. +.+. ++ ...+... ++..++.+ T Consensus 70 ~~rE------i~il~~l~HpnIV~l~~~~~~~~~~~~~~~~yiV~E~~~~~-L~~~--i~-~~l~~~~i~~i~~Qil~a- 138 (364) T cd07875 70 AYRE------LVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDAN-LCQV--IQ-MELDHERMSYLLYQMLCG- 138 (364) T ss_pred HHHH------HHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCC-HHHH--HH-HCCCHHHHHHHHHHHHHH- T ss_conf 9999------99998679959995889994067555478189999567987-8999--87-339999999999999999- Q ss_pred HHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 9989744866178786228980289535743403121698 Q gi|254780623|r 275 LLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 275 ~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) +.-+-..|+.|.|.-|.||+++.+|.+-+.|||+....++ T Consensus 139 l~ylH~~~IiHRDlKP~NILl~~~~~iKi~DFGlAr~~~~ 178 (364) T cd07875 139 IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT 178 (364) T ss_pred HHHHHHCCCEECCCCHHHEEECCCCCEEEEECCCCCCCCC T ss_conf 9999878834446888887888899889832123523588 No 120 >cd06653 STKc_MEKK3_like_1 Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating Probab=98.72 E-value=3e-08 Score=83.04 Aligned_cols=143 Identities=19% Similarity=0.250 Sum_probs=86.6 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.||-|.||+|+-.+ +|+.||||+..-+- .. .....+. -. T Consensus 8 ~~iG~G~fg~Vy~~~~~~--tg~~~AvK~i~~~~-----------------------~~-----~~~~~~~-------~~ 50 (264) T cd06653 8 KLLGRGAFGEVYLCYDAD--TGRELAVKQVPFDP-----------------------DS-----QETSKEV-------NA 50 (264) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECCCC-----------------------CH-----HHHHHHH-------HH T ss_conf 597228684999999889--99799999985673-----------------------24-----6659999-------99 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC-CCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH------ Q ss_conf 59999889872024467766430000102217-83353002478632426773320022568999999999998------ Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE-RDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH------ 277 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st-~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q------ 277 (517) +.+|.+.+.+++.. .-|..=.++.+... .-.+||||++|-.+.+. ++..+. +.+..+..|+.| T Consensus 51 ~~~Ei~~l~~l~Hp----nIv~~~~~~~~~~~~~~~ivmEy~~gg~L~~~--l~~~~~----l~e~~~~~~~~qi~~al~ 120 (264) T cd06653 51 LECEIQLLKNLRHD----RIVQYYGCLRDPEEKKLSIFVEYMPGGSIKDQ--LKAYGA----LTENVTRRYTRQILQGVS 120 (264) T ss_pred HHHHHHHHHHCCCC----CCCCEEEEEECCCCCEEEEEEECCCCCCHHHH--HHHCCC----CCHHHHHHHHHHHHHHHH T ss_conf 99999999877999----97839999993899889999981495988999--987499----999999999999999999 Q ss_pred -HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf -9744866178786228980289535743403121698 Q gi|254780623|r 278 -TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 278 -i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) +-..|+.|-|.-|.||+++.+|.+-+.|||+...+.. T Consensus 121 ylH~~~iiHRDiKp~NIL~~~~~~vKl~DFG~a~~~~~ 158 (264) T cd06653 121 YLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRIQT 158 (264) T ss_pred HHHHCCEEECCCCHHHEEECCCCCEEEEECCCCCCCCC T ss_conf 99979977665778995488999999986898726553 No 121 >cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (Repeat 2) Domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th Probab=98.72 E-value=9.1e-08 Score=79.35 Aligned_cols=144 Identities=17% Similarity=0.202 Sum_probs=88.5 Q ss_pred HHHHHHHHHHHHHHHEE--CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 66677888865555021--2888723687640310468877778899987532114685433469179999999887888 Q gi|254780623|r 125 DPIAAASIAQVHPAVVH--DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME 202 (517) Q Consensus 125 ePlasASiaQVh~A~l~--d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E 202 (517) +.|++|+-|+||+|+.+ ++++|+.||||..+..- . ++ . T Consensus 10 ~~iG~G~fG~V~~~~~~~~~~~~g~~vAiK~~~~~~------------------------------~---~~-------~ 49 (284) T cd05081 10 QQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHST------------------------------A---EH-------L 49 (284) T ss_pred EEECCCCCEEEEEEEECCEECCCCCEEEEEEECCCC------------------------------H---HH-------H T ss_conf 997147385999879825057888199999988778------------------------------6---88-------9 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC-EEEEECCCCCCCCHHHHHHHHCCC---HHHHHHHHHHHHHHHH Q ss_conf 655999988987202446776643000010221783-353002478632426773320022---5689999999999989 Q gi|254780623|r 203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD-VITMEWIDGVKISDTEKLRACGHD---LERLSVTLVQSFLLHT 278 (517) Q Consensus 203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~-VLvmE~i~G~~i~d~~~l~~~~~d---~~~la~~l~~~~~~qi 278 (517) -+|.+|++.+..++.-. -|.+=.+..+-..+. .|||||++|-++.+.-.-.....+ ...++..++.. +.-+ T Consensus 50 ~~~~~Ei~il~~l~HpN----Iv~~~g~~~~~~~~~~~lV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~~~ia~g-l~yL 124 (284) T cd05081 50 RDFEREIEILKSLQHDN----IVKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKG-MEYL 124 (284) T ss_pred HHHHHHHHHHHHCCCCC----EEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHH T ss_conf 99999999999768998----825888997289967999996489899899997478889999999999999999-9988 Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf 74486617878622898028953574340312169 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) -..|+.|.|.-|.||+++.++++.+-|||+...++ T Consensus 125 H~~~iiHrDlK~~NILld~~~~~Kl~DFGla~~~~ 159 (284) T cd05081 125 GSKRYVHRDLATRNILVESENRVKIGDFGLTKVLP 159 (284) T ss_pred HHCCCCCCCCCHHEEEECCCCCEEEECCCCCEECC T ss_conf 33891416676420798899958990367522668 No 122 >cd06625 STKc_MEKK3_like Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 a Probab=98.72 E-value=3.3e-08 Score=82.74 Aligned_cols=140 Identities=19% Similarity=0.246 Sum_probs=88.0 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-|+.|+-|.||+|+-.. +|+.||||+.+..-... + .-+++ -. T Consensus 8 ~~lG~G~fg~V~~~~~~~--~g~~vAvK~i~~~~~~~---~-------------------------~~~~~-------~~ 50 (263) T cd06625 8 KLLGQGAFGRVYLCYDVD--TGRELAVKQVPFDPDSP---E-------------------------TKKEV-------NA 50 (263) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEECCCCCH---H-------------------------HHHHH-------HH T ss_conf 197217583999999889--99799999981211776---7-------------------------89999-------99 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH---- Q ss_conf 599998898720244677664300001022178--33530024786324267733200225689999999999989---- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT---- 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi---- 278 (517) +.+|++.+.++.. |.| -+.|.-+.++ -.+||||++|-.+.+.- +..+. +.+..+..++.|+ T Consensus 51 ~~~Ei~il~~l~H-----p~I--v~~~~~~~~~~~~~ivmEy~~~g~L~~~l--~~~~~----~~e~~~~~~~~Qi~~al 117 (263) T cd06625 51 LECEIQLLKNLQH-----ERI--VQYYGCLRDDETLSIFMEYMPGGSVKDQL--KAYGA----LTETVTRKYTRQILEGV 117 (263) T ss_pred HHHHHHHHHHCCC-----CCC--CCEEEEEEECCEEEEEEECCCCCCHHHHH--HHCCC----CCHHHHHHHHHHHHHHH T ss_conf 9999999986799-----898--95999999899999999776988789999--88399----99999999999999999 Q ss_pred ---HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf ---744866178786228980289535743403121698 Q gi|254780623|r 279 ---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 279 ---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) -..|+.|-|.-|.||+++.+|.+-+.|||....++. T Consensus 118 ~ylH~~~IiHRDlKp~NiLl~~~g~vKl~DFG~a~~~~~ 156 (263) T cd06625 118 EYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQT 156 (263) T ss_pred HHHHHCCEEEEECCHHHEEECCCCCEEEEECCCCEECCC T ss_conf 999989946720768986888999999983787615454 No 123 >cd05066 PTKc_EphR_A Catalytic Domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul Probab=98.71 E-value=8.3e-08 Score=79.67 Aligned_cols=146 Identities=15% Similarity=0.219 Sum_probs=89.8 Q ss_pred HHHHHHHHHHHHHHHHHEECCC-CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 6766677888865555021288-872368764031046887777889998753211468543346917999999988788 Q gi|254780623|r 123 FDDPIAAASIAQVHPAVVHDIN-GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKM 201 (517) Q Consensus 123 fdePlasASiaQVh~A~l~d~~-~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 201 (517) +++.|++|+-|+||+|+++..+ ....||||+.+.+..+. . T Consensus 8 i~~~iG~G~fG~Vy~~~~~~~~~~~~~VAiK~l~~~~~~~---------------------------------------~ 48 (267) T cd05066 8 IERVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEK---------------------------------------Q 48 (267) T ss_pred EEEEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCHH---------------------------------------H T ss_conf 8369941789599999997799767999999978666979---------------------------------------9 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCC-CCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHHHHHHH Q ss_conf 865599998898720244677664-3000010221783353002478632426773320022568---999999999998 Q gi|254780623|r 202 EMDLRLEAAAFSEMAENTVKDQGF-RVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQSFLLH 277 (517) Q Consensus 202 ElD~~~Ea~n~~~~~~~~~~~~~v-~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~~~~~q 277 (517) .-+|.+|++.+.+++. |.| .+=.++. -...-.|||||++|-.+.+.-.-.....+..+ ++..++.. +.- T Consensus 49 ~~~f~~E~~il~~l~H-----pnIv~l~g~~~-~~~~~~lv~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~ia~g-l~y 121 (267) T cd05066 49 RRDFLGEASIMGQFDH-----PNIIHLEGVVT-KSKPVMIVTEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASG-MKY 121 (267) T ss_pred HHHHHHHHHHHHHCCC-----CCEEEEEEEEC-CCCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHH T ss_conf 9999999999986899-----88824999984-4998999998379997899997368999999999999999999-999 Q ss_pred HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 9744866178786228980289535743403121698 Q gi|254780623|r 278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) +-..|+.|.|.-|.||+++.++.+-+-|||+...+.. T Consensus 122 Lh~~~iiHRDlK~~NiLl~~~~~~Ki~DFGls~~~~~ 158 (267) T cd05066 122 LSDMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLED 158 (267) T ss_pred HHHCCEECCCCCCCEEEECCCCCEEECCCCCCEECCC T ss_conf 9669855466762548988999889854766568778 No 124 >cd05118 STKc_CMGC The catalytic domain of CMGC family Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. Probab=98.71 E-value=3.1e-08 Score=83.03 Aligned_cols=138 Identities=19% Similarity=0.238 Sum_probs=85.2 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|++|+-|.||+|+-++ +|+.||+|+.+..-.. + ..... T Consensus 5 ~~lG~G~fg~Vy~~~~~~--~~~~~AiK~i~~~~~~--------------------~------------~~~~~------ 44 (283) T cd05118 5 GKIGEGTYGVVYKARDKL--TGEIVAIKKIKLRFES--------------------E------------GIPKT------ 44 (283) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHCC--------------------H------------HHHHH------ T ss_conf 894226694999999889--9989999998334539--------------------5------------88999------ Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH---- Q ss_conf 5999988987202446776643000010221--7833530024786324267733200225689999999999989---- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT---- 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi---- 278 (517) ..+|++.+.+++. |. |-+.|.-+. +.-.+||||++|--...+. ..+ ..+-+..+..+++|+ T Consensus 45 ~~~E~~il~~l~H-----pn--Iv~~~~~~~~~~~~~lvmEy~~~~l~~~l~---~~~---~~l~e~~~~~~~~qil~al 111 (283) T cd05118 45 ALREIKLLKELNH-----PN--IIKLLDVFRHKGDLYLVFEFMDTDLYKLIK---DRQ---RGLPESLIKSYLYQLLQGL 111 (283) T ss_pred HHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCHHHHHH---HCC---CCCCHHHHHHHHHHHHHHH T ss_conf 9999999986799-----89--893999999899999998177886579999---728---9989999999999999999 Q ss_pred ---HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf ---7448661787862289802895357434031216989 Q gi|254780623|r 279 ---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 279 ---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) -..|+.|.|.-|-||+++.+|.+-+.|||+...+++. T Consensus 112 ~yLH~~~IiHRDlKPeNILl~~~~~iKl~DFG~a~~~~~~ 151 (283) T cd05118 112 AFCHSHGILHRDLKPENLLINTEGVLKLADFGLARSFGSP 151 (283) T ss_pred HHHHHCCEEECCCCHHHEEECCCCCEEEEEECCCEECCCC T ss_conf 9999799660437656668989998899840456252688 No 125 >cd07830 STKc_MAK_like The catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fer Probab=98.71 E-value=2.6e-08 Score=83.63 Aligned_cols=139 Identities=17% Similarity=0.327 Sum_probs=82.1 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.||+|+-|.||+|+-+. +|+.||||+.+..- .+. + |.. T Consensus 5 ~~iG~G~fg~V~~~~~~~--~~~~vAvK~i~~~~---------------------------~~~----~--------~~~ 43 (283) T cd07830 5 KQLGDGTFGSVYLARNKE--TGELVAIKKMKKKF---------------------------YSW----E--------ECM 43 (283) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECCCC---------------------------CCH----H--------HHH T ss_conf 898417286999999889--99899999988013---------------------------897----8--------999 Q ss_pred HHHHHHHHHHHHCCCCCCCC-CCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH----- Q ss_conf 59999889872024467766-430000102217833530024786324267733200225689999999999989----- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQG-FRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT----- 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi----- 278 (517) ..+|...+.++. +.+. |..=.++.+ ...-.+||||++| .+.+. +.... ...+.+..+..+++|+ T Consensus 44 ~~~E~~~l~~~~----~hpnIv~~~~~~~~-~~~~~iVmEy~~g-~l~~~--l~~~~--~~~~~e~~i~~~~~Ql~~al~ 113 (283) T cd07830 44 NLREVKSLRKLN----EHPNIVKLKEVFRE-NDELYFVFEYMEG-NLYQL--MKDRK--GKPFSESVIRSIIYQILQGLA 113 (283) T ss_pred HHHHHHHHHHHC----CCCCEEEEEEEEEE-CCEEEEEEECCCC-CHHHH--HHHCC--CCCCCHHHHHHHHHHHHHHHH T ss_conf 999999999716----99988268789988-9999999968899-87999--98627--999899999999999999999 Q ss_pred --HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf --744866178786228980289535743403121698 Q gi|254780623|r 279 --LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 279 --~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) -..|++|.|.-|.||+++.+|.+-+.|||+...+.. T Consensus 114 ylH~~~iiHRDIKP~NILl~~~~~iKl~DFG~a~~~~~ 151 (283) T cd07830 114 HIHKHGFFHRDLKPENLLVSGPEVVKIADFGLAREIRS 151 (283) T ss_pred HHHHCCCCCCCCCHHHEEECCCCCEEEEECCCCEECCC T ss_conf 99979936365767997987899889974477656566 No 126 >cd06642 STKc_STK25_YSK1 Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares feat Probab=98.71 E-value=3.3e-08 Score=82.78 Aligned_cols=148 Identities=19% Similarity=0.261 Sum_probs=93.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH Q ss_conf 99999986766677888865555021288872368764031046887777889998753211468543346917999999 Q gi|254780623|r 116 IEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL 195 (517) Q Consensus 116 ~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 195 (517) +++.|... +.|+.||-|.||+|+-.. +|+.||||+....- .. ++. T Consensus 2 p~e~y~~l-~~iG~G~fg~Vy~~~~~~--~~~~vAiK~i~~~~---------------------~~-----------~~~ 46 (277) T cd06642 2 PEELFTKL-ERIGKGSFGEVYKGIDNR--TKEVVAIKIIDLEE---------------------AE-----------DEI 46 (277) T ss_pred HHHCEEEE-EEEECCCCCEEEEEEECC--CCCEEEEEEECHHH---------------------CH-----------HHH T ss_conf 46820985-896027782999999899--99699999985788---------------------84-----------799 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHH Q ss_conf 988788865599998898720244677664300001022178--3353002478632426773320022568---99999 Q gi|254780623|r 196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLER---LSVTL 270 (517) Q Consensus 196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l 270 (517) -++.+|++.+.++.. |. |-+.|..+.+. -.+||||++|-.+.+.- +....+-.. ++..+ T Consensus 47 -------~~~~~Ei~il~~l~h-----pn--Iv~~~~~~~~~~~~~ivmEy~~gg~L~~~l--~~~~l~e~~~~~i~~qi 110 (277) T cd06642 47 -------EDIQQEITVLSQCDS-----PY--ITRYYGSYLKGTKLWIIMEYLGGGSALDLL--KPGPLEETYIATILREI 110 (277) T ss_pred -------HHHHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHHH--HCCCCCHHHHHHHHHHH T ss_conf -------999999999986799-----88--895999999899999999799959999998--44999999999999999 Q ss_pred HHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 999999897448661787862289802895357434031216989 Q gi|254780623|r 271 VQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 271 ~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) +.+ +.-+-..|+.|-|.-|.||+++.+|.+-+.|||+...+++. T Consensus 111 ~~a-l~ylH~~~iiHRDlKp~NILl~~~~~vKl~DFGla~~~~~~ 154 (277) T cd06642 111 LKG-LDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDT 154 (277) T ss_pred HHH-HHHHHHCCCCCCCCCCCCCEECCCCCEEEEEECEEEECCCC T ss_conf 999-99999789550424743111668998888431203551588 No 127 >cd05082 PTKc_Csk Catalytic Domain of the Protein Tyrosine Kinase, C-terminal Src kinase. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re Probab=98.70 E-value=9.5e-08 Score=79.20 Aligned_cols=144 Identities=19% Similarity=0.228 Sum_probs=90.4 Q ss_pred HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 99867--6667788886555502128887236876403104688777788999875321146854334691799999998 Q gi|254780623|r 120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ 197 (517) Q Consensus 120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 197 (517) +++++ +.|++||.|.||+|..+ |++||||+.+. | ...+ T Consensus 5 ~~~~~~~~~iG~G~fg~V~~~~~~----g~~vAvK~i~~--------~------------------------~~~~---- 44 (256) T cd05082 5 MKELKLLQTIGKGEFGDVMLGDYR----GNKVAVKCIKN--------D------------------------ATAQ---- 44 (256) T ss_pred HHHEEEEEEEEECCCCEEEEEEEC----CEEEEEEEECC--------C------------------------CCHH---- T ss_conf 799797459820898389999989----93999999787--------3------------------------0599---- Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHH-CCCHH---HHHHHHHHH Q ss_conf 87888655999988987202446776643000010221783353002478632426773320-02256---899999999 Q gi|254780623|r 198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRAC-GHDLE---RLSVTLVQS 273 (517) Q Consensus 198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~-~~d~~---~la~~l~~~ 273 (517) +|.+|+..+.+++.- .-|.+=.+..+-.+.-.+||||++|-++.+.-.-+.. ..+.. .++..++++ T Consensus 45 ------~f~~E~~~l~~l~Hp----nIv~~~g~~~~~~~~~~iv~Ey~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~g 114 (256) T cd05082 45 ------AFLAEASVMTQLRHS----NLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEA 114 (256) T ss_pred ------HHHHHHHHHHHCCCC----CCCEEEEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHH T ss_conf ------999999999857998----9880999999379829999974899978998865699779999999999999999 Q ss_pred HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 99989744866178786228980289535743403121698 Q gi|254780623|r 274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) +..+-..|+.|.|.-|.||+++.++.+.+-|||+....+. T Consensus 115 -l~yLH~~~iiHrDlK~~NiLv~~~~~~Kl~DFGls~~~~~ 154 (256) T cd05082 115 -MEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS 154 (256) T ss_pred -HHHHHHCCCCCCCCCHHHEEECCCCCEEEEECCCCEECCC T ss_conf -9999739937775776228898999289800577707777 No 128 >cd06622 PKc_MAPKK_PBS2_like Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cer Probab=98.70 E-value=4.1e-08 Score=82.05 Aligned_cols=142 Identities=16% Similarity=0.227 Sum_probs=86.3 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.||.|+-|.||+|+-+. +|+.||+|+.+....+ .-++ . T Consensus 7 ~~IG~G~fg~Vy~a~~~~--t~~~vAiK~i~~~~~~-----------------------------~~~~----------~ 45 (286) T cd06622 7 DELGKGNYGSVYKVLHRP--TGVTMAMKEIRLELDE-----------------------------SKFN----------Q 45 (286) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHCH-----------------------------HHHH----------H T ss_conf 896138790999999989--9969999998644098-----------------------------9999----------9 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHH-H-HHCCCH---HHHHHHHHHHHHHH Q ss_conf 599998898720244677664300001022178--3353002478632426773-3-200225---68999999999998 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKL-R-ACGHDL---ERLSVTLVQSFLLH 277 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l-~-~~~~d~---~~la~~l~~~~~~q 277 (517) +.+|...+.++.. |. |-+.|..+.++ -.+||||++|-.+.++-.. . ..+.+. ..++..++.+.-.. T Consensus 46 ~~~Ei~il~~l~h-----pn--Iv~l~~~~~~~~~~~ivmE~~~~G~L~~l~~~~~~~~~~~e~~~~~i~~ql~~gL~yl 118 (286) T cd06622 46 IIMELDILHKAVS-----PY--IVDFYGAFFIEGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFL 118 (286) T ss_pred HHHHHHHHHHCCC-----CC--EECCCEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 9999999986799-----98--9435418998998999998079991999986033357899999999999999999999 Q ss_pred HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 9744866178786228980289535743403121698 Q gi|254780623|r 278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) --..|+.|-|.-|.||+++.+|.+-+.|||+.+.+.. T Consensus 119 H~~~~IiHRDIKP~NILi~~~g~vKl~DFG~a~~~~~ 155 (286) T cd06622 119 KEEHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVA 155 (286) T ss_pred HHHCCEEECCCCHHHEEECCCCCEEEEECCCCCCCCC T ss_conf 8728974155777766688999899973788866566 No 129 >cd05626 STKc_LATS2 STKc_LATS2: Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with poor prognosis in acute lymphoblastic leukemia and breast cancer. Probab=98.70 E-value=2.3e-08 Score=84.01 Aligned_cols=139 Identities=22% Similarity=0.321 Sum_probs=85.5 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.||-|+||+|+-++ +|+.||+|+.+.. + ...+ +....+ T Consensus 7 k~LG~G~fG~V~la~~~~--tg~~~AiK~i~k~-------~---------~~~~---------------~~~~~~----- 48 (381) T cd05626 7 KTLGIGAFGEVCLACKVD--THALYAMKTLRKK-------D---------VLNR---------------NQVAHV----- 48 (381) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEEHH-------H---------CCCH---------------HHHHHH----- T ss_conf 287138784999999889--9988999998067-------8---------5598---------------999999----- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHH----HHHHHHHHHHHH Q ss_conf 5999988987202446776643000010221783--3530024786324267733200225689----999999999989 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERL----SVTLVQSFLLHT 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~l----a~~l~~~~~~qi 278 (517) .+|.+-+.+.. .+ .|.+.|..+.++. .|||||++|-.+.+. +...+.-.... +..++.+ +.-+ T Consensus 49 -~~E~~il~~~~-----hp--~Iv~l~~~f~~~~~~ylvmEy~~gGdL~~~--l~~~~~~~e~~a~~~~~qi~~a-L~yl 117 (381) T cd05626 49 -KAERDILAEAD-----NE--WVVKLYYSFQDKDNLYFVMDYIPGGDMMSL--LIRMEVFPEVLARFYIAELTLA-IESV 117 (381) T ss_pred -HHHHHHHHHCC-----CC--CCCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHH T ss_conf -99999998689-----98--979499999989999999974799828787--7634999999999999999999-9999 Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC Q ss_conf 7448661787862289802895357434031216 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL 312 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l 312 (517) -..|+.|-|.-|.||+++.+|.+-+.|||++..+ T Consensus 118 H~~gIiHRDLKPeNILl~~~g~iKL~DFGla~~~ 151 (381) T cd05626 118 HKMGFIHRDIKPDNILIDLDGHIKLTDFGLCTGF 151 (381) T ss_pred HHCCCCCCCCCCCEEEECCCCCEEECCCCCCCCC T ss_conf 8666730215467367889998898156765344 No 130 >cd07850 STKc_JNK The catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different Probab=98.70 E-value=2e-08 Score=84.41 Aligned_cols=153 Identities=18% Similarity=0.229 Sum_probs=84.7 Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH Q ss_conf 9999867--66677888865555021288872368764031046887777889998753211468543346917999999 Q gi|254780623|r 118 ELYCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL 195 (517) Q Consensus 118 ~~F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 195 (517) ++...++ +.|+.||-|+||+|+-+. +|+.||||+.+....... . T Consensus 13 ~v~~rY~i~~~lG~G~fG~V~~a~d~~--t~~~vAiK~i~~~~~~~~--------------------------------~ 58 (353) T cd07850 13 TVLKRYQNLKPIGSGAQGIVCAAYDTV--TKQNVAIKKLSRPFQNVT--------------------------------H 58 (353) T ss_pred CCCCCCEEEEEEECCCCEEEEEEEECC--CCCEEEEEEECHHHCCHH--------------------------------H T ss_conf 030262883697314084999999889--998999999883453828--------------------------------8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHH Q ss_conf 9887888655999988987202-446776643000010221783353002478632426773320022568---999999 Q gi|254780623|r 196 EQVTKMEMDLRLEAAAFSEMAE-NTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLV 271 (517) Q Consensus 196 ~~~l~~ElD~~~Ea~n~~~~~~-~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~ 271 (517) ..... +|...+..+.. |.-..-++..|+-.-+-...-.+||||++|- +.+.- ....+... ++..++ T Consensus 59 ~~~~~------rEi~~l~~l~HpnIv~l~~~f~~~~~~~~~~~~yivmE~~~~~-L~~~~---~~~l~~~~~~~i~~Qil 128 (353) T cd07850 59 AKRAY------RELVLMKLVNHKNIIGLLNAFTPQKSLEEFQDVYLVMELMDAN-LCQVI---QMDLDHERMSYLLYQML 128 (353) T ss_pred HHHHH------HHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCC-HHHHH---HCCCCHHHHHHHHHHHH T ss_conf 99999------9999998679969993888984066433276389999417998-99998---60399999999999999 Q ss_pred HHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 99999897448661787862289802895357434031216989 Q gi|254780623|r 272 QSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 272 ~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) .+ +.-+-..|+.|.|.-|.||+++.+|.+-+.|||+....... T Consensus 129 ~a-L~ylH~~gIiHRDLKPeNILl~~~~~vKL~DFGlA~~~~~~ 171 (353) T cd07850 129 CG-IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTS 171 (353) T ss_pred HH-HHHHHHCCCEECCCCHHHEEECCCCCEEECCCCHHEECCCC T ss_conf 99-99998789355668757779989997862231220003688 No 131 >cd06633 STKc_TAO3 Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pa Probab=98.70 E-value=7.4e-08 Score=80.07 Aligned_cols=151 Identities=17% Similarity=0.167 Sum_probs=91.3 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH Q ss_conf 89999998676667788886555502128887236876403104688777788999875321146854334691799999 Q gi|254780623|r 115 PIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRA 194 (517) Q Consensus 115 ~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e 194 (517) ++++.|... +.|+.||-|.||+|+-+. +|+.||||+....-.. + .+ T Consensus 18 dp~~~y~~l-~~IG~G~fg~Vy~a~~~~--tg~~vAiK~i~~~~~~--------------------------~-~~---- 63 (313) T cd06633 18 DPEEIFVGL-HEIGHGSFGAVYFATNSH--TNEVVAVKKMSYSGKQ--------------------------T-NE---- 63 (313) T ss_pred CHHHHEEEE-EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHCC--------------------------C-HH---- T ss_conf 968842423-896037585999999889--9989999998634413--------------------------6-59---- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHH---HHHHH Q ss_conf 99887888655999988987202446776643000010221783--35300247863242677332002256---89999 Q gi|254780623|r 195 LEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLE---RLSVT 269 (517) Q Consensus 195 ~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~ 269 (517) - .-++.+|.+.+.+++. |.|. +.|.-+.+++ .+||||++|-..+... ......+-. .++.. T Consensus 64 ~------~~~~~~Ei~il~~l~H-----pnIV--~~~~~~~~~~~~yivmEy~~G~~~~~l~-~~~~~l~e~~~~~i~~q 129 (313) T cd06633 64 K------WQDIIKEVKFLQQLKH-----PNTI--EYKGCYLKEHTAWLVMEYCLGSASDLLE-VHKKPLQEVEIAAITHG 129 (313) T ss_pred H------HHHHHHHHHHHHHCCC-----CCCC--CEEEEEEECCEEEEEEEECCCCHHHHHH-HHCCCCCHHHHHHHHHH T ss_conf 9------9999999999997799-----8999--0989999899889999962797378999-83689999999999999 Q ss_pred HHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 999999989744866178786228980289535743403121698 Q gi|254780623|r 270 LVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 270 l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) ++.+ +.-+-..|+.|-|.-|.||+++.+|.+-+.|||+....++ T Consensus 130 il~a-L~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFG~a~~~~~ 173 (313) T cd06633 130 ALQG-LAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASKSSP 173 (313) T ss_pred HHHH-HHHHHHCCEEECCCCHHHEEECCCCCEEEEECCCCEECCC T ss_conf 9999-9999868966530666555688999989985178664379 No 132 >cd07839 STKc_CDK5 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5 subfamily. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiatio Probab=98.70 E-value=1.9e-08 Score=84.59 Aligned_cols=138 Identities=17% Similarity=0.290 Sum_probs=80.1 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.||.||-|.||+|+-++ +|+.||||+.+..-.. +....... T Consensus 6 ~~iG~G~fg~V~~~~~~~--t~~~vAiK~i~~~~~~--------------------------------~~~~~~~~---- 47 (284) T cd07839 6 EKIGEGTYGTVFKAKNRE--THEIVALKRVRLDDDD--------------------------------EGVPSSAL---- 47 (284) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEECCCCC--------------------------------HHHHHHHH---- T ss_conf 482047283999999889--9979999998303464--------------------------------67799999---- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHH--CCCH---HHHHHHHHHHHHHH Q ss_conf 599998898720244677664300001022178--3353002478632426773320--0225---68999999999998 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRAC--GHDL---ERLSVTLVQSFLLH 277 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~--~~d~---~~la~~l~~~~~~q 277 (517) +|.+.+..+.. |. |-+.|.-+.++ -.+||||++| .+.+. +... ..+. +.+...++.+. .- T Consensus 48 --~Ei~il~~l~h-----pn--Iv~~~~~~~~~~~~~ivmE~~~~-~l~~~--~~~~~~~~~~~~~~~~~~qil~gl-~y 114 (284) T cd07839 48 --REICLLKELKH-----KN--IVRLYDVLHSDKKLTLVFEYCDQ-DLKKY--FDSCNGDIDPEIVKSFMFQLLKGL-AF 114 (284) T ss_pred --HHHHHHHHCCC-----CC--CCCEEEEECCCCEEEEEEECCCC-CHHHH--HHHHCCCCCHHHHHHHHHHHHHHH-HH T ss_conf --99999986799-----99--72021125009979999960797-78999--997279999999999999999999-99 Q ss_pred HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf 974486617878622898028953574340312169 Q gi|254780623|r 278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) +-..|+.|-|.-|.||+++.+|.+-+.|||+...++ T Consensus 115 lH~~~IiHRDiKpeNILl~~~~~vKL~DFGla~~~~ 150 (284) T cd07839 115 CHSHNVLHRDLKPQNLLINKNGELKLADFGLARAFG 150 (284) T ss_pred HHHCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCC T ss_conf 986985712177302688899999995517663169 No 133 >cd05575 STKc_SGK STKc_SGK: Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Probab=98.70 E-value=2.8e-08 Score=83.31 Aligned_cols=134 Identities=18% Similarity=0.237 Sum_probs=79.9 Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67788886555502128887236876403104688777788999875321146854334691799999998878886559 Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR 206 (517) Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~ 206 (517) |+.||-|+||+|+-+. +|+.||+|+.+...- .+. .-...+..| T Consensus 3 LG~G~fG~V~~a~~k~--t~~~~AiK~i~k~~~----------------~~~---------------~~~~~~~~E---- 45 (323) T cd05575 3 IGKGSFGKVLLAKHKE--DGKFYAVKVLQKKAI----------------LKK---------------NEQKHIMAE---- 45 (323) T ss_pred EEECCCEEEEEEEECC--CCCEEEEEEECHHHC----------------CCH---------------HHHHHHHHH---- T ss_conf 7328495999999889--998999999827883----------------587---------------899999999---- Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH------ Q ss_conf 9998898720244677664300001022178--33530024786324267733200225689999999999989------ Q gi|254780623|r 207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT------ 278 (517) Q Consensus 207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi------ 278 (517) ...+ .++. ++|. |.+.|..+.++ -.+||||++|-.+.+. +...+. +.+.-+..|+.|+ T Consensus 46 --~~il---~~~l-~Hp~--Iv~l~~~f~~~~~~ylvmEy~~gGdL~~~--l~~~~~----l~e~~a~~~~~qi~~aL~y 111 (323) T cd05575 46 --RNVL---LKNV-KHPF--LVGLHYSFQTKEKLYFVLDYVNGGELFFH--LQRERS----FPEPRARFYAAEIASALGY 111 (323) T ss_pred --HHHH---HHHC-CCCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCC----CCHHHHHHHHHHHHHHHHH T ss_conf --9999---9868-9998--89499999989999999968899888999--987499----9999999999999999999 Q ss_pred -HHCCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf -744866178786228980289535743403121 Q gi|254780623|r 279 -LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 279 -~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) -..|+.|-|.-|.||+++.+|.+.+.|||+... T Consensus 112 lH~~~IiHRDLKPeNILl~~~g~ikL~DFGlak~ 145 (323) T cd05575 112 LHSLNIIYRDLKPENILLDSKGHVVLTDFGLCKE 145 (323) T ss_pred HHHCCCCCCCCCCCCCCCCCCCCEEEEECHHHHH T ss_conf 9987944356674333205899788602015343 No 134 >cd05583 STKc_MSK_N STKc_MSK_N: Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active Probab=98.70 E-value=1.3e-07 Score=78.07 Aligned_cols=146 Identities=12% Similarity=0.193 Sum_probs=84.8 Q ss_pred HHHHHHHHHHHHHHHEE-CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021-28887236876403104688777788999875321146854334691799999998878886 Q gi|254780623|r 125 DPIAAASIAQVHPAVVH-DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM 203 (517) Q Consensus 125 ePlasASiaQVh~A~l~-d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El 203 (517) +.||.|+-|+||.|+-. +..+|+.||||+.+..-. ..+-. ..+ . T Consensus 6 ~~iG~G~fg~V~~a~~~~~~~~~~~~AiK~~~k~~~---~~~~~-----------------------~~~----~----- 50 (288) T cd05583 6 RVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATI---VQKAK-----------------------TAE----H----- 50 (288) T ss_pred EEEECCCCEEEEEEEECCCCCCCCEEEEEEECHHHH---HHHHH-----------------------HHH----H----- T ss_conf 794148883999999855378795899999807884---12267-----------------------899----9----- Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHHHCCC---HHHHHHHHHHHHHHHH Q ss_conf 559999889872024467766430000102217--83353002478632426773320022---5689999999999989 Q gi|254780623|r 204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRACGHD---LERLSVTLVQSFLLHT 278 (517) Q Consensus 204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~~~~d---~~~la~~l~~~~~~qi 278 (517) ...|...+..... .+. |.+.|.-+.+ .-.+||||++|-.+.+.-. +....+ -+.++..++.+ ++-+ T Consensus 51 -~~~E~~~l~~l~~----~~~--Iv~l~~~~~~~~~~yivmE~~~gg~L~~~l~-~~~~l~e~~~~~~~~qil~~-l~yl 121 (288) T cd05583 51 -TRTERQVLEAVRR----CPF--LVTLHYAFQTDTKLHLILDYVNGGELFTHLY-QREHFTESEVRVYIAEIVLA-LDHL 121 (288) T ss_pred -HHHHHHHHHHCCC----CCC--EEEEEEEEEECCEEEEEEECCCCCCHHHHHH-HCCCCCHHHHHHHHHHHHHH-HHHH T ss_conf -9999999997059----997--7799999998999999997889988999998-75998999999999999999-9999 Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 744866178786228980289535743403121698 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) -..|+.|-|..|.||+++.+|++.+.|||+...+.. T Consensus 122 H~~~ivHRDiKp~NILi~~~~~ikl~DFG~a~~~~~ 157 (288) T cd05583 122 HQLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLA 157 (288) T ss_pred HHCCEEECCCCHHHCCCCCCCCEEEEECCCCEECCC T ss_conf 988903166771324345889989988675734358 No 135 >cd05628 STKc_NDR1 STKc_NDR1: Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, muscle, lung and spleen. It is not an essential protein because mice deficient o Probab=98.70 E-value=4e-08 Score=82.15 Aligned_cols=146 Identities=24% Similarity=0.293 Sum_probs=90.3 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|++||-|+||+|+-++ +|+.||+|+.+.. + +.++ +-...+..| T Consensus 7 k~iG~G~fG~V~~~~~~~--tg~~~AiK~i~k~-------~---------~~~~---------------~~~~~~~~E-- 51 (363) T cd05628 7 KVIGRGAFGEVRLVQKKD--TGHVYAMKILRKA-------D---------MLEK---------------EQVGHIRAE-- 51 (363) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECHH-------H---------CCCH---------------HHHHHHHHH-- T ss_conf 582128684999999899--9989999998167-------8---------1589---------------999999999-- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCC-CH---HHHHHHHHHHHHHHH Q ss_conf 5999988987202446776643000010221783--35300247863242677332002-25---689999999999989 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGH-DL---ERLSVTLVQSFLLHT 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~-d~---~~la~~l~~~~~~qi 278 (517) ...+... +++ .|.+.|..+.+++ .|||||++|-.+.+. +...+. .- ..++..++.+ +.-+ T Consensus 52 ----~~il~~~-----~~~--~iv~l~~~f~~~~~lylvmEy~~GGdL~~~--l~~~~~l~e~~~~~~~~qi~~a-L~~l 117 (363) T cd05628 52 ----RDILVEA-----DSL--WVVKMFYSFQDKLNLYLIMEFLPGGDMMTL--LMKKDTLTEEETQFYIAETVLA-IDSI 117 (363) T ss_pred ----HHHHHHC-----CCC--CEEEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHH T ss_conf ----9999868-----999--776598999989989999955589728998--8726998999999999999999-9999 Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHH Q ss_conf 74486617878622898028953574340312169899999 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRF 319 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~ 319 (517) -..|+.|-|.-|.||+++.+|.+-+.|||++..+....+.. T Consensus 118 H~~gIiHRDLKPeNILld~~g~iKL~DFGla~~l~~~~~~~ 158 (363) T cd05628 118 HQLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTE 158 (363) T ss_pred HHCCEEECCCCCCEEEECCCCCEEECCCCCCCCCCCCCCCC T ss_conf 74878951256661788899988976477652234233320 No 136 >cd05584 STKc_p70S6K STKc_p70S6K: Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p7 Probab=98.70 E-value=1.6e-07 Score=77.36 Aligned_cols=140 Identities=16% Similarity=0.248 Sum_probs=83.8 Q ss_pred HHHHHHHHHHHHHHEE-CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 6677888865555021-288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 126 PIAAASIAQVHPAVVH-DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 126 PlasASiaQVh~A~l~-d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) .|+.|+-|.||.|+-. +.++|+.+|+||.+..-- ..+ +.-...+.. T Consensus 3 ~LG~G~fG~V~la~~~~~~~t~~~~AiKvi~k~~~---~~~---------------------------~~~~~~~~~--- 49 (323) T cd05584 3 VLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATI---VRN---------------------------QKDTAHTKA--- 49 (323) T ss_pred EECCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHH---CCC---------------------------HHHHHHHHH--- T ss_conf 86228981899999745588895899999807884---406---------------------------788999999--- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHH----HHHHHHHHHHHH Q ss_conf 5999988987202446776643000010221783--3530024786324267733200225689----999999999989 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERL----SVTLVQSFLLHT 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~l----a~~l~~~~~~qi 278 (517) |.+-++.+. +|. |.+.|..+.+++ .+||||++|-.+.+. +...+.-.... +..++.+ +.-+ T Consensus 50 ---E~~il~~l~-----Hp~--Iv~l~~~f~~~~~lylVmEy~~GGdL~~~--l~~~~~~~e~~~~~~~~qi~~a-L~yl 116 (323) T cd05584 50 ---ERNILEAVK-----HPF--IVDLIYAFQTGGKLYLILEYLSGGELFMH--LEREGIFMEDTACFYLSEISLA-LEHL 116 (323) T ss_pred ---HHHHHHHCC-----CCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHH T ss_conf ---999998679-----989--89099999989999999964799979999--9764999999999999999999-9999 Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 744866178786228980289535743403121 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) -..|+.|-|.-|.||+++.+|.+-+.|||+... T Consensus 117 H~~gIiHRDlKPeNILl~~~g~iKL~DFGlak~ 149 (323) T cd05584 117 HQQGIIYRDLKPENILLDAQGHVKLTDFGLCKE 149 (323) T ss_pred HHCCEEECCCCCCCCCCCCCCCEEECCHHHHHH T ss_conf 749789573662134657899877410245554 No 137 >cd05601 STKc_CRIK STKc_CRIK: Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnormal cytokinesis and massive apoptosis in neuronal precursors. A Down syndrome Probab=98.70 E-value=5.3e-08 Score=81.15 Aligned_cols=140 Identities=18% Similarity=0.319 Sum_probs=88.4 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.||.|.||+|+-+. +|+.||||+.+..... . . +-.. . T Consensus 7 ~~LG~G~fG~V~~a~~~~--tg~~~AiK~i~k~~~~--------------------~-------~----~~~~------~ 47 (330) T cd05601 7 SVIGRGHFGEVQVVREKA--TGDIYAMKVMKKSVLL--------------------A-------Q----ETVS------F 47 (330) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHCC--------------------C-------H----HHHH------H T ss_conf 684217582999999889--9989999998268867--------------------9-------8----9999------9 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH----- Q ss_conf 5999988987202446776643000010221783--353002478632426773320022568999999999998----- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH----- 277 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q----- 277 (517) +..|...+.... +| .|.+.+..+.+++ .+||||++|-.+.+. +...+ ..+.+..+..|+.| T Consensus 48 ~~~E~~il~~~~-----hp--~Iv~l~~~f~~~~~~yivmEy~~gGdL~~~--l~~~~---~~l~e~~~~~~~~qi~~al 115 (330) T cd05601 48 FEEERDIMAIAN-----SP--WIPQLQYAFQDKDNLYLVMEYHPGGDLLSL--LNRYE---DQFDESMAQFYLAELVLAI 115 (330) T ss_pred HHHHHHHHHHCC-----CC--CCCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCC---CCCCHHHHHHHHHHHHHHH T ss_conf 999999998679-----99--889499999989999999983799748999--98618---9999999999999999999 Q ss_pred --HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf --97448661787862289802895357434031216989 Q gi|254780623|r 278 --TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 278 --i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) +-..|+.|-|.-|.||+++.+|.+-+.|||+...++.. T Consensus 116 ~yLH~~gIiHRDiKPeNILld~~g~iKL~DFGla~~~~~~ 155 (330) T cd05601 116 HSLHQMGYVHRDIKPENILIDRTGHIKLADFGSAAKLNAN 155 (330) T ss_pred HHHHHCCEEECCCCCCCEEECCCCCEEEEECCCEEEECCC T ss_conf 9997486884546500034658998898026554771588 No 138 >cd05039 PTKc_Csk_like Catalytic Domain of C-terminal Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk Probab=98.70 E-value=5.4e-08 Score=81.11 Aligned_cols=137 Identities=15% Similarity=0.167 Sum_probs=89.8 Q ss_pred HHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 67666778888655550212888723687640310468877778899987532114685433469179999999887888 Q gi|254780623|r 123 FDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME 202 (517) Q Consensus 123 fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E 202 (517) |.++||.|+-|.||+|+.+ |++||||+.+.+- ...+ T Consensus 10 ~~~~iG~G~fg~Vy~g~~~----g~~VAiK~~~~~~-------------------------------~~~~--------- 45 (256) T cd05039 10 LGATIGKGEFGDVMLGDYR----GQKVAVKCLKDDS-------------------------------TAAQ--------- 45 (256) T ss_pred EEEEEEECCCEEEEEEEEC----CCEEEEEEECCCC-------------------------------CHHH--------- T ss_conf 8339920898089999999----9199999988886-------------------------------5699--------- Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHH-HHCCC---HHHHHHHHHHHHHH Q ss_conf 655999988987202446776643000010221--7833530024786324267733-20022---56899999999999 Q gi|254780623|r 203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLR-ACGHD---LERLSVTLVQSFLL 276 (517) Q Consensus 203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~-~~~~d---~~~la~~l~~~~~~ 276 (517) +|.+|++.+.+++. |.| -+.|.-.. ..-.|||||++|-++.+.-.-. ....+ +..++..++++ +. T Consensus 46 -~f~~E~~~l~~l~H-----pNI--v~~~g~~~~~~~~~iV~Ey~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~g-l~ 116 (256) T cd05039 46 -AFLAEASVMTTLRH-----PNL--VQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEG-ME 116 (256) T ss_pred -HHHHHHHHHHHCCC-----CCE--EEEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHH-HH T ss_conf -99999999985899-----888--2088899889999999975899978999975489899999999999999999-99 Q ss_pred HHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC Q ss_conf 897448661787862289802895357434031216 Q gi|254780623|r 277 HTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL 312 (517) Q Consensus 277 qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l 312 (517) -+-..|+.|.|.-|.||+++.+|.+-+-|||+.... T Consensus 117 yLH~~~iiHrDlK~~NiLl~~~~~~Kl~DFGls~~~ 152 (256) T cd05039 117 YLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEA 152 (256) T ss_pred HHHHCCCEECCCCCCEEEECCCCCEEEEECCCCEEC T ss_conf 997589332546751388899994899305467006 No 139 >cd05116 PTKc_Syk Catalytic Domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio Probab=98.70 E-value=3.4e-07 Score=74.97 Aligned_cols=141 Identities=18% Similarity=0.220 Sum_probs=89.3 Q ss_pred HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 66778888655550212888723687640310468877778899987532114685433469179999999887888655 Q gi|254780623|r 126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL 205 (517) Q Consensus 126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~ 205 (517) -|++|+-|+||+|..++.++++.||||+.+-... .+ ...+ .| T Consensus 2 ~LG~G~fG~V~~g~~~~~~~~~~VAvK~~~~~~~--------------------~~--------~~~~----------~~ 43 (257) T cd05116 2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNN--------------------DP--------ALKD----------EL 43 (257) T ss_pred CCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCC--------------------CH--------HHHH----------HH T ss_conf 0430888099998999789997999999853569--------------------97--------9999----------99 Q ss_pred HHHHHHHHHHHCCCCCCCC-CCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHH-CCC---HHHHHHHHHHHHHHHHHH Q ss_conf 9999889872024467766-43000010221783353002478632426773320-022---568999999999998974 Q gi|254780623|r 206 RLEAAAFSEMAENTVKDQG-FRVPKIDWNRTERDVITMEWIDGVKISDTEKLRAC-GHD---LERLSVTLVQSFLLHTLR 280 (517) Q Consensus 206 ~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~-~~d---~~~la~~l~~~~~~qi~~ 280 (517) .+|++.+.+++. |. |.+=.+.. +..-++||||+++-++.+.- ... ... ...++..++.. +.-+-. T Consensus 44 ~~E~~~l~~l~H-----pnIv~~~g~~~--~~~~~ivmE~~~~g~L~~~L--~~~~~~~~~~~~~~~~qia~g-l~yLH~ 113 (257) T cd05116 44 LREANVMQQLDN-----PYIVRMIGICE--AESWMLVMELAELGPLNKFL--QKNKHVTEKNITELVHQVSMG-MKYLEE 113 (257) T ss_pred HHHHHHHHHCCC-----CCEEEEEEEEE--CCCEEEEEECCCCCCHHHHH--HHCCCCCHHHHHHHHHHHHHH-HHHHHH T ss_conf 999999986799-----98805889995--89479999858999999998--537999999999999999999-999986 Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 4866178786228980289535743403121698 Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) .|+.|.|.-|.||+++.++.+-+-|||+...++. T Consensus 114 ~~ivHrDLK~~NiLl~~~~~~Kl~DFGls~~~~~ 147 (257) T cd05116 114 TNFVHRDLAARNVLLVTQHYAKISDFGLSKALGA 147 (257) T ss_pred CCCCCCCCCHHHEEECCCCCEEEEECCCCEECCC T ss_conf 8937661676558884899789997476426679 No 140 >cd07860 STKc_CDK2_3 The catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A comp Probab=98.70 E-value=4.5e-08 Score=81.76 Aligned_cols=137 Identities=20% Similarity=0.316 Sum_probs=80.2 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-|+.||-|.||+|+-+ .+|+.||||+.+-.... +.....+. T Consensus 6 ~~iG~G~fg~V~~~~~~--~t~~~vAiK~i~~~~~~--------------------------------~~~~~~~~---- 47 (284) T cd07860 6 EKIGEGTYGVVYKARNK--LTGEVVALKKIRLDTET--------------------------------EGVPSTAI---- 47 (284) T ss_pred EECCCCCCEEEEEEEEC--CCCCEEEEEEECCCCCC--------------------------------HHHHHHHH---- T ss_conf 78523658499999988--99989999998122133--------------------------------36699999---- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH--- Q ss_conf 5999988987202446776643000010221--78335300247863242677332002256899999999999897--- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL--- 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~--- 279 (517) +|.+.+.++. .|.| =+.|.-+- ..-.+||||++| .+.+. ++.. ....+.+..+..|++|++ T Consensus 48 --~Ei~il~~l~-----HpnI--v~l~~~~~~~~~~yiv~E~~~~-~L~~~--~~~~--~~~~~~~~~i~~~~~Qil~al 113 (284) T cd07860 48 --REISLLKELN-----HPNI--VKLLDVIHTENKLYLVFEFLHQ-DLKKF--MDAS--PLSGIPLPLIKSYLFQLLQGL 113 (284) T ss_pred --HHHHHHHHCC-----CCCE--EEEEEEECCCCEEEEEEECCCC-CHHHH--HHHC--CCCCCCHHHHHHHHHHHHHHH T ss_conf --9999998679-----9998--1461004449989999964898-78999--8752--568999999999999999999 Q ss_pred ----HCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf ----4486617878622898028953574340312169 Q gi|254780623|r 280 ----RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 280 ----~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) ..|+.|.|.-|.||+++.+|.+-+.|||+...+. T Consensus 114 ~yLH~~~IiHRDiKPeNILl~~~~~iKl~DFGla~~~~ 151 (284) T cd07860 114 AFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFG 151 (284) T ss_pred HHHHHCCCEEEECCHHHEEECCCCCEEEEECCCCCCCC T ss_conf 99987893673267566468899989994357522468 No 141 >cd05034 PTKc_Src_like Catalytic Domain of Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t Probab=98.70 E-value=3.2e-08 Score=82.87 Aligned_cols=142 Identities=17% Similarity=0.201 Sum_probs=91.3 Q ss_pred HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 9867--66677888865555021288872368764031046887777889998753211468543346917999999988 Q gi|254780623|r 121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV 198 (517) Q Consensus 121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 198 (517) ++|+ +.|++||-|+||+|+.+. +.+||||+.+++-. +. + T Consensus 6 ~~~~l~~~iG~G~fG~Vy~~~~~~---~~~VAvK~l~~~~~---------------------------~~----~----- 46 (261) T cd05034 6 ESLKLERKLGAGQFGEVWMGTWNG---TTKVAVKTLKPGTM---------------------------SP----E----- 46 (261) T ss_pred HHEEEEEEEECCCCCEEEEEEECC---CCEEEEEEECCCCC---------------------------CH----H----- T ss_conf 995982598428883899999999---99999999874789---------------------------99----9----- Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHH-HCCCHH---HHHHHHHH Q ss_conf 788865599998898720244677664300001022--178335300247863242677332-002256---89999999 Q gi|254780623|r 199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRA-CGHDLE---RLSVTLVQ 272 (517) Q Consensus 199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~-~~~d~~---~la~~l~~ 272 (517) +|.+|++.+.+++. |.| =+.|.-. ...-.|||||++|-.+.+.-.-.. ...... .++..++. T Consensus 47 -----~f~~E~~~l~~l~H-----pnI--V~~~g~~~~~~~~~iv~Ey~~~G~L~~~l~~~~~~~l~~~~~~~i~~qia~ 114 (261) T cd05034 47 -----AFLEEAQIMKKLRH-----DKL--VQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAE 114 (261) T ss_pred -----HHHHHHHHHHHCCC-----CCE--EEEEEEEEECCEEEEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHH T ss_conf -----99999999986899-----798--559999988998999997589988899972188888999999999999999 Q ss_pred HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 999989744866178786228980289535743403121698 Q gi|254780623|r 273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) + +.-+-..|+.|.|.-|.||+++.++.+-+-|||+...+.. T Consensus 115 g-l~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFGls~~~~~ 155 (261) T cd05034 115 G-MAYLESRNYIHRDLAARNVLVGENLVCKVADFGLARLIED 155 (261) T ss_pred H-HHHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCEECCC T ss_conf 9-9999869957543272758988999799972787557578 No 142 >cd05631 STKc_GRK4 STKc_GRK4: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as Probab=98.70 E-value=2e-08 Score=84.47 Aligned_cols=144 Identities=18% Similarity=0.254 Sum_probs=88.6 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|++||-|+||+|+-+. +|+.||+|+....-- .. .+ .+.- T Consensus 6 k~lG~G~fg~V~~~~~~~--tg~~~AiK~i~~~~~-----------------~~--------------~~------~~~~ 46 (285) T cd05631 6 RVLGKGGFGEVCACQVRA--TGKMYACKKLEKKRI-----------------KK--------------RK------GEAM 46 (285) T ss_pred EEECCCCCEEEEEEEECC--CCCEEEEEEECHHHH-----------------CC--------------HH------HHHH T ss_conf 895038182999999989--997999999837881-----------------02--------------57------8999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHH-HHHHHCCCHHH---HHHHHHHHHHHHH Q ss_conf 5999988987202446776643000010221783--3530024786324267-73320022568---9999999999989 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTE-KLRACGHDLER---LSVTLVQSFLLHT 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~-~l~~~~~d~~~---la~~l~~~~~~qi 278 (517) ..+|.+.+.++.. + .|.+.+..+.+++ .+||||++|-.+.+.- .....+.+-.. .+..++.+ +.-+ T Consensus 47 ~~~E~~il~~~~h-----~--~iv~l~~~~~~~~~~~lv~e~~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~a-l~yl 118 (285) T cd05631 47 ALNEKRILEKVNS-----R--FVVSLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCG-LEDL 118 (285) T ss_pred HHHHHHHHHHCCC-----C--CCCEEEEEEEECCEEEEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHH-HHHH T ss_conf 9999999987699-----8--888599999979999999996579858999986389999999999999999999-9999 Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 7448661787862289802895357434031216989 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) -..|+.|-|.-|.||+++.+|.+-+.|||+...+++. T Consensus 119 H~~~IiHRDlKPeNILl~~~~~iKl~DFGla~~~~~~ 155 (285) T cd05631 119 QRERIVYRDLKPENILLDDRGHIRISDLGLAVQIPEG 155 (285) T ss_pred HHCCCCCCCCCCCCCCCCCCCCEEEEECCCEEECCCC T ss_conf 9779757766865656578996899765845887899 No 143 >cd07876 STKc_JNK2 The catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes Probab=98.69 E-value=3.4e-08 Score=82.70 Aligned_cols=151 Identities=19% Similarity=0.219 Sum_probs=84.7 Q ss_pred HHHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH Q ss_conf 999867--666778888655550212888723687640310468877778899987532114685433469179999999 Q gi|254780623|r 119 LYCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALE 196 (517) Q Consensus 119 ~F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~ 196 (517) +...|+ +.|+.||-|.||+|+=+. +|+.||||+.+....+ +... T Consensus 19 vl~rY~i~~~IG~G~fG~V~~a~d~~--tg~~VAIK~i~~~~~~--------------------------------~~~~ 64 (359) T cd07876 19 VLKRYQQLKPIGSGAQGIVCAAFDTV--LGINVAVKKLSRPFQN--------------------------------QTHA 64 (359) T ss_pred HHHCEEEEEEEECCCCEEEEEEEECC--CCCEEEEEEECCHHCC--------------------------------HHHH T ss_conf 13363881597215086999999889--9989999998910149--------------------------------7999 Q ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHH---HHHHHHHH Q ss_conf 887888655999988987202-44677664300001022178335300247863242677332002256---89999999 Q gi|254780623|r 197 QVTKMEMDLRLEAAAFSEMAE-NTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLE---RLSVTLVQ 272 (517) Q Consensus 197 ~~l~~ElD~~~Ea~n~~~~~~-~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~l~~ 272 (517) ..+. +|...+..+.. |.-..-++..|.-..+.-..-.+||||++|. +.+.- ....+.. .++..++. T Consensus 65 ~~~~------rEi~il~~l~HpnIv~l~~~f~~~~~~~~~~~~ylvmE~~~~~-L~~~i---~~~l~~~~~~~i~~qil~ 134 (359) T cd07876 65 KRAY------RELVLLKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMDAN-LCQVI---HMELDHERMSYLLYQMLC 134 (359) T ss_pred HHHH------HHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCC-HHHHH---HCCCCHHHHHHHHHHHHH T ss_conf 9999------9999998679969882899994167421266079999607998-89998---526999999999999999 Q ss_pred HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 999989744866178786228980289535743403121698 Q gi|254780623|r 273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) + ++-+-..|+.|-|.-|.||+++.+|.+-+.|||+....+. T Consensus 135 g-L~ylH~~gIiHRDIKP~NILl~~~g~iKL~DFGlAr~~~~ 175 (359) T cd07876 135 G-IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTACT 175 (359) T ss_pred H-HHHHHHCCEEECCCCHHHEEECCCCCEEECCCCCCCCCCC T ss_conf 9-9999868923057866876987899776235340301367 No 144 >cd05598 STKc_LATS STKc_LATS: Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Probab=98.69 E-value=3e-08 Score=83.11 Aligned_cols=142 Identities=23% Similarity=0.339 Sum_probs=86.1 Q ss_pred HHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 867--666778888655550212888723687640310468877778899987532114685433469179999999887 Q gi|254780623|r 122 EFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT 199 (517) Q Consensus 122 ~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 199 (517) .|+ +.|++|+-|.||+|+-++ +|+.||+|+.+.. + +..+ +-...+ T Consensus 2 ~fe~ik~iG~G~fG~V~la~~~~--t~~~~AiK~i~k~-------~---------~~~~---------------~~~~~~ 48 (376) T cd05598 2 MFVKIKTIGIGAFGEVCLVRKVD--TNALYAMKTLRKA-------D---------VLMR---------------NQAAHV 48 (376) T ss_pred CCEEEEEEECCCCEEEEEEEECC--CCCEEEEEEECHH-------H---------CCCH---------------HHHHHH T ss_conf 67698798238881999999899--9989999998268-------8---------0276---------------799999 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHH----HHHHHH Q ss_conf 888655999988987202446776643000010221783--35300247863242677332002256899----999999 Q gi|254780623|r 200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLS----VTLVQS 273 (517) Q Consensus 200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la----~~l~~~ 273 (517) ..|. .-+... +.|. |.+.|..+.++. .|||||++|-.+.+. +...+.-....+ ..++.+ T Consensus 49 ~~E~------~il~~~-----~hp~--Iv~l~~~f~~~~~lylvmEy~~gGdL~~~--l~~~~~~~e~~a~~~~~qi~~a 113 (376) T cd05598 49 KAER------DILAEA-----DNEW--VVKLYYSFQDKDNLYFVMDYIPGGDMMSL--LIRLGIFEEDLARFYIAELTCA 113 (376) T ss_pred HHHH------HHHHHC-----CCCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH T ss_conf 9999------999868-----9998--89499999989999999964799708999--9873999999999999999999 Q ss_pred HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC Q ss_conf 999897448661787862289802895357434031216 Q gi|254780623|r 274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL 312 (517) Q Consensus 274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l 312 (517) +.-+-..|+.|-|.-|.||+++.+|.+-+.|||++..+ T Consensus 114 -L~ylH~~giiHRDlKPeNILl~~~g~iKL~DFGla~~~ 151 (376) T cd05598 114 -IESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGF 151 (376) T ss_pred -HHHHHHCCEEECCCCHHEEEECCCCCEEEEECCCCCCC T ss_conf -99997376776555500168889998899725886444 No 145 >cd05629 STKc_NDR_like_fungal STKc_NDR_like_fungal: Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of Ace2p activity and cellular morphogenesis) network. CBK1 and Orb6 play s Probab=98.69 E-value=6e-08 Score=80.79 Aligned_cols=137 Identities=18% Similarity=0.288 Sum_probs=85.3 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.|+-|.||+|+-++ +|+.||||+.+..- + .. .. -...+ T Consensus 7 k~lG~G~fG~V~~a~~~~--tg~~~AiK~i~k~~----------------~----------~~-~~----~~~~~----- 48 (377) T cd05629 7 KVIGKGAFGEVRLVQKKD--TGKIYAMKTLLKSE----------------M----------FK-KD----QLAHV----- 48 (377) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHH----------------C----------CC-HH----HHHHH----- T ss_conf 782228583999999889--99899999984688----------------0----------58-89----99999----- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH----- Q ss_conf 5999988987202446776643000010221783--353002478632426773320022568999999999998----- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH----- 277 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q----- 277 (517) ..|..-+... +.|. |.+.|..+.+.+ .|||||++|-.+.+. +...+. +.+..+..|+.| T Consensus 49 -~~E~~il~~~-----~hp~--Iv~l~~~f~~~~~~ylvmEy~~ggdL~~~--l~~~~~----~~e~~~~~~~~qi~~al 114 (377) T cd05629 49 -KAERDVLAES-----DSPW--VVSLYYSFQDAQYLYLIMEFLPGGDLMTM--LIKYDT----FSEDVTRFYMAECVLAI 114 (377) T ss_pred -HHHHHHHHHC-----CCCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCC----CCHHHHHHHHHHHHHHH T ss_conf -9999999868-----9998--79499999989999999958999748899--986499----99999999999999999 Q ss_pred --HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf --974486617878622898028953574340312169 Q gi|254780623|r 278 --TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 278 --i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) +-..|+.|-|.-|.||+++.+|.+-+.|||+...+. T Consensus 115 ~~lH~~giiHRDlKPeNILl~~~g~iKL~DFGls~~~~ 152 (377) T cd05629 115 EAVHKLGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFH 152 (377) T ss_pred HHHHHCEEEECCCCCCEEEECCCCCEEECCCCCCCCCC T ss_conf 99874728964576555898799988981266763433 No 146 >cd07848 STKc_CDKL5 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5 subfamily. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations a Probab=98.69 E-value=3.7e-08 Score=82.43 Aligned_cols=144 Identities=15% Similarity=0.241 Sum_probs=85.4 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-|+.||-|+||+|+-+. +|+.||||+.+..-. -++....+.+|+ T Consensus 7 ~~iG~G~fg~V~~~~~~~--t~~~vAiK~i~~~~~--------------------------------~~~~~~~~~rEi- 51 (287) T cd07848 7 GVVGEGAYGVVLKCRHKE--TKEIVAIKKFKDSEE--------------------------------NEEVKETTLREL- 51 (287) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCC--------------------------------CHHHHHHHHHHH- T ss_conf 796417486999999889--998999999874005--------------------------------979999999999- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHC Q ss_conf 599998898720244677664300001022178335300247863242677332002256---89999999999989744 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLE---RLSVTLVQSFLLHTLRD 281 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~l~~~~~~qi~~~ 281 (517) +-+..+.. ..-|..=.+|. ..+.-.|||||++|-.+..+.... .+.... .+...++.+ +.-+-.. T Consensus 52 -----~il~~l~h----~nIv~l~~~f~-~~~~~~lVmE~~~~~ll~~~~~~~-~~~~~~~i~~~~~qil~a-l~ylH~~ 119 (287) T cd07848 52 -----KMLRTLKQ----ENIVELKEAFR-RRGKLYLVFEYVEKNMLELLEEMP-NGVPPEKVRSYIYQLIKA-IHWCHKN 119 (287) T ss_pred -----HHHHHCCC----CCCCEEEEEEE-ECCEEEEEEECCCCCHHHHHHHCC-CCCCHHHHHHHHHHHHHH-HHHHHHC T ss_conf -----99986799----89873989999-899999999758998199998644-899999999999999999-9999988 Q ss_pred CEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 8661787862289802895357434031216989 Q gi|254780623|r 282 GFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 282 GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) |+.|-|.-|.||+++.+|.+-+.|||+...+++. T Consensus 120 ~IiHRDiKPeNILl~~~~~iKl~DFG~a~~~~~~ 153 (287) T cd07848 120 DIVHRDIKPENLLISHNDVLKLCDFGFARNLSEG 153 (287) T ss_pred CCCCCCCCHHHEEECCCCCEEEECCCCCEECCCC T ss_conf 9240567789978888998898137644464677 No 147 >cd05632 STKc_GRK5 STKc_GRK5: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids Probab=98.69 E-value=8.1e-08 Score=79.74 Aligned_cols=145 Identities=19% Similarity=0.280 Sum_probs=88.0 Q ss_pred HH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 67--6667788886555502128887236876403104688777788999875321146854334691799999998878 Q gi|254780623|r 123 FD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTK 200 (517) Q Consensus 123 fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~ 200 (517) |+ +.|++|+-|+||+|+-+. +|+.||||+....- . .. .+.... T Consensus 2 f~~~k~LG~G~fg~V~~~~~~~--tg~~~AiK~i~k~~----------------~-~~--------------~~~~~~-- 46 (285) T cd05632 2 FRQYRVLGKGGFGEVCACQVRA--TGKMYACKKLEKKR----------------I-KK--------------RKGESM-- 46 (285) T ss_pred CEEEEEEECCCCEEEEEEEECC--CCCEEEEEEEEHHH----------------H-CC--------------HHHHHH-- T ss_conf 5662896028290999999999--99799999981788----------------0-13--------------577999-- Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHH-HHHHHCCCHHH---HHHHHHHHH Q ss_conf 88655999988987202446776643000010221783--3530024786324267-73320022568---999999999 Q gi|254780623|r 201 MEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTE-KLRACGHDLER---LSVTLVQSF 274 (517) Q Consensus 201 ~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~-~l~~~~~d~~~---la~~l~~~~ 274 (517) ..+|.+.++++.. +. |.+.|..+.+++ .+||||++|-.+.+.- .....+.+-.. ++..++.+ T Consensus 47 ----~~~E~~il~~l~h-----~~--iv~l~~~~~~~~~~~lv~E~~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~a- 114 (285) T cd05632 47 ----ALNEKQILEKVNS-----RF--VVSLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFEEERVLFYAAEICCG- 114 (285) T ss_pred ----HHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHH- T ss_conf ----9999999987699-----88--88498999979989999996379848999996289999999999999999999- Q ss_pred HHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 9989744866178786228980289535743403121698 Q gi|254780623|r 275 LLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 275 ~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) +.-+-..|+.|-|.-|.||+++.+|.+-+.|||+...+++ T Consensus 115 L~ylH~~~IiHRDlKPeNILl~~~g~iKl~DFGla~~~~~ 154 (285) T cd05632 115 LEDLHRENIVYRDLKPENILLDDYGHIRISDLGLAIKIPE 154 (285) T ss_pred HHHHHHCCCCCCCCCHHHHCCCCCCEEEEEECCCEEECCC T ss_conf 9999888875167886660534798189965574278479 No 148 >cd06610 STKc_OSR1_SPAK Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WN Probab=98.68 E-value=3.4e-08 Score=82.64 Aligned_cols=139 Identities=24% Similarity=0.288 Sum_probs=89.0 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|++|+-|.||+|+-+. +|+.||||+.... . .+ +-+ + . T Consensus 7 ~~iG~G~fg~Vy~a~~~~--~~~~vAiK~i~~~--------------------~-~~--------~~~--------~--~ 45 (266) T cd06610 7 EVIGSGATAVVQRAICLP--NGEKVAIKRIDLE--------------------K-CQ--------TSM--------D--E 45 (266) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEEHH--------------------H-CH--------HHH--------H--H T ss_conf 697227484999999989--9989999998779--------------------8-94--------899--------9--9 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH---- Q ss_conf 599998898720244677664300001022178--33530024786324267733200225689999999999989---- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT---- 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi---- 278 (517) +.+|++.+.+++. |. |-+.|..+.++ -.+||||++|-.+.+.-..... ...+-+..+..++.|+ T Consensus 46 ~~~E~~~l~~l~H-----pn--Iv~~~~~~~~~~~~~ivmE~~~~g~L~~~~~~~~~---~~~~~e~~~~~~~~qi~~al 115 (266) T cd06610 46 LRKEIQAMSLCHH-----PN--VVKYYTSFVVGDELWVVMPLMSGGSCLDIMKYSYP---QGGLDEAIIATILKEVLKGL 115 (266) T ss_pred HHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHHHHHHCC---CCCCCHHHHHHHHHHHHHHH T ss_conf 9999999986799-----89--89199999989999999967689979999986264---79999999999999999999 Q ss_pred ---HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf ---744866178786228980289535743403121698 Q gi|254780623|r 279 ---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 279 ---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) -..|+.|-|.-|.||+++.+|.+-+.|||+...+.. T Consensus 116 ~ylH~~~iiHRDiKP~NILl~~~~~vKl~DFGla~~l~~ 154 (266) T cd06610 116 EYLHKNGQIHRDIKAGNILLDSDGSVKLADFGVSASLAD 154 (266) T ss_pred HHHHHCCCCCCCCCHHHEEECCCCCEEEECCCCCEECCC T ss_conf 999978932266666667997999999966876346357 No 149 >cd05052 PTKc_Abl Catalytic Domain of the Protein Tyrosine Kinase, Abelson kinase. Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays Probab=98.68 E-value=7.5e-08 Score=80.02 Aligned_cols=143 Identities=16% Similarity=0.181 Sum_probs=92.5 Q ss_pred HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 99867--6667788886555502128887236876403104688777788999875321146854334691799999998 Q gi|254780623|r 120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ 197 (517) Q Consensus 120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 197 (517) +++|+ +.|+.|+-|+||+|+.+. +|+.||||+.+.+- .+ .+ T Consensus 5 ~~d~~~~~~iG~G~fG~Vyk~~~~~--~~~~VAvK~~~~~~---------------------------~~----~~---- 47 (263) T cd05052 5 RTDITMKHKLGGGQYGEVYEGVWKK--YSLTVAVKTLKEDT---------------------------ME----VE---- 47 (263) T ss_pred HHHEEEEEEEEECCCCEEEEEEECC--CCEEEEEEEECCCC---------------------------CC----HH---- T ss_conf 7993874598407882999999889--99499999988875---------------------------61----99---- Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHH-HHHCCCH---HHHHHHHH Q ss_conf 87888655999988987202446776643000010221--783353002478632426773-3200225---68999999 Q gi|254780623|r 198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKL-RACGHDL---ERLSVTLV 271 (517) Q Consensus 198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l-~~~~~d~---~~la~~l~ 271 (517) +|.+|++.+.+++. |.| -+.|.-+. ..-.|||||++|-++.+.-.- .....+. ..+|..++ T Consensus 48 ------~~~~Ei~il~~l~H-----pnI--v~~~g~~~~~~~~~iv~Ey~~~G~L~~~l~~~~~~~~~~~~~~~ia~qia 114 (263) T cd05052 48 ------EFLKEAAVMKEIKH-----PNL--VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQIS 114 (263) T ss_pred ------HHHHHHHHHHHCCC-----CCC--CCEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH T ss_conf ------99999999985799-----999--85889994699899999827999089999756988899999999999999 Q ss_pred HHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf 999998974486617878622898028953574340312169 Q gi|254780623|r 272 QSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 272 ~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) .+ +.-+-..|+.|.|.-|.||+++.++.+-+-|||+...++ T Consensus 115 ~g-l~yLH~~~iiHrDLK~~NiLl~~~~~vKl~DFGls~~~~ 155 (263) T cd05052 115 SA-MEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMT 155 (263) T ss_pred HH-HHHHHHCCCCCCCCCCCCEEECCCCCEEEEECCCCEECC T ss_conf 99-999965895357566020567799949998667655657 No 150 >cd05605 STKc_GRK4_like STKc_GRK4_like: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology ( Probab=98.68 E-value=1.5e-07 Score=77.70 Aligned_cols=144 Identities=15% Similarity=0.204 Sum_probs=86.5 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-|+.||-|+||+|+-+. +|+.||+|+....- +. +. +.... T Consensus 6 ~~lG~G~fg~V~~~~~~~--t~~~~AiK~i~k~~---~~-------------~~---------------~~~~~------ 46 (285) T cd05605 6 RVLGKGGFGEVCACQVRA--TGKMYACKKLEKKR---IK-------------KR---------------KGEAM------ 46 (285) T ss_pred EEECCCCCEEEEEEEECC--CCCEEEEEEEEHHH---HC-------------CH---------------HHHHH------ T ss_conf 996138082999999999--99899999983788---20-------------05---------------78999------ Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHH-HHHHHHCCCHH---HHHHHHHHHHHHHH Q ss_conf 599998898720244677664300001022178--3353002478632426-77332002256---89999999999989 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDT-EKLRACGHDLE---RLSVTLVQSFLLHT 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~-~~l~~~~~d~~---~la~~l~~~~~~qi 278 (517) ..+|.+.++++.. +. |.+.|..+.++ -.+||||++|-.+... ......+.+-. .++..++.+ +.-+ T Consensus 47 ~~~E~~il~~l~h-----p~--Iv~l~~~~~~~~~~~lvmE~~~gGdL~~~i~~~~~~~l~e~~~~~~~~qil~a-l~yl 118 (285) T cd05605 47 ALNEKQILEKINS-----PF--VVSLAYAYETKDALCLVLTLMNGGDLKFHIYNMGNPGFEEERAVFYAAEITCG-LEHL 118 (285) T ss_pred HHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHH T ss_conf 9999999987799-----98--99398999979989999996479848999997278999999999999999999-9999 Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 7448661787862289802895357434031216989 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) -..|+.|-|.-|.||+++.+|.+-+.|||+...++.. T Consensus 119 H~~~IiHRDlKPeNiLl~~~g~vKl~DFGla~~~~~~ 155 (285) T cd05605 119 HRERIVYRDLKPENILLDDYGHVRISDLGLAVEIPEG 155 (285) T ss_pred HHCCEEECCCCCCCCCCCCCCCEEEEECCCEEECCCC T ss_conf 8789265525732101226894898145712786799 No 151 >cd05586 STKc_Sck1_like STKc_Sck1_like: Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Probab=98.68 E-value=1.1e-07 Score=78.62 Aligned_cols=135 Identities=17% Similarity=0.212 Sum_probs=79.9 Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67788886555502128887236876403104688777788999875321146854334691799999998878886559 Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR 206 (517) Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~ 206 (517) |+.||-|.||+|+-++ +|+.||+|+.+..- +. +- ++.. .. . T Consensus 1 IG~G~fG~V~~a~~~~--tg~~~AiK~i~k~~----------------~~----------~~----~~~~-~~------~ 41 (330) T cd05586 1 IGKGTFGQVYQVRKKD--TRRIYAMKVLSKKE----------------IV----------AK----KEVA-HT------I 41 (330) T ss_pred CCCCCCEEEEEEEECC--CCCEEEEEEEEHHH----------------HH----------CH----HHHH-HH------H T ss_conf 9668264999999889--99899999984788----------------00----------65----8899-99------9 Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH------- Q ss_conf 9998898720244677664300001022178--3353002478632426773320022568999999999998------- Q gi|254780623|r 207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH------- 277 (517) Q Consensus 207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q------- 277 (517) .|.+-+.+. ...+.|.| -+.+..+.++ -.+||||++|-.+.+. +...+. +.+.-+..|+.| T Consensus 42 ~E~~il~~~--~~~~~p~I--v~l~~~f~~~~~lylVmEy~~gGdL~~~--l~~~~~----l~e~~~~~~~~qi~~aL~y 111 (330) T cd05586 42 GERNILVRT--LLDESPFI--VGLKFSFQTDSDLYLVTDYMSGGELFWH--LQKEGR----FSEDRAKFYIAELVLALEH 111 (330) T ss_pred HHHHHHHHH--HHCCCCCE--EEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCC----CCHHHHHHHHHHHHHHHHH T ss_conf 999999998--51599838--5899999989999999957899888999--987599----9999999999999999999 Q ss_pred HHHCCEECCCCCCCEEEEECCCCEEEEECCHHE Q ss_conf 974486617878622898028953574340312 Q gi|254780623|r 278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITG 310 (517) Q Consensus 278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg 310 (517) +-..|+.|-|.-|.||+++.+|.+.+.|||+.. T Consensus 112 LH~~gIiHRDLKPeNILl~~~g~iKL~DFGlak 144 (330) T cd05586 112 LHKYDIVYRDLKPENILLDATGHIALCDFGLSK 144 (330) T ss_pred HHHCCCEECCCCCCCCCCCCCCCEEECCCCCCC T ss_conf 998893340327654111578974322334001 No 152 >cd06646 STKc_MAP4K5 Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MA Probab=98.68 E-value=4.8e-08 Score=81.52 Aligned_cols=141 Identities=18% Similarity=0.190 Sum_probs=88.0 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.||+||-|+||+|.-.. +|+.||||+.+..- . +++. . T Consensus 15 ~~iG~G~fg~Vy~a~~~~--~~~~vAiK~i~~~~----------------------~-----------~~~~-~------ 52 (267) T cd06646 15 QRVGSGTYGDVYKARNLH--TGELAAVKIIKLEP----------------------G-----------DDFS-L------ 52 (267) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEECCC----------------------C-----------CHHH-H------ T ss_conf 898227684999999889--99799999981575----------------------1-----------4389-9------ Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHC-CCHH---HHHHHHHHHHHHHHHH Q ss_conf 59999889872024467766430000102217833530024786324267733200-2256---8999999999998974 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACG-HDLE---RLSVTLVQSFLLHTLR 280 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~-~d~~---~la~~l~~~~~~qi~~ 280 (517) +.+|...+.+++. ..-|.+-.+|.+ ...-.+||||++|-.+.+.- ...+ .+-. .++..++.+ +.-+-. T Consensus 53 ~~~Ei~il~~l~H----pnIv~~~~~~~~-~~~~~lvmEy~~~g~L~~~l--~~~~~~~e~~i~~i~~qil~a-l~ylH~ 124 (267) T cd06646 53 IQQEIFMVKECKH----CNIVAYFGSYLS-REKLWICMEYCGGGSLQDIY--HVTGPLSELQIAYVCRETLQG-LAYLHS 124 (267) T ss_pred HHHHHHHHHHCCC----CCEEEEEEEEEE-CCEEEEEEEECCCCCHHHHH--HHCCCCCHHHHHHHHHHHHHH-HHHHHH T ss_conf 9999999986899----998289899988-99889999814899699999--863999999999999999999-999998 Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 48661787862289802895357434031216989 Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) .|+.|-|.-|.||+++.+|.+-+.|||+...++.. T Consensus 125 ~~ivHRDlKp~NILl~~~~~vKl~DFGla~~~~~~ 159 (267) T cd06646 125 KGKMHRDIKGANILLTDNGDVKLADFGVAAKITAT 159 (267) T ss_pred CCCEEECCCCHHEEECCCCCEEEECCCCCEECCCC T ss_conf 79874016703179979999999448686463687 No 153 >cd05110 PTKc_HER4 Catalytic Domain of the Protein Tyrosine Kinase, HER4. Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin Probab=98.68 E-value=1.7e-07 Score=77.18 Aligned_cols=145 Identities=14% Similarity=0.148 Sum_probs=87.4 Q ss_pred HHH--HHHHHHHHHHHHHHHEECCCCCCE----EEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH Q ss_conf 867--666778888655550212888723----68764031046887777889998753211468543346917999999 Q gi|254780623|r 122 EFD--DPIAAASIAQVHPAVVHDINGYRK----VAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL 195 (517) Q Consensus 122 ~fd--ePlasASiaQVh~A~l~d~~~g~~----VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 195 (517) +|+ +.|++|+-|.||+|+... .|+. ||||+.++.... T Consensus 8 dl~~~k~LG~G~FG~Vy~a~~~~--~g~~~~~~vAvK~l~~~~~~----------------------------------- 50 (303) T cd05110 8 ELKRVKVLGSGAFGTVYKGIWVP--EGETVKIPVAIKILNETTGP----------------------------------- 50 (303) T ss_pred HCEEEEEEEECCCCEEEEEEEEC--CCCEEEEEEEEEEECCCCCH----------------------------------- T ss_conf 99882598207894999589908--99888789999997744487----------------------------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCH-HCCCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHH Q ss_conf 98878886559999889872024467766430000102-21783353002478632426773320022568---999999 Q gi|254780623|r 196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWN-RTERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLV 271 (517) Q Consensus 196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~-~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~ 271 (517) ..+.+|.+|+..+..++. |.| -+.|.- .+..-.+||||++|-.+.+.-.-......... ++..++ T Consensus 51 ----~~~~~f~~E~~il~~l~H-----pnI--V~l~g~~~~~~~~lV~E~~~~G~L~~~l~~~~~~l~~~~~~~~~~qia 119 (303) T cd05110 51 ----KANVEFMDEALIMASMDH-----PHL--VRLLGVCLSPTIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIA 119 (303) T ss_pred ----HHHHHHHHHHHHHHHCCC-----CCC--CCEEEEEEECCEEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHH T ss_conf ----899999999999986899-----898--919899985885999997689878887775168889999999999999 Q ss_pred HHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 99999897448661787862289802895357434031216989 Q gi|254780623|r 272 QSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 272 ~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) .+ +.-+-..|+.|.|.-|+||+++.+|.+-+.|||+...+... T Consensus 120 ~g-l~yLH~~~IiHRDLKp~NILl~~~~~vKI~DFGlar~~~~~ 162 (303) T cd05110 120 KG-MMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGD 162 (303) T ss_pred HH-HHHHHHCCCCCCCCCCCCEEECCCCCEEECCCCCCEECCCC T ss_conf 99-99996689534665310479889998898126452555799 No 154 >COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms] Probab=98.68 E-value=8.7e-08 Score=79.51 Aligned_cols=97 Identities=25% Similarity=0.358 Sum_probs=70.6 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEE Q ss_conf 59999889872024467766430000102217833530024786324267733200225689999999999989744866 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFF 284 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfF 284 (517) -.+||+.+.+.++. .|.+|.||.=......||||||+|..+.|.-... +..+++.+-.. .--+-..|+. T Consensus 46 t~~Earil~~a~~~-----GV~~P~v~dvD~~~~~I~me~I~G~~lkd~l~~~-----~~~~~r~vG~~-vg~lH~~giv 114 (204) T COG3642 46 TRREARILAKAREA-----GVPVPIVYDVDPDNGLIVMEYIEGELLKDALEEA-----RPDLLREVGRL-VGKLHKAGIV 114 (204) T ss_pred HHHHHHHHHHHHHC-----CCCCCEEEEECCCCCEEEEEEECCHHHHHHHHHC-----CHHHHHHHHHH-HHHHHHCCEE T ss_conf 89999999999976-----9998769997399877999985881689998721-----66899999999-9988756800 Q ss_pred CCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 178786228980289535743403121698 Q gi|254780623|r 285 HADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 285 HaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) |+||-+-||++. +++++|||||+-. .++ T Consensus 115 HGDLTtsNiIl~-~~~i~~IDfGLg~-~s~ 142 (204) T COG3642 115 HGDLTTSNIILS-GGRIYFIDFGLGE-FSD 142 (204) T ss_pred CCCCCCCEEEEE-CCCEEEEECCCCC-CCC T ss_conf 578861328983-8968999778432-456 No 155 >cd06630 STKc_MEKK1 Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regul Probab=98.68 E-value=8.3e-08 Score=79.68 Aligned_cols=141 Identities=18% Similarity=0.232 Sum_probs=86.6 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-|+.||-|.||+|.-. .+|+.||||+.+..-. .. .+-.+.+ -+ T Consensus 6 ~~iG~G~fg~Vy~~~~~--~~g~~~AiK~i~~~~~---------------------~~---~~~~~~~----------~~ 49 (268) T cd06630 6 QQLGTGAFSSCYQARDV--KTGTLMAVKQVTYVRN---------------------TS---SEQEEVV----------EA 49 (268) T ss_pred CEEECCCCCEEEEEEEC--CCCCEEEEEEECHHHC---------------------CH---HHHHHHH----------HH T ss_conf 38512748499999988--9998999999813216---------------------43---5549999----------99 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH---- Q ss_conf 599998898720244677664300001022--17833530024786324267733200225689999999999989---- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT---- 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi---- 278 (517) +.+|.+.+.++. .|.|. +.|..+ ...-.+||||++|-.+.+.- +..+. +-+..+..|++|+ T Consensus 50 ~~~Ei~il~~l~-----HpnIv--~~~~~~~~~~~~~ivmEy~~gg~L~~~l--~~~~~----~~e~~~~~~~~qi~~gl 116 (268) T cd06630 50 LRKEIRLMARLN-----HPHII--RMLGATCEDSHFNLFVEWMAGGSVSHLL--SKYGA----FKEAVIINYTEQLLRGL 116 (268) T ss_pred HHHHHHHHHHCC-----CCCEE--EEEEEEEECCEEEEEEECCCCCCHHHHH--HHCCC----CCHHHHHHHHHHHHHHH T ss_conf 999999998689-----99994--1247999899999999934989799999--87499----99999999999999999 Q ss_pred ---HHCCEECCCCCCCEEEEECCCC-EEEEECCHHEECCH Q ss_conf ---7448661787862289802895-35743403121698 Q gi|254780623|r 279 ---LRDGFFHADLHPGNLFVDSKGY-IVAVDMGITGRLSK 314 (517) Q Consensus 279 ---~~~GfFHaDPHpGNi~v~~dg~-i~~lDfG~vg~l~~ 314 (517) -..|+.|-|.-|.||+++.+|. +-+.|||....+.. T Consensus 117 ~ylH~~~IiHRDiKp~NiLl~~~g~~vKl~DFG~a~~~~~ 156 (268) T cd06630 117 SYLHENQIIHRDVKGANLLIDSTGQRLRIADFGAAARLAA 156 (268) T ss_pred HHHHHCCCEECCCCCCEEEEECCCCEEEEEECCCCCCCCC T ss_conf 9999789263346654499938999799987898703466 No 156 >cd05098 PTKc_FGFR1 Catalytic Domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to Probab=98.68 E-value=2.3e-07 Score=76.20 Aligned_cols=161 Identities=14% Similarity=0.164 Sum_probs=96.8 Q ss_pred HHHHC--CCCHHHHHHHHH--HHHHHHHHHHHHHHHEECCC-----CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 75404--788999999867--66677888865555021288-----8723687640310468877778899987532114 Q gi|254780623|r 108 VASAL--KAPIEELYCEFD--DPIAAASIAQVHPAVVHDIN-----GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEK 178 (517) Q Consensus 108 ie~el--g~~~~~~F~~fd--ePlasASiaQVh~A~l~d~~-----~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~ 178 (517) .|-|| ...|+--++.+. +.|+.||-|+||+|+....+ ...+||||+.+++..+ . T Consensus 3 ~~~~~p~~~~weI~~~~l~l~~~iG~G~FG~Vy~a~~~~~~~~~~~~~~~VAvK~l~~~~~~---~-------------- 65 (307) T cd05098 3 SEYELPEDPRWEVPRDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATE---K-------------- 65 (307) T ss_pred CCCCCCCCCCCCCCHHHEEECCEEECCCCEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCH---H-------------- T ss_conf 65679999877234899698469812667199999992677667870379999997876898---9-------------- Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHH Q ss_conf 68543346917999999988788865599998898720244677664300001022--1783353002478632426773 Q gi|254780623|r 179 LLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKL 256 (517) Q Consensus 179 ~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l 256 (517) ..-+|.+|++.+.++.+ .+.| =+.|... ...-.|||||++|-.+.+.-.. T Consensus 66 ----------------------~~~~~~~E~~~l~~l~~----H~nI--v~l~g~~~~~~~~~lV~Ey~~~GsL~~~L~~ 117 (307) T cd05098 66 ----------------------DLSDLISEMEMMKMIGK----HKNI--INLLGACTQDGPLYVIVEYASKGNLREYLRA 117 (307) T ss_pred ----------------------HHHHHHHHHHHHHHHCC----CCCE--EEEEEEEEECCEEEEEEEECCCCCHHHHHHH T ss_conf ----------------------99999999999985149----9987--0799999889988999980699999999986 Q ss_pred HH---------------HCCCHH---HHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 32---------------002256---89999999999989744866178786228980289535743403121698 Q gi|254780623|r 257 RA---------------CGHDLE---RLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 257 ~~---------------~~~d~~---~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) .. ...+.+ .++..++.. +.-+-..|+.|.|.-|.||+++.++.+-+-|||+...+.. T Consensus 118 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~g-l~yLH~~~iiHRDLK~~NILl~~~~~~Ki~DFGla~~~~~ 192 (307) T cd05098 118 RRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARG-MEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHH 192 (307) T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCC T ss_conf 27764211246554721237999999999999999-9999848996786670202076899789715022322566 No 157 >cd07870 STKc_PFTAIRE2 The catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase. Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal re Probab=98.68 E-value=9.5e-08 Score=79.22 Aligned_cols=133 Identities=17% Similarity=0.176 Sum_probs=79.5 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.||-|+||+|+-+. +|+.||||+....-.+. ..... T Consensus 11 ~~lG~G~fg~V~~a~~~~--tg~~vAiK~i~~~~~~~---------------------------------~~~~~----- 50 (291) T cd07870 11 EKLGEGSYATVYKGISRI--NGQLVALKVISMKTEEG---------------------------------VPFTA----- 50 (291) T ss_pred EEEECCCCCEEEEEEECC--CCCEEEEEEEEHHHCCC---------------------------------CHHHH----- T ss_conf 893137280999999889--99799999983200123---------------------------------07899----- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH---- Q ss_conf 59999889872024467766430000102217--833530024786324267733200225689999999999989---- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT---- 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi---- 278 (517) .+|.+.+..++ .+.|. +.|.-+.+ .-.+||||++|--..... -...+.+. .-+..|+.|+ T Consensus 51 -~rEi~il~~l~-----HpnIv--~l~~~~~~~~~~~lv~Ey~~~~l~~~~~-~~~~~l~~-----~~i~~~~~Qil~aL 116 (291) T cd07870 51 -IREASLLKGLK-----HANIV--LLHDIIHTKETLTFVFEYMHTDLAQYMI-QHPGGLHP-----YNVRLFMFQLLRGL 116 (291) T ss_pred -HHHHHHHHHCC-----CCCEE--EEEECCCCCCEEEEEEECCCCHHHHHHH-HCCCCCCH-----HHHHHHHHHHHHHH T ss_conf -99999998679-----99987--7831015786589999735724589999-66799999-----99999999999999 Q ss_pred ---HHCCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf ---744866178786228980289535743403121 Q gi|254780623|r 279 ---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 279 ---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) -..|+.|.|.-|.||+++.+|.+-+.|||+... T Consensus 117 ~ylH~~~IiHRDlKPeNILi~~~~~vKl~DFGla~~ 152 (291) T cd07870 117 AYIHGQHILHRDLKPQNLLISYLGELKLADFGLARA 152 (291) T ss_pred HHHHHCCCEECCCCHHHEEECCCCCEEEEEECCCCC T ss_conf 999878834144871325787899889987524302 No 158 >cd05086 PTKc_Aatyk2 Catalytic Domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage Probab=98.68 E-value=9.2e-08 Score=79.32 Aligned_cols=136 Identities=15% Similarity=0.191 Sum_probs=84.1 Q ss_pred HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 66778888655550212888723687640310468877778899987532114685433469179999999887888655 Q gi|254780623|r 126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL 205 (517) Q Consensus 126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~ 205 (517) =|++|+-|+||+|.+++++++..||||+.+++.... .+-+| T Consensus 2 kiG~G~fG~Vy~~~~~~~~~~~~~~vk~~~~~~~~~---------------------------------------~~~~f 42 (268) T cd05086 2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSK---------------------------------------EQNEF 42 (268) T ss_pred CCCCCCCCEEEEEEEECCCEEEEEEEEEECCCCCHH---------------------------------------HHHHH T ss_conf 084274849999999759816999999967878989---------------------------------------99999 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHCCCHHC---CCCEEEEECCCCCCCCHHHHHHHHCC---C---HHHHHHHHHHHHHH Q ss_conf 999988987202446776643000010221---78335300247863242677332002---2---56899999999999 Q gi|254780623|r 206 RLEAAAFSEMAENTVKDQGFRVPKIDWNRT---ERDVITMEWIDGVKISDTEKLRACGH---D---LERLSVTLVQSFLL 276 (517) Q Consensus 206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s---t~~VLvmE~i~G~~i~d~~~l~~~~~---d---~~~la~~l~~~~~~ 276 (517) .+|+..+..++ .|.|.- .|. .| .+-.|||||++|-++.+.-....... + ..+++..++. -+. T Consensus 43 ~~E~~~l~~l~-----HpnIv~--~~g-~~~~~~~~~iv~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~qia~-gl~ 113 (268) T cd05086 43 LQQGDPYRILQ-----HPNILQ--CLG-QCVEAIPYLLVFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAA-GVT 113 (268) T ss_pred HHHHHHHHHCC-----CCCCCE--EEE-EEEECCEEEEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHH-HHH T ss_conf 99999998389-----988863--989-998899889999846898489997417666674259999999999999-999 Q ss_pred HHHHCCEECCCCCCCEEEEECCCCEEEEECCHH Q ss_conf 897448661787862289802895357434031 Q gi|254780623|r 277 HTLRDGFFHADLHPGNLFVDSKGYIVAVDMGIT 309 (517) Q Consensus 277 qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~v 309 (517) -+-..|+.|.|.-|.||+++.++.+-+-|||+. T Consensus 114 yLH~~~ivHrDLK~~NiLl~~~~~~Ki~DFGla 146 (268) T cd05086 114 HMHKHNFLHSDLALRNCFLTSDLTVKVGDYGIG 146 (268) T ss_pred HHHHCCCCCCCCCCCEEEECCCCCEEEEECCCC T ss_conf 998689716777720189989997999877887 No 159 >cd05046 PTK_CCK4 Catalytic Domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4. Protein Tyrosine Kinase (PTK) family; Colon carcinoma kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is stil Probab=98.68 E-value=1.3e-07 Score=78.23 Aligned_cols=145 Identities=15% Similarity=0.206 Sum_probs=89.5 Q ss_pred HHHH--HHHHHHHHHHHHHHHEECC---CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH Q ss_conf 9867--6667788886555502128---8872368764031046887777889998753211468543346917999999 Q gi|254780623|r 121 CEFD--DPIAAASIAQVHPAVVHDI---NGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL 195 (517) Q Consensus 121 ~~fd--ePlasASiaQVh~A~l~d~---~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 195 (517) +.|+ +.|+.||-|+||+|+.+.. ...+.||||+..+.-. + T Consensus 5 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~---------------------------------~-- 49 (275) T cd05046 5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKD---------------------------------E-- 49 (275) T ss_pred HHCEEEEEEECCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCC---------------------------------H-- T ss_conf 99984249802888589999988886567858999998375678---------------------------------6-- Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHHH--------CCCH-- Q ss_conf 988788865599998898720244677664300001022--1783353002478632426773320--------0225-- Q gi|254780623|r 196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRAC--------GHDL-- 263 (517) Q Consensus 196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~~--------~~d~-- 263 (517) ....+|.+|++.+.+++. |.| -+.|.-. ...-.+||||++|-.+.+.-..... ..+. T Consensus 50 ----~~~~~~~~E~~~l~~l~H-----pnI--V~l~g~~~~~~~~~ivmEy~~~G~L~~~l~~~~~~~~~~~~~~l~~~~ 118 (275) T cd05046 50 ----NLQSEFRRELDMFRKLSH-----KNV--VRLLGLCREAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQ 118 (275) T ss_pred ----HHHHHHHHHHHHHHHCCC-----CCC--CCEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCHHH T ss_conf ----899999999999986899-----799--919999988994699995558984999998624554334578889999 Q ss_pred -HHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC Q ss_conf -6899999999999897448661787862289802895357434031216 Q gi|254780623|r 264 -ERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL 312 (517) Q Consensus 264 -~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l 312 (517) -.++..++.. +.-+-..|+.|.|.-|-||+++.++.+-+-|||+.... T Consensus 119 ~~~i~~qia~g-l~yLH~~~iiHrDLKp~NiLl~~~~~~Ki~DfGls~~~ 167 (275) T cd05046 119 KVALCTQIALG-MDHLSNARFVHRDLAARNCLVSSQREVKVSLLSLSKDV 167 (275) T ss_pred HHHHHHHHHHH-HHHHHCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCC T ss_conf 99999999999-99996199316754524089827996786002101025 No 160 >cd05090 PTKc_Ror1 Catalytic Domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like orphan receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly Probab=98.67 E-value=3.8e-08 Score=82.26 Aligned_cols=145 Identities=12% Similarity=0.206 Sum_probs=90.0 Q ss_pred HHHHHHHHHHHHHHHHHHEE--CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 86766677888865555021--2888723687640310468877778899987532114685433469179999999887 Q gi|254780623|r 122 EFDDPIAAASIAQVHPAVVH--DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT 199 (517) Q Consensus 122 ~fdePlasASiaQVh~A~l~--d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 199 (517) .|.++|+.||.|+||+|++. +.+.|+.||||+.++.-. + . T Consensus 8 ~~~~~IG~G~fG~Vykg~~~~~~~~~~~~VAiK~l~~~~~---------------------~--------~--------- 49 (283) T cd05090 8 RFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINN---------------------P--------Q--------- 49 (283) T ss_pred EEEEEEECCCCCEEEEEEEECCCCCCCEEEEEEEECCCCC---------------------H--------H--------- T ss_conf 9987970485869999999478885888999999788789---------------------7--------8--------- Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC---CCEEEEECCCCCCCCHHHHHHH----------------HC Q ss_conf 8886559999889872024467766430000102217---8335300247863242677332----------------00 Q gi|254780623|r 200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE---RDVITMEWIDGVKISDTEKLRA----------------CG 260 (517) Q Consensus 200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st---~~VLvmE~i~G~~i~d~~~l~~----------------~~ 260 (517) ..-+|.+|++-+.+++. |.|. +.|. .|+ +-.+||||++|-.+.+.-.... .. T Consensus 50 -~~~~f~~E~~~l~~l~H-----pNIV--~l~g-~~~~~~~~~iv~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~~ 120 (283) T cd05090 50 -QWGEFQQEASLMAELHH-----PNIV--CLLG-VVTQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSS 120 (283) T ss_pred -HHHHHHHHHHHHHHCCC-----CCCC--EEEE-EEEECCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC T ss_conf -99999999999986689-----8968--5999-9988997799999459990899997507654333332223321357 Q ss_pred CCH---HHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 225---689999999999989744866178786228980289535743403121698 Q gi|254780623|r 261 HDL---ERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 261 ~d~---~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) .+. -.++..++.+ +..+-..|+.|.|..|.||+++.++.+-+-|||+...+.. T Consensus 121 l~~~~~~~i~~qia~g-l~yLH~~~iiHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~ 176 (283) T cd05090 121 LDHGDFLHIAIQIAAG-MEYLSSHFFVHKDLAARNILIGEQLHVKISDLGLSREIYS 176 (283) T ss_pred CCHHHHHHHHHHHHHH-HHHHHHCCEECCCCCHHHEEECCCCCEEEEECCCCEECCC T ss_conf 8999999999999999-9998449856450484127688999899981667726567 No 161 >cd05606 STKc_beta_ARK STKc_beta_ARK: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely e Probab=98.67 E-value=4.3e-08 Score=81.87 Aligned_cols=140 Identities=16% Similarity=0.189 Sum_probs=83.9 Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67788886555502128887236876403104688777788999875321146854334691799999998878886559 Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR 206 (517) Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~ 206 (517) |+.|+-|+||+|+-++ +|+.||||+.... .+ . ..+-.....+| T Consensus 2 iG~G~fg~V~~~~~~~--t~~~~AiK~i~k~---~~------------------------~----~~~~~~~~~~e---- 44 (278) T cd05606 2 IGRGGFGEVYGCRKAD--TGKMYAMKCLDKK---RI------------------------K----MKQGETLALNE---- 44 (278) T ss_pred CCCCCCEEEEEEEECC--CCCEEEEEEECHH---HH------------------------H----HHHHHHHHHHH---- T ss_conf 8308271999999889--9989999998488---83------------------------0----45668999999---- Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH------ Q ss_conf 9998898720244677664300001022178--33530024786324267733200225689999999999989------ Q gi|254780623|r 207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT------ 278 (517) Q Consensus 207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi------ 278 (517) ..-+..... .+.|.| -+.+..+.++ -.+||||++|-.+.+. +...+ .+.+.-+..|+.|+ T Consensus 45 --~~~~~~~~~--~~~p~I--v~l~~~~~~~~~lylvmE~~~gG~L~~~--l~~~~----~~~e~~~~~~~~qil~aL~y 112 (278) T cd05606 45 --RIMLSLVST--GDCPFI--VCMTYAFHTPDKLCFILDLMNGGDLHYH--LSQHG----VFSEAEMRFYAAEIILGLEH 112 (278) T ss_pred --HHHHHHHHC--CCCCCE--EEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCC----CCCHHHHHHHHHHHHHHHHH T ss_conf --999999851--899978--7999999989999999984599869999--98759----99999999999999999999 Q ss_pred -HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf -7448661787862289802895357434031216989 Q gi|254780623|r 279 -LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 279 -~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) -..|+.|-|.-|.||+++.+|.+-+.|||+...++.. T Consensus 113 lH~~gIiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~ 150 (278) T cd05606 113 MHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK 150 (278) T ss_pred HHHCCCEECCCCCCCCCCCCCCCEEEEECCEEEECCCC T ss_conf 98789887235720024347897799755721664688 No 162 >cd06651 STKc_MEKK3 Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor Probab=98.67 E-value=4.2e-08 Score=81.97 Aligned_cols=141 Identities=21% Similarity=0.321 Sum_probs=86.6 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-|+.||-|.||+|+-.+ +|+.||||+.+-+ +.. .....++ -. T Consensus 8 ~~lG~G~fg~Vy~~~~~~--tg~~~AvK~i~~~-----------------------~~~-----~~~~~~~-------~~ 50 (266) T cd06651 8 KLLGQGAFGRVYLCYDVD--TGRELAAKQVQFD-----------------------PES-----PETSKEV-------SA 50 (266) T ss_pred CEEECCCCEEEEEEEECC--CCCEEEEEEEECC-----------------------CCC-----HHHHHHH-------HH T ss_conf 385127581999999889--9979999999536-----------------------354-----3669999-------99 Q ss_pred HHHHHHHHHHHHCCCCCCCC-CCCHHCCCHHCCC-CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH--- Q ss_conf 59999889872024467766-4300001022178-335300247863242677332002256899999999999897--- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQG-FRVPKIDWNRTER-DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL--- 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~st~-~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~--- 279 (517) +.+|.+.+.++.. |. |..=.++.+.+.. -.++|||++|-.+.+. ++..+ .+.+..+..|+.|++ T Consensus 51 ~~~Ei~~l~~l~H-----pnIv~~~~~~~~~~~~~l~ivmEy~~gg~L~~~--l~~~~----~l~e~~~~~~~~qil~aL 119 (266) T cd06651 51 LECEIQLLKNLQH-----ERIVQYYGCLRDRAEKTLTIFMEYMPGGSVKDQ--LKAYG----ALTESVTRKYTRQILEGM 119 (266) T ss_pred HHHHHHHHHHCCC-----CCEEEEEEEEEECCCCEEEEEEECCCCCCHHHH--HHHCC----CCCHHHHHHHHHHHHHHH T ss_conf 9999999985899-----997138999996899789999971195988999--98749----999999999999999999 Q ss_pred ----HCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf ----4486617878622898028953574340312169 Q gi|254780623|r 280 ----RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 280 ----~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) ..|+.|-|.-|.||+++.+|.+-+.|||+...++ T Consensus 120 ~ylH~~~IiHRDlKp~NIL~~~~~~vKl~DFG~a~~~~ 157 (266) T cd06651 120 SYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQ 157 (266) T ss_pred HHHHHCCEEECCCCHHHEEECCCCCEEECCCCCCCCCC T ss_conf 99986996524387899678789998984157311025 No 163 >cd05590 STKc_nPKC_eta STKc_nPKC_eta: Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro Probab=98.67 E-value=7.8e-08 Score=79.88 Aligned_cols=137 Identities=18% Similarity=0.211 Sum_probs=80.9 Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67788886555502128887236876403104688777788999875321146854334691799999998878886559 Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR 206 (517) Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~ 206 (517) |+.||-|+||+|+-+. +|+.||||+.+.... .+ .-+ ...+. T Consensus 3 LG~G~fG~V~~a~~~~--tg~~~AiK~i~k~~~----------------~~-------~~~--------~~~~~------ 43 (320) T cd05590 3 LGKGSFGKVMLARLKE--SGRLYAVKVLKKDVI----------------LQ-------DDD--------VECTM------ 43 (320) T ss_pred EEECCCCEEEEEEECC--CCCEEEEEEEEHHHC----------------CC-------HHH--------HHHHH------ T ss_conf 1118791999999999--998999999807884----------------38-------478--------99999------ Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHC-CCH---HHHHHHHHHHHHHHHHH Q ss_conf 9998898720244677664300001022178--33530024786324267733200-225---68999999999998974 Q gi|254780623|r 207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACG-HDL---ERLSVTLVQSFLLHTLR 280 (517) Q Consensus 207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~-~d~---~~la~~l~~~~~~qi~~ 280 (517) +|.+.+.... +.| .|.+.|..+.++ -.+||||++|-.+.+. +...+ .+- ..++..++.+ +.-+-. T Consensus 44 ~E~~il~~~~----~hp--~Iv~l~~~f~~~~~~ylvmEy~~gGdL~~~--l~~~~~l~e~~a~~~~~qi~~a-L~yLH~ 114 (320) T cd05590 44 TEKRILSLAR----NHP--FLTQLYCCFQTPDRLFFVMEFVNGGDLMFH--IQKSRRFDEARARFYAAEITSA-LMFLHD 114 (320) T ss_pred HHHHHHHHHC----CCC--CEEEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHHH T ss_conf 9999999727----999--786699999989999999976799879999--9743899999999999999999-999987 Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 4866178786228980289535743403121 Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) .|+.|-|.-|.||+++.+|.+-+.|||++.. T Consensus 115 ~gIiHRDLKPeNILl~~~g~iKL~DFGlak~ 145 (320) T cd05590 115 KGIIYRDLKLDNVLLDHEGHCKLADFGMCKE 145 (320) T ss_pred CCEEECCCCCCCCEECCCCCEEECCHHHHHH T ss_conf 8907622467534574689889704135343 No 164 >cd07851 STKc_p38 The catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and Probab=98.67 E-value=1.9e-07 Score=76.96 Aligned_cols=142 Identities=16% Similarity=0.209 Sum_probs=80.8 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|++||-|+||+|+-+. +|+.||||+.+...... +....+ T Consensus 21 ~~IG~G~fg~Vy~a~~~~--t~~~vAiK~i~~~~~~~--------------------------------~~~~~~----- 61 (343) T cd07851 21 SPVGSGAYGQVCSAFDTK--TGRKVAIKKLSRPFQSA--------------------------------IHAKRT----- 61 (343) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHCCH--------------------------------HHHHHH----- T ss_conf 698317294999999889--99899999988222497--------------------------------999999----- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCC-----HHCCCCEEEEECCCCCCCCHHHHHHHHCCCH---HHHHHHHHHHHHH Q ss_conf 5999988987202446776643000010-----2217833530024786324267733200225---6899999999999 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDW-----NRTERDVITMEWIDGVKISDTEKLRACGHDL---ERLSVTLVQSFLL 276 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~-----~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~---~~la~~l~~~~~~ 276 (517) .+|.+.+..+.. ..-|.+-.+|. +-...-.+||||+. ..+.+.- +...... +.++..++.+ +. T Consensus 62 -~rEi~il~~l~H----pnIv~l~d~f~~~~~~~~~~~~yiv~e~~~-~~L~~~i--~~~~l~~~~i~~i~~qil~a-L~ 132 (343) T cd07851 62 -YRELRLLKHMDH----ENVIGLLDVFTPASSLEDFQDVYLVTHLMG-ADLNNIV--KCQKLSDDHIQFLVYQILRG-LK 132 (343) T ss_pred -HHHHHHHHHCCC----CCCCEEEEEEECCCCCCCCCEEEEEECCCC-CCHHHHH--HHCCCCHHHHHHHHHHHHHH-HH T ss_conf -999999997579----995417888831776555765899974789-7899999--70899999999999999999-99 Q ss_pred HHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 89744866178786228980289535743403121698 Q gi|254780623|r 277 HTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 277 qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) -+-..|+.|.|.-|+||+++.++.+-++|||+....+. T Consensus 133 ylH~~~IiHRDlKPeNILl~~~~~vKI~DFGlA~~~~~ 170 (343) T cd07851 133 YIHSAGIIHRDLKPSNIAVNEDCELKILDFGLARHTDD 170 (343) T ss_pred HHHHCCCEECCCCHHHEEECCCCCEEECCCCCCEECCC T ss_conf 99878763376863655886889788714767623477 No 165 >cd07834 STKc_MAPK The catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylat Probab=98.67 E-value=1.4e-08 Score=85.75 Aligned_cols=138 Identities=22% Similarity=0.263 Sum_probs=79.7 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|++||-|+||+|+-+. +|+.||||+.+....... ..+. T Consensus 6 ~~lG~G~fg~Vy~a~~~~--t~~~vAiK~i~~~~~~~~--------------------------------~~~~------ 45 (330) T cd07834 6 KPIGSGAYGVVCSAVDTR--TGKKVAIKKISNVFDDLI--------------------------------DAKR------ 45 (330) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCCCHH--------------------------------HHHH------ T ss_conf 794226384999999889--998999999883014989--------------------------------9999------ Q ss_pred HHHHHHHHHHHHCCCCCCCC-CCCHHCCCHHC---CC-CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH-- Q ss_conf 59999889872024467766-43000010221---78-3353002478632426773320022568999999999998-- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQG-FRVPKIDWNRT---ER-DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH-- 277 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~s---t~-~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q-- 277 (517) +.+|++.+..++. +. |.+=.++..-+ .. -.|||||++| .+.+. ++..+ .+.+.-+..|+.| T Consensus 46 ~~rEi~il~~l~H-----pnIv~l~~~~~~~~~~~~~~~yiVmE~~~~-dL~~~--i~~~~----~l~e~~~~~~~~qil 113 (330) T cd07834 46 ILREIKILRHLKH-----ENIIGLLDIFRPPSPEDFNDVYIVTELMET-DLHKV--IKSPQ----PLSEDHIQYFLYQIL 113 (330) T ss_pred HHHHHHHHHHCCC-----CCCCEEEEEEECCCCCCCCEEEEEEECCCC-CHHHH--HHCCC----CCCHHHHHHHHHHHH T ss_conf 9999999997699-----998618899941787778759999979998-89999--97189----999999999999999 Q ss_pred -----HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf -----9744866178786228980289535743403121698 Q gi|254780623|r 278 -----TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 278 -----i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) +-..|+.|.|.-|.||+++.+|.+-+.|||+...++. T Consensus 114 ~aL~ylH~~~IiHRDiKPeNILl~~~~~vKL~DFGla~~~~~ 155 (330) T cd07834 114 RGLKYLHSAGVIHRDLKPSNLLVNSNCDLKICDFGLARGADP 155 (330) T ss_pred HHHHHHHHCCCCCCCCCHHHEEECCCCCEEECCCCCCHHCCC T ss_conf 999999878863676778993156677733311331010356 No 166 >cd05570 STKc_PKC STKc_PKC: Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide Probab=98.67 E-value=1.7e-07 Score=77.29 Aligned_cols=134 Identities=18% Similarity=0.258 Sum_probs=80.3 Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67788886555502128887236876403104688777788999875321146854334691799999998878886559 Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR 206 (517) Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~ 206 (517) |+.||-|+||.|+-+. +|+.||||+.+...- ... .-+ ..+ . T Consensus 3 IG~G~fG~V~la~~~~--t~~~~AiK~i~k~~~----------------~~~-----------~~~----~~~------~ 43 (318) T cd05570 3 LGKGSFGKVLLAELKG--TDELYAIKVLKKDVV----------------LQD-----------DDV----ECT------M 43 (318) T ss_pred EEECCCEEEEEEEECC--CCCEEEEEEECHHHC----------------CCH-----------HHH----HHH------H T ss_conf 6428891999999999--998999999827885----------------386-----------789----999------9 Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH------ Q ss_conf 9998898720244677664300001022178--33530024786324267733200225689999999999989------ Q gi|254780623|r 207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT------ 278 (517) Q Consensus 207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi------ 278 (517) +|.+.+.... +.|. |-+.|.-+.++ -.|||||++|-.+.+. +...+ .+.+.-+..|+.|+ T Consensus 44 ~E~~il~~~~----~hp~--Iv~l~~~f~~~~~lylVmEy~~gGdL~~~--l~~~~----~l~e~~a~~~~~qi~~aL~y 111 (318) T cd05570 44 TEKRVLALAG----KHPF--LTQLHSCFQTKDRLFFVMEYVNGGDLMYH--IQQQG----RFPEPRARFYAAEIVLGLQF 111 (318) T ss_pred HHHHHHHHHC----CCCC--EEEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCC----CCCHHHHHHHHHHHHHHHHH T ss_conf 9999998601----8997--76799999989999999966899878998--75458----99999999999999999999 Q ss_pred -HHCCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf -744866178786228980289535743403121 Q gi|254780623|r 279 -LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 279 -~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) -..|+.|-|.-|.||+++.+|.+-+.|||+... T Consensus 112 LH~~~IiHRDLKPeNILl~~~g~iKL~DFGlak~ 145 (318) T cd05570 112 LHERGIIYRDLKLDNVLLDAEGHIKIADFGMCKE 145 (318) T ss_pred HHHCCEEECCCCCCCCEECCCCCEEECCCCHHHH T ss_conf 9749778675676542165789788603403343 No 167 >PTZ00024 cyclin-dependent protein kinase; Provisional Probab=98.67 E-value=9.2e-08 Score=79.31 Aligned_cols=143 Identities=18% Similarity=0.237 Sum_probs=85.9 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +=|+.||-|+||+|.-+. +|+.||||+.+..-.. . ..++ ...+.. T Consensus 14 ~liG~G~fG~V~~a~d~~--t~~~vAiK~i~~~~~~-----------------~------------~~~~----~~~~~~ 58 (325) T PTZ00024 14 NFLGEGSYGKVYKAYDTI--LKKEVAIKKMKINKIS-----------------N------------YIDD----CGINFV 58 (325) T ss_pred CEEECCCCEEEEEEEECC--CCCEEEEEEEEHHHCC-----------------C------------HHHH----HHHHHH T ss_conf 897207584999999889--9989999998734442-----------------1------------7777----666899 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHHHH Q ss_conf 5999988987202446776643000010221783--35300247863242677332002----25689999999999989 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGH----DLERLSVTLVQSFLLHT 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~----d~~~la~~l~~~~~~qi 278 (517) +.+|.+-+..++. +. |-+.|.-+++++ .+||||++| .+.+. +...+. ..+.++..++.+ +.-+ T Consensus 59 ~~rEi~il~~l~H-----~n--Iv~~~~~~~~~~~~~iv~E~~~~-~L~~~--l~~~~~l~~~~~~~i~~qil~g-l~~l 127 (325) T PTZ00024 59 LLREIKIMKEIKH-----KN--IMSALDLYCEKDYINLVMEIMDY-DLAKI--INRKIFLTDSQKKCILLQILNG-LNVL 127 (325) T ss_pred HHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCC-CHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHH T ss_conf 9999999986799-----89--89398999968956999954787-88999--9716999999999999999999-9999 Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf 74486617878622898028953574340312169 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) -..|+.|-|.-|.||+++.+|.+-+.|||+..... T Consensus 128 H~~~IiHRDlKPeNILl~~~~~vKi~DFGla~~~~ 162 (325) T PTZ00024 128 HKYYFMHRDLSPANIFINKKGEVKIADFGLCSKYA 162 (325) T ss_pred HHCCEEECCCCHHHEEECCCCCEEECCCCCCCCCC T ss_conf 98897406677899478899998987677772334 No 168 >cd05627 STKc_NDR2 STKc_NDR2: Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regulating neuronal growth and differentiation, as well as in facilitating neurite Probab=98.67 E-value=2.6e-08 Score=83.64 Aligned_cols=249 Identities=18% Similarity=0.184 Sum_probs=125.2 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.||-|.||+|+-++ +|+.||+|+.+.. + ..+ .+....+.. T Consensus 7 k~lG~G~fG~V~~a~~~~--tg~~~AiK~i~k~-------~---------~~~---------------~~~~~~~~~--- 50 (360) T cd05627 7 KVIGRGAFGEVRLVQKKD--TGHIYAMKILRKA-------D---------MLE---------------KEQVAHIRA--- 50 (360) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEEHH-------H---------CCC---------------HHHHHHHHH--- T ss_conf 680128882999999889--9989999998068-------8---------458---------------999999999--- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHC-CCH---HHHHHHHHHHHHHHH Q ss_conf 5999988987202446776643000010221783--3530024786324267733200-225---689999999999989 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACG-HDL---ERLSVTLVQSFLLHT 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~-~d~---~~la~~l~~~~~~qi 278 (517) |...+.+.. .+. |.+.|..+.+++ .|||||++|-.+.+.- ...+ .+- ..++..++.+ +.-+ T Consensus 51 ---E~~il~~~~-----hp~--Iv~l~~~f~~~~~~ylvmEy~~gGdL~~~l--~~~~~l~e~~~~~~~~qi~~a-L~~l 117 (360) T cd05627 51 ---ERDILVEAD-----GAW--VVKMFYSFQDKRNLYLIMEFLPGGDMMTLL--MKKDTLSEEATQFYIAETVLA-IDAI 117 (360) T ss_pred ---HHHHHHHCC-----CCC--CCEEEEEEEECCEEEEEEECCCCCCHHHHH--HHCCCCCHHHHHHHHHHHHHH-HHHH T ss_conf ---999998789-----998--774999999899999999588997089997--616998999999999999999-9999 Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCC-------HHHHHHHHHH----HH---C Q ss_conf 74486617878622898028953574340312169899999997669997187-------2789999998----41---2 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRD-------YQRVADVHFE----AG---Y 344 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D-------~~~~~~~l~~----lg---~ 344 (517) -..|+.|-|.-|.||+++.+|.+-+.|||++..+.+..+..+..-+.+-...| ...-++.... +. . T Consensus 118 H~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v 197 (360) T cd05627 118 HQLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTV 197 (360) T ss_pred HHCCEEECCCCCCEEEECCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCE T ss_conf 85768861266662788799988984267652233123310110235577532221224321000000023333356611 Q ss_pred -CCCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH Q ss_conf -6677893689999998521001334333113568999997545279712888999999999988499876889888999 Q gi|254780623|r 345 -VPRHHNRFSFAQAIRAIGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVARMLNPEFNMWVS 423 (517) Q Consensus 345 -~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~~~ll~r~l~~lEG~~~~LdP~~d~~~~ 423 (517) .+...-++. +...-++...+=+++|-++.+++.=..-|.-.-+.+. . +.++.-.. -....|+.++-.. T Consensus 198 GTp~YmAPEv-------l~~~~y~~~~DiWSlGvilYeml~G~~PF~~~~~~~~--~-~~I~~~~~-~~~~p~~~~is~~ 266 (360) T cd05627 198 GTPDYIAPEV-------FMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQET--Y-RKVMNWKE-TLVFPPEVPISEK 266 (360) T ss_pred ECHHHCCHHH-------HCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH--H-HHHHCCCC-CCCCCCCCCCCHH T ss_conf 4842349845-------4699988899999999999999749899899998999--9-99973766-4227998988989 Q ss_pred HHHHHHHHHH Q ss_conf 9999999998 Q gi|254780623|r 424 SEPIVEEWIR 433 (517) Q Consensus 424 ~~p~~~~~l~ 433 (517) ++.++.+++. T Consensus 267 akDLI~~LL~ 276 (360) T cd05627 267 AKDLILRFCT 276 (360) T ss_pred HHHHHHHHCC T ss_conf 9999998656 No 169 >cd06611 STKc_SLK_like Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the Probab=98.66 E-value=1.1e-07 Score=78.64 Aligned_cols=141 Identities=17% Similarity=0.184 Sum_probs=90.6 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.||.|+-|.||+|+-+. +|+.||||+.+..-. .-.+ + T Consensus 11 ~~iG~G~fg~V~~~~~~~--~~~~vAvK~i~~~~~------------------------------~~~~----------~ 48 (280) T cd06611 11 GELGDGAFGKVYKAQHKE--TGLFAAAKIIQIESE------------------------------EELE----------D 48 (280) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEECCCH------------------------------HHHH----------H T ss_conf 598027784999999889--996999999810898------------------------------9999----------9 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHH---HHHHHHHHHHHHHHH Q ss_conf 599998898720244677664300001022178--335300247863242677332002256---899999999999897 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLE---RLSVTLVQSFLLHTL 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~l~~~~~~qi~ 279 (517) +.+|++.+.+++. |. |-+.|.-+.++ -.+||||++|-.+.+.-.-...+.+-. .++..++.+ +.-+- T Consensus 49 ~~~Ei~il~~l~H-----pn--Iv~l~~~~~~~~~~~ivmE~~~gg~L~~~l~~~~~~~~e~~~~~i~~qi~~a-l~ylH 120 (280) T cd06611 49 FMVEIDILSECKH-----PN--IVGLYEAYFYENKLWILIEFCDGGALDSIMLELERGLTEPQIRYVCRQMLEA-LNFLH 120 (280) T ss_pred HHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHH T ss_conf 9999999986799-----89--9909999998998999997689995999999748998999999999999999-99999 Q ss_pred HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 448661787862289802895357434031216989 Q gi|254780623|r 280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) ..|+.|-|.-|.||+++.+|.+-+.|||+...+... T Consensus 121 ~~~iiHRDIKp~NILl~~~~~vKl~DFG~s~~~~~~ 156 (280) T cd06611 121 SHKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKST 156 (280) T ss_pred HCCCCEEECCHHHEEECCCCCEEEEECCCCEECCCC T ss_conf 889803307626512568999999527776166887 No 170 >cd05587 STKc_cPKC STKc_cPKC: Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and ga Probab=98.66 E-value=1.1e-07 Score=78.86 Aligned_cols=139 Identities=19% Similarity=0.246 Sum_probs=82.8 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.||-|+||.|+-+. +|+.|||||.+.... +.. . +.. .. T Consensus 6 k~LG~G~fG~V~la~~~~--t~~~~AiKvi~k~~~--~~~-------------------------~---~~~-~~----- 47 (324) T cd05587 6 MVLGKGSFGKVMLAERKG--TDELYAIKILKKDVI--IQD-------------------------D---DVE-CT----- 47 (324) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHC--CCH-------------------------H---HHH-HH----- T ss_conf 796317690999999999--998999999837883--285-------------------------7---899-99----- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCH----HHHHHHHHHHHHHHH Q ss_conf 5999988987202446776643000010221783--3530024786324267733200225----689999999999989 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDL----ERLSVTLVQSFLLHT 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~----~~la~~l~~~~~~qi 278 (517) ..|.+.+.... .+.+ |-+.|.-+.+.+ .+||||++|-.+.+. +...+.-. ..++..++.+ +.-+ T Consensus 48 -~~E~~il~~~~-----~~~~-Iv~l~~~f~~~~~lylvmEy~~GGdL~~~--l~~~~~l~e~~a~~~~~qi~~a-L~yl 117 (324) T cd05587 48 -MVEKRVLALPG-----KPPF-LTQLHSCFQTMDRLYFVMEYVNGGDLMYH--IQQVGKFKEPHAVFYAAEIAIG-LFFL 117 (324) T ss_pred -HHHHHHHHHCC-----CCCE-EEEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHH T ss_conf -99999998636-----9982-83899999989999999948799848999--9980999999999999999999-9999 Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 744866178786228980289535743403121 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) -..|+.|-|.-|.||+++.+|.+-+.|||++.. T Consensus 118 H~~~IiHRDLKPeNILl~~~g~iKL~DFGlak~ 150 (324) T cd05587 118 HSKGIIYRDLKLDNVMLDAEGHIKIADFGMCKE 150 (324) T ss_pred HHCCCEECCCCCCCEEECCCCCEEEEECCHHHH T ss_conf 988946055675332575689788600431233 No 171 >cd07847 STKc_CDKL1_4 The catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4 subfamily. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformatio Probab=98.66 E-value=4.9e-08 Score=81.46 Aligned_cols=142 Identities=17% Similarity=0.228 Sum_probs=83.1 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.|+-|.||+|.-+. +|+.||||+.+..- . + . ...+.. T Consensus 7 ~~lG~G~fg~V~~~~~~~--t~~~vAiK~~~~~~-----~----------------------~--~---~~~~~~----- 47 (286) T cd07847 7 GKIGEGSYGVVFKCRNRE--TGQIVAIKKFVESE-----D----------------------D--P---VIKKIA----- 47 (286) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECHHC-----C----------------------C--H---HHHHHH----- T ss_conf 284136085999999889--99899999974002-----4----------------------8--7---899999----- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHC Q ss_conf 59999889872024467766430000102217833530024786324267733200225---689999999999989744 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDL---ERLSVTLVQSFLLHTLRD 281 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~---~~la~~l~~~~~~qi~~~ 281 (517) .+|.+.+..++. ..-|.+=.+|. -.+.-.+||||++|-.+.+...- ..+.+. +.++..++.+.- -+-.. T Consensus 48 -~~Ei~~l~~l~H----pnIv~~~~~~~-~~~~~~lVmE~~~~~~l~~l~~~-~~~l~e~~~~~i~~qll~al~-ylH~~ 119 (286) T cd07847 48 -LREIRMLKQLKH----PNLVNLIEVFR-RKRRLHLVFEYCDHTVLNELEKN-PRGVPEHQIKKIIWQTLQAVN-FCHKH 119 (286) T ss_pred -HHHHHHHHHCCC----CCCCEEEEEEE-ECCEEEEEEECCCCCCHHHHHHC-CCCCCHHHHHHHHHHHHHHHH-HHHHC T ss_conf -999999987799----79893999995-69989999965899849999973-799899999999999999999-99988 Q ss_pred CEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf 86617878622898028953574340312169 Q gi|254780623|r 282 GFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 282 GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) |+.|.|.-|.||+++.+|.+-+.|||+...++ T Consensus 120 ~iiHRDlKpeNILl~~~~~iKl~DFG~a~~~~ 151 (286) T cd07847 120 NCIHRDVKPENILITKQGQIKLCDFGFARILT 151 (286) T ss_pred CCCCCCCCHHHEEECCCCCEEEEECCCCEECC T ss_conf 87426455111038789949996412530135 No 172 >cd05087 PTKc_Aatyk1_Aatyk3 Catalytic Domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells Probab=98.66 E-value=1.3e-07 Score=78.11 Aligned_cols=138 Identities=17% Similarity=0.213 Sum_probs=88.9 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) ++|++|+-|+||+|++.++..+.+||||..+.... ..++.+ T Consensus 1 k~iG~G~fG~Vy~g~~~~~~~~~~vavK~~~~~~~---------------------------------------~~~~~~ 41 (269) T cd05087 1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRASAS---------------------------------------VQEQMK 41 (269) T ss_pred CCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCC---------------------------------------HHHHHH T ss_conf 90753887389999987897255999999788789---------------------------------------799999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC---CCCEEEEECCCCCCCCHHHHHHHHC----CCHH---HHHHHHHHHH Q ss_conf 5999988987202446776643000010221---7833530024786324267733200----2256---8999999999 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRT---ERDVITMEWIDGVKISDTEKLRACG----HDLE---RLSVTLVQSF 274 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s---t~~VLvmE~i~G~~i~d~~~l~~~~----~d~~---~la~~l~~~~ 274 (517) |.+|++.+.+++. |.|. +.| .+| .+..|||||++|-.+.+.-.-...+ .+.. +++..++.. T Consensus 42 f~~E~~~l~~l~H-----pNIv--~~~-g~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~~~~~qia~g- 112 (269) T cd05087 42 FLEEAQPYRSLQH-----PNLL--QCL-GQCTEVTPYLLVMEFCPLGDLKGYLRSCRAAELMTPDPRTLQRMACEIASG- 112 (269) T ss_pred HHHHHHHHHHCCC-----CCEE--EEE-EEECCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH- T ss_conf 9999999984899-----8886--795-587028827999981689869999874454455783899999999999999- Q ss_pred HHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHE Q ss_conf 998974486617878622898028953574340312 Q gi|254780623|r 275 LLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITG 310 (517) Q Consensus 275 ~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg 310 (517) +.-+-..|+.|.|.-|.||+++.++.+-+-|||+.. T Consensus 113 l~yLH~~~iiHrDLK~~NiLl~~~~~vKl~DFGls~ 148 (269) T cd05087 113 LLHLHKHNYVHSDLALRNCLLTSDLTVKIGDYGLSH 148 (269) T ss_pred HHHHHHCCCCCCCCCCCCEEECCCCCEEEEECCCCC T ss_conf 999952995646455030658689838995557875 No 173 >cd06629 STKc_MAPKKK_Bck1_like Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressio Probab=98.66 E-value=3.7e-08 Score=82.39 Aligned_cols=144 Identities=24% Similarity=0.307 Sum_probs=87.7 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-|+.||-|+||+|.-.+ +|+.||||+.+-.- .. . .+ -....++... . T Consensus 7 ~~iG~G~fg~V~~a~~~~--tg~~vAvK~i~~~~----------------~~----~-~~---~~~~~~~~~~------~ 54 (272) T cd06629 7 ELIGKGTYGRVYLALNVT--TGEMMAVKQVELPA----------------TI----A-GR---HDSRQKDMVK------A 54 (272) T ss_pred CEEECCCCCEEEEEEECC--CCCEEEEEEECCCC----------------CC----C-CC---HHHHHHHHHH------H T ss_conf 898017083999999889--99899999971010----------------21----2-11---5788899999------9 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH--- Q ss_conf 599998898720244677664300001022178--335300247863242677332002256899999999999897--- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL--- 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~--- 279 (517) +.+|.+.+.++.. |.| |. .+.-+.++ -.+||||++|-.+.+.- +..+ .+-+..+..|+.|++ T Consensus 55 ~~~Ei~~l~~l~H-----pnI-v~-~~~~~~~~~~~~ivmEy~~~g~L~~~l--~~~~----~l~e~~~~~~~~qll~gl 121 (272) T cd06629 55 LRSEIETLKDLDH-----LNI-VQ-YLGFETTEEYLSIFLEYVPGGSIGSCL--RTYG----RFEEQLVRFFTEQVLEGL 121 (272) T ss_pred HHHHHHHHHHCCC-----CCE-EE-EEEEEEECCEEEEEEEECCCCCHHHHH--HHCC----CCCHHHHHHHHHHHHHHH T ss_conf 9999999986899-----888-65-999995099899999903978789999--8659----999999999999999999 Q ss_pred ----HCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf ----4486617878622898028953574340312169 Q gi|254780623|r 280 ----RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 280 ----~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) ..|+.|-|.-|.||+++.+|.+-+.|||+....+ T Consensus 122 ~yLH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~ 159 (272) T cd06629 122 AYLHSKGILHRDLKADNLLVDADGICKISDFGISKKSD 159 (272) T ss_pred HHHHHCCCCCCCCCHHHEEECCCCCEEEEECCCCEECC T ss_conf 99998796178787211799899989994378771557 No 174 >cd05111 PTK_HER3 Pseudokinase Domain of the Protein Tyrosine Kinase, HER3. Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r Probab=98.66 E-value=2.5e-07 Score=75.91 Aligned_cols=142 Identities=14% Similarity=0.145 Sum_probs=85.2 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCE----EEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 666778888655550212888723----6876403104688777788999875321146854334691799999998878 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRK----VAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTK 200 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~----VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~ 200 (517) +.|++||-|+||+|++.. .|+. ||||+.+... + + . T Consensus 13 ~~lG~G~FG~Vykg~~~~--~~~~~~~~vaiK~~~~~~----------------------------~-----~------~ 51 (279) T cd05111 13 KVLGSGVFGTVHKGFWIP--EGDSIKIPVAIKTIQDRS----------------------------G-----R------Q 51 (279) T ss_pred EEEECCCCCEEEEEEEEC--CCCEEEEEEEEEEECCCC----------------------------C-----H------H T ss_conf 698127791999899937--998898999999926655----------------------------5-----7------9 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHH---HHHHHHHHH Q ss_conf 8865599998898720244677664300001022178--33530024786324267733200225689---999999999 Q gi|254780623|r 201 MEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERL---SVTLVQSFL 275 (517) Q Consensus 201 ~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~l---a~~l~~~~~ 275 (517) ..-+|..|+..+.+++. |.| -+.|. +|.. -.+||||+++-++.+.-.-.....+...+ +..++.. + T Consensus 52 ~~~~~~~e~~~l~~l~H-----pnI--v~l~g-~~~~~~~~iv~e~~~~GsL~~~l~~~~~~~~~~~~~~~~~qia~g-l 122 (279) T cd05111 52 TFTEITDHMLAMGSLDH-----AYI--VRLLG-ICPGASLQLVTQLSPLGSLLDHVRQHRGSLDPQRLLNWCVQIAKG-M 122 (279) T ss_pred HHHHHHHHHHHHHHCCC-----CCC--CEEEE-EEECCEEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-H T ss_conf 99999999999983899-----888--90999-993890799999589995789886457999999999999999999-9 Q ss_pred HHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHH Q ss_conf 98974486617878622898028953574340312169899 Q gi|254780623|r 276 LHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRE 316 (517) Q Consensus 276 ~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~ 316 (517) .-+-..|+.|.|.-|.||+++.++.+-+-|||+...+.+.. T Consensus 123 ~yLH~~~iiHrDlK~~NiLl~~~~~~Ki~DFGla~~~~~~~ 163 (279) T cd05111 123 YYLEEHRMVHRNLAARNILLKSDSQVQIADFGVADLLYPDD 163 (279) T ss_pred HHHHHCCCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCC T ss_conf 99976894446667200668789819998556743067888 No 175 >cd05593 STKc_PKB_gamma STKc_PKB_gamma: Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent Probab=98.66 E-value=1.3e-07 Score=78.19 Aligned_cols=136 Identities=17% Similarity=0.182 Sum_probs=82.0 Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67788886555502128887236876403104688777788999875321146854334691799999998878886559 Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR 206 (517) Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~ 206 (517) |+.|+-|+||.|+-+. +|+.||+|+.+.... .. . ++ .. ... T Consensus 3 LG~G~fG~V~l~~~k~--tg~~~AiKii~k~~~----------------~~---~-----------~~-~~------~~~ 43 (325) T cd05593 3 LGKGTFGKVILVREKA--SGKYYAMKILKKEVI----------------IA---K-----------DE-VA------HTL 43 (325) T ss_pred EEECCCEEEEEEEECC--CCCEEEEEEECHHHC----------------CC---H-----------HH-HH------HHH T ss_conf 5407085999999889--998999999826885----------------48---7-----------99-99------999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHH----HHHHHHHHHHHHHHHH Q ss_conf 99988987202446776643000010221783--35300247863242677332002256----8999999999998974 Q gi|254780623|r 207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLE----RLSVTLVQSFLLHTLR 280 (517) Q Consensus 207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~----~la~~l~~~~~~qi~~ 280 (517) +|.+-+.+.+ +|.| .+.|..+.+++ .+||||++|-.+.+. +...+.-.. .++..++.+ +.-+-. T Consensus 44 ~E~~iL~~l~-----Hp~I--v~l~~~f~~~~~lylVmEy~~gG~L~~~--l~~~~~l~e~~~~~~~~qil~a-L~yLH~ 113 (325) T cd05593 44 TESRVLKNTR-----HPFL--TSLKYSFQTKDRLCFVMEYVNGGELFFH--LSRERVFSEDRTRFYGAEIVSA-LDYLHS 113 (325) T ss_pred HHHHHHHHCC-----CCCC--CEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHHH T ss_conf 9999998689-----9988--7699999989999999985599989999--8635899999999999999999-999975 Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 4866178786228980289535743403121 Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) .|+.|-|.-|.||+++.+|.+-+.|||+... T Consensus 114 ~~IiHRDLKPeNILld~~g~iKL~DFGlak~ 144 (325) T cd05593 114 GKIVYRDLKLENLMLDKDGHIKITDFGLCKE 144 (325) T ss_pred CCEEECCCCCCCCCCCCCCCEEECCCCHHHH T ss_conf 9888511575456636789785322023342 No 176 >cd05613 STKc_MSK1_N STKc_MSK1_N: Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the Probab=98.66 E-value=3.3e-08 Score=82.81 Aligned_cols=141 Identities=15% Similarity=0.240 Sum_probs=82.6 Q ss_pred HHHHHHHHHHHHHHHE-ECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 6667788886555502-128887236876403104688777788999875321146854334691799999998878886 Q gi|254780623|r 125 DPIAAASIAQVHPAVV-HDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM 203 (517) Q Consensus 125 ePlasASiaQVh~A~l-~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El 203 (517) +.|++||-|+||.|+- .+.++|+.|||||.+..-- .++ .. ....+. T Consensus 6 ~~iG~G~fg~V~~~~~~~~~~t~~~~AiK~i~k~~~----------------~~~----------~~----~~~~~~--- 52 (290) T cd05613 6 KVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATI----------------VQK----------AK----TTEHTR--- 52 (290) T ss_pred EEEECCCCEEEEEEEECCCCCCCCEEEEEEEEHHHH----------------HHH----------HH----HHHHHH--- T ss_conf 795138883999999853278894999999807884----------------010----------67----899999--- Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH---- Q ss_conf 5599998898720244677664300001022178--3353002478632426773320022568999999999998---- Q gi|254780623|r 204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH---- 277 (517) Q Consensus 204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q---- 277 (517) .|.+-+..++ ..|.| -+.|..+.++ -.+||||++|-.+.+. +...+ .+.+.-+..|+.| T Consensus 53 ---~E~~il~~l~----~~p~I--v~l~~~~~~~~~~ylvmEy~~gg~L~~~--l~~~~----~l~e~~~~~~~~qil~a 117 (290) T cd05613 53 ---TERQVLEHIR----QSPFL--VTLHYAFQTDTKLHLILDYINGGELFTH--LSQRE----RFKEQEVQIYSGEIVLA 117 (290) T ss_pred ---HHHHHHHHCC----CCCCE--EEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCC----CCCHHHHHHHHHHHHHH T ss_conf ---9999998548----99967--8999999989999999967799888999--98749----99999999999999999 Q ss_pred ---HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf ---974486617878622898028953574340312169 Q gi|254780623|r 278 ---TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 278 ---i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) +-..|+.|-|.-|.||+++.+|.+.+.|||+...+. T Consensus 118 l~ylH~~~IiHRDiKpeNILl~~~g~ikl~DFGls~~~~ 156 (290) T cd05613 118 LEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFH 156 (290) T ss_pred HHHHHHCCCEECCCCHHHCCCCCCCCEEECCCCCCEEEC T ss_conf 999998894532366365446689988983276011212 No 177 >cd05057 PTKc_EGFR_like Catalytic Domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea Probab=98.66 E-value=1.3e-07 Score=78.21 Aligned_cols=148 Identities=16% Similarity=0.145 Sum_probs=91.3 Q ss_pred HHH--HHHHHHHHHHHHHHHEECCC--CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 867--66677888865555021288--87236876403104688777788999875321146854334691799999998 Q gi|254780623|r 122 EFD--DPIAAASIAQVHPAVVHDIN--GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ 197 (517) Q Consensus 122 ~fd--ePlasASiaQVh~A~l~d~~--~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 197 (517) .|+ +.|++||.|.||+|++...+ ...+||||+.+..-. .+.. T Consensus 8 d~e~~~~lG~G~fG~Vyk~~~~~~~~~~~~~vaiK~~~~~~~-----------------------------~~~~----- 53 (279) T cd05057 8 ELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREATS-----------------------------PKAN----- 53 (279) T ss_pred HCEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEEECCCCC-----------------------------HHHH----- T ss_conf 998826973188819998999279986007999999887678-----------------------------7899----- Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHH---HHHHHHHH Q ss_conf 878886559999889872024467766430000102217833530024786324267733200225689---99999999 Q gi|254780623|r 198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERL---SVTLVQSF 274 (517) Q Consensus 198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~l---a~~l~~~~ 274 (517) -+|.+|+..+.+++.-+ -|.+=.++ .+....+||||++|-++.+.-.-.....+...+ +..++.+ T Consensus 54 -----~~~~~E~~~l~~l~Hpn----Iv~l~g~~--~~~~~~lV~e~~~~GsL~~~l~~~~~~l~~~~~~~~~~qia~g- 121 (279) T cd05057 54 -----KEILDEAYVMASVDHPH----VVRLLGIC--LTSQVQLITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKG- 121 (279) T ss_pred -----HHHHHHHHHHHHCCCCC----EEEECEEE--ECCCEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH- T ss_conf -----99999999998479998----86001289--5497699999579995899997347899999999999999999- Q ss_pred HHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 99897448661787862289802895357434031216989 Q gi|254780623|r 275 LLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 275 ~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) +.-+-..|+.|.|.-|.||+++.++.+.+-|||+...++.. T Consensus 122 l~yLH~~~iiHRDlK~~NILl~~~~~~ki~DFGls~~~~~~ 162 (279) T cd05057 122 MSYLEERRLVHRDLAARNVLVKTPNHVKITDFGLAKLLDAD 162 (279) T ss_pred HHHHHHCCCCCCCCCHHHEEECCCCCEEEECCCCCEECCCC T ss_conf 99997689634657631033689992899606643316899 No 178 >cd05603 STKc_SGK2 STKc_SGK2: Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Probab=98.65 E-value=1.6e-07 Score=77.49 Aligned_cols=137 Identities=17% Similarity=0.194 Sum_probs=79.7 Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67788886555502128887236876403104688777788999875321146854334691799999998878886559 Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR 206 (517) Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~ 206 (517) |+.||-|+||+|+-+. +|+.||+|+.+...- ... .....+..| T Consensus 3 IG~G~fG~V~~a~~~~--tg~~~AiK~i~k~~~----------------~~~---------------~~~~~~~~E---- 45 (321) T cd05603 3 IGKGSFGKVLLAKRKS--DGSFYAVKVLQKKTI----------------LKK---------------KEQNHIMAE---- 45 (321) T ss_pred EEECCCEEEEEEEECC--CCCEEEEEEEEHHHH----------------CCH---------------HHHHHHHHH---- T ss_conf 6238794999999889--998999999837880----------------488---------------999999999---- Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHC-CCH---HHHHHHHHHHHHHHHHH Q ss_conf 99988987202446776643000010221783--3530024786324267733200-225---68999999999998974 Q gi|254780623|r 207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACG-HDL---ERLSVTLVQSFLLHTLR 280 (517) Q Consensus 207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~-~d~---~~la~~l~~~~~~qi~~ 280 (517) ..-+ .+.. ++|. |-+.|..+.+++ .+||||++|-.+.+. +...+ .+- ..++..++.+ +.-+-. T Consensus 46 --~~il---l~~l-~Hp~--Iv~l~~~f~~~~~lyivmEy~~gGdL~~~--l~~~~~~~e~~a~~~~~qi~~a-L~yLH~ 114 (321) T cd05603 46 --RNVL---LKNL-KHPF--LVGLHYSFQTAEKLYFVLDYVNGGELFFH--LQRERCFLEPRARFYAAEVASA-IGYLHS 114 (321) T ss_pred --HHHH---HHHC-CCCC--CCCEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHHH T ss_conf --9999---9868-9989--99099999989999999968799869999--9874999999999999999999-999998 Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 4866178786228980289535743403121 Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) .|+.|-|.-|.||+++.+|.+.+.|||+... T Consensus 115 ~~IiHRDLKPeNILld~~g~iKL~DFGlak~ 145 (321) T cd05603 115 LNIIYRDLKPENILLDSQGHVVLTDFGLCKE 145 (321) T ss_pred CCCEECCCCCCCCCCCCCCCEEECCCHHHHH T ss_conf 8944024365540115889888513254331 No 179 >cd05591 STKc_nPKC_epsilon STKc_nPKC_epsilon: Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes Probab=98.65 E-value=1.7e-07 Score=77.22 Aligned_cols=134 Identities=16% Similarity=0.244 Sum_probs=80.0 Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67788886555502128887236876403104688777788999875321146854334691799999998878886559 Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR 206 (517) Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~ 206 (517) |+.|+-|+||.|+-+. +|+.||||+.+.... ++.+ +.. .. . T Consensus 3 lG~G~fG~V~la~~~~--t~~~~AiKvi~k~~~--~~~~----------------------------~~~-~~------~ 43 (321) T cd05591 3 LGKGSFGKVMLAELKG--TDEVYAIKVLKKDVI--LQDD----------------------------DVD-CT------M 43 (321) T ss_pred EEECCCEEEEEEEECC--CCCEEEEEEEEHHHC--CCHH----------------------------HHH-HH------H T ss_conf 8438792999999999--998999999807885--3846----------------------------799-99------9 Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH------- Q ss_conf 9998898720244677664300001022178--3353002478632426773320022568999999999998------- Q gi|254780623|r 207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH------- 277 (517) Q Consensus 207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q------- 277 (517) .|.+.+... .+.|. |.+.|..+.++ -.+||||++|-.+.+. +...+ .+.+..+..|+.| T Consensus 44 ~E~~il~~~----~~Hp~--Iv~l~~~f~~~~~lylvmEy~~gGdL~~~--l~~~~----~l~e~~~~~~~~qi~~aL~y 111 (321) T cd05591 44 TEKRILALA----AKHPF--LTALHCCFQTKDRLFFVMEYVNGGDLMFQ--IQRSR----KFDEPRSRFYAAEVTLALMF 111 (321) T ss_pred HHHHHHHHH----CCCCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCC----CCCHHHHHHHHHHHHHHHHH T ss_conf 999999984----79998--89599999989999999958899818999--98749----99999999999999999999 Q ss_pred HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 9744866178786228980289535743403121 Q gi|254780623|r 278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) +-..|+.|-|.-|.||+++.+|.+-+.|||+... T Consensus 112 lH~~gIiHRDLKPeNILl~~~g~iKL~DFGlak~ 145 (321) T cd05591 112 LHRHGVIYRDLKLDNILLDAEGHCKLADFGMCKE 145 (321) T ss_pred HHHCCEEECCCCCCCCCCCCCCCEEECCCCHHHH T ss_conf 9859778676776553305788577413123222 No 180 >cd07865 STKc_CDK9 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9 subfamily. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participa Probab=98.65 E-value=8.9e-08 Score=79.43 Aligned_cols=142 Identities=13% Similarity=0.193 Sum_probs=81.5 Q ss_pred HHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 867--666778888655550212888723687640310468877778899987532114685433469179999999887 Q gi|254780623|r 122 EFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT 199 (517) Q Consensus 122 ~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 199 (517) .++ +.|++||-|+||+|+-.. +|+.||||+.+-. .... .+.... T Consensus 13 ~Y~~~~~IG~G~fg~V~~a~~~~--t~~~vAiK~i~~~--------------------~~~~------------~~~~~~ 58 (310) T cd07865 13 KYEKLAKIGQGTFGEVFKARHKK--TKQIVALKKVLME--------------------NEKE------------GFPITA 58 (310) T ss_pred CEEEEEEEECCCCCEEEEEEECC--CCCEEEEEEEECC--------------------CCCH------------HHHHHH T ss_conf 87776697337284999999999--9979999998410--------------------0432------------668999 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHC-------CCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHH Q ss_conf 8886559999889872024467766430000-------102217833530024786324267733200225689999999 Q gi|254780623|r 200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKI-------DWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQ 272 (517) Q Consensus 200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~v-------y~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~ 272 (517) .+|.+.+..++. ..-+.+-.+ +..+-+.-.|||||++|--. +. +.... ..+...-+. T Consensus 59 ------~rEi~il~~l~H----~niv~~~~~~~~~~~~~~~~~~~~~lv~E~~~~~l~-~~--~~~~~---~~~~~~~i~ 122 (310) T cd07865 59 ------LREIKILQLLKH----ENVVNLIEICRTKATPYNRFKGSFYLVFEFCEHDLA-GL--LSNKN---VKFTLSEIK 122 (310) T ss_pred ------HHHHHHHHHCCC----CCCCEEEEEEEECCCCCCCCCCEEEEEEECCCCCHH-HH--HHHCC---CCCCHHHHH T ss_conf ------999999997479----981406889973364555668759999966899768-88--86346---898999999 Q ss_pred HHHHHH-------HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf 999989-------74486617878622898028953574340312169 Q gi|254780623|r 273 SFLLHT-------LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 273 ~~~~qi-------~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) .+++|+ -..|+.|.|.-|.||+++.+|.+-+.|||+...++ T Consensus 123 ~i~~Qil~aL~yLH~~gIiHRDlKPeNILl~~~~~vKl~DFGla~~~~ 170 (310) T cd07865 123 KVMKQLLNGLYYIHRNKILHRDMKAANILITKDGILKLADFGLARAFS 170 (310) T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCEEEECCCCCEECC T ss_conf 999999999999987877516787899688788988982166441323 No 181 >cd05047 PTKc_Tie Catalytic Domain of Tie Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l Probab=98.65 E-value=6.8e-07 Score=72.61 Aligned_cols=142 Identities=14% Similarity=0.138 Sum_probs=82.9 Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67788886555502128887236876403104688777788999875321146854334691799999998878886559 Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR 206 (517) Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~ 206 (517) |+.||-|+||+|+.+.++....||||+.+....+ + .+-+|. T Consensus 3 IG~G~fG~Vy~~~~~~~g~~~~vaiK~~~~~~~~----~-----------------------------------~~~~~~ 43 (270) T cd05047 3 IGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASK----D-----------------------------------DHRDFA 43 (270) T ss_pred CCCCCCCEEEEEEECCCCEEEEEEEEEECCCCCH----H-----------------------------------HHHHHH T ss_conf 1117996899999938997999999997844482----6-----------------------------------899999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHH---------------HCCCHH---HHHH Q ss_conf 9998898720244677664300001022178335300247863242677332---------------002256---8999 Q gi|254780623|r 207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRA---------------CGHDLE---RLSV 268 (517) Q Consensus 207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~---------------~~~d~~---~la~ 268 (517) +|+..+.++.++ . .-|.+=.++ +-...-.|||||++|-.+.+.-.-.. ...+.+ +++. T Consensus 44 ~E~~~l~~l~~H-p--nIv~l~g~~-~~~~~~~lv~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 119 (270) T cd05047 44 GELEVLCKLGHH-P--NIINLLGAC-EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAA 119 (270) T ss_pred HHHHHHHHCCCC-C--CEEEEEEEE-CCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCHHHHCCCCCCCCCHHHHHHHHH T ss_conf 999999963489-9--888899898-529989999980799969999985465544620211146557789999999999 Q ss_pred HHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC Q ss_conf 99999999897448661787862289802895357434031216 Q gi|254780623|r 269 TLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL 312 (517) Q Consensus 269 ~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l 312 (517) .++.+ +.-+-..|+.|.|.-|.||+++.++.+-+-|||+.... T Consensus 120 ~ia~g-l~yLH~~~iiHRDlK~~NILl~~~~~~Kl~DFGla~~~ 162 (270) T cd05047 120 DVARG-MDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQ 162 (270) T ss_pred HHHHH-HHHHHCCCCCCCCCCHHEEEECCCCCEEEEECCCCCCC T ss_conf 99999-99871099253767720289999997899566888678 No 182 >cd05060 PTKc_Syk_like Catalytic Domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi Probab=98.64 E-value=2.7e-07 Score=75.76 Aligned_cols=140 Identities=17% Similarity=0.136 Sum_probs=86.1 Q ss_pred HHHHHHHHHHHHHHHEECCC-CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288-87236876403104688777788999875321146854334691799999998878886 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDIN-GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM 203 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~-~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El 203 (517) +.|++||-|.||+|+.+..+ .+..||||+.++.-..... - T Consensus 1 ~~iG~G~fg~Vy~g~~~~~~~~~~~VAiK~~~~~~~~~~~---------------------------------------~ 41 (257) T cd05060 1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGK---------------------------------------K 41 (257) T ss_pred CCCCCCCCCEEEEEEEECCCCEEEEEEEEEECHHHCHHHH---------------------------------------H T ss_conf 9485588858998999868984899999998822186789---------------------------------------9 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCC---HHHHHHHHHH--HHHHHH Q ss_conf 55999988987202446776643000010221783353002478632426773320022---5689999999--999989 Q gi|254780623|r 204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHD---LERLSVTLVQ--SFLLHT 278 (517) Q Consensus 204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d---~~~la~~l~~--~~~~qi 278 (517) .|.+|++.+.+++.-+ -|.+=.+.. ...-+|||||++|-++.+.-.- ....+ ...++..++. .|+ T Consensus 42 ~f~~E~~~l~~l~Hpn----Iv~~~g~~~--~~~~~lV~Ey~~~G~L~~~l~~-~~~~~~~~~~~~~~qia~gl~yL--- 111 (257) T cd05060 42 EFLREASVMAQLDHPC----IVRLIGVCK--GEPLMLVMELAPLGPLLKYLKK-RREIPVSDLKELAHQVAMGMAYL--- 111 (257) T ss_pred HHHHHHHHHHHCCCCC----EEEEEEEEE--CCCEEEEEECCCCCCHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHH--- T ss_conf 9999999998679998----842641893--6936999986899999999986-79999999999999999999999--- Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf 74486617878622898028953574340312169 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) -..|+.|.|.-|-||+++.+|.+-+-|||+...+. T Consensus 112 H~~~ivHrDlK~~NiLl~~~~~vKl~DFGls~~~~ 146 (257) T cd05060 112 ESKHFVHRDLAARNVLLVNRHQAKISDFGMSRALG 146 (257) T ss_pred HHCCEEECCCCCCCEEECCCCCEEEEECCCCEECC T ss_conf 86995616567042578689978884140320247 No 183 >cd07880 STKc_p38gamma_MAPK12 The catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MA Probab=98.64 E-value=8e-08 Score=79.78 Aligned_cols=145 Identities=18% Similarity=0.240 Sum_probs=80.1 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 666778888655550212888723687640310-4688777788999875321146854334691799999998878886 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPG-VRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM 203 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~-i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El 203 (517) +.|++||-|+||+|+-+. +|+.||||+.+.. ..+. +..... T Consensus 21 ~~IG~G~fG~V~~a~d~~--t~~~vAiK~i~~~~~~~~---------------------------------~~~~~~--- 62 (343) T cd07880 21 KQVGSGAYGTVCSALDRR--TGAKVAIKKLYRPFQSEL---------------------------------FAKRAY--- 62 (343) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHCCHH---------------------------------HHHHHH--- T ss_conf 797216274999999889--998999999873443869---------------------------------999999--- Q ss_pred HHHHHHHHHHHHHCC-CCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCH---HHHHHHHHHHHHHHHH Q ss_conf 559999889872024-467766430000102217833530024786324267733200225---6899999999999897 Q gi|254780623|r 204 DLRLEAAAFSEMAEN-TVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDL---ERLSVTLVQSFLLHTL 279 (517) Q Consensus 204 D~~~Ea~n~~~~~~~-~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~---~~la~~l~~~~~~qi~ 279 (517) +|.+.+..++.. .-..-.+..+.-..+..+.-.+||||+ |..+.+... ...... +.++..++.+ +.-+- T Consensus 63 ---rEi~il~~l~h~nIv~l~~~f~~~~~~~~~~~~ylv~e~~-g~~L~~~~k--~~~l~e~~i~~i~~Qil~a-L~ylH 135 (343) T cd07880 63 ---RELRLLKHMKHENVIGLLDVFTPDLSLDRFHDFYLVMPFM-GTDLGKLMK--HEKLSEDRIQFLVYQMLKG-LKYIH 135 (343) T ss_pred ---HHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEEEECC-CCCHHHHHH--CCCCCHHHHHHHHHHHHHH-HHHHH T ss_conf ---9999998668989561778983277545566079999468-867999986--4998999999999999999-99999 Q ss_pred HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 44866178786228980289535743403121698 Q gi|254780623|r 280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) ..|+.|.|.-|.||+++.++.+-+.|||+....+. T Consensus 136 ~~gIiHRDLKPeNILl~~~~~vKl~DFGla~~~~~ 170 (343) T cd07880 136 AAGIIHRDLKPGNLAVNEDCELKILDFGLARQTDS 170 (343) T ss_pred HCCCCCCCCCHHHEEECCCCCEEEEECCCCCCCCC T ss_conf 78964156743656886778579734567744511 No 184 >cd07842 STKc_CDK8_like The catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with Probab=98.64 E-value=1e-07 Score=79.03 Aligned_cols=147 Identities=15% Similarity=0.214 Sum_probs=83.4 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.|+-|.||+|+.++..+|+.||||+.+......-. +.....+|++ T Consensus 6 ~~lG~G~fg~V~~~~~~~~~~~~~~AiK~i~~~~~~~~~-------------------------------~~~~~~~Ei~ 54 (315) T cd07842 6 GCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTG-------------------------------ISQSACREIA 54 (315) T ss_pred EEEECCCCEEEEEEEEEECCCCCEEEEEEECCCCCCHHH-------------------------------HHHHHHHHHH T ss_conf 498325681989999846899949999998421010046-------------------------------6899999999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC-EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH---- Q ss_conf 5999988987202446776643000010221783-35300247863242677332002256899999999999897---- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD-VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL---- 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~-VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~---- 279 (517) .++.++ ...-|.+-.+|.+-.+.. .|||||+++--.+-+..... .....+....+..+++|++ T Consensus 55 ------il~~l~----hpnIv~l~~~~~~~~~~~~~lv~E~~~~~l~~~i~~~~~--~~~~~~~~~~i~~i~~Qll~aL~ 122 (315) T cd07842 55 ------LLRELK----HENVVSLVEVFLEHADKSVYLLFDYAEHDLWQIIKFHRQ--AKRVSIPPSMVKSLLWQILNGVH 122 (315) T ss_pred ------HHHHCC----CCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHH--HCCCCCCHHHHHHHHHHHHHHHH T ss_conf ------998669----988641778997089878999991379987999998666--22788999999999999999999 Q ss_pred ---HCCEECCCCCCCEEEEEC----CCCEEEEECCHHEECCH Q ss_conf ---448661787862289802----89535743403121698 Q gi|254780623|r 280 ---RDGFFHADLHPGNLFVDS----KGYIVAVDMGITGRLSK 314 (517) Q Consensus 280 ---~~GfFHaDPHpGNi~v~~----dg~i~~lDfG~vg~l~~ 314 (517) ..|+.|.|.-|.||++.. .|.+-+.|||....+.. T Consensus 123 yLH~~~IiHrDlKPeNILl~~~~~~~~~iKl~DFG~a~~~~~ 164 (315) T cd07842 123 YLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNA 164 (315) T ss_pred HHHHCCEEECCCCCCCEEEECCCCCCCCEEECCCCEEEECCC T ss_conf 999889163337610079832567778788668730366157 No 185 >cd07864 STKc_CDK12 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12 subfamily. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. C Probab=98.64 E-value=4.8e-08 Score=81.52 Aligned_cols=140 Identities=21% Similarity=0.256 Sum_probs=80.5 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.|+-|+||+|.-++ +|+.||||+.+-.-.. + .+.... T Consensus 13 ~~lG~G~fg~V~~a~~~~--t~~~vAiK~i~~~~~~----~----------------------------~~~~~~----- 53 (302) T cd07864 13 GQIGEGTYGQVYKARDKD--TGELVALKKVRLDNEK----E----------------------------GFPITA----- 53 (302) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEECCCCC----H----------------------------HHHHHH----- T ss_conf 898526381999999889--9979999999501022----2----------------------------448999----- Q ss_pred HHHHHHHHHHHH--------CCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 599998898720--------244677664300001022178335300247863242677332002256899999999999 Q gi|254780623|r 205 LRLEAAAFSEMA--------ENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLL 276 (517) Q Consensus 205 ~~~Ea~n~~~~~--------~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~ 276 (517) .+|.+.+..+. +.+.+..... .+.+-.+.-.+||||++|--... +... ...+.+.-+..|++ T Consensus 54 -~~Ei~il~~l~h~niv~~~~~~~~~~~~~---~~~~~~~~~~iv~E~~~~~l~~~---l~~~---~~~~~e~~~~~~~~ 123 (302) T cd07864 54 -VREIKILRQLNHRSIVNLKEIVTDKQDAL---DFKKDKGAFYLVFEYMDHDLMGL---LESG---LVHFSEDHIKSFMK 123 (302) T ss_pred -HHHHHHHHHHCCCCCCCEEEEEECCCCCC---CCCCCCCEEEEEEECCCCCHHHH---HHHC---CCCCCHHHHHHHHH T ss_conf -99999999706888330467883055432---20036875999997999966999---9846---78989999999999 Q ss_pred HHH-------HCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf 897-------4486617878622898028953574340312169 Q gi|254780623|r 277 HTL-------RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 277 qi~-------~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) |++ ..|+.|.|.-|.||+++.+|.+-+.|||+...+. T Consensus 124 Qil~gL~yLH~~giiHRDlKPeNILi~~~~~vKl~DFG~a~~~~ 167 (302) T cd07864 124 QLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFGLARLYN 167 (302) T ss_pred HHHHHHHHHHHCCCEECCCCHHHEEECCCCCEEEEECCCCEECC T ss_conf 99999999986994604587698699899988997568751046 No 186 >cd05044 PTKc_c-ros Catalytic Domain of the Protein Tyrosine Kinase, C-ros. Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male Probab=98.64 E-value=1.2e-07 Score=78.32 Aligned_cols=140 Identities=21% Similarity=0.312 Sum_probs=83.8 Q ss_pred HHHHHHHHHHHHHHEEC----CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 66778888655550212----88872368764031046887777889998753211468543346917999999988788 Q gi|254780623|r 126 PIAAASIAQVHPAVVHD----INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKM 201 (517) Q Consensus 126 PlasASiaQVh~A~l~d----~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 201 (517) -|++||.|+||+|+.++ ++++++||||+.+++..+. + T Consensus 2 ~iG~G~fG~Vy~~~~~~~~~~~~~~~~VAvK~l~~~~~~~---------------------------------------~ 42 (270) T cd05044 2 LLGSGAFGEVYEGTAVDILGPGEGEIRVAVKTLRKGATDQ---------------------------------------E 42 (270) T ss_pred CCEECCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCHH---------------------------------------H T ss_conf 6403888589968984776677556699999988668979---------------------------------------9 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCC-CCHHCCCHHCCCCEEEEECCCCCCCCHHHH-HHH-----HCCCHHH---HHHHHH Q ss_conf 865599998898720244677664-300001022178335300247863242677-332-----0022568---999999 Q gi|254780623|r 202 EMDLRLEAAAFSEMAENTVKDQGF-RVPKIDWNRTERDVITMEWIDGVKISDTEK-LRA-----CGHDLER---LSVTLV 271 (517) Q Consensus 202 ElD~~~Ea~n~~~~~~~~~~~~~v-~vP~vy~~~st~~VLvmE~i~G~~i~d~~~-l~~-----~~~d~~~---la~~l~ 271 (517) +-+|.+|++-+.+++. |.| .+=.++. -...-.|||||++|-.+.+.-. ... ....... ++..++ T Consensus 43 ~~~~~~E~~il~~l~H-----pnIv~~~g~~~-~~~~~~lvmE~~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia 116 (270) T cd05044 43 KKEFLKEAHLMSNFNH-----PNILKLLGVCL-LNEPQYLILELMEGGDLLSYLRGARVTRFGPPLLTLSELLDICLDVA 116 (270) T ss_pred HHHHHHHHHHHHHCCC-----CCCCEEEEEEE-ECCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 9999999999985899-----89881989999-89988999984689869999863133557776679999999999999 Q ss_pred H--HHHHHHHHCCEECCCCCCCEEEEECCCC------EEEEECCHHEECC Q ss_conf 9--9999897448661787862289802895------3574340312169 Q gi|254780623|r 272 Q--SFLLHTLRDGFFHADLHPGNLFVDSKGY------IVAVDMGITGRLS 313 (517) Q Consensus 272 ~--~~~~qi~~~GfFHaDPHpGNi~v~~dg~------i~~lDfG~vg~l~ 313 (517) . .|+ -..|+.|.|.-|.||+++.+|. +-+.|||+...+. T Consensus 117 ~gl~yL---H~~~ivHrDlKp~NILl~~~~~~~~~~~vKl~DFGla~~~~ 163 (270) T cd05044 117 KGCVYL---ERMHFIHRDLAARNCLVSEKTYSDADRVVKIGDFGLARDIY 163 (270) T ss_pred HHHHHH---HHCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCC T ss_conf 999999---97895167777441797357777777727981447733446 No 187 >cd07840 STKc_CDK9_like The catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RN Probab=98.64 E-value=7.7e-08 Score=79.91 Aligned_cols=140 Identities=17% Similarity=0.279 Sum_probs=81.9 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|++|+-|+||+|.-+ .+|+.||||+.+..-.. +++..... T Consensus 5 ~~iG~G~fg~V~~~~~~--~t~~~vAiK~i~~~~~~--------------------------------~~~~~~~~---- 46 (287) T cd07840 5 AQIGEGTYGQVYKARNK--KTGELVALKKIRMENEK--------------------------------EGFPITAI---- 46 (287) T ss_pred EEEECCCCEEEEEEEEC--CCCCEEEEEEEECCCCC--------------------------------HHHHHHHH---- T ss_conf 99732869299999988--99989999998300154--------------------------------06689999---- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHH-CCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH----- Q ss_conf 599998898720244677664300001022-17833530024786324267733200225689999999999989----- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNR-TERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT----- 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~-st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi----- 278 (517) +|.+.++.+.. ..-+.+-.++.+- .+.=.+||||++| .+... +...+. .+.+.-+..|++|+ T Consensus 47 --~Ei~il~~l~h----pnIi~~~~~~~~~~~~~~~iv~E~~~~-dL~~~--l~~~~~---~~~~~~~~~~~~qll~al~ 114 (287) T cd07840 47 --REIKLLQKLRH----PNIVRLKEIVTSKGKGSIYMVFEYMDH-DLTGL--LDSPEV---KFTESQIKCYMKQLLEGLQ 114 (287) T ss_pred --HHHHHHHHCCC----CCCCCEEEEEEECCCCEEEEEEECCCC-CHHHH--HHHCCC---CCCHHHHHHHHHHHHHHHH T ss_conf --99999997799----897636789996699879999926898-78999--982689---9899999999999999999 Q ss_pred --HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf --744866178786228980289535743403121698 Q gi|254780623|r 279 --LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 279 --~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) -..|+.|.|.-|.||+++.+|.+-+.|||....++. T Consensus 115 ylH~~~iiHRDlKp~NILl~~~~~vKl~DFG~a~~~~~ 152 (287) T cd07840 115 YLHSNGILHRDIKGSNILINNDGVLKIADFGLARPYTK 152 (287) T ss_pred HHHHCCEEEEECCHHHEEECCCCCEEEEECCCCEECCC T ss_conf 99879977533677884788999989836798736467 No 188 >cd05599 STKc_NDR_like STKc_NDR_like: Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplication. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. This su Probab=98.64 E-value=7.8e-08 Score=79.90 Aligned_cols=144 Identities=21% Similarity=0.316 Sum_probs=88.1 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.||-|.||+|+-+. +|+.||||+.+..- +.+ .+-...+. T Consensus 7 k~lG~G~fg~V~~~~~~~--t~~~~AiK~i~k~~----------------~~~---------------~~~~~~~~---- 49 (364) T cd05599 7 KVIGRGAFGEVRLVQKKD--TGHIYAMKKLRKSE----------------MLE---------------KEQVAHVR---- 49 (364) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHH----------------CCC---------------HHHHHHHH---- T ss_conf 795228784999999889--99899999984688----------------147---------------78999999---- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH----- Q ss_conf 5999988987202446776643000010221783--353002478632426773320022568999999999998----- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH----- 277 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q----- 277 (517) .|..-+... +.|. |.+.|..+.+++ .|||||++|-.+.+. +...+. +.+..+..|+.| T Consensus 50 --~E~~il~~~-----~hp~--Iv~l~~~f~~~~~~ylvmEy~~gGdL~~~--l~~~~~----l~e~~~~~~~~qi~~aL 114 (364) T cd05599 50 --AERDILAEA-----DNPW--VVKLYYSFQDENYLYLIMEYLPGGDMMTL--LMKKDT----FTEEETRFYIAETILAI 114 (364) T ss_pred --HHHHHHHHC-----CCCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCC----CCHHHHHHHHHHHHHHH T ss_conf --999999877-----9998--89399999989999999837889728999--986599----99999999999999999 Q ss_pred --HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHH Q ss_conf --9744866178786228980289535743403121698999999 Q gi|254780623|r 278 --TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFL 320 (517) Q Consensus 278 --i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l 320 (517) +-..|+.|-|.-|.||+++.+|.+-+.|||+...+.......+ T Consensus 115 ~ylH~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~~ 159 (364) T cd05599 115 DSIHKLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEF 159 (364) T ss_pred HHHHHCCEEECCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCH T ss_conf 999757654000442337997999889972677723333455201 No 189 >cd05058 PTKc_Met_Ron Catalytic Domain of the Protein Tyrosine Kinases, Met and Ron. Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca Probab=98.64 E-value=6.1e-07 Score=72.96 Aligned_cols=142 Identities=13% Similarity=0.168 Sum_probs=85.1 Q ss_pred HHHHHHHHHHHHHEECCC-CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 677888865555021288-8723687640310468877778899987532114685433469179999999887888655 Q gi|254780623|r 127 IAAASIAQVHPAVVHDIN-GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL 205 (517) Q Consensus 127 lasASiaQVh~A~l~d~~-~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~ 205 (517) |+.||.|.||+|++.+.+ .+..||||..... -+. + ..-+| T Consensus 3 iG~G~fG~Vykg~~~~~~~~~~~vAvK~l~~~----------------------------~~~-~----------~~~~f 43 (262) T cd05058 3 IGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRI----------------------------TDL-E----------EVEQF 43 (262) T ss_pred EEECCCEEEEEEEEECCCCEEEEEEEEEECCC----------------------------CCH-H----------HHHHH T ss_conf 01189829998999789985899999997876----------------------------797-8----------99999 Q ss_pred HHHHHHHHHHHCCCCCCCCC-CCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCC--CHH---HHHHHHHHHHHHHHH Q ss_conf 99998898720244677664-300001022178335300247863242677332002--256---899999999999897 Q gi|254780623|r 206 RLEAAAFSEMAENTVKDQGF-RVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGH--DLE---RLSVTLVQSFLLHTL 279 (517) Q Consensus 206 ~~Ea~n~~~~~~~~~~~~~v-~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~--d~~---~la~~l~~~~~~qi~ 279 (517) .+|+..+.+++. |.| .+=.+..+-.+...+||||++|-.+.+.- +..+. ..+ .++..++.+ +.-+- T Consensus 44 ~~E~~~l~~l~H-----pNIv~~~g~~~~~~~~~~iv~e~~~~GsL~~~l--~~~~~~~~~~~~~~i~~qia~g-l~yLH 115 (262) T cd05058 44 LKEGIIMKDFSH-----PNVLSLLGICLPSEGSPLVVLPYMKHGDLRNFI--RSETHNPTVKDLIGFGLQVAKG-MEYLA 115 (262) T ss_pred HHHHHHHHHCCC-----CCCCCEEEEEECCCCCEEEEEECCCCCCHHHHH--HCCCCCCCHHHHHHHHHHHHHH-HHHHC T ss_conf 999999996799-----993435689985899569999857999799997--5346798899999999999999-99980 Q ss_pred HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 448661787862289802895357434031216989 Q gi|254780623|r 280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) ..|+.|.|.-|.||+++.++.+-+-|||+...+.+. T Consensus 116 ~~~ivHrDlK~~NiLld~~~~~Kl~DFGla~~~~~~ 151 (262) T cd05058 116 SKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDK 151 (262) T ss_pred CCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCC T ss_conf 199475757824088889996899764655146566 No 190 >cd07833 STKc_CDKL The catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learn Probab=98.64 E-value=5.1e-08 Score=81.31 Aligned_cols=142 Identities=14% Similarity=0.201 Sum_probs=84.4 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-|+.|+-|+||+|+-+. +|+.||||+.+..-. + ....+.+ T Consensus 7 ~~iG~G~fg~V~~~~~~~--~~~~vAiK~~~~~~~---------------------------~-----~~~~~~~----- 47 (288) T cd07833 7 GVVGEGAYGVVLKCRNKA--TGEIVAIKKFKESED---------------------------D-----EDVKKTA----- 47 (288) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCC---------------------------C-----HHHHHHH----- T ss_conf 397416086999999889--998999999872337---------------------------8-----8999999----- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCH---HHHHHHHHHHHHHHHH Q ss_conf 599998898720244677664300001022178--33530024786324267733200225---6899999999999897 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDL---ERLSVTLVQSFLLHTL 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~---~~la~~l~~~~~~qi~ 279 (517) .+|...+..+. .|. |-+.|.-+.++ -.|||||++|-.+..+..- ..+.+. +.++..++.+. .-+- T Consensus 48 -~~Ei~il~~l~-----Hpn--Iv~~~~~f~~~~~~~lVmE~~~~~l~~~~~~~-~~~l~~~~i~~i~~qll~aL-~yLH 117 (288) T cd07833 48 -LREVKVLRQLR-----HEN--IVNLKEAFRRKGRLYLVFEYVERTLLELLEAS-PGGLPPDAVRSYIWQLLQAI-AYCH 117 (288) T ss_pred -HHHHHHHHHCC-----CCC--EEEEEEEEEECCEEEEEEECCCCCHHHHHHHC-CCCCCHHHHHHHHHHHHHHH-HHHH T ss_conf -99999998679-----999--85598998389999999937799759999976-79989999999999999999-9999 Q ss_pred HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 448661787862289802895357434031216989 Q gi|254780623|r 280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) ..|+.|.|..|.||+++++|.+-+.|||....++.. T Consensus 118 ~~~iiHRDiKpeNILl~~~~~iKl~DFG~a~~~~~~ 153 (288) T cd07833 118 SHNIIHRDIKPENILVSESGVLKLCDFGFARALRAR 153 (288) T ss_pred HCCCCCCCCCHHHEEECCCCCEEEEECCCCEECCCC T ss_conf 888461667788878888998898005554002468 No 191 >cd05602 STKc_SGK1 STKc_SGK1: Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is as Probab=98.63 E-value=1.7e-07 Score=77.19 Aligned_cols=137 Identities=20% Similarity=0.199 Sum_probs=79.2 Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67788886555502128887236876403104688777788999875321146854334691799999998878886559 Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR 206 (517) Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~ 206 (517) |+.||-|+||+|+-+. +|+.||+|+.+...- . +- .-...+. T Consensus 3 LG~G~fG~V~la~~~~--t~~~~AiK~i~k~~~----------------~----------~~-----~~~~~~~------ 43 (325) T cd05602 3 IGKGSFGKVLLARHKS--DEKFYAVKVLQKKAI----------------L----------KK-----KEEKHIM------ 43 (325) T ss_pred EEECCCEEEEEEEECC--CCCEEEEEEEEHHHC----------------C----------CH-----HHHHHHH------ T ss_conf 6318495999999889--997999999837880----------------3----------76-----8999999------ Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHH----HHHHHHHHHHHHHHHH Q ss_conf 9998898720244677664300001022178--335300247863242677332002256----8999999999998974 Q gi|254780623|r 207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLE----RLSVTLVQSFLLHTLR 280 (517) Q Consensus 207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~----~la~~l~~~~~~qi~~ 280 (517) .|.+-+ .++. ++|. |.+.|..+.+. -.+||||++|-.+.+. +...+.-.. .++..++.+ +.-+-. T Consensus 44 ~E~~il---l~~l-~hp~--Iv~l~~~f~~~~~lylvmEy~~gGdL~~~--l~~~~~~~e~~a~~~~~qi~~a-L~yLH~ 114 (325) T cd05602 44 SERNVL---LKNV-KHPF--LVGLHFSFQTTDKLYFVLDYINGGELFYH--LQRERCFLEPRARFYAAEIASA-LGYLHS 114 (325) T ss_pred HHHHHH---HHHC-CCCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHHH T ss_conf 999999---9868-9998--89599999989999999957899868999--9753899999999999999999-999998 Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 4866178786228980289535743403121 Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) .|+.|-|.-|.||+++.+|.+.+.|||+... T Consensus 115 ~~IiHRDLKPeNILld~~g~ikL~DFGlak~ 145 (325) T cd05602 115 LNIVYRDLKPENILLDSQGHIVLTDFGLCKE 145 (325) T ss_pred CCCEECCCCCCCCCCCCCCCEEEEECHHHHH T ss_conf 7965323576465637899888710335565 No 192 >cd05624 STKc_MRCK_beta STKc_MRCK_beta: Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. Probab=98.63 E-value=3.2e-08 Score=82.84 Aligned_cols=141 Identities=16% Similarity=0.218 Sum_probs=84.2 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.||-|.||+|+-++ +|+.||+||.+..- .... . -...+.+| T Consensus 7 k~LG~G~fG~V~~a~~~~--t~~~~AiKvi~k~~----------------~~~~-----------~----~~~~~~~E-- 51 (331) T cd05624 7 KVIGRGAFGEVAVVKMKH--TERIYAMKILNKWE----------------MLKR-----------A----ETACFREE-- 51 (331) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECHHH----------------HCCH-----------H----HHHHHHHH-- T ss_conf 896327580999999989--99899999984789----------------1378-----------8----99999999-- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHH-HCCCHHHH----HHHHHHHHHHH Q ss_conf 599998898720244677664300001022178--335300247863242677332-00225689----99999999998 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRA-CGHDLERL----SVTLVQSFLLH 277 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~-~~~d~~~l----a~~l~~~~~~q 277 (517) ..-+... +.+. |.+.|..+.++ -.+||||+.|-.+.+. +.. .+.-.... +..++.+ +.- T Consensus 52 ----~~il~~~-----~h~~--Iv~l~~~f~~~~~~ylvmEy~~gGdL~~~--l~~~~~~l~e~~~~~~~~qil~a-L~y 117 (331) T cd05624 52 ----RNVLVNG-----DCQW--ITTLHYAFQDENYLYLVMDYYVGGDLLTL--LSKFEDRLPEDMARFYIAEMVLA-IHS 117 (331) T ss_pred ----HHHHHHC-----CCCC--EEEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCCHHHHHHHHHHHHHH-HHH T ss_conf ----9999857-----9996--71899999989999999961579889999--98607889899999999999999-999 Q ss_pred HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 9744866178786228980289535743403121698 Q gi|254780623|r 278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) +-..|+.|-|.-|.||+++.+|.+-+.|||....+.. T Consensus 118 lH~~~IiHRDLKPeNILl~~~g~iKL~DFG~a~~~~~ 154 (331) T cd05624 118 IHQLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQ 154 (331) T ss_pred HHHCCEEECCCCCCCCCCCCCCCEEEECCHHHEEECC T ss_conf 8636688422366563325899788731413203246 No 193 >cd05084 PTKc_Fes Catalytic Domain of the Protein Tyrosine Kinase, Fes. Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular Probab=98.63 E-value=2e-07 Score=76.71 Aligned_cols=138 Identities=18% Similarity=0.201 Sum_probs=86.0 Q ss_pred HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 66778888655550212888723687640310468877778899987532114685433469179999999887888655 Q gi|254780623|r 126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL 205 (517) Q Consensus 126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~ 205 (517) =|+.|+-|.||+|+.+. +|+.||||+.+-... . +. +-+| T Consensus 2 ~iG~G~fg~Vy~~~~~~--~~~~vAiK~~~~~~~----~-----------------------------~~------~~~~ 40 (252) T cd05084 2 RIGRGNFGEVFSGRLRA--DNTPVAVKSCRETLP----P-----------------------------EL------KAKF 40 (252) T ss_pred CCCCCCCCEEEEEEECC--CCEEEEEEEECCCCC----H-----------------------------HH------HHHH T ss_conf 07458882899999979--996999999881169----8-----------------------------89------9999 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHH---HHHHHHHHHHHHHHHH Q ss_conf 99998898720244677664300001022178--335300247863242677332002256---8999999999998974 Q gi|254780623|r 206 RLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLE---RLSVTLVQSFLLHTLR 280 (517) Q Consensus 206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~l~~~~~~qi~~ 280 (517) .+|++-+.+++. |.| =+.|.-.+++ -.|||||++|-.+.+.-.-+....+.. .++..++.+ +.-+-. T Consensus 41 ~~E~~il~~l~H-----pnI--v~l~g~~~~~~~~~lv~Ey~~~G~L~~~l~~~~~~l~~~~~~~i~~~ia~g-l~yLH~ 112 (252) T cd05084 41 LMEARILKQYSH-----PNI--VKLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGPRLKVKELIRMAENAAAG-MEYLES 112 (252) T ss_pred HHHHHHHHHCCC-----CCC--CCEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHHH T ss_conf 999999985799-----899--765479988998999997899992899998428999999999999999999-999987 Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHEEC Q ss_conf 48661787862289802895357434031216 Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRL 312 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l 312 (517) .|+.|.|.-|.||+++.+|.+-+.|||+.... T Consensus 113 ~~ivHrDlKp~NiLl~~~~~~kl~DFGla~~~ 144 (252) T cd05084 113 KHCIHRDLAARNCLVTEKNVLKISDFGMSREE 144 (252) T ss_pred CCCCCCCCCHHHEEECCCCEEEEEECCCCEEC T ss_conf 89446873654289879992999555256056 No 194 >cd06634 STKc_TAO2 Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4 Probab=98.63 E-value=1.5e-07 Score=77.74 Aligned_cols=152 Identities=16% Similarity=0.140 Sum_probs=91.5 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH Q ss_conf 89999998676667788886555502128887236876403104688777788999875321146854334691799999 Q gi|254780623|r 115 PIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRA 194 (517) Q Consensus 115 ~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e 194 (517) +++..|... +.|++||-|.||+|+-+. +|+.||||+....-. .+ .+ T Consensus 12 dp~~~y~~l-~~IG~G~fG~Vy~a~~~~--~~~~vAiK~i~~~~~--------------------------~~-~~---- 57 (308) T cd06634 12 DPEKLFSDL-REIGHGSFGAVYFARDVR--NSEVVAIKKMSYSGK--------------------------QS-NE---- 57 (308) T ss_pred CHHHHCEEE-EEECCCCCEEEEEEEECC--CCCEEEEEEECHHHC--------------------------CC-HH---- T ss_conf 957717420-797138881999999889--995999999864542--------------------------47-69---- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHH Q ss_conf 9988788865599998898720244677664300001022178--3353002478632426773320022568---9999 Q gi|254780623|r 195 LEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLER---LSVT 269 (517) Q Consensus 195 ~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~ 269 (517) ..-++.+|++.+.+++. |.| -+.|.-+.++ -.|||||+.|-..+-.. ......+... ++.. T Consensus 58 ------~~~~~~~Ei~il~~l~H-----pnI--V~~~~~~~~~~~~~lVmEy~~G~~~~ll~-~~~~~l~e~~~~~i~~q 123 (308) T cd06634 58 ------KWQDIIKEVRFLQKLRH-----PNT--IQYRGCYLREHTAWLVMEYCLGSASDLLE-VHKKPLQEVEIAAVTHG 123 (308) T ss_pred ------HHHHHHHHHHHHHHCCC-----CCE--EEEEEEEEECCEEEEEEEECCCCHHHHHH-HHCCCCCHHHHHHHHHH T ss_conf ------99999999999997789-----998--46987883288679999924897488999-70589999999999999 Q ss_pred HHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 9999999897448661787862289802895357434031216989 Q gi|254780623|r 270 LVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 270 l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) ++.+ +.-+-..|+.|-|.-|.||+++.+|.+-+.|||+...+.+. T Consensus 124 il~g-L~yLH~~~IIHRDLKP~NILl~~~g~vKl~DFG~A~~~~~~ 168 (308) T cd06634 124 ALQG-LAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA 168 (308) T ss_pred HHHH-HHHHHHCCCCCCCCCCCCEEECCCCCEEEEECCCCEECCCC T ss_conf 9999-99999888634667622079989998999845676344778 No 195 >cd05615 STKc_cPKC_alpha STKc_cPKC_alpha: Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with ce Probab=98.63 E-value=4e-07 Score=74.41 Aligned_cols=139 Identities=19% Similarity=0.220 Sum_probs=81.7 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|++||-|+||+|+-+. +|+.||+|+.+.... . . - . +.. .. T Consensus 6 ~~LG~G~fG~V~~a~~~~--t~~~~AiK~i~k~~~----------------~----~------~-~---~~~-~~----- 47 (323) T cd05615 6 MVLGKGSFGKVMLAERKG--TDELYAIKILKKDVV----------------I----Q------D-D---DVE-CT----- 47 (323) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHC----------------C----C------H-H---HHH-HH----- T ss_conf 795328880999999999--998999999857885----------------3----8------5-7---899-99----- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCC-C---HHHHHHHHHHHHHHHH Q ss_conf 599998898720244677664300001022178--335300247863242677332002-2---5689999999999989 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGH-D---LERLSVTLVQSFLLHT 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~-d---~~~la~~l~~~~~~qi 278 (517) ..|.+.+.... ..+. |.+.|.-+.+. -.+||||++|-.+.+. +...+. + ...++..++.+ +.-+ T Consensus 48 -~~E~~il~~~~----~~p~--Iv~l~~~f~~~~~~ylvmEy~~gGdL~~~--l~~~~~~~e~~~~~~~~qi~~a-L~yL 117 (323) T cd05615 48 -MVEKRVLALQD----KPPF--LTQLHSCFQTVDRLYFVMEYVNGGDLMYH--IQQVGKFKEPQAVFYAAEISVG-LFFL 117 (323) T ss_pred -HHHHHHHHHCC----CCCC--EEEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHH T ss_conf -99999999705----9995--84899999989999999976899827899--9871899999999999999999-9999 Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 744866178786228980289535743403121 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) -..|+.|-|.-|.||+++.+|.+-+.|||++.. T Consensus 118 H~~~IiHRDLKPeNILld~~g~iKL~DFGlak~ 150 (323) T cd05615 118 HRRGIIYRDLKLDNVMLDSEGHIKIADFGMCKE 150 (323) T ss_pred HHCCCEECCCCCCCEEECCCCCEEEEEHHHHHH T ss_conf 988946466774311387899889854466453 No 196 >cd05070 PTKc_Fyn_Yrk Catalytic Domain of the Protein Tyrosine Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r Probab=98.63 E-value=6.3e-08 Score=80.59 Aligned_cols=143 Identities=17% Similarity=0.210 Sum_probs=91.8 Q ss_pred HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 9867--66677888865555021288872368764031046887777889998753211468543346917999999988 Q gi|254780623|r 121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV 198 (517) Q Consensus 121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 198 (517) +.|+ +.|++||-|.||+|+++. +.+||||+.+++-.+ . + T Consensus 6 ~~~~~~~~IG~G~fG~Vy~g~~~~---~~~VAiK~l~~~~~~---------------------------~----~----- 46 (260) T cd05070 6 ESLQLIKKLGNGQFGEVWMGTWNG---NTKVAVKTLKPGTMS---------------------------P----E----- 46 (260) T ss_pred HHEEEEEEEECCCCCEEEEEEECC---CCEEEEEEECCCCCC---------------------------H----H----- T ss_conf 998974798218885899999999---999999998836799---------------------------7----9----- Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC-CCEEEEECCCCCCCCHHHHH-HHHCCCHH---HHHHHHHHH Q ss_conf 78886559999889872024467766430000102217-83353002478632426773-32002256---899999999 Q gi|254780623|r 199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE-RDVITMEWIDGVKISDTEKL-RACGHDLE---RLSVTLVQS 273 (517) Q Consensus 199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st-~~VLvmE~i~G~~i~d~~~l-~~~~~d~~---~la~~l~~~ 273 (517) +|.+|++-+.+++..+ -| +.|.-++. +-.++|||++|-.+.+.-.- ........ .++..++.+ T Consensus 47 -----~f~~E~~il~~l~H~n----Iv---~~~g~~~~~~~~lv~Ey~~~G~L~~~l~~~~~~~~~~~~~~~i~~qia~g 114 (260) T cd05070 47 -----SFLEEAQIMKKLRHDK----LV---QLYAVVSEEPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAG 114 (260) T ss_pred -----HHHHHHHHHHHCCCCC----CC---EEEEEEECCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHH T ss_conf -----9999999998689989----89---49999936975999981799989999862888879999999999999999 Q ss_pred HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 999897448661787862289802895357434031216989 Q gi|254780623|r 274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) +.-+-..|+.|.|.-|.||+++.++.+-+.|||+...++.. T Consensus 115 -L~yLH~~~iiHrDlKp~NiLl~~~~~~KL~DFGla~~~~~~ 155 (260) T cd05070 115 -MAYIERMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDN 155 (260) T ss_pred -HHHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCEECCCC T ss_conf -99985589234504617288878997898565867186789 No 197 >cd07831 STKc_MOK The catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase subfamily. Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and different Probab=98.63 E-value=8.3e-08 Score=79.66 Aligned_cols=138 Identities=16% Similarity=0.300 Sum_probs=81.0 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-|+.||-|.||+|+-.. +|+.||||+.+..... ..+.. T Consensus 5 ~~iG~G~fg~V~~~~~~~--~~~~vAiK~i~~~~~~---------------------------------------~~~~~ 43 (282) T cd07831 5 GKIGEGTFSEVLKAQSRK--TGKYYAIKCMKKHFKS---------------------------------------LEQVN 43 (282) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCCC---------------------------------------HHHHH T ss_conf 597307180999999889--9989999998800288---------------------------------------88999 Q ss_pred HHHHHHHHHHHHCCCCCCCC-CCCHHCCCHHCCC-CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH---- Q ss_conf 59999889872024467766-4300001022178-33530024786324267733200225689999999999989---- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQG-FRVPKIDWNRTER-DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT---- 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~st~-~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi---- 278 (517) ..+|...+.++. +.|. |.+=.++.+-.+. -++||||++|- +-+ .+.... ..+.+..+..|+.|+ T Consensus 44 ~~~Ei~~l~~l~----~hpnIv~~~~~~~~~~~~~~~lv~E~~~~~-l~~--~l~~~~---~~l~e~~~~~~~~Qil~al 113 (282) T cd07831 44 NLREIQAMRRLS----PHPNIIRLIEVLFDRKTGRLALVFELMDMN-LYE--LIKGRK---RPLPEKRVKNYMYQLLKSL 113 (282) T ss_pred HHHHHHHHHHCC----CCCCEEEEEEEEEECCCCEEEEEEECCCHH-HHH--HHHHCC---CCCCHHHHHHHHHHHHHHH T ss_conf 999999998537----999984799999967898799999477278-999--999669---9999999999999999999 Q ss_pred ---HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf ---744866178786228980289535743403121698 Q gi|254780623|r 279 ---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 279 ---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) -..|+.|-|.-|.||+++ ++.+.+.|||.+..+.. T Consensus 114 ~~LH~~~iiHRDiKp~NILl~-~~~~Kl~DFG~a~~~~~ 151 (282) T cd07831 114 DHMHRNGIFHRDIKPENILIK-DDILKLADFGSCRGIYS 151 (282) T ss_pred HHHHHCCEECCCCCCCEEEEE-CCEEEEEECCCCEECCC T ss_conf 999989906130540139970-89089943364400357 No 198 >cd06636 STKc_MAP4K4_6 Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal e Probab=98.63 E-value=1.2e-07 Score=78.49 Aligned_cols=146 Identities=16% Similarity=0.233 Sum_probs=86.3 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.||-|+||+|+-.. +|+.||||+.+..=. + ... T Consensus 22 ~~IG~G~fg~Vy~a~~~~--tg~~~AiK~i~~~~~-----~------------------------------~~~------ 58 (282) T cd06636 22 EVVGNGTYGQVYKGRHVK--TGQLAAIKVMDVTED-----E------------------------------EEE------ 58 (282) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCC-----H------------------------------HHH------ T ss_conf 898328582999999989--997999999814406-----1------------------------------999------ Q ss_pred HHHHHHHHHHHHC--CCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHH-HHHCCCH---HHHHHHHHHHHHHHH Q ss_conf 5999988987202--446776643000010221783353002478632426773-3200225---689999999999989 Q gi|254780623|r 205 LRLEAAAFSEMAE--NTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKL-RACGHDL---ERLSVTLVQSFLLHT 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~--~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l-~~~~~d~---~~la~~l~~~~~~qi 278 (517) +..|.+.+.++.. |....-.+.+.+-....-..=.|||||++|-.+.+.-.. +.....- ..++..++.+ +.-+ T Consensus 59 ~~~E~~~l~~~~~h~niv~~~~~~~~~~~~~~~~~l~lvmE~~~~g~L~~~l~~~~~~~~~e~~i~~~~~qi~~a-L~yl 137 (282) T cd06636 59 IKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRG-LAHL 137 (282) T ss_pred HHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHH T ss_conf 999999999634898188896689970467878889999968999979999987248999999999999999999-9999 Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 744866178786228980289535743403121698 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) -..|+.|-|.-|+||+++.+|.+-+.|||+...++. T Consensus 138 H~~~IiHRDlKp~NILl~~~~~iKi~DFGls~~~~~ 173 (282) T cd06636 138 HAHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDR 173 (282) T ss_pred HHCCCEEEECCHHHEEECCCCCEEEEECCCCEECCC T ss_conf 978916623565777887999899975778747666 No 199 >cd07829 STKc_CDK_like The catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of Probab=98.63 E-value=1.5e-07 Score=77.70 Aligned_cols=140 Identities=16% Similarity=0.199 Sum_probs=84.4 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.||+||-|+||+|+-+. +|+.||+|+.+.+-.+ +.+.... T Consensus 5 ~~iG~G~fg~V~~~~~~~--~~~~vAiK~i~~~~~~--------------------------------~~~~~~~----- 45 (282) T cd07829 5 EKLGEGTYGVVYKARDKK--TGEIVALKKIRLDNEE--------------------------------EGIPSTA----- 45 (282) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHCC--------------------------------HHHHHHH----- T ss_conf 995127691999999989--9979999998321140--------------------------------3668999----- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCH---HHHHHHHHHHHHHHHH Q ss_conf 599998898720244677664300001022178--33530024786324267733200225---6899999999999897 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDL---ERLSVTLVQSFLLHTL 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~---~~la~~l~~~~~~qi~ 279 (517) .+|++.+.++.. |. |.+.|.-+.++ -.+||||++| .+.+.-.....+.+. ..++..++.+. .-+- T Consensus 46 -~rEi~il~~l~h-----~n--Iv~~~~~~~~~~~~~ivmE~~~~-dL~~~l~~~~~~l~~~~~~~~~~Qi~~al-~~LH 115 (282) T cd07829 46 -LREISLLKELKH-----PN--IVKLLDVIYTENKLYLVFEYCEM-DLKKYLDKRPGPLSPNLIKSIMYQLLRGL-AYCH 115 (282) T ss_pred -HHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHHH-HHHH T ss_conf -999999997799-----99--99088898149989999957135-78999983489999999999999999999-9999 Q ss_pred HCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf 4486617878622898028953574340312169 Q gi|254780623|r 280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) ..|+.|.|.-|.||+++.+|.+-+.|||+...++ T Consensus 116 ~~~IiHRDIKpeNILl~~~~~iKl~DFGla~~~~ 149 (282) T cd07829 116 SHRILHRDLKPQNLLINRDGVLKLADFGLARAFG 149 (282) T ss_pred HCCEEEEECCHHHEEECCCCCEEECCCCCCEECC T ss_conf 8995663256676247799998986675533357 No 200 >cd07861 STKc_CDK1_euk The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 Probab=98.63 E-value=4.7e-08 Score=81.59 Aligned_cols=139 Identities=20% Similarity=0.276 Sum_probs=81.2 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.||-|.||+|+-+. +|+.||||+.+....+. . ....+. T Consensus 6 ~~lG~G~fg~V~~~~~~~--t~~~vAvK~i~~~~~~~----------------------------~----~~~~~~---- 47 (285) T cd07861 6 EKIGEGTYGVVYKGRNKK--TGQIVAMKKIRLESEEE----------------------------G----VPSTAI---- 47 (285) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEECCCCCH----------------------------H----HHHHHH---- T ss_conf 790128791999999889--99899999980012344----------------------------6----799999---- Q ss_pred HHHHHHHHHHHHCCCCCCCC-CCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH----- Q ss_conf 59999889872024467766-430000102217833530024786324267733200225689999999999989----- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQG-FRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT----- 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi----- 278 (517) +|...+..++. |. |..=.++.+ .+.-.+||||+.|--.+-....... +.+-+..+..|++|+ T Consensus 48 --~Ei~il~~l~H-----pnIv~~~~~~~~-~~~~~lV~Ey~~~~l~~~l~~~~~~----~~l~~~~i~~~~~ql~~aL~ 115 (285) T cd07861 48 --REISLLKELQH-----PNIVCLQDVLMQ-ESRLYLVFEFLSMDLKKYLDSLPKG----QYMDSMLVKSYLYQILQGIL 115 (285) T ss_pred --HHHHHHHHCCC-----CCEEEEEEEEEE-CCEEEEEEECCCCCHHHHHHHHCCC----CCCCHHHHHHHHHHHHHHHH T ss_conf --99999987799-----998047245701-9979999972688779999874258----98999999999999999999 Q ss_pred --HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf --74486617878622898028953574340312169 Q gi|254780623|r 279 --LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 279 --~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) -..|..|.|.-|.||+++.+|.+-+.|||+...+. T Consensus 116 ylH~~~IiHRDiKP~NIlld~~~~vKl~DFG~a~~~~ 152 (285) T cd07861 116 FCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLARAFG 152 (285) T ss_pred HHHHCCCEECCCCCHHEEECCCCCEEEEECCHHHHCC T ss_conf 9997993647278211688899988980075277629 No 201 >cd05585 STKc_YPK1_like STKc_YPK1_like: Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Probab=98.63 E-value=1.5e-07 Score=77.69 Aligned_cols=135 Identities=21% Similarity=0.290 Sum_probs=82.9 Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67788886555502128887236876403104688777788999875321146854334691799999998878886559 Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR 206 (517) Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~ 206 (517) |+.||-|+||+|+-++ +|+.||+|+.+..- +.++ . +. .. +. T Consensus 1 iG~G~fG~V~~a~~~~--t~~~~AiK~i~k~~----------------~~~~-----------~---~~-~~------~~ 41 (312) T cd05585 1 IGKGSFGKVMQVRKKD--TQRIYALKTIRKAH----------------IVSR-----------S---EV-TH------TL 41 (312) T ss_pred CCCCCCEEEEEEEECC--CCCEEEEEEECHHH----------------CCCH-----------H---HH-HH------HH T ss_conf 9668082989999889--99899999983788----------------5698-----------9---99-99------99 Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHC-CCH---HHHHHHHHHHHHHHHHH Q ss_conf 99988987202446776643000010221783--3530024786324267733200-225---68999999999998974 Q gi|254780623|r 207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACG-HDL---ERLSVTLVQSFLLHTLR 280 (517) Q Consensus 207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~-~d~---~~la~~l~~~~~~qi~~ 280 (517) +|...+.++. .|.| -+.|..+.+++ .+||||++|-.+.+. +...+ .+- +.++..++.+ +.-+-. T Consensus 42 ~E~~il~~l~-----hp~I--v~l~~~f~~~~~~ylvmEy~~gG~L~~~--l~~~~~l~e~~~~~~~~qil~a-L~ylH~ 111 (312) T cd05585 42 AERTVLAQVN-----CPFI--VPLKFSFQSPEKLYFVLAFINGGELFHH--LQKEGRFDLSRARFYTAELLCA-LECLHK 111 (312) T ss_pred HHHHHHHHCC-----CCCC--CEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHHH T ss_conf 9999998679-----9988--9499999989999999966799888999--9875999999999999999999-999998 Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHE Q ss_conf 486617878622898028953574340312 Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITG 310 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg 310 (517) .|+.|-|.-|.||+++.+|.+.+.|||+.. T Consensus 112 ~~IiHRDLKPeNILl~~~g~iKL~DFGla~ 141 (312) T cd05585 112 FNVIYRDLKPENILLDYQGHIALCDFGLCK 141 (312) T ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCHHH T ss_conf 895057676322322588978750122211 No 202 >cd05062 PTKc_IGF-1R Catalytic Domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh Probab=98.63 E-value=8.6e-08 Score=79.56 Aligned_cols=145 Identities=16% Similarity=0.218 Sum_probs=90.9 Q ss_pred HHHH--HHHHHHHHHHHHHHHEEC---CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH Q ss_conf 9867--666778888655550212---88872368764031046887777889998753211468543346917999999 Q gi|254780623|r 121 CEFD--DPIAAASIAQVHPAVVHD---INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL 195 (517) Q Consensus 121 ~~fd--ePlasASiaQVh~A~l~d---~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 195 (517) +.++ +.|++||-|.||+|+.+. +.++.+||||+.+... T Consensus 6 e~~~i~~~lG~G~fg~Vykg~~~~~~~~~~~~~vAvK~l~~~~------------------------------------- 48 (277) T cd05062 6 EKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAA------------------------------------- 48 (277) T ss_pred HHEEEEEEEECCCCEEEEEEEECCCCCCCCCCEEEEEEECCCC------------------------------------- T ss_conf 9948756983188809998876485347888589999977565------------------------------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHH-HH-----HCC---CHH Q ss_conf 9887888655999988987202446776643000010221--783353002478632426773-32-----002---256 Q gi|254780623|r 196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKL-RA-----CGH---DLE 264 (517) Q Consensus 196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l-~~-----~~~---d~~ 264 (517) ...+..+|.+|++.+.+++.. . |=+.|.-.+ .+..+||||++|-.+.+.-.- .. .+. ..+ T Consensus 49 --~~~~~~~f~~E~~~l~~l~h~-----n--Iv~l~g~~~~~~~~~iv~E~~~~G~L~~~l~~~~~~~~~~~~~~~~~~~ 119 (277) T cd05062 49 --SMRERIEFLNEASVMKEFNCH-----H--VVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLK 119 (277) T ss_pred --CHHHHHHHHHHHHHHHHCCCC-----C--EEEEEEEEEECCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCHHHH T ss_conf --857899999999999877999-----8--8179999998997799999357990999998606300057534756599 Q ss_pred ---HHHHHHHH--HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf ---89999999--999989744866178786228980289535743403121698 Q gi|254780623|r 265 ---RLSVTLVQ--SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 265 ---~la~~l~~--~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) .++..++. .|++ ..|+.|.|.-|.||+++.|+.+-+-|||+...+.+ T Consensus 120 ~~l~i~~qia~gl~yLH---~~~ivHrDLK~~NiLl~~~~~~Kl~DFGla~~~~~ 171 (277) T cd05062 120 KMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYE 171 (277) T ss_pred HHHHHHHHHHHHHHHHH---HCCCCCCCCCCCEEEECCCCCEEEEECCCCEECCC T ss_conf 99999999999999986---38945365661317888999299830525506566 No 203 >cd06632 STKc_MEKK1_plant Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. ME Probab=98.62 E-value=6.5e-08 Score=80.51 Aligned_cols=140 Identities=17% Similarity=0.235 Sum_probs=88.9 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-|++|+-|-||+|+-+. +|+.||+|+.+=.-. .. .-.+.+++ T Consensus 6 ~~iG~G~fg~Vy~~~~~~--~~~~vAiK~i~~~~~---------------------~~----~~~~~~~~---------- 48 (258) T cd06632 6 ELLGSGSFGSVYEGLNLD--DGDFFAVKEVSLADD---------------------GQ----TGQEAVKQ---------- 48 (258) T ss_pred CEEECCCCEEEEEEEECC--CCCEEEEEEEECCCC---------------------CC----CCHHHHHH---------- T ss_conf 185117581999999889--998999999850102---------------------21----12999999---------- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH---- Q ss_conf 59999889872024467766430000102217--833530024786324267733200225689999999999989---- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT---- 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi---- 278 (517) +.+|++.+.++.. |. |.+.|.-+.+ .-.+||||++|-.+.+.- +..+ .+.+..+..|+.|+ T Consensus 49 ~~~Ei~il~~l~H-----pn--Iv~l~~~~~~~~~~~ivmEy~~~G~L~~~l--~~~~----~l~~~~~~~~~~qi~~aL 115 (258) T cd06632 49 LEQEIALLSKLQH-----PN--IVQYLGTEREEDNLYIFLELVPGGSLAKLL--KKYG----SFPEPVIRLYTRQILLGL 115 (258) T ss_pred HHHHHHHHHHCCC-----CC--CCCEEEEEEECCEEEEEEECCCCCCHHHHH--HHCC----CCCHHHHHHHHHHHHHHH T ss_conf 9999999986799-----89--893999998899999999786979299999--8749----999999999999999999 Q ss_pred ---HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf ---744866178786228980289535743403121698 Q gi|254780623|r 279 ---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 279 ---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) -..|+.|-|.-|.||+++.+|++.+.|||+...++. T Consensus 116 ~ylH~~~iiHRDlKp~NiLi~~~~~iKl~DFGla~~~~~ 154 (258) T cd06632 116 EYLHDRNTVHRDIKGANILVDTNGVVKLADFGMAKQVVE 154 (258) T ss_pred HHHHHCCCEEECCCHHHEEECCCCCEEECCCCCCEECCC T ss_conf 999988886500474664788999989853787167557 No 204 >cd05050 PTKc_Musk Catalytic Domain of the Protein Tyrosine Kinase, Muscle-specific kinase. Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M Probab=98.62 E-value=9.3e-08 Score=79.29 Aligned_cols=143 Identities=18% Similarity=0.272 Sum_probs=87.9 Q ss_pred HHHHHHHHHHHHHHHEE---CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 66677888865555021---288872368764031046887777889998753211468543346917999999988788 Q gi|254780623|r 125 DPIAAASIAQVHPAVVH---DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKM 201 (517) Q Consensus 125 ePlasASiaQVh~A~l~---d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 201 (517) +-|++||-|.||+|+.+ ++..+..||||+..+.. .-.. T Consensus 11 ~~iG~G~fG~Vy~a~~~g~~~~~~~~~vAvK~l~~~~---------------------------------------~~~~ 51 (288) T cd05050 11 RDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA---------------------------------------SADM 51 (288) T ss_pred EEEECCCCCEEEEEEECCCCCCCCCEEEEEEEECCCC---------------------------------------CHHH T ss_conf 3982287818999997586458857599999988567---------------------------------------9789 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHCCC--HHCCCCEEEEECCCCCCCCHHHHHHH----------------HCCC- Q ss_conf 8655999988987202446776643000010--22178335300247863242677332----------------0022- Q gi|254780623|r 202 EMDLRLEAAAFSEMAENTVKDQGFRVPKIDW--NRTERDVITMEWIDGVKISDTEKLRA----------------CGHD- 262 (517) Q Consensus 202 ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~--~~st~~VLvmE~i~G~~i~d~~~l~~----------------~~~d- 262 (517) +-+|.+|++-+.+++. |.| =+.|. .......+||||+++-.+.+.-.-.. .+.+ T Consensus 52 ~~~f~~E~~il~~l~H-----pNI--V~~~g~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (288) T cd05050 52 QADFQREAALMAEFDH-----PNI--VKLLGVCAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNP 124 (288) T ss_pred HHHHHHHHHHHHHCCC-----CCC--CCEEEEEEECCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 9999999999985799-----988--337679966997699999168990999998528542100011221000145777 Q ss_pred -------HHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf -------5689999999999989744866178786228980289535743403121698 Q gi|254780623|r 263 -------LERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 263 -------~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) .-.++..++.. +.-+-..|+.|.|.-|.|++++.++.+-+-|||....+.. T Consensus 125 ~~l~~~~~l~i~~~ia~g-l~yLH~~~ivHrDlKp~NiLl~~~~~~Kl~DFGls~~~~~ 182 (288) T cd05050 125 LPLSCTEQLCIAKQVAAG-MAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYS 182 (288) T ss_pred CCCCHHHHHHHHHHHHHH-HHHHHHCCEECCCCCCCEEEECCCCCEEEEECCCCEECCC T ss_conf 888999999999999999-9998639905267660668987999888600525404366 No 205 >cd05616 STKc_cPKC_beta STKc_cPKC_beta: Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicin Probab=98.62 E-value=4.7e-07 Score=73.84 Aligned_cols=139 Identities=19% Similarity=0.214 Sum_probs=80.4 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.||-|+||.|+-+. +|+.||||+.+..... .. ++.. .. T Consensus 6 k~LG~G~fG~V~la~~~~--t~~~~AiK~i~k~~~~--~~----------------------------~~~~-~~----- 47 (323) T cd05616 6 MVLGKGSFGKVMLAERKG--TDELYAIKILKKDVVI--QD----------------------------DDVE-CT----- 47 (323) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECHHHCC--CH----------------------------HHHH-HH----- T ss_conf 795227680999999999--9989999998278843--84----------------------------7899-99----- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCC-CH---HHHHHHHHHHHHHHH Q ss_conf 599998898720244677664300001022178--335300247863242677332002-25---689999999999989 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGH-DL---ERLSVTLVQSFLLHT 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~-d~---~~la~~l~~~~~~qi 278 (517) ..|.+-+.... ..+. |.+.|.-+.+. -.+||||++|-.+.+. +...+. +- ..++..++.+ +.-+ T Consensus 48 -~~E~~il~~~~----~~p~--Iv~l~~~f~~~~~lylVmEy~~gGdL~~~--l~~~~~l~e~~~~~~~~qi~~a-L~yL 117 (323) T cd05616 48 -MVEKRVLALSG----KPPF--LTQLHSCFQTMDRLYFVMEYVNGGDLMYQ--IQQVGRFKEPHAVFYAAEIAIG-LFFL 117 (323) T ss_pred -HHHHHHHHHHC----CCCE--EEEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHH T ss_conf -99999999717----9992--85999999989999999958899808999--9981999989999999999999-9999 Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 744866178786228980289535743403121 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) -..|+.|-|.-|.||+++.+|.+-+.|||+... T Consensus 118 H~~~IiHRDLKPeNILl~~~g~iKL~DFGlak~ 150 (323) T cd05616 118 HSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKE 150 (323) T ss_pred HHCCCCCCCCCCCCEEECCCCCEEEEEHHHHHH T ss_conf 877975025477661476899778853215444 No 206 >cd07873 STKc_PCTAIRE1 The catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and ma Probab=98.62 E-value=7.4e-08 Score=80.04 Aligned_cols=133 Identities=20% Similarity=0.308 Sum_probs=78.4 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.||-|+||+|.-+. +|+.||||+.+-.-. .. ..... T Consensus 12 ~~iG~G~fg~V~~~~~~~--t~~~vAiK~i~~~~~---------------------~~------------~~~~~----- 51 (301) T cd07873 12 DKLGEGTYATVYKGRSKL--TDNLVALKEIRLEHE---------------------EG------------APCTA----- 51 (301) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHHC---------------------CC------------HHHHH----- T ss_conf 387237692999999889--998999999854332---------------------31------------38899----- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH---- Q ss_conf 599998898720244677664300001022178--33530024786324267733200225689999999999989---- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT---- 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi---- 278 (517) .+|.+.+.+++. |.| =+.|.-+.++ -.|||||++|. +.+ .++..+. .+-+.-++.|++|+ T Consensus 52 -~~Ei~il~~l~H-----pnI--v~l~~~~~~~~~~~lV~Ey~~~~-L~~--~l~~~~~---~~~~~~i~~~~~Qll~al 117 (301) T cd07873 52 -IREVSLLKDLKH-----ANI--VTLHDIIHTEKSLTLVFEYLDKD-LKQ--YLDDCGN---SINMHNVKLFLFQLLRGL 117 (301) T ss_pred -HHHHHHHHHCCC-----CCC--CEEEEEEEECCEEEEEEECCCHH-HHH--HHHHCCC---CCCHHHHHHHHHHHHHHH T ss_conf -999999987799-----997--64989994499789999636666-999--9997289---899999999999999999 Q ss_pred ---HHCCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf ---744866178786228980289535743403121 Q gi|254780623|r 279 ---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 279 ---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) -..|+.|.|.-|.||+++.+|.+-+.|||+... T Consensus 118 ~ylH~~gIiHRDiKPeNILl~~~~~iKl~DFGla~~ 153 (301) T cd07873 118 NYCHRRKVLHRDLKPQNLLINERGELKLADFGLARA 153 (301) T ss_pred HHHHHCCCEECCCCHHHEEECCCCCEEEEECCCCHH T ss_conf 999978907642761335888999889997275031 No 207 >cd07835 STKc_CDK1_like The catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1 Probab=98.62 E-value=1e-07 Score=78.95 Aligned_cols=136 Identities=20% Similarity=0.288 Sum_probs=79.7 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|++||-|.||+|+-+. +|+.||||+.+-.-.+ +....... T Consensus 5 ~~iG~G~fg~V~~a~~~~--t~~~vAiK~i~~~~~~--------------------------------~~~~~~~~---- 46 (283) T cd07835 5 EKIGEGTYGVVYKARDKL--TGEIVALKKIRLETED--------------------------------EGVPSTAI---- 46 (283) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEECCCCC--------------------------------HHHHHHHH---- T ss_conf 794137182999999889--9979999998100134--------------------------------56799999---- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHH-HHHHHHCCCHHHHHHHHHHHHHHHH--- Q ss_conf 599998898720244677664300001022--1783353002478632426-7733200225689999999999989--- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDT-EKLRACGHDLERLSVTLVQSFLLHT--- 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~-~~l~~~~~d~~~la~~l~~~~~~qi--- 278 (517) +|.+.++.++. |. |-+.|.-+ .+.-.+||||++| .+.+. ......+ +.+..+..|+.|+ T Consensus 47 --~Ei~il~~l~h-----pn--Iv~~~~~~~~~~~~~iv~E~~~~-~L~~~~~~~~~~~-----~~~~~~~~~~~qil~a 111 (283) T cd07835 47 --REISLLKELNH-----PN--IVRLLDVVHSENKLYLVFEFLDL-DLKKYMDSSPLTG-----LDPPLIKSYLYQLLQG 111 (283) T ss_pred --HHHHHHHHCCC-----CC--EEEEEEEEEECCEEEEEEECCCC-CHHHHHHHCCCCC-----CCHHHHHHHHHHHHHH T ss_conf --99999987799-----99--83063546009989999976898-7899998635789-----8999999999999999 Q ss_pred ----HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf ----74486617878622898028953574340312169 Q gi|254780623|r 279 ----LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 279 ----~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) -..|+.|-|.-|.||+++.+|.+-+.|||+...+. T Consensus 112 l~ylH~~~IiHRDiKp~NILl~~~~~iKl~DFGla~~~~ 150 (283) T cd07835 112 IAYCHSHRVLHRDLKPQNLLIDREGALKLADFGLARAFG 150 (283) T ss_pred HHHHHHCCCEECCCCCCCEEECCCCCEEEEECCCHHHCC T ss_conf 999997893664077200688899988998767322148 No 208 >cd06644 STKc_STK10_LOK Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Probab=98.61 E-value=2.6e-07 Score=75.83 Aligned_cols=139 Identities=17% Similarity=0.169 Sum_probs=86.3 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-|++||-|.||+|+-+. +|+.||+|+....-.+ +. -+ T Consensus 18 ~~lG~G~fg~Vy~a~~~~--t~~~~A~K~i~~~~~~---------------------------------~~-------~~ 55 (292) T cd06644 18 GELGDGAFGKVYKAKNKE--TGALAAAKVIETKSEE---------------------------------EL-------ED 55 (292) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCHH---------------------------------HH-------HH T ss_conf 698118891999999889--9969999998717999---------------------------------99-------99 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHHHCCCH---HHHHHHHHHHHHHHHH Q ss_conf 5999988987202446776643000010221--7833530024786324267733200225---6899999999999897 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRACGHDL---ERLSVTLVQSFLLHTL 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~~~~d~---~~la~~l~~~~~~qi~ 279 (517) +.+|.+.+..+. .|.| -+.|.-+. +.-.+||||++|-.+.+.-.-...+.+- ..++..++.+ +.-+- T Consensus 56 ~~~Ei~il~~l~-----HpnI--v~l~~~~~~~~~~~ivmE~~~gg~L~~~~~~~~~~l~e~~~~~i~~qil~a-l~ylH 127 (292) T cd06644 56 YMVEIEILATCN-----HPYI--VKLLGAFYWDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVICRQMLEA-LQYLH 127 (292) T ss_pred HHHHHHHHHHCC-----CCCC--CCEEEEEEECCEEEEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH-HHHHH T ss_conf 999999998779-----9999--909899998998999998179983999999717998999999999999999-99999 Q ss_pred HCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf 4486617878622898028953574340312169 Q gi|254780623|r 280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) ..|+.|-|.-|.||+++.+|.+-+.|||+..... T Consensus 128 ~~~IiHRDlKp~NILl~~~g~vKl~DFGls~~~~ 161 (292) T cd06644 128 SMKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNV 161 (292) T ss_pred HCCCEECCCCHHHEEECCCCCEEEEECCCCEECC T ss_conf 7991644487675888799989996688864478 No 209 >cd07843 STKc_CDC2L1 The catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1 subfamily. Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CD Probab=98.61 E-value=1.4e-07 Score=77.81 Aligned_cols=141 Identities=14% Similarity=0.228 Sum_probs=84.3 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-|++|+-|+||+|.-+. +|+.||+|+.+-.-. -+.+.... T Consensus 11 ~~iG~G~fg~V~~~~~~~--t~~~vAiK~i~~~~~--------------------------------~~~~~~~~----- 51 (293) T cd07843 11 NRIEEGTYGVVYRARDKK--TGEIVALKKLKMEKE--------------------------------KEGFPITS----- 51 (293) T ss_pred EEEECCCCCEEEEEEECC--CCCEEEEEEEECHHH--------------------------------HHHHHHHH----- T ss_conf 783136280999999889--998999999800042--------------------------------20417889----- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC-CCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH----- Q ss_conf 5999988987202446776643000010221-7833530024786324267733200225689999999999989----- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRT-ERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT----- 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s-t~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi----- 278 (517) .+|.+.+..++. ..-|.+-+++-.-. +.-.+||||++| .+.+. +... +..+...-+..+++|+ T Consensus 52 -~rEi~~l~~l~h----pnIv~~~~~~~~~~~~~~~lvmE~~~~-dl~~~--~~~~---~~~~~~~~i~~i~~qil~aL~ 120 (293) T cd07843 52 -LREINILLKLQH----PNIVTVKEVVVGSNLDKIYMVMEYVEH-DLKSL--METM---KQPFLQSEVKTLMLQLLSGVA 120 (293) T ss_pred -HHHHHHHHHCCC----CCEEEEEEEEECCCCCEEEEEEECCCC-CHHHH--HHHC---CCCCCHHHHHHHHHHHHHHHH T ss_conf -999999997689----994158887605889879999937888-78999--9974---899999999999999999999 Q ss_pred --HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf --7448661787862289802895357434031216989 Q gi|254780623|r 279 --LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 279 --~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) -..|..|-|.-|.||+++.+|++.+.|||+...+... T Consensus 121 yLH~~~IiHRDiKPeNILl~~~~~vKi~DFG~a~~~~~~ 159 (293) T cd07843 121 HLHDNWILHRDLKTSNLLLNNRGILKICDFGLAREYGSP 159 (293) T ss_pred HHHHCCEEEEECCHHHEEECCCCCEEEECCCCHHHCCCC T ss_conf 999889357256756657878998899224753342887 No 210 >cd05088 PTKc_Tie2 Catalytic Domain of the Protein Tyrosine Kinase, Tie2. Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A Probab=98.61 E-value=7.5e-07 Score=72.27 Aligned_cols=145 Identities=14% Similarity=0.162 Sum_probs=83.0 Q ss_pred HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 99867--6667788886555502128887236876403104688777788999875321146854334691799999998 Q gi|254780623|r 120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ 197 (517) Q Consensus 120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 197 (517) |..|+ +.|+.||-|+||+|+.+..+....||||..+....+ + T Consensus 6 ~~d~~~~~~IG~G~fG~Vyk~~~~~~g~~~~vavK~~~~~~~~----~-------------------------------- 49 (303) T cd05088 6 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASK----D-------------------------------- 49 (303) T ss_pred HHHCEEEEEEEECCCCEEEEEEECCCCEEEEEEEEEECCCCCH----H-------------------------------- T ss_conf 7995887799507784999999938997999999997844484----7-------------------------------- Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHH---------------HC Q ss_conf 8788865599998898720244677664300001022--178335300247863242677332---------------00 Q gi|254780623|r 198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRA---------------CG 260 (517) Q Consensus 198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~---------------~~ 260 (517) ..-+|.+|++-+.++.+ .|.|. +.|.-. ...-.|||||++|-.+.+.-.-.. .. T Consensus 50 ---~~~~f~~E~~il~~l~~----HpnIv--~l~g~~~~~~~~~lv~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~~ 120 (303) T cd05088 50 ---DHRDFAGELEVLCKLGH----HPNII--NLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTAST 120 (303) T ss_pred ---HHHHHHHHHHHHHHCCC----CCCEE--EEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCCCHHHCCCCCCC T ss_conf ---89999999999986269----99888--8988983289789999747998599999754665556201002354567 Q ss_pred CCHH---HHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHE Q ss_conf 2256---8999999999998974486617878622898028953574340312 Q gi|254780623|r 261 HDLE---RLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITG 310 (517) Q Consensus 261 ~d~~---~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg 310 (517) .+.. .++..++.. +.-+-..|+.|.|.-|.||+++.++.+-+-|||+.. T Consensus 121 l~~~~~l~i~~qIa~g-l~yLH~~~IiHRDLKp~NILl~~~~~~KI~DFGls~ 172 (303) T cd05088 121 LSSQQLLHFAADVARG-MDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSR 172 (303) T ss_pred CCHHHHHHHHHHHHHH-HHHHHCCCEEECCCCHHHEEECCCCCEEEEECCCCC T ss_conf 8999999999999999-998711986745577411788899978998267786 No 211 >cd05056 PTKc_FAK Catalytic Domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase. Protein Tyrosine Kinase (PTK) family; Focal Adhesion kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions Probab=98.61 E-value=2e-07 Score=76.64 Aligned_cols=144 Identities=19% Similarity=0.151 Sum_probs=88.0 Q ss_pred HHHHHHHHHHHHHHHHHEECCCCCC--EEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 6766677888865555021288872--36876403104688777788999875321146854334691799999998878 Q gi|254780623|r 123 FDDPIAAASIAQVHPAVVHDINGYR--KVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTK 200 (517) Q Consensus 123 fdePlasASiaQVh~A~l~d~~~g~--~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~ 200 (517) +.+.|++||-|.||+|+.+..+ |+ .||||+.+........ T Consensus 10 l~~~iG~G~fG~Vy~~~~~~~~-~~~~~vavK~~~~~~~~~~~------------------------------------- 51 (270) T cd05056 10 LGRCIGEGQFGDVYQGVYMSPE-NEKIAVAVKTCKNCTSPSVR------------------------------------- 51 (270) T ss_pred EEEEEEECCCCEEEEEEEECCC-CEEEEEEEEEECCCCCHHHH------------------------------------- T ss_conf 7119940778799999998689-80899999996601798999------------------------------------- Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHHHHH Q ss_conf 88655999988987202446776643000010221--783353002478632426773320022568---9999999999 Q gi|254780623|r 201 MEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQSFL 275 (517) Q Consensus 201 ~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~~~~ 275 (517) =.|.+|++-+.+++. |.|. +.|. .| ++-.|||||++|-.+.+.-.-.....+... ++..++.+ + T Consensus 52 --~~~~~E~~~l~~l~H-----pnIv--~~~g-~~~~~~~~ivmE~~~~G~L~~~l~~~~~~l~~~~~~~~~~qia~g-l 120 (270) T cd05056 52 --EKFLQEAYIMRQFDH-----PHIV--KLIG-VITENPVWIVMELAPLGELRSYLQVNKYSLDLASLILYSYQLSTA-L 120 (270) T ss_pred --HHHHHHHHHHHHCCC-----CCCC--CEEE-EEEECCEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-H T ss_conf --999999999986899-----8988--4999-997498799999249988999998668999999999999999999-9 Q ss_pred HHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 9897448661787862289802895357434031216989 Q gi|254780623|r 276 LHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 276 ~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) .-+-..|+.|.|.-|.||+++.++.+-+.|||+...+++. T Consensus 121 ~ylH~~~iiHrDlKp~NiLl~~~~~vKl~DFGls~~~~~~ 160 (270) T cd05056 121 AYLESKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDE 160 (270) T ss_pred HHHHHCCCCCCCCCCCCEEECCCCCEEEEECCCCEECCCC T ss_conf 9997499635757823230479997899956888686788 No 212 >cd05623 STKc_MRCK_alpha STKc_MRCK_alpha: Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway. Probab=98.61 E-value=3.5e-08 Score=82.60 Aligned_cols=140 Identities=16% Similarity=0.223 Sum_probs=83.7 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.|+-|.||+|+.+. +|+.||+|+.+..- ...+ . -... T Consensus 7 ~~IG~G~fG~V~~a~~k~--t~~~~AiK~i~k~~----------------~~~~-----------~----~~~~------ 47 (332) T cd05623 7 KVIGRGAFGEVAVVKLKN--ADKVFAMKILNKWE----------------MLKR-----------A----ETAC------ 47 (332) T ss_pred EEEECCCCCEEEEEEECC--CCCEEEEEEECHHH----------------HCCH-----------H----HHHH------ T ss_conf 786217370999999989--99799999983789----------------2478-----------9----9999------ Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHH-HC-CCH---HHHHHHHHHHHHHH Q ss_conf 599998898720244677664300001022178--335300247863242677332-00-225---68999999999998 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRA-CG-HDL---ERLSVTLVQSFLLH 277 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~-~~-~d~---~~la~~l~~~~~~q 277 (517) +..|...+... +.+. |.+.|..+.++ -.|||||+.|-.+.+. +.. .+ .+- +.++..++.+ +.- T Consensus 48 ~~~E~~il~~~-----~hp~--Iv~l~~~f~~~~~~ylvmEy~~gGdL~~~--l~~~~~~l~e~~~~~~~~qi~~a-L~y 117 (332) T cd05623 48 FREERDVLVNG-----DNQW--ITTLHYAFQDENNLYLVMDYYVGGDLLTL--LSKFEDRLPEDMARFYLAEMVIA-IDS 117 (332) T ss_pred HHHHHHHHHHC-----CCCC--EEEEEEEEEECCEEEEEEEECCCCCHHHH--HHHCCCCCCHHHHHHHHHHHHHH-HHH T ss_conf 99999999858-----9997--66699999989999999994479738999--98606889999999999999999-999 Q ss_pred HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf 974486617878622898028953574340312169 Q gi|254780623|r 278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) +-..|+.|-|.-|.||+++.+|.+-+.|||....+. T Consensus 118 lH~~~IiHRDLKPeNILl~~~g~iKL~DFG~a~~~~ 153 (332) T cd05623 118 VHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLM 153 (332) T ss_pred HHHCCCEECCCCCCCCCCCCCCCEEEECCHHHHEEC T ss_conf 998797531125766033589988983000321003 No 213 >PTZ00266 NIMA-related protein kinase; Provisional Probab=98.61 E-value=1.2e-07 Score=78.34 Aligned_cols=146 Identities=15% Similarity=0.228 Sum_probs=81.9 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.||.|+||+|+-+. +|+.||+|+..-.- +. +.... . T Consensus 15 e~IG~GsFG~VylAr~k~--Tg~~vAiK~I~~~~---------------------------l~-----~k~r~------~ 54 (484) T PTZ00266 15 NRIGSGRFGEVFLVRHKH--TGQLFCWKVVAYKG---------------------------LS-----DKEKQ------Q 54 (484) T ss_pred EEECCCCCEEEEEEEECC--CCCEEEEEEECHHH---------------------------CC-----HHHHH------H T ss_conf 596247782999999878--99899999975566---------------------------79-----99999------9 Q ss_pred HHHHHHHHHHHHCCCCCCCC-CCCHHCCCHHCCC-CEEEEECCCCCCCCHHH-HH-HHHC-CCHH---HHHHHHHHH--H Q ss_conf 59999889872024467766-4300001022178-33530024786324267-73-3200-2256---899999999--9 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQG-FRVPKIDWNRTER-DVITMEWIDGVKISDTE-KL-RACG-HDLE---RLSVTLVQS--F 274 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~st~-~VLvmE~i~G~~i~d~~-~l-~~~~-~d~~---~la~~l~~~--~ 274 (517) +.+|.+.+..++. |. |..=..|.+-++. -.|||||++|-.+.+.- .. ...+ .+.+ .++..++.+ | T Consensus 55 l~~Ei~ILk~L~H-----PnIVk~yd~f~d~~~~~lyIVMEYc~GGDL~~~I~~~~~~~~~l~E~~i~~i~~QLl~AL~y 129 (484) T PTZ00266 55 LVMEVNVIRELNH-----PNIVRYIDRMIDKRRQLLYILMEYCDAGDLGENMRQFYKHYKLVNEQVIFDIALQLIFALAY 129 (484) T ss_pred HHHHHHHHHHCCC-----CCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH T ss_conf 9999999997799-----99973889999479998999994889981899999998606899999999999999999999 Q ss_pred HHHHH----HCCEECCCCCCCEEEEECCCC--------EEEEECCHHEECCHH Q ss_conf 99897----448661787862289802895--------357434031216989 Q gi|254780623|r 275 LLHTL----RDGFFHADLHPGNLFVDSKGY--------IVAVDMGITGRLSKR 315 (517) Q Consensus 275 ~~qi~----~~GfFHaDPHpGNi~v~~dg~--------i~~lDfG~vg~l~~~ 315 (517) +++.- ..|+.|-|.-|.||+++.++. +-+.|||+...++.. T Consensus 130 LH~~~~~~~s~~IIHRDLKPeNILL~~~~~~dg~~~~viKL~DFGLAk~l~~~ 182 (484) T PTZ00266 130 CHNCKSGTKTGKVLHRDLKPQNILLSTKHNKDGNKSYVCKIGDFGLCRQIGMS 182 (484) T ss_pred HHHCCCCCCCCCEECCCCCHHHEEECCCCCCCCCCCCCEEEEECCCCEECCCC T ss_conf 97254434558876178877987853576656776750689765675157998 No 214 >cd05582 STKc_RSK_N STKc_RSK_N: Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein ki Probab=98.61 E-value=1.4e-07 Score=77.91 Aligned_cols=138 Identities=17% Similarity=0.246 Sum_probs=80.6 Q ss_pred HHHHHHHHHHHHHHEE-CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 6677888865555021-288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 126 PIAAASIAQVHPAVVH-DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 126 PlasASiaQVh~A~l~-d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) .|+.||-|+||.|+-. +.++|+.+|+|+.+...-. .. + +.. T Consensus 3 ~iG~G~fG~Vylv~~~~~~~tg~~~AiK~i~k~~~~--~~-------------------------~-----------~~~ 44 (318) T cd05582 3 VLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLK--VR-------------------------D-----------RVR 44 (318) T ss_pred EECCCCCCEEEEEEEEECCCCCCEEEEEEECHHHCC--HH-------------------------H-----------HHH T ss_conf 750189808999997000788918999998357668--67-------------------------8-----------999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCC-CH---HHHHHHHHHHHHHHH Q ss_conf 599998898720244677664300001022178--335300247863242677332002-25---689999999999989 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGH-DL---ERLSVTLVQSFLLHT 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~-d~---~~la~~l~~~~~~qi 278 (517) ..+|.+-+.++. +|. |-+.|..+.++ -.|||||++|-.+.+. +...+. +. +..+..++.+ +.-+ T Consensus 45 ~~~E~~il~~l~-----Hp~--Iv~l~~~f~~~~~lylvmEy~~gGdL~~~--l~~~~~l~e~~~~~~~~qi~~a-L~yl 114 (318) T cd05582 45 TKMERDILAEVN-----HPF--IVKLHYAFQTEGKLYLILDFLRGGDLFTR--LSKEVMFTEEDVKFYLAELALA-LDHL 114 (318) T ss_pred HHHHHHHHHHCC-----CCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHCCCCCCHHHHHHHHHHHHHH-HHHH T ss_conf 999999998779-----998--89199999989989999955899848776--3016899999999999999999-9999 Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 744866178786228980289535743403121 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) -..|+.|-|.-|.||+++.+|.+-+.|||+... T Consensus 115 H~~~IiHRDlKPeNILld~~g~iKL~DFGlak~ 147 (318) T cd05582 115 HSLGIIYRDLKPENILLDEEGHIKLTDFGLSKE 147 (318) T ss_pred HHCCCEEEEECCCCCCCCCCCCEEECCCCHHHH T ss_conf 878987210145445417889886423122020 No 215 >cd05619 STKc_nPKC_theta STKc_nPKC_theta: Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other Probab=98.60 E-value=2.6e-07 Score=75.84 Aligned_cols=137 Identities=19% Similarity=0.274 Sum_probs=79.9 Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67788886555502128887236876403104688777788999875321146854334691799999998878886559 Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR 206 (517) Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~ 206 (517) |+.||-|.||.|+-+. +|+.||||+.+..... . . ++.. .. . T Consensus 3 IG~G~fG~V~la~~~~--t~~~~AiK~i~k~~~~---~----------------~-----------~~~~-~~------~ 43 (316) T cd05619 3 LGKGSFGKVFLAELKG--TNQFFAIKALKKDVVL---M----------------D-----------DDVE-CT------M 43 (316) T ss_pred EEECCCEEEEEEEECC--CCCEEEEEEECHHHCC---C----------------C-----------HHHH-HH------H T ss_conf 4328895999999999--9989999998178733---7----------------1-----------5899-99------9 Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHC-CCH---HHHHHHHHHHHHHHHHH Q ss_conf 9998898720244677664300001022178--33530024786324267733200-225---68999999999998974 Q gi|254780623|r 207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACG-HDL---ERLSVTLVQSFLLHTLR 280 (517) Q Consensus 207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~-~d~---~~la~~l~~~~~~qi~~ 280 (517) .|.+.+... . +.|. |-+.|..+.++ -.|||||++|-.+.+. +...+ .+. ...+..++.+ +.-+-. T Consensus 44 ~E~~il~~~---~-~Hp~--Iv~l~~~f~~~~~lylvmEy~~gGdL~~~--l~~~~~~~~~~a~~~~~qi~~a-L~ylH~ 114 (316) T cd05619 44 VEKRVLSLA---W-EHPF--LTHLYCTFQTKENLFFVMEYLNGGDLMFH--IQSCHKFDLPRATFYAAEIICG-LQFLHS 114 (316) T ss_pred HHHHHHHHH---C-CCCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHHH T ss_conf 999999973---7-9998--88599999989999999975699878887--8643899999999999999999-999987 Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 4866178786228980289535743403121 Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) .|+.|-|.-|.||+++.+|.+-+.|||.+.. T Consensus 115 ~~IiHRDlKpeNILl~~~g~iKL~DFGlak~ 145 (316) T cd05619 115 KGIVYRDLKLDNILLDTDGHIKIADFGMCKE 145 (316) T ss_pred CCEEECCCCCCCCCCCCCCCEEEECCCHHHH T ss_conf 8947443476565525799778731125665 No 216 >cd07878 STKc_p38beta_MAPK11 The catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, Probab=98.60 E-value=5.8e-08 Score=80.90 Aligned_cols=157 Identities=16% Similarity=0.205 Sum_probs=89.5 Q ss_pred HHCCCCHHHHHHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 404788999999867--666778888655550212888723687640310468877778899987532114685433469 Q gi|254780623|r 110 SALKAPIEELYCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLC 187 (517) Q Consensus 110 ~elg~~~~~~F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~ 187 (517) +|+++.+=++=..++ +.|++|+-|+||+|.-. .+|+.||||+.+......... T Consensus 4 ~~~~~~~w~i~erY~~~~~IG~G~fG~Vy~a~d~--~t~~~vAiK~i~~~~~~~~~~----------------------- 58 (343) T cd07878 4 QELNKTVWEVPERYQNLTPVGSGAYGSVCSAYDT--RLRQKVAVKKLSRPFQSLIHA----------------------- 58 (343) T ss_pred EECCCEEECCCCCEEEEEEEECCCCEEEEEEEEC--CCCCEEEEEEECCCHHHHHHH----------------------- T ss_conf 9758705667547287369731608499999989--999899999988201235889----------------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCC-----HHCCCCEEEEECCCCCCCCHHHHHHHHCCC Q ss_conf 179999999887888655999988987202446776643000010-----221783353002478632426773320022 Q gi|254780623|r 188 FSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDW-----NRTERDVITMEWIDGVKISDTEKLRACGHD 262 (517) Q Consensus 188 ~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~-----~~st~~VLvmE~i~G~~i~d~~~l~~~~~d 262 (517) . .+.+|++.+..+.. ..-|.+-.+|. +-...-.+|||+. |..+.+.. +..... T Consensus 59 ---------~------~~~rEi~il~~l~H----~nIv~l~~~f~~~~~~~~~~~~~lv~e~~-g~~L~~~~--k~~~l~ 116 (343) T cd07878 59 ---------R------RTYRELRLLKHMKH----ENVIGLLDVFTPATSIENFNEVYLVTNLM-GADLNNIV--KCQKLS 116 (343) T ss_pred ---------H------HHHHHHHHHHHCCC----CCCCEEEEEECCCCCCCCCCEEEEEEECC-CCCHHHHH--HCCCCC T ss_conf ---------9------99999999986689----89411788851466555587699998058-96799998--629999 Q ss_pred H---HHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 5---689999999999989744866178786228980289535743403121698 Q gi|254780623|r 263 L---ERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 263 ~---~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) . +.++..++.+ +.-+-..|+.|-|.-|.||+++.+|++-+.|||.....+. T Consensus 117 e~~i~~i~~Qil~a-L~ylHs~~IIHRDLKP~NILl~~~~~vKL~DFGlA~~~~~ 170 (343) T cd07878 117 DEHVQFLIYQLLRG-LKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLARQADD 170 (343) T ss_pred HHHHHHHHHHHHHH-HHHHHHCCCEECCCCHHHEEECCCCCEEEEECCCCEECCC T ss_conf 99999999999999-9999888855466872554686778779841446611588 No 217 >cd05589 STKc_PKN STKc_PKN: Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, ce Probab=98.60 E-value=2.1e-07 Score=76.52 Aligned_cols=141 Identities=15% Similarity=0.147 Sum_probs=81.5 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.||-|+||.|+-+. +|+.||+|+.+..-- ..+ . + ...+..| T Consensus 5 ~~lG~G~fG~V~la~~~~--t~~~~AiK~i~k~~~----------------~~~-----------~---~-~~~~~~E-- 49 (324) T cd05589 5 AVLGRGHFGKVLLAEYKK--TGELYAIKALKKGDI----------------IAR-----------D---E-VESLMCE-- 49 (324) T ss_pred EEEECCCCCEEEEEEECC--CCCEEEEEEEEHHHC----------------CCH-----------H---H-HHHHHHH-- T ss_conf 998227381999999999--998999999857884----------------274-----------7---9-9999999-- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHH---HHHHHHHHHHHHHHH Q ss_conf 599998898720244677664300001022178--335300247863242677332002256---899999999999897 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLE---RLSVTLVQSFLLHTL 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~l~~~~~~qi~ 279 (517) .+-++.... . ..|. |-+.|.-+.++ -.+||||++|-.+... ++....+-. ..+..++.+ +.-+- T Consensus 50 ----~~il~~~~~-~-~HP~--Iv~l~~~f~~~~~~ylvmEy~~gGdL~~~--i~~~~l~e~~~~~~~~qi~~a-L~ylH 118 (324) T cd05589 50 ----KRIFETANS-E-RHPF--LVNLFACFQTEDHVCFVMEYAAGGDLMMH--IHTDVFSEPRAVFYAACVVLG-LQYLH 118 (324) T ss_pred ----HHHHHHHHH-C-CCCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHCCCCCHHHHHHHHHHHHHH-HHHHH T ss_conf ----999999864-7-9999--89499999989999999977999869999--743899999999999999999-99999 Q ss_pred HCCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 44866178786228980289535743403121 Q gi|254780623|r 280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) ..|+.|-|.-|.||+++.+|.+-+.|||+... T Consensus 119 ~~~IiHRDlKPeNILl~~~g~iKL~DFGlak~ 150 (324) T cd05589 119 ENKIVYRDLKLDNLLLDTEGYVKIADFGLCKE 150 (324) T ss_pred HCCEEEEECCCCCCCCCCCCCEEEEECCHHHH T ss_conf 78988985365442136899889965111121 No 218 >cd05597 STKc_DMPK_like STKc_DMPK_like: Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, and cardiac conduction defects. The genetic basis for DM1 is the mutational Probab=98.60 E-value=5.3e-08 Score=81.16 Aligned_cols=141 Identities=16% Similarity=0.244 Sum_probs=84.7 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.||-|.||+|+-+. +|+.||+|+.+.. + ...+ .. ...+.+ T Consensus 7 ~~IG~G~fG~V~~a~~k~--tg~~~AiKii~k~-------~---------~~~~----------~~-----~~~~~~--- 50 (331) T cd05597 7 KVIGRGAFGEVAVVKMKN--TGQVYAMKILNKW-------E---------MLKR----------AE-----TACFRE--- 50 (331) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECHH-------H---------HCCH----------HH-----HHHHHH--- T ss_conf 897327382999999989--9989999998378-------9---------2278----------89-----999999--- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHC--CCH---HHHHHHHHHHHHHH Q ss_conf 5999988987202446776643000010221783--3530024786324267733200--225---68999999999998 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACG--HDL---ERLSVTLVQSFLLH 277 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~--~d~---~~la~~l~~~~~~q 277 (517) |...+... +.+. |.+.|..+.+++ .|||||+.|-.+.+. +...+ .+- +.++..++.+ +.- T Consensus 51 ---E~~il~~~-----~hp~--Iv~l~~~f~~~~~~ylvmEy~~gGdL~~~--l~~~~~~l~e~~a~~~~~qi~~a-L~y 117 (331) T cd05597 51 ---ERDVLVNG-----DRRW--ITNLHYAFQDENNLYLVMDYYVGGDLLTL--LSKFEDRLPEDMARFYLAEMVLA-IDS 117 (331) T ss_pred ---HHHHHHHC-----CCCC--EEEEEEEEEECCEEEEEEEECCCCCHHHH--HHHHCCCCCHHHHHHHHHHHHHH-HHH T ss_conf ---99999857-----9998--74799999979999999981379746889--98606789999999999999999-999 Q ss_pred HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 9744866178786228980289535743403121698 Q gi|254780623|r 278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) +-..|+.|-|.-|.||+++.+|.+-+.|||....+.. T Consensus 118 lH~~~IiHRDlKPeNILl~~~g~iKL~DFG~a~~~~~ 154 (331) T cd05597 118 VHQLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLA 154 (331) T ss_pred HHHCCEECCCCCCCCCCCCCCCCEEEEECCHHHEECC T ss_conf 9977906154677663346899889984112203347 No 219 >cd05091 PTKc_Ror2 Catalytic Domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like orphan receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly Probab=98.60 E-value=5.8e-07 Score=73.13 Aligned_cols=148 Identities=11% Similarity=0.124 Sum_probs=90.9 Q ss_pred HHHH--HHHHHHHHHHHHHHHEEC---CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH Q ss_conf 9867--666778888655550212---88872368764031046887777889998753211468543346917999999 Q gi|254780623|r 121 CEFD--DPIAAASIAQVHPAVVHD---INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL 195 (517) Q Consensus 121 ~~fd--ePlasASiaQVh~A~l~d---~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 195 (517) +.++ |.|++||.|+||+|+++. ++.++.||||+.+...... T Consensus 5 ~~~~~~e~IG~G~fG~Vykg~~~~~~~~~~~~~VAiK~l~~~~~~~---------------------------------- 50 (283) T cd05091 5 STVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGP---------------------------------- 50 (283) T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHH---------------------------------- T ss_conf 9979998971588849999998788778777699999978115868---------------------------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC---CCCEEEEECCCCCCCCHHHHHHHH------------- Q ss_conf 9887888655999988987202446776643000010221---783353002478632426773320------------- Q gi|254780623|r 196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT---ERDVITMEWIDGVKISDTEKLRAC------------- 259 (517) Q Consensus 196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s---t~~VLvmE~i~G~~i~d~~~l~~~------------- 259 (517) ..+ +|.+|+..+.+++. |.|. +.|. .| .+..+||||+++-.+.+.-..... T Consensus 51 ---~~~--~f~~E~~~l~~l~H-----pNIv--~~~G-~~~~~~~~~lv~e~~~~G~L~~~L~~~~~~~~~~~~~~~~~~ 117 (283) T cd05091 51 ---LRE--EFRHEAMLRSRLQH-----PNIV--CLLG-VVTKEQPMSMIFSYSSHGDLHEFLVMRSPHSDVGSTDDDKTV 117 (283) T ss_pred ---HHH--HHHHHHHHHHHCCC-----CCCC--CEEE-EEEECCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCHH T ss_conf ---999--99999999981899-----8988--3989-997689029999906899189999760654433444321010 Q ss_pred --CCCHH---HHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHH Q ss_conf --02256---8999999999998974486617878622898028953574340312169899 Q gi|254780623|r 260 --GHDLE---RLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRE 316 (517) Q Consensus 260 --~~d~~---~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~ 316 (517) ..+.. .++..++.. +.-+-..++.|.|.-|.||+++.++.+-+-|||+...+.... T Consensus 118 ~~~l~~~~~~~i~~qia~g-l~yLH~~~ivHrDlK~~NILl~~~~~vKl~DFGls~~~~~~~ 178 (283) T cd05091 118 KSTLEPADFLHIVTQIAAG-MEFLSSHHVVHKDLAARNVLVFDKLNVKISDLGLFREVYSAD 178 (283) T ss_pred CCCCCHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCEECCCCC T ss_conf 1478999999999999999-999976992678676024898799968997547761556776 No 220 >cd07868 STKc_CDK8 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating R Probab=98.60 E-value=1e-07 Score=79.02 Aligned_cols=140 Identities=20% Similarity=0.286 Sum_probs=81.8 Q ss_pred HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 66778888655550212888723687640310468877778899987532114685433469179999999887888655 Q gi|254780623|r 126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL 205 (517) Q Consensus 126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~ 205 (517) =|+.||-|+||+|+.+|+.+++.||||+.+.. .... .. T Consensus 8 kiG~G~fg~V~~~~~~d~~~~~~~AiK~i~~~---------------------------~~~~---------~~------ 45 (317) T cd07868 8 KVGRGTYGHVYKAKRKDGKDDRDYALKQIEGT---------------------------GISM---------SA------ 45 (317) T ss_pred EEEECCCEEEEEEEEECCCCCEEEEEEEECCC---------------------------CCCH---------HH------ T ss_conf 84106181999999842863849999998988---------------------------7858---------99------ Q ss_pred HHHHHHHHHHHCCCCCCCC-CCCHHCCCHHCCC-CEEEEECCCCCCCCHHHHHHHH-CCC--HHHHHHHHHHHHHHHHH- Q ss_conf 9999889872024467766-4300001022178-3353002478632426773320-022--56899999999999897- Q gi|254780623|r 206 RLEAAAFSEMAENTVKDQG-FRVPKIDWNRTER-DVITMEWIDGVKISDTEKLRAC-GHD--LERLSVTLVQSFLLHTL- 279 (517) Q Consensus 206 ~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~st~-~VLvmE~i~G~~i~d~~~l~~~-~~d--~~~la~~l~~~~~~qi~- 279 (517) .+|.+.++++. .|. |..=.+|.+.... -.+||||.+|. +.++-..... ..+ ...+.+..+..++.|++ T Consensus 46 ~rEi~iL~~l~-----hpniv~l~~~~~~~~~~~~~lv~e~~~~~-L~~~~~~~~~~~~~~~~~~l~~~~i~~~~~qil~ 119 (317) T cd07868 46 CREIALLRELK-----HPNVISLQKVFLSHADRKVWLLFDYAEHD-LWHIIKFHRASKANKKPVQLPRGMVKSLLYQILD 119 (317) T ss_pred HHHHHHHHHCC-----CCCCCCEEEEEEECCCCEEEEEEECCCCC-HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 99999998679-----98998488999707997799999627997-8999987220100157667899999999999999 Q ss_pred ------HCCEECCCCCCCEEEEE----CCCCEEEEECCHHEECC Q ss_conf ------44866178786228980----28953574340312169 Q gi|254780623|r 280 ------RDGFFHADLHPGNLFVD----SKGYIVAVDMGITGRLS 313 (517) Q Consensus 280 ------~~GfFHaDPHpGNi~v~----~dg~i~~lDfG~vg~l~ 313 (517) ..|+.|.|.-|.||++. ..|++-+.|||....++ T Consensus 120 al~ylH~~~IiHRDlKP~NILi~~~~~~~~~vKi~DFG~a~~~~ 163 (317) T cd07868 120 GIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFN 163 (317) T ss_pred HHHHHHHCCEEECCCCCCEEEEECCCCCCCCEEECCCCCCEECC T ss_conf 99999878966057870207872368877857873565025647 No 221 >cd05061 PTKc_InsR Catalytic Domain of the Protein Tyrosine Kinase, Insulin Receptor. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta Probab=98.59 E-value=2.8e-07 Score=75.63 Aligned_cols=149 Identities=16% Similarity=0.200 Sum_probs=91.9 Q ss_pred HHHHH--HHHHHHHHHHHHHHHEEC---CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH Q ss_conf 99867--666778888655550212---8887236876403104688777788999875321146854334691799999 Q gi|254780623|r 120 YCEFD--DPIAAASIAQVHPAVVHD---INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRA 194 (517) Q Consensus 120 F~~fd--ePlasASiaQVh~A~l~d---~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e 194 (517) ++.++ ++|+.||-|+||+|+.++ +..+.+||||....... T Consensus 5 ~~~~~l~~~iG~G~fG~Vykg~~~~~~~~~~~~~vAvK~~~~~~~----------------------------------- 49 (288) T cd05061 5 REKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESAS----------------------------------- 49 (288) T ss_pred HHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCC----------------------------------- T ss_conf 799798339802767299998954776786370899999786558----------------------------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHH-HHHHCC--------CH Q ss_conf 99887888655999988987202446776643000010221--78335300247863242677-332002--------25 Q gi|254780623|r 195 LEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEK-LRACGH--------DL 263 (517) Q Consensus 195 ~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~-l~~~~~--------d~ 263 (517) ..++.+|.+|++-+.+++.. . |-+.|.-.+ ....+||||++|-.+.+.-. .+..+. .. T Consensus 50 ----~~~~~~f~~E~~~l~~l~h~-----n--Iv~l~g~~~~~~~~~ivmE~~~~G~L~~~l~~~~~~~~~~~~~~~~~~ 118 (288) T cd05061 50 ----LRERIEFLNEASVMKGFTCH-----H--VVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTL 118 (288) T ss_pred ----HHHHHHHHHHHHHHHHCCCC-----C--CCEEEEEEEECCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCHHH T ss_conf ----67899999999999867999-----8--875999999899679999905899499999872641014667886549 Q ss_pred H---HHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 6---899999999999897448661787862289802895357434031216989 Q gi|254780623|r 264 E---RLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 264 ~---~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) + .++..++.. +.-+-..|+.|.|.-|.||+++.++.+-+-|||+...+.+. T Consensus 119 ~~~~~~~~qia~g-l~yLH~~~IiHRDLKp~NILl~~~~~vKl~DFGls~~~~~~ 172 (288) T cd05061 119 QEMIQMAAEIADG-MAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYET 172 (288) T ss_pred HHHHHHHHHHHHH-HHHHHHCCCCCCCCCCCCEEECCCCCEEEEECCCCEECCCC T ss_conf 9999999999999-99986199554766878478899996899556675066767 No 222 >PRK10359 lipopolysaccharide core biosynthesis protein; Provisional Probab=98.59 E-value=2.6e-07 Score=75.80 Aligned_cols=130 Identities=15% Similarity=0.258 Sum_probs=81.4 Q ss_pred CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 87236876403104688777788999875321146854334691799999998878886559999889872024467766 Q gi|254780623|r 145 GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQG 224 (517) Q Consensus 145 ~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~ 224 (517) .|.+-++|+-||... +.-+++-.++ .. .+...+...+|=.++ .+-+.-.++. T Consensus 53 ~~kkyIlK~~r~~~~-------~~eR~~~sf~----kg-----------~~~~~ll~~~~~~~~------~g~~~~~d~y 104 (232) T PRK10359 53 DYGKYILKVFAPKVK-------RTERFLKSFV----KG-----------DYYENLIVQTDRVRS------EGLAFLNDFY 104 (232) T ss_pred CCCEEEEECCCHHHH-------HHHHHHHHHH----CC-----------HHHHHHHHHHHHHHH------CCCCCCCCHH T ss_conf 693799956740113-------5899999996----15-----------799999999999887------1523123411 Q ss_pred CCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEE Q ss_conf 43000010221783353002478632426773320022568999999999998974486617878622898028953574 Q gi|254780623|r 225 FRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAV 304 (517) Q Consensus 225 v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~l 304 (517) +.+-+-.--+|....++|||++|..++|.+.+.... ..+ +.....++-..|..|+||||||+.++.+| +-+| T Consensus 105 l~aekk~~~~i~~s~~l~EYIEG~~l~~~~dI~~~~--k~~-----I~~~I~kLH~~G~~sGD~h~gNFi~t~~g-lrII 176 (232) T PRK10359 105 LLAERKTLRYAHTYIMLIEYIEGVELNDMPEISEDV--KAK-----IKASIESLHQHGMVSGDPHKGNFIVSKDG-LRII 176 (232) T ss_pred EEEEHHHCCEEEEEEEEEEEECCCCCCCHHHCCHHH--HHH-----HHHHHHHHHHCCCCCCCCCCCCEEEECCC-EEEE T ss_conf 243413155222365564322584456444326668--999-----99999999874762589886647985895-7999 Q ss_pred ECCHHE Q ss_conf 340312 Q gi|254780623|r 305 DMGITG 310 (517) Q Consensus 305 DfG~vg 310 (517) |.-.=+ T Consensus 177 DlsgKk 182 (232) T PRK10359 177 DLSGKR 182 (232) T ss_pred ECCCCC T ss_conf 887730 No 223 >cd05594 STKc_PKB_alpha STKc_PKB_alpha: Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, r Probab=98.59 E-value=2.6e-07 Score=75.81 Aligned_cols=133 Identities=17% Similarity=0.155 Sum_probs=79.8 Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67788886555502128887236876403104688777788999875321146854334691799999998878886559 Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR 206 (517) Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~ 206 (517) |+.||-|+||.|+-+. +|+.||+|+.+.... . . .+-...+ . T Consensus 3 IG~G~fG~V~l~~~k~--t~~~~AiK~i~k~~~----------------~----------~-----~~~~~~~------~ 43 (324) T cd05594 3 LGKGTFGKVILVKEKA--TGRYYAMKILKKEVI----------------V----------A-----KDEVAHT------L 43 (324) T ss_pred EEECCCEEEEEEEECC--CCCEEEEEEEEHHHC----------------C----------C-----HHHHHHH------H T ss_conf 6617384999999889--998999999827886----------------4----------8-----7999999------9 Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH------ Q ss_conf 9998898720244677664300001022178--33530024786324267733200225689999999999989------ Q gi|254780623|r 207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT------ 278 (517) Q Consensus 207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi------ 278 (517) +|.+.+...+ +|.|. +.|..+.++ -.+||||++|-.+.+. +...+. +.+..+..|+.|+ T Consensus 44 ~E~~il~~~~-----Hp~Iv--~l~~~f~~~~~lylVmEy~~gGdL~~~--l~~~~~----~~e~~~~~~~~qi~~aL~y 110 (324) T cd05594 44 TENRVLQNSR-----HPFLT--ALKYSFQTHDRLCFVMEYANGGELFFH--LSRERV----FSEDRARFYGAEIVSALDY 110 (324) T ss_pred HHHHHHHHCC-----CCCEE--EEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCC----CCHHHHHHHHHHHHHHHHH T ss_conf 9999998689-----99881--799999989999999967799847666--751688----9999999999999999999 Q ss_pred -H-HCCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf -7-44866178786228980289535743403121 Q gi|254780623|r 279 -L-RDGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 279 -~-~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) - ..|+.|-|.-|.||+++.+|.+-+.|||.+.. T Consensus 111 LHs~~~IiHRDLKPeNILl~~~g~iKL~DFGlak~ 145 (324) T cd05594 111 LHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKE 145 (324) T ss_pred HHHHCCEECCCCCCCCCCCCCCCCEEECCHHHHHH T ss_conf 99837971143456555647888773122134343 No 224 >cd05083 PTKc_Chk Catalytic Domain of the Protein Tyrosine Kinase, Csk homologous kinase. Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki Probab=98.59 E-value=4.6e-07 Score=73.88 Aligned_cols=139 Identities=18% Similarity=0.196 Sum_probs=88.4 Q ss_pred HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 99867--6667788886555502128887236876403104688777788999875321146854334691799999998 Q gi|254780623|r 120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ 197 (517) Q Consensus 120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 197 (517) ++.|+ +-|++|+-|.||+|+.+ |++||||+.+.+. . . T Consensus 5 ~~~~~l~~~iG~G~fG~Vy~~~~~----g~~vAvK~i~~~~----------------------------~----~----- 43 (254) T cd05083 5 LQKLTLGEIIGEGEFGAVLQGEYT----GQKVAVKNIKCDV----------------------------T----A----- 43 (254) T ss_pred HHHEEEEEEEECCCCCEEEEEEEC----CCEEEEEEECCCC----------------------------C----H----- T ss_conf 799687459820898189999999----9299999978787----------------------------8----9----- Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHH-HHCCCHH---HHHHHHHHH Q ss_conf 878886559999889872024467766430000102217833530024786324267733-2002256---899999999 Q gi|254780623|r 198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLR-ACGHDLE---RLSVTLVQS 273 (517) Q Consensus 198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~-~~~~d~~---~la~~l~~~ 273 (517) -+|.+|++.+.+++.- +. |.+=.+. ....-.+||||++|-++.+.-.-. ....+.. +++..++.. T Consensus 44 -----~~f~~E~~~l~~l~Hp--nI--v~~~g~~--~~~~~~iv~Ey~~~GsL~~~L~~~~~~~~~~~~~~~i~~qia~g 112 (254) T cd05083 44 -----QAFLEETAVMTKLHHK--NL--VRLLGVI--LHNGLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEG 112 (254) T ss_pred -----HHHHHHHHHHHHCCCC--CC--CCEEEEE--EECCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHH T ss_conf -----9999999999867995--89--9499999--87987999985899969999986699889999999999999999 Q ss_pred HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 99989744866178786228980289535743403121 Q gi|254780623|r 274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) +.-+-..|+.|.|.-|.||+++.+|.+-+-|||+... T Consensus 113 -l~yLH~~~iiHrDLK~~NILi~~~~~~Ki~DFGls~~ 149 (254) T cd05083 113 -MEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLARV 149 (254) T ss_pred -HHHHHCCCCCCCCCCCCCEEECCCCCEEEEECCCCEE T ss_conf -9998259953560571424388999099941787657 No 225 >cd07844 STKc_PCTAIRE_like The catalytic domain of PCTAIRE-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as Probab=98.58 E-value=1.3e-07 Score=78.25 Aligned_cols=132 Identities=22% Similarity=0.320 Sum_probs=81.0 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-|+.||-|.||+|.-+. +|+.||||+.+..-.+ ... ... T Consensus 11 ~~lG~G~fg~V~~~~~~~--~~~~vAiK~i~~~~~~------------------------~~~---------~~~----- 50 (291) T cd07844 11 DKLGEGSYATVYKGRSKL--TGQLVALKEIRLEHEE------------------------GAP---------FTA----- 50 (291) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEECCCCC------------------------CCH---------HHH----- T ss_conf 698228693999999889--9989999998701012------------------------227---------889----- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH----- Q ss_conf 599998898720244677664300001022178--3353002478632426773320022568999999999998----- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH----- 277 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q----- 277 (517) .+|...+..++. +. |.+.|.-+-++ -++||||++| .+.+. +...+ +.+...-+..|+.| T Consensus 51 -~rEi~il~~l~h-----~n--Iv~l~~~~~~~~~~~iv~Ey~~~-~L~~~--l~~~~---~~l~~~~i~~~~~Qil~al 116 (291) T cd07844 51 -IREASLLKDLKH-----AN--IVTLHDIIHTKKTLTLVFEYLDT-DLKQY--MDDCG---GGLSMHNVRLFLFQLLRGL 116 (291) T ss_pred -HHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEEECCC-CHHHH--HHHCC---CCCCHHHHHHHHHHHHHHH T ss_conf -999999986789-----89--87498888418868999980289-88999--99768---9999999999999999999 Q ss_pred --HHHCCEECCCCCCCEEEEECCCCEEEEECCHHE Q ss_conf --974486617878622898028953574340312 Q gi|254780623|r 278 --TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITG 310 (517) Q Consensus 278 --i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg 310 (517) +-..|+.|-|.-|.||+++.+|++-+.|||+.. T Consensus 117 ~yLH~~~iiHRDiKP~NILl~~~~~iKl~DFG~s~ 151 (291) T cd07844 117 AYCHQRRVLHRDLKPQNLLISERGELKLADFGLAR 151 (291) T ss_pred HHHHHCCEEECCCCHHHEEECCCCCEEECCCCCCH T ss_conf 99987994667176798688889978864115331 No 226 >cd07845 STKc_CDK10 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10 subfamily. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. C Probab=98.58 E-value=1.5e-07 Score=77.70 Aligned_cols=139 Identities=18% Similarity=0.253 Sum_probs=80.2 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.||-|.||+|+-+. +|+.||||+.+-.-. .| ...... T Consensus 13 ~~iG~G~fg~V~~~~~~~--t~~~vAiK~i~~~~~----~~----------------------------~~~~~~----- 53 (309) T cd07845 13 NRIGEGTYGIVYRARDTR--SGEIVALKKVRMDRE----RD----------------------------GIPISS----- 53 (309) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCC----CC----------------------------HHHHHH----- T ss_conf 895247281999999889--997999999811004----31----------------------------557889----- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC-CCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH----- Q ss_conf 5999988987202446776643000010221-7833530024786324267733200225689999999999989----- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRT-ERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT----- 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s-t~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi----- 278 (517) .+|.+.+..++. ..-|..=.+|..-. ..-.|||||++| .+.+. ++... ..+.+.-+..+++|+ T Consensus 54 -~rEi~il~~l~H----pnIv~l~~~~~~~~~~~~~lvmE~~~~-~L~~~--l~~~~---~~l~e~~i~~i~~Qll~al~ 122 (309) T cd07845 54 -LREITLLLNLRH----PNIVELKEVVVGKHLDSIFLVMEYCEQ-DLASL--LDNMP---TPFSESQVKCLMLQLLRGLQ 122 (309) T ss_pred -HHHHHHHHHCCC----CCCCEEEEEEECCCCCEEEEEEECCCC-CHHHH--HHHCC---CCCCHHHHHHHHHHHHHHHH T ss_conf -999999986689----981206889943888879999954898-87999--98568---99999999999999999999 Q ss_pred --HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf --74486617878622898028953574340312169 Q gi|254780623|r 279 --LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 279 --~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) -..|+.|-|.-|.||+++.+|.+-+.|||+...++ T Consensus 123 yLH~~~IiHRDiKPeNILl~~~~~vKl~DFGla~~~~ 159 (309) T cd07845 123 YLHENFIIHRDLKVSNLLLTDKGCLKIADFGLARTFG 159 (309) T ss_pred HHHHCCCEECCCCHHHEEECCCCCEEEEECCCHHHCC T ss_conf 9987894668688233678799988997423122236 No 227 >cd05620 STKc_nPKC_delta STKc_nPKC_delta: Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhanc Probab=98.58 E-value=2.4e-07 Score=76.11 Aligned_cols=137 Identities=20% Similarity=0.272 Sum_probs=80.7 Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67788886555502128887236876403104688777788999875321146854334691799999998878886559 Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR 206 (517) Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~ 206 (517) |++||-|.||.|+.+. +|+.||||+.+.... . .. ++.. .. . T Consensus 3 lG~G~fG~V~la~~~~--tg~~~AiK~i~k~~~----------------~---~~-----------~~~~-~~------~ 43 (316) T cd05620 3 LGKGSFGKVLLAELKG--KGEYFAVKALKKDVV----------------L---ID-----------DDVE-CT------M 43 (316) T ss_pred EEECCCEEEEEEEECC--CCCEEEEEEECHHHC----------------C---CC-----------HHHH-HH------H T ss_conf 8528794999999999--998999999836662----------------4---60-----------5799-99------9 Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHC-CCH---HHHHHHHHHHHHHHHHH Q ss_conf 99988987202446776643000010221783--3530024786324267733200-225---68999999999998974 Q gi|254780623|r 207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACG-HDL---ERLSVTLVQSFLLHTLR 280 (517) Q Consensus 207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~-~d~---~~la~~l~~~~~~qi~~ 280 (517) .|.+.+... .+++. |.+.|..+.+++ .|||||++|-.+.+. +...+ .+. ..++..++.+ +.-+-. T Consensus 44 ~e~~il~~~----~~hp~--Iv~l~~~f~~~~~lylvmEy~~gGdL~~~--l~~~~~~~e~~~~~~~~qi~~a-L~yLH~ 114 (316) T cd05620 44 VEKRVLALA----WENPF--LTHLYCTFQTKEHLFFVMEFLNGGDLMFH--IQDKGRFDLYRATFYAAEIVCG-LQFLHS 114 (316) T ss_pred HHHHHHHHH----CCCCC--EEEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHHH T ss_conf 999999985----79996--82699999989999999976799888787--8744999999999999999999-999997 Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 4866178786228980289535743403121 Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) .|+.|-|.-|.||+++.+|.+-+.|||+... T Consensus 115 ~~IiHRDlKPeNILl~~~g~iKL~DFGlak~ 145 (316) T cd05620 115 KGIIYRDLKLDNVMLDRDGHIKIADFGMCKE 145 (316) T ss_pred CCCEECCCCCCCCCCCCCCCEEEEECCEEHH T ss_conf 8905230376555505899789832140000 No 228 >cd05578 STKc_Yank1 STKc_Yank1: Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Probab=98.58 E-value=7.8e-08 Score=79.90 Aligned_cols=139 Identities=15% Similarity=0.221 Sum_probs=88.5 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.||.|+-|.||+|+-+. +|+.||||+....- . .+ .. .... T Consensus 6 ~~iG~G~fg~Vy~~~~~~--t~~~~AvK~i~~~~----------------~----------~~-~~----~~~~------ 46 (258) T cd05578 6 RVIGKGSFGKVCIVQKRD--TKKMFAMKYMNKQK----------------C----------VE-KG----SVRN------ 46 (258) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECHHH----------------C----------CC-HH----HHHH------ T ss_conf 598228895999999889--99899999981788----------------6----------69-89----9999------ Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH---- Q ss_conf 5999988987202446776643000010221783--3530024786324267733200225689999999999989---- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT---- 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi---- 278 (517) +.+|.+-+.++. .|. |.+.|..+.+++ .+||||++|-.+.+. +...+ .+.+.-+..|+.|+ T Consensus 47 ~~~Ei~~l~~l~-----Hpn--Iv~~~~~~~~~~~~~ivmEy~~~g~L~~~--l~~~~----~~~e~~~~~~~~Qi~~aL 113 (258) T cd05578 47 VLNELQILQSLE-----HPF--LVNLWYSFQDEEDMYLVVDLLLGGDLRYH--LQQKV----KFSEEQVKFYVCEIVLAL 113 (258) T ss_pred HHHHHHHHHHCC-----CCC--CCCEEEEEEECCEEEEEEECCCCCCHHHH--HHHCC----CCCHHHHHHHHHHHHHHH T ss_conf 999999998779-----989--89589999989999999958699858999--98759----999999999999999999 Q ss_pred ---HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf ---7448661787862289802895357434031216989 Q gi|254780623|r 279 ---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 279 ---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) -..|+.|-|.-|.||+++.+|.+.+.|||+...+++. T Consensus 114 ~ylH~~~IiHRDIKpeNILl~~~g~vkl~DFG~a~~~~~~ 153 (258) T cd05578 114 EYLHSKGIIHRDIKPDNILLDEQGHAHLTDFNIATKLTPD 153 (258) T ss_pred HHHHHCCEEECCCCHHHEEECCCCCEEEEECCCCEECCCC T ss_conf 9998789440457757778989998999448888676899 No 229 >cd07871 STKc_PCTAIRE3 The catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical fila Probab=98.58 E-value=2.8e-07 Score=75.54 Aligned_cols=136 Identities=19% Similarity=0.278 Sum_probs=80.8 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-|+.||-|.||+|+-+. +|+.||||+.+..-. . . .. .. T Consensus 11 ~~iG~G~fg~V~~~~~~~--t~~~vAiK~i~~~~~---------------------~-~-----------~~------~~ 49 (288) T cd07871 11 DKLGEGTYATVFKGRSKL--TENLVALKEIRLEHE---------------------E-G-----------AP------CT 49 (288) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHHC---------------------C-C-----------HH------HH T ss_conf 187048692999999889--998999999834322---------------------3-0-----------38------99 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHC--CCH---HHHHHHHHHHHHHH Q ss_conf 599998898720244677664300001022178--33530024786324267733200--225---68999999999998 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACG--HDL---ERLSVTLVQSFLLH 277 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~--~d~---~~la~~l~~~~~~q 277 (517) ..+|.+.+..++. |. |-+.|.-+.++ -.+||||++| .+.+. ++..+ .+. +.++..++.+ +.- T Consensus 50 ~~~Ei~il~~l~H-----pn--Iv~l~~~~~~~~~~~lv~E~~~~-~l~~~--l~~~~~~~~~~~~~~~~~qil~a-l~y 118 (288) T cd07871 50 AIREVSLLKNLKH-----AN--IVTLHDIIHTERCLTLVFEYLDS-DLKQY--LDNCGNLMSMHNVKIFMFQLLRG-LSY 118 (288) T ss_pred HHHHHHHHHHCCC-----CC--EEEEEEEECCCCEEEEEEECCCC-HHHHH--HHHCCCCCCHHHHHHHHHHHHHH-HHH T ss_conf 9999999986789-----99--72241113479868999966760-59999--98648989999999999999999-999 Q ss_pred HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC Q ss_conf 97448661787862289802895357434031216 Q gi|254780623|r 278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL 312 (517) Q Consensus 278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l 312 (517) +-..|+.|-|.-|.||+++.+|.+-+.|||+.... T Consensus 119 lH~~~IiHRDiKPeNILi~~~~~vKl~DFGla~~~ 153 (288) T cd07871 119 CHKRKILHRDLKPQNLLINEKGELKLADFGLARAK 153 (288) T ss_pred HHHCCEEEEECCCHHEEECCCCCEEEEEECCCCCC T ss_conf 98789277124502147879997899173555016 No 230 >cd05054 PTKc_VEGFR Catalytic Domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto Probab=98.58 E-value=3.3e-07 Score=75.03 Aligned_cols=34 Identities=18% Similarity=0.389 Sum_probs=30.2 Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC Q ss_conf 7448661787862289802895357434031216 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL 312 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l 312 (517) -..|+.|.|.-|.||+++.++.+-+-|||+...+ T Consensus 190 H~~~iiHRDLK~~NiLl~~~~~vKi~DFGlar~~ 223 (337) T cd05054 190 ASRKCIHRDLAARNILLSENNVVKICDFGLARDI 223 (337) T ss_pred HHCCEECCCCCHHHEEECCCCCEEEEECCCCCCC T ss_conf 7689134636589877888998999726353026 No 231 >cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like orphan receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer Probab=98.57 E-value=2.6e-07 Score=75.86 Aligned_cols=146 Identities=14% Similarity=0.190 Sum_probs=90.3 Q ss_pred HHHHH--HHHHHHHHHHHHHHHEEC---CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH Q ss_conf 99867--666778888655550212---8887236876403104688777788999875321146854334691799999 Q gi|254780623|r 120 YCEFD--DPIAAASIAQVHPAVVHD---INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRA 194 (517) Q Consensus 120 F~~fd--ePlasASiaQVh~A~l~d---~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e 194 (517) |+.++ |.|+.||.|.||+|++.. ...+..||||+.+.... + ... T Consensus 4 ~~~~~~~e~IG~G~fG~Vykg~~~~~~~~~~~~~VaiK~l~~~~~---------------------~--------~~~-- 52 (283) T cd05048 4 LSAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAE---------------------P--------KVQ-- 52 (283) T ss_pred HHHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCC---------------------H--------HHH-- T ss_conf 799898369715888389999983788760677999999883269---------------------7--------899-- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC---CCEEEEECCCCCCCCHHHHHH-------------- Q ss_conf 998878886559999889872024467766430000102217---833530024786324267733-------------- Q gi|254780623|r 195 LEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE---RDVITMEWIDGVKISDTEKLR-------------- 257 (517) Q Consensus 195 ~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st---~~VLvmE~i~G~~i~d~~~l~-------------- 257 (517) -+|.+|+..+.+++. |.| =+.|. .|+ ...+||||++|-.+.+.-..+ T Consensus 53 --------~~f~~E~~~l~~l~H-----pnI--v~~~g-~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~ 116 (283) T cd05048 53 --------QEFRQEAELMSDLQH-----PNI--VCLLG-VCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDET 116 (283) T ss_pred --------HHHHHHHHHHHHCCC-----CCE--EEEEE-EEEECCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCC T ss_conf --------999999999985899-----897--31889-99668866999991699908999986187642111123333 Q ss_pred -HHCCCH---HHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf -200225---68999999999998974486617878622898028953574340312169 Q gi|254780623|r 258 -ACGHDL---ERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 258 -~~~~d~---~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) ....+. -.++..++.+. .-+-..|+.|.|.-|.||+++.++.+-+-|||+...+. T Consensus 117 ~~~~l~~~~~~~i~~~ia~gl-~yLH~~~IvHrDlK~~NILl~~~~~~Ki~DFGla~~~~ 175 (283) T cd05048 117 VKSSLDCSDFLHIAIQIAAGM-EYLSSHHFVHRDLAARNCLVGEGLTVKISDFGLSRDIY 175 (283) T ss_pred CCCCCCHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCC T ss_conf 357799999999999999999-99986890777556175898899938998604750567 No 232 >cd07855 STKc_ERK5 The catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5 subfamily. Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphory Probab=98.56 E-value=8.2e-08 Score=79.71 Aligned_cols=142 Identities=19% Similarity=0.263 Sum_probs=79.8 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.||.||-|+||+|+-+. +|+.||||+..-... .. .....+. T Consensus 11 ~~iG~G~fg~V~~a~~~~--t~~~vAiK~i~~~~~----------------------------~~----~~~~~~~---- 52 (336) T cd07855 11 ETIGNGAYGVVCSAIDKK--TGQKVAIKKIPNAFD----------------------------VL----TTAKRTL---- 52 (336) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECCHHC----------------------------CH----HHHHHHH---- T ss_conf 798225087999999899--998999999894002----------------------------46----7899999---- Q ss_pred HHHHHHHHHHHHC-CCCCCCCCC-CHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH---- Q ss_conf 5999988987202-446776643-0000102217833530024786324267733200225689999999999989---- Q gi|254780623|r 205 LRLEAAAFSEMAE-NTVKDQGFR-VPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT---- 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~-~~~~~~~v~-vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi---- 278 (517) +|.+-+..+.. |.-....+. .+..+.+ ...-.+||||++| .+.+. +... ..+.+.-+..|++|+ T Consensus 53 --rEi~il~~l~HpnIv~l~~~~~~~~~~~~-~~~~yivmE~~~~-~L~~~--i~~~----~~l~e~~i~~~~~Qll~aL 122 (336) T cd07855 53 --RELKILKHFKHDNIIAIKEILRPPVPTAD-FKDVYVVLDLMES-DLHHI--IHSD----QPLTLEHVRYFLYQLLRGL 122 (336) T ss_pred --HHHHHHHHCCCCCEEEEEEEEECCCCCCC-CCEEEEEEECCCC-CHHHH--HHHC----CCCCHHHHHHHHHHHHHHH T ss_conf --99999986689998538888712665456-7658999972697-26999--9858----9999999999999999999 Q ss_pred ---HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf ---744866178786228980289535743403121698 Q gi|254780623|r 279 ---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 279 ---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) -..|+.|.|.-|.||+++.++++-+.|||+...++. T Consensus 123 ~ylH~~gIiHRDlKPeNILl~~~~~iKl~DFGla~~l~~ 161 (336) T cd07855 123 KYIHSANVLHRDLKPSNLLVNENCELKIGDFGMARGLSS 161 (336) T ss_pred HHHHHCCCEECCCCHHHEEECCCCCEEECEECCCEECCC T ss_conf 999888941233654776986999888363110000136 No 233 >cd06647 STKc_PAK_I Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include Probab=98.56 E-value=2.1e-07 Score=76.51 Aligned_cols=139 Identities=16% Similarity=0.219 Sum_probs=88.3 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.||-|.||+|+-.. +|+.||||+..-. . .+. . .. T Consensus 25 ~~iG~G~fg~Vy~a~~~~--tg~~vAiK~i~~~--------------------~-~~~----------~---~~------ 62 (293) T cd06647 25 EKIGQGASGTVYTAIDVA--TGQEVAIKQMNLQ--------------------Q-QPK----------K---EL------ 62 (293) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEEHH--------------------C-CCH----------H---HH------ T ss_conf 897048680999999889--9989999998820--------------------0-753----------8---99------ Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHHHHHHHHH Q ss_conf 599998898720244677664300001022178--3353002478632426773320022568---99999999999897 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQSFLLHTL 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~~~~~qi~ 279 (517) +.+|+..+.+++. |. |-+.|..+.+. -.+||||++|-.+.+.- .....+-.. ++..++.+ +.-+- T Consensus 63 ~~~Ei~il~~l~H-----pn--Iv~~~~~~~~~~~~~ivmEy~~gg~L~~~i--~~~~l~e~~~~~i~~qil~a-L~ylH 132 (293) T cd06647 63 IINEILVMRENKH-----PN--IVNYLDSYLVGDELWVVMEYLAGGSLTDVV--TETCMDEGQIAAVCRECLQA-LEFLH 132 (293) T ss_pred HHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHHH--HHCCCCHHHHHHHHHHHHHH-HHHHH T ss_conf 9999999986799-----89--990999999899999999678989289998--70699999999999999999-99999 Q ss_pred HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 448661787862289802895357434031216989 Q gi|254780623|r 280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) ..|+.|-|.-|.||+++.+|.+-+.|||+...+.+. T Consensus 133 ~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~ 168 (293) T cd06647 133 SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE 168 (293) T ss_pred HCCCEECCCCHHHEEECCCCCEEEECCCCCEECCCC T ss_conf 789354668768878999999999828887677688 No 234 >cd05053 PTKc_FGFR Catalytic Domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, Probab=98.56 E-value=3e-07 Score=75.35 Aligned_cols=154 Identities=16% Similarity=0.186 Sum_probs=90.1 Q ss_pred CHHHHHHHHH--HHHHHHHHHHHHHHHEEC----CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH Q ss_conf 8999999867--666778888655550212----8887236876403104688777788999875321146854334691 Q gi|254780623|r 115 PIEELYCEFD--DPIAAASIAQVHPAVVHD----INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCF 188 (517) Q Consensus 115 ~~~~~F~~fd--ePlasASiaQVh~A~l~d----~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~ 188 (517) .|+--.+.|+ +.|++||-|+||+|+... ..++..||||+.++...+ .++ T Consensus 6 ~~~i~~~~~~l~~~LG~G~fG~Vyk~~~~~~~~~~~~~~~vAvK~l~~~~~~---~~~---------------------- 60 (294) T cd05053 6 EWELPRDRLTLGKPLGEGAFGQVVKAEAVGLPNRQNEETTVAVKMLKEDATE---KDL---------------------- 60 (294) T ss_pred CCCCCHHHEEECCEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCH---HHH---------------------- T ss_conf 6741489928726893077829999998477775778679999998877797---999---------------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHH-------- Q ss_conf 7999999988788865599998898720244677664300001022--178335300247863242677332-------- Q gi|254780623|r 189 SAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRA-------- 258 (517) Q Consensus 189 ~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~-------- 258 (517) -+|.+|++-+.++.+ .+.| | +.|.-. ...-.+||||++|-.+.+.-.-.. T Consensus 61 --------------~~~~~E~~~l~~l~~----HpnI-v-~~~g~~~~~~~~~iv~Ey~~~GsL~~~l~~~~~~~~~~~~ 120 (294) T cd05053 61 --------------SDLVSEMEVMKMIGK----HKNI-I-NLLGCCTQGGPLYVVVEYAAHGNLRDFLRARRPPGEYASS 120 (294) T ss_pred --------------HHHHHHHHHHHHHCC----CCCE-E-EEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCCCC T ss_conf --------------999999999987348----9868-8-7878980599889999817999499999861875200122 Q ss_pred -------HCCCHH---HHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf -------002256---89999999999989744866178786228980289535743403121698 Q gi|254780623|r 259 -------CGHDLE---RLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 259 -------~~~d~~---~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) ...... .++..++.+ +.-+-..|+.|-|.-|.||+++.++.+-+.|||+...+.. T Consensus 121 ~~~~~~~~~l~~~~~~~~~~qia~g-l~yLH~~~IvHRDlKp~NILl~~~~~~Kl~DFGls~~~~~ 185 (294) T cd05053 121 DDPRPPEETLTQKDLVSFAYQVARG-MEYLASKKCIHRDLAARNVLVTEGYVMKIADFGLARDIHD 185 (294) T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCC T ss_conf 2233433577999999999999999-9999848996776770207888999499975787536788 No 235 >cd05055 PTKc_PDGFR Catalytic Domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept Probab=98.56 E-value=1.5e-07 Score=77.61 Aligned_cols=152 Identities=15% Similarity=0.152 Sum_probs=92.9 Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHEEC---CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH Q ss_conf 999999867--666778888655550212---888723687640310468877778899987532114685433469179 Q gi|254780623|r 116 IEELYCEFD--DPIAAASIAQVHPAVVHD---INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSA 190 (517) Q Consensus 116 ~~~~F~~fd--ePlasASiaQVh~A~l~d---~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~ 190 (517) ||--+..|+ +-|+.||-|.||+|+.+. .....+||||+.++.... T Consensus 30 wei~~~~l~~~~~lG~G~fG~Vy~a~~~g~~~~~~~~~VAvK~l~~~~~~------------------------------ 79 (302) T cd05055 30 WEFPRNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHS------------------------------ 79 (302) T ss_pred CCCCHHHEEECCEECCCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCCH------------------------------ T ss_conf 10778990882498117771999989907888783279999995787997------------------------------ Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHH-CCCHH---H Q ss_conf 9999998878886559999889872024467766-43000010221783353002478632426773320-02256---8 Q gi|254780623|r 191 VVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQG-FRVPKIDWNRTERDVITMEWIDGVKISDTEKLRAC-GHDLE---R 265 (517) Q Consensus 191 ~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~-~~d~~---~ 265 (517) .+.-.|.+|++-+.++.+ .|. |.+=.++. ....-.|||||++|-++.+.-.-+.. ....+ . T Consensus 80 ---------~~~~~f~~Ei~il~~L~~----HpNIV~l~g~~~-~~~~~~iV~Ey~~~GsL~~~L~~~~~~~l~~~~~~~ 145 (302) T cd05055 80 ---------SEREALMSELKIMSHLGN----HENIVNLLGACT-IGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLS 145 (302) T ss_pred ---------HHHHHHHHHHHHHHHCCC----CCCEEEEEEEEE-ECCEEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHH T ss_conf ---------999999999999974679----999808999999-899999999868999689999757888899999999 Q ss_pred HHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC Q ss_conf 99999999999897448661787862289802895357434031216 Q gi|254780623|r 266 LSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL 312 (517) Q Consensus 266 la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l 312 (517) ++..++.+. .-+-..|+.|.|.-|.|++++.++.+-+-|||+...+ T Consensus 146 i~~qia~gl-~yLH~~~iiHRDLK~~NILl~~~~~~Ki~DFGla~~~ 191 (302) T cd05055 146 FSYQVAKGM-AFLASKNCIHRDLAARNVLLTHGKIVKICDFGLARDI 191 (302) T ss_pred HHHHHHHHH-HHHHHCCCCCCCCCCCCEEECCCCCEEEEECCCCEEC T ss_conf 999999999-9997689477746502233668995786025762133 No 236 >cd07832 STKc_CCRK The catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase subfamily. Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the deve Probab=98.55 E-value=6.8e-08 Score=80.36 Aligned_cols=140 Identities=21% Similarity=0.268 Sum_probs=82.4 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +=|+.||-|.||+|.-+. +|+.||||+.+..-.. . +....+. T Consensus 6 ~~iG~G~fg~V~~~~d~~--t~~~vAiK~i~~~~~~--------------------~------------~~~~~~~---- 47 (286) T cd07832 6 GRIGEGAHGIVFKAKHLE--TGETVALKKIHLRRLE--------------------G------------GIPNAAL---- 47 (286) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHHCC--------------------C------------HHHHHHH---- T ss_conf 286325084999999889--9989999998133448--------------------4------------7899999---- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH------ Q ss_conf 59999889872024467766430000102217833530024786324267733200225689999999999989------ Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT------ 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi------ 278 (517) +|...+...+. ..-+.+=.+|. ..+.-.+||||+.| .+.+. +...+ +.+.+..+..|++|+ T Consensus 48 --~Ei~~l~~l~h----pnIi~~~~~~~-~~~~~~iVmE~~~~-~L~~~--l~~~~---~~~~~~~i~~~~~qil~aL~y 114 (286) T cd07832 48 --REIKALQACQH----PNIVKLLDVFP-HGSGFVLVMEYMPS-DLSEV--LRDSE---RPLPEAQVKSYMRMLLKGLAH 114 (286) T ss_pred --HHHHHHHHCCC----CCCCEEEEEEE-ECCEEEEEEECCCC-CHHHH--HHHCC---CCCCHHHHHHHHHHHHHHHHH T ss_conf --99999986799----99892999999-89999999848999-88999--98659---998999999999999999999 Q ss_pred -HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf -7448661787862289802895357434031216989 Q gi|254780623|r 279 -LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 279 -~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) -..|+.|.|.-|.||+++.+|.+-+.|||....+++. T Consensus 115 LH~~~IiHrDiKPeNIll~~~~~vKL~DFG~a~~~~~~ 152 (286) T cd07832 115 MHALGIMHRDLKPANLLISADGVLKIADFGLARLLSEE 152 (286) T ss_pred HHHCCEEECCCCHHHEEECCCCCEEEECCCCCEECCCC T ss_conf 99899577758768779869998898016645135788 No 237 >cd07869 STKc_PFTAIRE1 The catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase. Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D Probab=98.55 E-value=2.7e-07 Score=75.65 Aligned_cols=134 Identities=19% Similarity=0.206 Sum_probs=80.2 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|++||-|+||+|+-+. +|+.||||+.+..-. . . .. ... T Consensus 11 ~~iG~G~fg~V~~a~~~~--tg~~vAiK~i~~~~~------------------~----~---~~--------~~~----- 50 (303) T cd07869 11 EKLGEGSYATVYKGKSKV--NGKLVALKVIRLQEE------------------E----G---TP--------FTA----- 50 (303) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHHH------------------C----C---CH--------HHH----- T ss_conf 188238794999999889--997999999834461------------------3----4---68--------899----- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH---- Q ss_conf 59999889872024467766430000102217--833530024786324267733200225689999999999989---- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT---- 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi---- 278 (517) .+|++-+..+.. |.| -+.|.-+.+ .-.+||||++|--...+.. ...+.... -+..++.|+ T Consensus 51 -~rEi~il~~l~H-----pnI--v~l~~~~~~~~~~~lv~Ey~~~~l~~~~~~-~~~~l~~~-----~~~~~~~qll~~l 116 (303) T cd07869 51 -IREASLLKGLKH-----ANI--VLLHDIIHTKETLTLVFEYVHTDLCQYMDK-HPGGLHPE-----NVKLFLFQLLRGL 116 (303) T ss_pred -HHHHHHHHHCCC-----CCE--EEEEEEECCCCEEEEEEECCCCHHHHHHHH-CCCCCCHH-----HHHHHHHHHHHHH T ss_conf -999999986799-----898--279888725985899996366138999996-56999999-----9999999999999 Q ss_pred ---HHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC Q ss_conf ---7448661787862289802895357434031216 Q gi|254780623|r 279 ---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL 312 (517) Q Consensus 279 ---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l 312 (517) -..|+.|-|.-|.||+++.+|.+-+.|||+.... T Consensus 117 ~ylH~~~IiHRDlKp~NILl~~~~~vKi~DFGla~~~ 153 (303) T cd07869 117 SYIHQRYILHRDLKPQNLLISDTGELKLADFGLARAK 153 (303) T ss_pred HHHHHCCCEEEECCHHHEEECCCCCEEEEECCCCCCC T ss_conf 9998789168666756579889998999774652316 No 238 >cd05040 PTKc_Ack_like Catalytic Domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase. Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and Probab=98.55 E-value=4.3e-07 Score=74.16 Aligned_cols=142 Identities=18% Similarity=0.202 Sum_probs=90.9 Q ss_pred HHHHHHHHHHHHHHHEECCCCCC--EEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872--3687640310468877778899987532114685433469179999999887888 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYR--KVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME 202 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~--~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E 202 (517) |+|+.|+-|.||+|++++.+ |+ +||||+.++.-.. + .+ T Consensus 1 ~~iG~G~fg~Vy~~~~~~~~-~~~~~VAvK~~~~~~~~-----------------------------~----------~~ 40 (257) T cd05040 1 KKLGDGSFGVVRRGEWSTSG-GKVIPVAVKCLKSDKLS-----------------------------D----------IM 40 (257) T ss_pred CCCCCCCCCEEEEEEEECCC-CEEEEEEEEEECHHCCH-----------------------------H----------HH T ss_conf 96955888789999997899-98989999998810054-----------------------------5----------89 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCC-CCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHC-CCHH---HHHHHHHHHHHHH Q ss_conf 65599998898720244677664-30000102217833530024786324267733200-2256---8999999999998 Q gi|254780623|r 203 MDLRLEAAAFSEMAENTVKDQGF-RVPKIDWNRTERDVITMEWIDGVKISDTEKLRACG-HDLE---RLSVTLVQSFLLH 277 (517) Q Consensus 203 lD~~~Ea~n~~~~~~~~~~~~~v-~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~-~d~~---~la~~l~~~~~~q 277 (517) -+|.+|+.-+.+++. |.| .+=.++. +.+-.+||||++|-++.+.-.....+ .... .++..++++. .- T Consensus 41 ~~f~~E~~il~~l~H-----pnIv~l~g~~~--~~~~~iv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~~qia~aL-~y 112 (257) T cd05040 41 DDFLKEAAIMHSLDH-----ENLIRLYGVVL--THPLMMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGM-RY 112 (257) T ss_pred HHHHHHHHHHHHCCC-----CCEEEEEEEEE--CCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHH-HH T ss_conf 999999999986899-----89820889997--39789999868899999999744788889999999999999999-99 Q ss_pred HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 9744866178786228980289535743403121698 Q gi|254780623|r 278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) +-..|+.|.|.-|.||+++.++++-+-|||+...++. T Consensus 113 LH~~~ivHrDlKp~NiLl~~~~~~Kl~DFG~a~~~~~ 149 (257) T cd05040 113 LESKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQ 149 (257) T ss_pred HHHCCCCCCCCCCCCEEECCCCCEEEEECHHHCCCCC T ss_conf 8528964574571206786899589811411101678 No 239 >cd05089 PTKc_Tie1 Catalytic Domain of the Protein Tyrosine Kinase, Tie1. Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. Probab=98.55 E-value=5.8e-07 Score=73.12 Aligned_cols=142 Identities=15% Similarity=0.160 Sum_probs=83.7 Q ss_pred HHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 67666778888655550212888723687640310468877778899987532114685433469179999999887888 Q gi|254780623|r 123 FDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME 202 (517) Q Consensus 123 fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E 202 (517) |++.|++|+-|+||+|+++.......||||+.+....+. .. T Consensus 6 ~~~~IG~G~fG~Vyk~~~~~~g~~~~vavK~~~~~~~~~---------------------------------------~~ 46 (297) T cd05089 6 FEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASEN---------------------------------------DH 46 (297) T ss_pred EEEEEEECCCCEEEEEEEECCCEEEEEEEEEECCCCCHH---------------------------------------HH T ss_conf 986995178959999999379809999999977335847---------------------------------------89 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHH---------------HCCCHH- Q ss_conf 655999988987202446776643000010221--78335300247863242677332---------------002256- Q gi|254780623|r 203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRA---------------CGHDLE- 264 (517) Q Consensus 203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~---------------~~~d~~- 264 (517) -+|.+|++.+.++.+ .|.| =+.|.-+. +.-.|||||++|-.+.+.-.-.. .....+ T Consensus 47 ~~~~~E~~il~~l~~----HpnI--V~l~g~~~~~~~~~iV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 120 (297) T cd05089 47 RDFAGELEVLCKLGH----HPNI--INLLGACENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQ 120 (297) T ss_pred HHHHHHHHHHHHHCC----CCCE--EEEEEEECCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCHHHHHCCCCCCCCHHH T ss_conf 999999999987128----9988--8886798239878999970599879999973565544610222036657789999 Q ss_pred --HHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHE Q ss_conf --8999999999998974486617878622898028953574340312 Q gi|254780623|r 265 --RLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITG 310 (517) Q Consensus 265 --~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg 310 (517) .++..++.. +.-+-..|+.|-|.-|.||+++.++.+-+-|||+.. T Consensus 121 ~l~i~~qia~g-l~yLH~~~IiHRDLKp~NILl~~~~~~KI~DFGls~ 167 (297) T cd05089 121 LLQFASDVATG-MQYLSEKQFIHRDLAARNVLVGENLASKIADFGLSR 167 (297) T ss_pred HHHHHHHHHHH-HHHHHCCCCCCCCCCHHEEEECCCCCEEEEECCCCC T ss_conf 99999999999-998840991557566422899899988980156786 No 240 >cd07874 STKc_JNK3 The catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, s Probab=98.55 E-value=8.7e-08 Score=79.51 Aligned_cols=152 Identities=19% Similarity=0.243 Sum_probs=83.0 Q ss_pred HHHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH Q ss_conf 999867--666778888655550212888723687640310468877778899987532114685433469179999999 Q gi|254780623|r 119 LYCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALE 196 (517) Q Consensus 119 ~F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~ 196 (517) +...++ +.|+.||-|+||+|+-+ .+|+.||||+.+....+.- .. T Consensus 15 v~~RY~i~~~LG~G~fG~V~~a~d~--~t~~~vAiK~i~~~~~~~~--------------------------------~~ 60 (355) T cd07874 15 VLKRYQNLKPIGSGAQGIVCAAYDA--VLDRNVAIKKLSRPFQNQT--------------------------------HA 60 (355) T ss_pred HHHCEEEEEEEECCCCEEEEEEEEC--CCCCEEEEEEECHHHCCHH--------------------------------HH T ss_conf 2016188169521618499999988--9998999999892454979--------------------------------99 Q ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHH Q ss_conf 887888655999988987202-446776643000010221783353002478632426773320022568---9999999 Q gi|254780623|r 197 QVTKMEMDLRLEAAAFSEMAE-NTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQ 272 (517) Q Consensus 197 ~~l~~ElD~~~Ea~n~~~~~~-~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~ 272 (517) ..+. +|..-++.+.. |.-..-++..|+-..+....-.+||||++|-- .+. + ....+... +...++. T Consensus 61 ~~~~------rEi~il~~l~hpnIV~~~~~f~~~~~~~~~~~~yivmE~~~~~l-~~~--~-~~~l~~~~i~~i~~qil~ 130 (355) T cd07874 61 KRAY------RELVLMKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMDANL-CQV--I-QMELDHERMSYLLYQMLC 130 (355) T ss_pred HHHH------HHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCH-HHH--H-HHCCCHHHHHHHHHHHHH T ss_conf 9999------99999986799698919899841774211561799997059988-999--8-734999999999999999 Q ss_pred HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 9999897448661787862289802895357434031216989 Q gi|254780623|r 273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) + +.-+-..|+.|.|.-|.||+++.+|.+-++|||....++.. T Consensus 131 g-L~ylH~~gIiHRDLKPeNILl~~~~~vKl~DFGlA~~~~~~ 172 (355) T cd07874 131 G-IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTS 172 (355) T ss_pred H-HHHHHHCCCEECCCCHHHEEECCCCCEECCCCCCCCCCCCC T ss_conf 9-99998798253248778867868997401454402234787 No 241 >cd05592 STKc_nPKC_theta_delta STKc_nPKC_theta_delta: Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-del Probab=98.55 E-value=3.6e-07 Score=74.72 Aligned_cols=137 Identities=18% Similarity=0.263 Sum_probs=80.0 Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67788886555502128887236876403104688777788999875321146854334691799999998878886559 Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR 206 (517) Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~ 206 (517) |+.||-|.||.|+.+. +|+.||||+.+.... ++.+ +... . . T Consensus 3 lG~G~fG~V~la~~~~--t~~~~AiK~i~k~~~--~~~~----------------------------~~~~-~------~ 43 (316) T cd05592 3 LGKGSFGKVMLAELKG--TNEYYAIKALKKDVV--LEDD----------------------------DVEC-T------M 43 (316) T ss_pred EEECCCEEEEEEEECC--CCCEEEEEEECHHHC--CCCH----------------------------HHHH-H------H T ss_conf 6638893999999999--998999999827882--3714----------------------------7999-9------9 Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHC-CCH---HHHHHHHHHHHHHHHHH Q ss_conf 99988987202446776643000010221783--3530024786324267733200-225---68999999999998974 Q gi|254780623|r 207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACG-HDL---ERLSVTLVQSFLLHTLR 280 (517) Q Consensus 207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~-~d~---~~la~~l~~~~~~qi~~ 280 (517) .|...+.. .. +.|. |.+.|..+.++. .|||||++|-.+.+. +...+ .+- ..++..++.+ +.-+-. T Consensus 44 ~e~~il~~---~~-~hp~--Iv~l~~~f~~~~~~ylvmEy~~gGdL~~~--l~~~~~l~e~~a~~~~~qi~~a-L~yLH~ 114 (316) T cd05592 44 VERRVLIL---AW-EHPF--LTHLFCTFQTKEHLFFVMEYLNGGDLMFH--IQSSGRFDEARARFYAAEIICG-LQFLHK 114 (316) T ss_pred HHHHHHHH---HC-CCCC--EEEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHHH T ss_conf 99999998---47-9997--86699999989999999967899888999--8655999999999999999999-999997 Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 4866178786228980289535743403121 Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) .|+.|-|.-|.||+++.+|.+-+.|||+... T Consensus 115 ~~IiHRDlKPeNILld~~g~vKL~DFGlak~ 145 (316) T cd05592 115 KGIIYRDLKLDNVLLDRDGHIKIADFGMCKE 145 (316) T ss_pred CCCEEEECCCCCCCCCCCCCEEEEECCCCCC T ss_conf 8905311477665737899889820563300 No 242 >cd07877 STKc_p38alpha_MAPK14 The catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase subfamily. Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also Probab=98.54 E-value=3.3e-07 Score=75.06 Aligned_cols=156 Identities=16% Similarity=0.183 Sum_probs=84.0 Q ss_pred HCCCCHHHHHHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH Q ss_conf 04788999999867--6667788886555502128887236876403104688777788999875321146854334691 Q gi|254780623|r 111 ALKAPIEELYCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCF 188 (517) Q Consensus 111 elg~~~~~~F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~ 188 (517) |+++..=++=+.++ +.|++||-|+||+|+-+. +|+.||||+.+-....... T Consensus 7 ~~~~~~~~I~drY~i~~~IG~G~fG~Vy~a~d~~--tg~~vAiK~i~~~~~~~~~------------------------- 59 (345) T cd07877 7 ELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTK--TGLRVAVKKLSRPFQSIIH------------------------- 59 (345) T ss_pred ECCCEEECCCCCEEEEEEEECCCCEEEEEEEECC--CCCEEEEEEECCCCCCHHH------------------------- T ss_conf 7387357655472880297327084999999889--9989999998830005588------------------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCC-----HHCCCCEEEEECCCCCCCCHHHHHHHHCCCH Q ss_conf 79999999887888655999988987202446776643000010-----2217833530024786324267733200225 Q gi|254780623|r 189 SAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDW-----NRTERDVITMEWIDGVKISDTEKLRACGHDL 263 (517) Q Consensus 189 ~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~-----~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~ 263 (517) ... +.+|.+.+..++.- .-|.+-.+|. +....-.++||+. |..+.+.-. ...... T Consensus 60 -------~~~------~~rEi~iL~~l~Hp----nIv~l~d~f~~~~~~~~~~~~~iv~~~~-g~~L~~~~~--~~~l~e 119 (345) T cd07877 60 -------AKR------TYRELRLLKHMKHE----NVIGLLDVFTPARSLEEFNDVYLVTHLM-GADLNNIVK--CQKLTD 119 (345) T ss_pred -------HHH------HHHHHHHHHHCCCC----CCCCEEEEEECCCCCCCCCCEEEEEECC-CCCHHHHHH--CCCCCH T ss_conf -------999------99999999866799----9332677883166434477089999279-988999986--289999 Q ss_pred ---HHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf ---689999999999989744866178786228980289535743403121698 Q gi|254780623|r 264 ---ERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 264 ---~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) +.++..++.+ +.-+-..|+.|.|.-|.||+++.+|.+-+.|||.....+. T Consensus 120 ~~i~~i~~Qil~a-L~ylH~~gIiHRDIKPeNILl~~~~~vKL~DFGlAr~~~~ 172 (345) T cd07877 120 DHVQFLIYQILRG-LKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDD 172 (345) T ss_pred HHHHHHHHHHHHH-HHHHHHCCCEECCCCHHHEEECCCCCEEEEECCCCCCCCC T ss_conf 9999999999999-9999988845455774552456778779996367754510 No 243 >cd07837 STKc_CdkB_plant The catalytic domain of the Serine/Threonine Kinase, Plant Cyclin-Dependent protein Kinase CdkB subfamily. Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrat Probab=98.54 E-value=1.5e-07 Score=77.78 Aligned_cols=141 Identities=20% Similarity=0.283 Sum_probs=76.8 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.|+-|+||+|.-+. +|+.||||+.+-...+. ...... T Consensus 7 ~~lG~G~fg~V~~a~~~~--t~~~vAiK~~~~~~~~~--------------------------------~~~~~~----- 47 (295) T cd07837 7 EKIGEGTYGKVYKARDKN--TGKLVALKKTRLEMDEE--------------------------------GIPPTA----- 47 (295) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHHHHH--------------------------------HHHHHH----- T ss_conf 698326185999999999--99899999970352023--------------------------------448999----- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCH--HCCC-----CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 59999889872024467766430000102--2178-----3353002478632426773320022568999999999998 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWN--RTER-----DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH 277 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~--~st~-----~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q 277 (517) .+|.+.++.+.+ .+. |.+.+.- ..+. -.+||||++|- +.+.-..... ...+.+.+..+..+++| T Consensus 48 -~rEi~il~~l~~----~~~--i~~~~~~~~~~~~~~~~~~~iv~E~~~~~-l~~~~~~~~~-~~~~~l~e~~~~~~~~q 118 (295) T cd07837 48 -LREISLLQMLSE----SIY--IVRLLDVEHVEEKNGKPSLYLVFEYLDSD-LKKFMDSNGR-GPGRPLPAKTIKSFMYQ 118 (295) T ss_pred -HHHHHHHHHCCC----CCC--EEEEEEEEEECCCCCCEEEEEEEECCCCC-HHHHHHHHCC-CCCCCCCHHHHHHHHHH T ss_conf -999999986147----997--89886457512678955899999548986-7999998354-57888899999999999 Q ss_pred H-------HHCCEECCCCCCCEEEEECC-CCEEEEECCHHEECC Q ss_conf 9-------74486617878622898028-953574340312169 Q gi|254780623|r 278 T-------LRDGFFHADLHPGNLFVDSK-GYIVAVDMGITGRLS 313 (517) Q Consensus 278 i-------~~~GfFHaDPHpGNi~v~~d-g~i~~lDfG~vg~l~ 313 (517) + -..|+.|.|.-|.||+++++ |.+-+.|||+...++ T Consensus 119 l~~al~~lH~~~IiHRDlKPeNILi~~~~~~iKl~DFGls~~~~ 162 (295) T cd07837 119 LLKGVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLGRAFS 162 (295) T ss_pred HHHHHHHHHHCCCEECCCCHHHEEECCCCCEEEEECCCCHHHCC T ss_conf 99999999988866742776662462789879993257233214 No 244 >cd07853 STKc_NLK The catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase subfamily. Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate Probab=98.54 E-value=2.5e-07 Score=75.98 Aligned_cols=143 Identities=20% Similarity=0.249 Sum_probs=79.5 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +|||.||-|+||+|+=+. +|+.||||...- +. .+.. ..+.+ T Consensus 6 r~IG~G~fG~Vy~a~d~~--tg~~VAiKki~~-~~----~~~~---------------------------~~~~~----- 46 (372) T cd07853 6 RPIGYGAFGVVWSVTDPR--DGKRVALKKMPN-VF----QNLV---------------------------SCKRV----- 46 (372) T ss_pred EECCCCCCEEEEEEEECC--CCCEEEEEEECC-CC----CCHH---------------------------HHHHH----- T ss_conf 463037683999999789--998999999893-00----3868---------------------------89999----- Q ss_pred HHHHHHHHHHHHC-CCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH----- Q ss_conf 5999988987202-4467766430000102217833530024786324267733200225689999999999989----- Q gi|254780623|r 205 LRLEAAAFSEMAE-NTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT----- 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~-~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi----- 278 (517) .+|.+.+..++. |.-..-++.-|.- .++-..-.+|||+++|- +.+. +... +.+.+.-+..|+.|+ T Consensus 47 -~rEi~iL~~l~H~NIv~~~~v~~~~~-~~~~~~iyiv~el~~~d-L~~~--i~~~----~~l~~~~i~~i~~Qil~aL~ 117 (372) T cd07853 47 -FRELKMLCFFKHDNVLSALDILQPPH-IDPFEEIYVVTELMQSD-LHKI--IVSP----QPLSSDHVKVFLYQILRGLK 117 (372) T ss_pred -HHHHHHHHHCCCCCCCCEEEEEECCC-CCCCEEEEEEEECCCCC-HHHH--HHHC----CCCCHHHHHHHHHHHHHHHH T ss_conf -99999998679989891899995178-77622799998158975-8999--9746----99999999999999999999 Q ss_pred --HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf --7448661787862289802895357434031216989 Q gi|254780623|r 279 --LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 279 --~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) -..|+.|-|.-|+||+++.++.+-+.|||+....+++ T Consensus 118 ylHs~~IiHRDLKP~NILl~~~~~lKI~DFGlAr~~~~~ 156 (372) T cd07853 118 YLHSAGILHRDIKPGNLLVNSNCVLKICDFGLARVEEPD 156 (372) T ss_pred HHHHCCCEECCCCHHHEEECCCCCEEEEECCCCEECCCC T ss_conf 997599152778779868878998897222555322688 No 245 >cd07852 STKc_MAPK15 The catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15 subfamily. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extrac Probab=98.54 E-value=6.5e-08 Score=80.50 Aligned_cols=147 Identities=18% Similarity=0.251 Sum_probs=84.5 Q ss_pred HHHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH Q ss_conf 999867--666778888655550212888723687640310468877778899987532114685433469179999999 Q gi|254780623|r 119 LYCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALE 196 (517) Q Consensus 119 ~F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~ 196 (517) +...|+ +.|+.||-|.||+|+-+. +|+.||||+....... . .. . T Consensus 5 i~~rY~i~~~iG~G~fG~V~~a~~~~--t~~~vAiK~i~~~~~~----~-----------------------~~-----~ 50 (337) T cd07852 5 ILRKYEILQKLGKGAYGIVWKAIDRK--TGEVVALKKIFDAFRN----A-----------------------TD-----A 50 (337) T ss_pred HHHCCEEEEEEECCCCEEEEEEEECC--CCCEEEEEEECHHHCC----H-----------------------HH-----H T ss_conf 65228870698427382999999889--9989999998826529----5-----------------------88-----9 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH---CCC-CEEEEECCCCCCCCHHHHHHHHCCC---HHHHHHH Q ss_conf 88788865599998898720244677664300001022---178-3353002478632426773320022---5689999 Q gi|254780623|r 197 QVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR---TER-DVITMEWIDGVKISDTEKLRACGHD---LERLSVT 269 (517) Q Consensus 197 ~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~---st~-~VLvmE~i~G~~i~d~~~l~~~~~d---~~~la~~ 269 (517) .... +|...+.+++ +.+. |.+.|.-+ ... -.|||||++|. +.+. ++..... .+.++.. T Consensus 51 ~~~~------rEi~~l~~l~----~Hpn--Iv~l~~~~~~~~~~~~ylV~Ey~~~~-L~~~--i~~~~~~e~~~~~i~~q 115 (337) T cd07852 51 QRTF------REIMFLQELG----DHPN--IVKLLNVIKAENDKDIYLVFEYMETD-LHAV--IRANILEDIHKRYIMYQ 115 (337) T ss_pred HHHH------HHHHHHHHHH----CCCC--EEEEEEEEEECCCCEEEEEEECCCCC-HHHH--HHCCCCCHHHHHHHHHH T ss_conf 9999------9999999840----7999--70698999816997799999347998-8999--86389999999999999 Q ss_pred HHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 9999999897448661787862289802895357434031216989 Q gi|254780623|r 270 LVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 270 l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) ++.+ +.-+-..|+.|.|.-|.||+++.+|++-+.|||+...+++. T Consensus 116 il~a-L~ylH~~gIiHRDIKPeNILl~~~~~iKl~DFGla~~~~~~ 160 (337) T cd07852 116 LLKA-LKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLARSLSQL 160 (337) T ss_pred HHHH-HHHHHHCCCCCCCCCHHHEEECCCCCCCCCCCCEEEECCCC T ss_conf 9999-99998788541778668868868898512445412340345 No 246 >cd06631 STKc_YSK4 Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Probab=98.54 E-value=5.2e-08 Score=81.23 Aligned_cols=144 Identities=17% Similarity=0.197 Sum_probs=85.6 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-|+.||-|.||+|... .|+.||||....+.. +....-+ +.-+ T Consensus 6 ~~lG~G~fg~V~~~~~~---~g~~vAiK~v~~~~~---------------------------~~~~~~~-------~~~~ 48 (265) T cd06631 6 EVLGKGAYGTVYCGLTN---QGQLIAVKQVELDTS---------------------------NVLAAEK-------EYEK 48 (265) T ss_pred CEEECCCCCEEEEEEEC---CCCEEEEEEEEECCC---------------------------CHHHHHH-------HHHH T ss_conf 48801789199999958---999999999981553---------------------------2145599-------9999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHH----HHHHHHHHHHHHHHHH Q ss_conf 599998898720244677664300001022178335300247863242677332002256----8999999999998974 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLE----RLSVTLVQSFLLHTLR 280 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~----~la~~l~~~~~~qi~~ 280 (517) +.+|+.-++.++. ..-|.+-.++.+ .+.-.+||||++|-.+.+. ++..+.-.. .++..++.+. .-+-. T Consensus 49 ~~~Ei~il~~l~H----pniv~~~~~~~~-~~~~~ivmEy~~gg~L~~~--l~~~~~~~e~~~~~~~~qi~~gl-~yLH~ 120 (265) T cd06631 49 LQEEVDLLKSLKH----VNIVQYLGTCLD-DNTISIFMEFVPGGSISSI--LNRFGPLPEPVFCKYTKQILDGV-AYLHN 120 (265) T ss_pred HHHHHHHHHHCCC----CCEEEEEEEEEE-CCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHHH-HHHHH T ss_conf 9999999986899----997269999988-9989999991598948999--98649999999999999999999-99998 Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf 486617878622898028953574340312169 Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) .|+.|-|.-|.||+++++|.+-+.|||+...++ T Consensus 121 ~giiHRDlKp~NiLl~~~~~vKl~DFG~ak~~~ 153 (265) T cd06631 121 NCVVHRDIKGNNVMLMPNGIIKLIDFGCARRLA 153 (265) T ss_pred CCCCCCCCCHHHEEECCCCCEEEECCCCCCCCC T ss_conf 888313278899238899989990375761444 No 247 >cd05621 STKc_ROCK2 STKc_ROCK2: Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found to play a role in stress fiber and focal adhesion formation. It is prominently expressed in the brain Probab=98.54 E-value=1.9e-07 Score=76.89 Aligned_cols=142 Identities=13% Similarity=0.203 Sum_probs=89.5 Q ss_pred HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 99867--6667788886555502128887236876403104688777788999875321146854334691799999998 Q gi|254780623|r 120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ 197 (517) Q Consensus 120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 197 (517) .+.|+ +-|+.||-|+||.|+-++ +|+.+|+|+..-.- . .++ .-.. T Consensus 42 ~dDFeiik~IG~GsFG~V~lv~~k~--tg~~yAiK~i~K~~--~--------------~~~---------------~~~~ 88 (370) T cd05621 42 AEDYDVVKVIGRGAFGEVQLVRHKS--SQKVYAMKLLSKFE--M--------------IKR---------------SDSA 88 (370) T ss_pred HHHCEEEEEEEECCCCEEEEEEECC--CCCEEEEEEEEHHH--H--------------HHH---------------HHHH T ss_conf 5400586688507684899999989--99899999998899--6--------------436---------------7899 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 87888655999988987202446776643000010221783--3530024786324267733200225689999999999 Q gi|254780623|r 198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFL 275 (517) Q Consensus 198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~ 275 (517) .+.+ |..-+... ++|. |-+.|..+.+++ .|||||++|-.+.+. +...+. -+..+..|+ T Consensus 89 ~~~~------E~~il~~~-----~hp~--IV~l~~~Fqd~~~lylVmEy~~GGdL~~l--l~~~~~-----~E~~a~~y~ 148 (370) T cd05621 89 FFWE------ERDIMAFA-----NSPW--VVQLFCAFQDDKYLYMVMEYMPGGDLVNL--MSNYDV-----PEKWAKFYT 148 (370) T ss_pred HHHH------HHHHHHHC-----CCCC--CCCEEEEEEECCEEEEEEECCCCCCHHHH--HHCCCC-----CHHHHHHHH T ss_conf 9999------99999857-----9998--89189999849989999858999749999--881898-----999999999 Q ss_pred HH-------HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 98-------9744866178786228980289535743403121698 Q gi|254780623|r 276 LH-------TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 276 ~q-------i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) .| +-..|+.|-|..|.||+++.+|.+-+.|||....+++ T Consensus 149 ~qi~~AL~yLH~~~IiHRDLKPeNILld~~g~iKL~DFGla~~~~~ 194 (370) T cd05621 149 AEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDE 194 (370) T ss_pred HHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCEEECCCCEEEEECC T ss_conf 9999999998538678566673221225888735324521578447 No 248 >cd07879 STKc_p38delta_MAPK13 The catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MA Probab=98.54 E-value=1.6e-07 Score=77.56 Aligned_cols=142 Identities=17% Similarity=0.240 Sum_probs=80.3 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.||+|+-|+||+|+-+ .+|+.||||+.+....... +.... T Consensus 21 ~~IG~G~fG~Vy~a~d~--~tg~~vAiK~i~~~~~~~~--------------------------------~~~~~----- 61 (342) T cd07879 21 KQVGSGAYGSVCSAIDK--RTGEKVAIKKLSRPFQSEI--------------------------------FAKRA----- 61 (342) T ss_pred EEEECCCCEEEEEEEEC--CCCCEEEEEEECHHHCCHH--------------------------------HHHHH----- T ss_conf 79722718499999988--9998999999871122779--------------------------------99999----- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCC-----HHCCCCEEEEECCCCCCCCHHHHHHHHCCCH---HHHHHHHHHHHHH Q ss_conf 5999988987202446776643000010-----2217833530024786324267733200225---6899999999999 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDW-----NRTERDVITMEWIDGVKISDTEKLRACGHDL---ERLSVTLVQSFLL 276 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~-----~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~---~~la~~l~~~~~~ 276 (517) .+|...+..+.. ..-|.+-.++. +-...-.+||||+.+ +........... +.++..++.+ +. T Consensus 62 -~rEi~il~~l~H----pnIv~l~~~~~~~~~~~~~~~~yiv~e~~~~----~l~~~~~~~l~e~~i~~i~~qil~a-L~ 131 (342) T cd07879 62 -YRELTLLKHMQH----ENVIGLLDVFTSAVSGDEFQDFYLVMPYMQT----DLQKIMGHPLSEDKVQYLVYQMLCG-LK 131 (342) T ss_pred -HHHHHHHHHCCC----CCEEEEEEEEECCCCCCCCCEEEEEECCCCC----CHHHHHCCCCCHHHHHHHHHHHHHH-HH T ss_conf -999999997469----9830047888504656666469999677524----3999965999999999999999999-99 Q ss_pred HHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 897448661787862289802895357434031216989 Q gi|254780623|r 277 HTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 277 qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) -+-..|+.|.|.-|.||+++.+|.+-+.|||+....+.. T Consensus 132 ylH~~gIiHRDlKPeNILl~~~~~vKL~DFGlAr~~~~~ 170 (342) T cd07879 132 YIHSAGIIHRDLKPGNLAVNEDCELKILDFGLARHADAE 170 (342) T ss_pred HHHHCCCEECCCCHHHEEECCCCCEEEEECCCCCCCCCC T ss_conf 998788455768668846867786699856577447876 No 249 >cd05101 PTKc_FGFR2 Catalytic Domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to Probab=98.53 E-value=3.1e-07 Score=75.25 Aligned_cols=155 Identities=14% Similarity=0.163 Sum_probs=92.6 Q ss_pred CCHHHHHHHHH--HHHHHHHHHHHHHHHEEC--C---CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 88999999867--666778888655550212--8---8872368764031046887777889998753211468543346 Q gi|254780623|r 114 APIEELYCEFD--DPIAAASIAQVHPAVVHD--I---NGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRL 186 (517) Q Consensus 114 ~~~~~~F~~fd--ePlasASiaQVh~A~l~d--~---~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~ 186 (517) ..|+--++.|+ +.|++||-|+||+|+..- . ..+..||||+.+.+..+ .| T Consensus 8 ~~wei~~~~~~l~~~lG~G~FG~Vy~a~~~g~~~~~~~~~~~vAvK~l~~~~~~---~~--------------------- 63 (304) T cd05101 8 PRWEFSRDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATE---KD--------------------- 63 (304) T ss_pred CCCEECHHHEEECCEEECCCCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCH---HH--------------------- T ss_conf 875203899598368931647199998980666777750069999997865798---99--------------------- Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHH------ Q ss_conf 917999999988788865599998898720244677664300001022--178335300247863242677332------ Q gi|254780623|r 187 CFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRA------ 258 (517) Q Consensus 187 ~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~------ 258 (517) ..+|.+|++-+..+.+ .+.| =+.|.-. ...-.+||||++|-++.+.-.-.. T Consensus 64 ---------------~~~~~~E~~~l~~l~~----HpNI--V~~~g~~~~~~~~~iv~Ey~~~GsL~~~l~~~~~~~~~~ 122 (304) T cd05101 64 ---------------LSDLVSEMEMMKMIGK----HKNI--INLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEY 122 (304) T ss_pred ---------------HHHHHHHHHHHHHHCC----CCCE--EEEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCC T ss_conf ---------------9999999999985148----9997--379999998998999998179998999998638864221 Q ss_pred ---------HCCCHHH---HHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf ---------0022568---9999999999989744866178786228980289535743403121698 Q gi|254780623|r 259 ---------CGHDLER---LSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 259 ---------~~~d~~~---la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) .....+. ++..++.. +.-+-..|+.|.|.-|.||+++.++.+-+-|||+...++. T Consensus 123 ~~~~~~~~~~~l~~~~~~~~~~qia~g-l~yLH~~~iiHRDLK~~NiLl~~~~~~Ki~DFGla~~~~~ 189 (304) T cd05101 123 SYDIARVPDEQMTFKDLVSCTYQVARG-MEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDVNN 189 (304) T ss_pred CCHHHCCCCCCCCHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCHHHEEECCCCCEEEEEEECCEECCC T ss_conf 001102642236899999999999999-9999748865787777885575899589854011203577 No 250 >cd05604 STKc_SGK3 STKc_SGK3: Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Probab=98.53 E-value=5e-07 Score=73.63 Aligned_cols=137 Identities=17% Similarity=0.181 Sum_probs=79.7 Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67788886555502128887236876403104688777788999875321146854334691799999998878886559 Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR 206 (517) Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~ 206 (517) |+.||-|+||.|+-+. +|+.||+||.+.... . +- .....+..|.+ T Consensus 3 LG~G~fG~V~la~~k~--tg~~~AiKvi~k~~~----------------~----------~~-----~~~~~~~~E~~-- 47 (325) T cd05604 3 IGKGSFGKVLLAKRKL--DGKCYAVKVLQKKIV----------------L----------NR-----KEQKHIMAERN-- 47 (325) T ss_pred EEECCCEEEEEEEECC--CCCEEEEEEECHHHC----------------C----------CH-----HHHHHHHHHHH-- T ss_conf 8128894999999889--998999999816783----------------5----------98-----99999999999-- Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHC-CCH---HHHHHHHHHHHHHHHHH Q ss_conf 9998898720244677664300001022178--33530024786324267733200-225---68999999999998974 Q gi|254780623|r 207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACG-HDL---ERLSVTLVQSFLLHTLR 280 (517) Q Consensus 207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~-~d~---~~la~~l~~~~~~qi~~ 280 (517) .+ .++. ++|.| -+.|..+.++ -.|||||++|-.+.+. +...+ .+- +.++..++.+ +.-+-. T Consensus 48 ----il---~~~~-~hp~I--v~l~~~f~~~~~lylVmEy~~gGdL~~~--l~~~~~l~e~~a~~y~~qi~~a-L~yLH~ 114 (325) T cd05604 48 ----VL---LKNV-KHPFL--VGLHYSFQTTEKLYFVLDFVNGGELFFH--LQRERSFPEPRARFYAAEIASA-LGYLHS 114 (325) T ss_pred ----HH---HHHC-CCCCC--CEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHHH T ss_conf ----99---9878-99988--9399999989999999978889889999--8745899999999999999999-999987 Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 4866178786228980289535743403121 Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) .|+.|-|.-|.||+++.+|.+.+.|||+... T Consensus 115 ~~IiHRDLKPeNILl~~~g~ikL~DFGlak~ 145 (325) T cd05604 115 INIVYRDLKPENILLDSQGHVVLTDFGLCKE 145 (325) T ss_pred CCCEECCCCCCCCCCCCCCCEEEEECCHHHC T ss_conf 8914302275442426899789743231010 No 251 >cd05596 STKc_ROCK STKc_ROCK: Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesio Probab=98.53 E-value=2.2e-07 Score=76.42 Aligned_cols=143 Identities=15% Similarity=0.271 Sum_probs=91.0 Q ss_pred HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 99867--6667788886555502128887236876403104688777788999875321146854334691799999998 Q gi|254780623|r 120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ 197 (517) Q Consensus 120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 197 (517) .+.|+ +-|+.||-|+|+.|+-++ +|+.+|+|+.+..- +.+ ..-.. T Consensus 42 ~dDFe~lk~lG~G~FG~V~lv~~k~--tg~~yA~K~i~K~~----------------~~~---------------~~~~~ 88 (370) T cd05596 42 AEDFDVIKVIGRGAFGEVQLVRHKS--SKQVYAMKLLSKFE----------------MIK---------------RSDSA 88 (370) T ss_pred HHHCEEEEEEEECCCCEEEEEEECC--CCCEEEEEEEEHHH----------------HHH---------------HHHHH T ss_conf 7885682268507284999999989--99899999987899----------------652---------------67899 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 87888655999988987202446776643000010221783--3530024786324267733200225689999999999 Q gi|254780623|r 198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFL 275 (517) Q Consensus 198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~ 275 (517) .+.+|. .-+... ++|. |.+.|..+-+++ .+||||++|-.+.+. +.... +.+.-+..|+ T Consensus 89 ~~~~E~------~il~~~-----~hp~--IV~l~~~Fqd~~~lylVmEy~~GGdL~~l--l~~~~-----l~E~~a~~y~ 148 (370) T cd05596 89 FFWEER------DIMAHA-----NSEW--IVQLHYAFQDDKYLYMVMEYMPGGDLVNL--MSNYD-----IPEKWARFYT 148 (370) T ss_pred HHHHHH------HHHHHC-----CCCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHCCC-----CCHHHHHHHH T ss_conf 999999------999867-----9998--78489999869999999948999748999--87379-----8999999999 Q ss_pred HHH-------HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 989-------7448661787862289802895357434031216989 Q gi|254780623|r 276 LHT-------LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 276 ~qi-------~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) .|+ -..|+.|-|.-|.||+++.+|.+-+.|||....++.. T Consensus 149 aqi~~aL~yLH~~~iiHRDLKPeNiLld~~G~iKL~DFGla~~~~~~ 195 (370) T cd05596 149 AEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDAN 195 (370) T ss_pred HHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEECCHHHHEEECCC T ss_conf 99999999980086782257776531147886640352561463578 No 252 >cd05607 STKc_GRK7 STKc_GRK7: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation Probab=98.53 E-value=3.3e-07 Score=74.99 Aligned_cols=141 Identities=17% Similarity=0.274 Sum_probs=84.5 Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67788886555502128887236876403104688777788999875321146854334691799999998878886559 Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR 206 (517) Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~ 206 (517) |+.|+-|+||+|+-+. +|+.||||+....- + .. . +.... .. T Consensus 1 lG~G~fg~V~~~~~~~--tg~~~AiK~i~k~~---~--------------~~--~------------~~~~~------~~ 41 (277) T cd05607 1 LGKGGFGEVCAVQVKN--TGKMYACKKLDKKR---L--------------KK--K------------SGEKM------AL 41 (277) T ss_pred CCCCCCEEEEEEEECC--CCCEEEEEEEEHHH---H--------------CC--H------------HHHHH------HH T ss_conf 9778456999999989--99899999981789---1--------------44--5------------78999------99 Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHH-HHHHHHCCCHHHH---HHHHHHHHHHHHHH Q ss_conf 9998898720244677664300001022178--3353002478632426-7733200225689---99999999998974 Q gi|254780623|r 207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDT-EKLRACGHDLERL---SVTLVQSFLLHTLR 280 (517) Q Consensus 207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~-~~l~~~~~d~~~l---a~~l~~~~~~qi~~ 280 (517) .|...+.++.. |. |.+.|..+.++ -.|||||++|-.+.+. ......+.+...+ +..++.+. .-+-. T Consensus 42 ~E~~il~~l~h-----p~--iv~l~~~~~~~~~~~lvmE~~~ggdL~~~i~~~~~~~~~~~~~~~~~~qi~~al-~ylH~ 113 (277) T cd05607 42 LEKEILEKVNS-----PF--IVNLAYAFESKTHLCLVMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGI-LHLHS 113 (277) T ss_pred HHHHHHHHCCC-----CC--CCCEEEEEEECCEEEEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHH-HHHHH T ss_conf 99999986799-----98--991878998799899999805898089999853778999999999999999999-99986 Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 4866178786228980289535743403121698 Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) .|+.|-|.-|.||+++.+|.+-+.|||+...++. T Consensus 114 ~~IiHRDlKPeNILl~~~g~~Kl~DFGla~~~~~ 147 (277) T cd05607 114 MDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKD 147 (277) T ss_pred CCCCCCCCCHHHCCCCCCCCEEEEECCEEEECCC T ss_conf 8955254777871305789779845570268689 No 253 >cd05093 PTKc_TrkB Catalytic Domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B. Protein Tyrosine Kinase (PTK) family; Tropomyosin related kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly Probab=98.52 E-value=2.3e-07 Score=76.25 Aligned_cols=144 Identities=13% Similarity=0.183 Sum_probs=86.6 Q ss_pred HHHHHHHHHHHHHHHHEECC---CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 76667788886555502128---887236876403104688777788999875321146854334691799999998878 Q gi|254780623|r 124 DDPIAAASIAQVHPAVVHDI---NGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTK 200 (517) Q Consensus 124 dePlasASiaQVh~A~l~d~---~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~ 200 (517) .+.|++||-|+||+|+++.. ..+..||||+.+..-. . T Consensus 10 ~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~------------------------------~---------- 49 (288) T cd05093 10 KRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASD------------------------------N---------- 49 (288) T ss_pred EEEECCCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCH------------------------------H---------- T ss_conf 359804768299999980577687667999999587685------------------------------8---------- Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHH------------HCCCH---HH Q ss_conf 8865599998898720244677664300001022178335300247863242677332------------00225---68 Q gi|254780623|r 201 MEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRA------------CGHDL---ER 265 (517) Q Consensus 201 ~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~------------~~~d~---~~ 265 (517) ..-+|.+|++.+.+++.- .-|.+=.++.+ ...-.+||||++|-.+.+.-.-+. ...+. .. T Consensus 50 ~~~~~~~E~~il~~l~Hp----nIV~~~g~~~~-~~~~~iv~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (288) T cd05093 50 ARKDFHREAELLTNLQHE----HIVKFYGVCVE-GDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLH 124 (288) T ss_pred HHHHHHHHHHHHHHCCCC----CCCCEEEEEEE-CCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 999999999999867998----87738789967-9989999980699908999987086410001357766689999999 Q ss_pred HHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf 999999999998974486617878622898028953574340312169 Q gi|254780623|r 266 LSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 266 la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) ++..++... .-+-..|+.|-|.-|.||+++.++.+-+.|||+...+. T Consensus 125 i~~qia~gl-~yLH~~~iiHRDLKp~NILl~~~~~~Ki~DFGls~~~~ 171 (288) T cd05093 125 IAQQIAAGM-VYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVY 171 (288) T ss_pred HHHHHHHHH-HHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCC T ss_conf 999999999-99844894678777132899999939982155573767 No 254 >cd06624 STKc_ASK Serine/threonine kinases (STKs), apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4 Probab=98.52 E-value=1.2e-07 Score=78.38 Aligned_cols=149 Identities=17% Similarity=0.128 Sum_probs=89.0 Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH Q ss_conf 999999867--666778888655550212888723687640310468877778899987532114685433469179999 Q gi|254780623|r 116 IEELYCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVR 193 (517) Q Consensus 116 ~~~~F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~ 193 (517) |+-.|.+++ +.|+.|+-|.||+|+-+. +++.||||+....- . T Consensus 3 ~~~~y~~~~~~~vIG~G~fg~Vy~~~~~~--~~~~vAiK~i~~~~-----------------------------~----- 46 (268) T cd06624 3 YEYEYDENGERVVLGKGTYGVVYAGRDLS--TQVRIAIKEIPERD-----------------------------S----- 46 (268) T ss_pred CCCCCCCCCCEEEEEECCCEEEEEEEECC--CCCEEEEEEECCCC-----------------------------H----- T ss_conf 66645679871899637482999999889--99599999987358-----------------------------5----- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCH--HCCCCEEEEECCCCCCCCHHHHHHHHCC--CH---HHH Q ss_conf 9998878886559999889872024467766430000102--2178335300247863242677332002--25---689 Q gi|254780623|r 194 ALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWN--RTERDVITMEWIDGVKISDTEKLRACGH--DL---ERL 266 (517) Q Consensus 194 e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~--~st~~VLvmE~i~G~~i~d~~~l~~~~~--d~---~~l 266 (517) +..+ ++.+|.+-+.+++. |.| -+.|.- -...-.+||||+.|-.+.+.-.-..... +. ..+ T Consensus 47 ~~~~------~~~~Ei~i~~~l~H-----pnI--v~~~~~~~~~~~~~iv~Ey~~gg~L~~~l~~~~~~~~~~e~~~~~~ 113 (268) T cd06624 47 RYSQ------PLHEEIALHSRLKH-----KNI--VQYLGSDSENGYFKIFMEQVPGGSLSALLRSKWGPLKDNESTIIFY 113 (268) T ss_pred HHHH------HHHHHHHHHHHCCC-----CCC--CEEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCCHHHHHHH T ss_conf 8899------99999999986899-----898--7399999789999999983899969999986168998579999999 Q ss_pred HHHHHHHHHHHHHHCCEECCCCCCCEEEEEC-CCCEEEEECCHHEECCH Q ss_conf 9999999999897448661787862289802-89535743403121698 Q gi|254780623|r 267 SVTLVQSFLLHTLRDGFFHADLHPGNLFVDS-KGYIVAVDMGITGRLSK 314 (517) Q Consensus 267 a~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~-dg~i~~lDfG~vg~l~~ 314 (517) +..++.+. .-+-..|+.|-|.-|.||+++. +|.+-+.|||+...++. T Consensus 114 ~~qi~~al-~ylH~~~IiHRDlKp~NiLl~~~~~~vKl~DFG~a~~~~~ 161 (268) T cd06624 114 TKQILEGL-KYLHDNQIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAG 161 (268) T ss_pred HHHHHHHH-HHHHHCCEEECCCCCCEEEEECCCCCEEEECCCCCEECCC T ss_conf 99999999-9998799676346621389947999889941877858677 No 255 >cd07866 STKc_BUR1 The catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 subfamily. Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen Probab=98.52 E-value=2.4e-07 Score=76.11 Aligned_cols=140 Identities=14% Similarity=0.202 Sum_probs=80.0 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-|++||-|.||+|.-+. +|+.||+|+..-.-. . + .+.... T Consensus 14 ~~iG~G~fg~V~~a~~~~--t~~~vAiK~i~~~~~---------------------~--------~---~~~~~~----- 54 (311) T cd07866 14 GKLGEGTFGEVYKARQIK--TGRVVALKKILMHNE---------------------K--------D---GFPITA----- 54 (311) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEECCCC---------------------C--------H---HHHHHH----- T ss_conf 698417090999999999--998999999860113---------------------3--------1---668999----- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCC-------HHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 5999988987202446776643000010-------221783353002478632426773320022568999999999998 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDW-------NRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH 277 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~-------~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q 277 (517) .+|++.+.+++. . .-|.+-.++. +....-.+||||++|--.+ .+...+. .+-+.-+..+++| T Consensus 55 -~~Ei~il~~l~H--~--nIi~~~~~~~~~~~~~~~~~~~~~~v~ey~~~dl~~---~l~~~~~---~l~~~~~~~i~~q 123 (311) T cd07866 55 -LREIKILKKLKH--P--NVVPLIDMAVERPDKSKRKRGSVYMVTPYMDHDLSG---LLENPSV---KLTESQIKCYMLQ 123 (311) T ss_pred -HHHHHHHHHCCC--C--CCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCHHH---HHHHCCC---CCCHHHHHHHHHH T ss_conf -999999997279--9--822035799973665445476699998156876788---9985478---9999999999999 Q ss_pred H-------HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 9-------744866178786228980289535743403121698 Q gi|254780623|r 278 T-------LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 278 i-------~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) + -..|+.|.|.-|.||+++.+|.+-+.|||+...++. T Consensus 124 ll~al~ylH~~~IiHRDlKPeNILl~~~~~~Kl~DFG~a~~~~~ 167 (311) T cd07866 124 LLEGINYLHENHILHRDIKAANILIDNQGILKIADFGLARPYDG 167 (311) T ss_pred HHHHHHHHHHCCCEECCCCHHHEEECCCCCEEECCCCCCEECCC T ss_conf 99999999978960111768995688999889855898737466 No 256 >cd05617 STKc_aPKC_zeta STKc_aPKC_zeta: Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeas Probab=98.51 E-value=1.8e-07 Score=77.08 Aligned_cols=138 Identities=14% Similarity=0.175 Sum_probs=81.4 Q ss_pred HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 66778888655550212888723687640310468877778899987532114685433469179999999887888655 Q gi|254780623|r 126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL 205 (517) Q Consensus 126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~ 205 (517) -|+.||-|.||.|+.+. +|+.+|+|+.+.... .. .+ -...+. T Consensus 2 ~LG~G~fg~V~~~~~~~--t~~~~AiK~i~k~~~---~~------------------------~~----~~~~~~----- 43 (327) T cd05617 2 VIGRGSYAKVLLVRLKK--NDQIYAMKVVKKELV---HD------------------------DE----DIDWVQ----- 43 (327) T ss_pred EEEECCCCEEEEEEECC--CCCEEEEEEECHHHC---CC------------------------HH----HHHHHH----- T ss_conf 54118190999999889--997999999847887---59------------------------89----999999----- Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHC-CCH---HHHHHHHHHHHHHHHH Q ss_conf 999988987202446776643000010221783--3530024786324267733200-225---6899999999999897 Q gi|254780623|r 206 RLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACG-HDL---ERLSVTLVQSFLLHTL 279 (517) Q Consensus 206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~-~d~---~~la~~l~~~~~~qi~ 279 (517) +|..-+.+.. .+|. |.+.|.-+.+++ .|||||++|-.+.+. +...+ .+. ..++..++.+ +.-+- T Consensus 44 -~E~~il~~~~----~hp~--Iv~l~~~f~~~~~lylVmEy~~gGdL~~~--l~~~~~l~e~~a~~~~~qi~~a-L~yLH 113 (327) T cd05617 44 -TEKHVFEQAS----SNPF--LVGLHSCFQTTSRLFLVIEYVNGGDLMFH--MQRQRKLPEEHARFYAAEICIA-LNFLH 113 (327) T ss_pred -HHHHHHHHCC----CCCC--EEEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHH T ss_conf -9999999705----8998--74799999989999999958899839999--9874999999999999999999-99998 Q ss_pred HCCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 44866178786228980289535743403121 Q gi|254780623|r 280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) ..|+.|-|.-|.||+++.+|.+.+.|||++.. T Consensus 114 ~~gIiHRDLKPeNILld~~g~iKL~DFGlak~ 145 (327) T cd05617 114 ERGIIYRDLKLDNVLLDADGHIKLTDYGMCKE 145 (327) T ss_pred HCEEEECCCCCCCEEECCCCCEEECCCCCCHH T ss_conf 39289375556660573699677323550110 No 257 >cd07849 STKc_ERK1_2_like The catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK ki Probab=98.51 E-value=3e-07 Score=75.38 Aligned_cols=144 Identities=17% Similarity=0.162 Sum_probs=80.5 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-|+.|+-|+||+|+-+. +|+.||||+..|.-.. .+.... T Consensus 11 ~~iG~G~fg~V~~a~~~~--t~~~vAiK~i~~~~~~---------------------------------~~~~~~----- 50 (336) T cd07849 11 SYIGEGAYGMVCSATHKP--TGVKVAIKKISPFEHQ---------------------------------TFCQRT----- 50 (336) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEECCCCH---------------------------------HHHHHH----- T ss_conf 797325086999999889--9989999998414481---------------------------------899999----- Q ss_pred HHHHHHHHHHHHC-CCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCH---HHHHHHHHHHHHHHHHH Q ss_conf 5999988987202-4467766430000102217833530024786324267733200225---68999999999998974 Q gi|254780623|r 205 LRLEAAAFSEMAE-NTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDL---ERLSVTLVQSFLLHTLR 280 (517) Q Consensus 205 ~~~Ea~n~~~~~~-~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~---~~la~~l~~~~~~qi~~ 280 (517) .+|.+.+.+++. |.-..-++..+.-| +..+.-.+||||++|. +.+. ++.....- +.++..++.+ +.-+-. T Consensus 51 -~rEi~il~~l~H~nIv~l~~v~~~~~~-~~~~~~yiv~E~~~~~-L~~~--~~~~~l~~~~i~~~~~qil~a-L~~lH~ 124 (336) T cd07849 51 -LREIKILRRFKHENIIGILDIIRPPSF-ESFNDVYIVQELMETD-LYKL--IKTQHLSNDHIQYFLYQILRG-LKYIHS 124 (336) T ss_pred -HHHHHHHHHCCCCCCCCEEEEEECCCC-CCCCEEEEEEECCCCC-HHHH--HHCCCCCHHHHHHHHHHHHHH-HHHHHH T ss_conf -999999987689994747889953773-5576689998327876-7999--862899999999999999999-999987 Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 4866178786228980289535743403121698 Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) .|+.|.|.-|.||+++.+|.+-+.|||....+++ T Consensus 125 ~~IiHRDiKPeNILl~~~~~vKL~DFGla~~~~~ 158 (336) T cd07849 125 ANVLHRDLKPSNLLLNTNCDLKICDFGLARIADP 158 (336) T ss_pred CCCEECCCCHHHEEECCCCCEEECCCCCCEECCC T ss_conf 8875356756877987999888424452210366 No 258 >cd05094 PTKc_TrkC Catalytic Domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C. Protein Tyrosine Kinase (PTK) family; Tropomyosin related kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n Probab=98.51 E-value=3.2e-07 Score=75.08 Aligned_cols=143 Identities=13% Similarity=0.217 Sum_probs=86.5 Q ss_pred HHHHHHHHHHHHHHHHEECC---CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 76667788886555502128---887236876403104688777788999875321146854334691799999998878 Q gi|254780623|r 124 DDPIAAASIAQVHPAVVHDI---NGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTK 200 (517) Q Consensus 124 dePlasASiaQVh~A~l~d~---~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~ 200 (517) .+.|++||-|+||+|+.++. ..+..||||+.+. + + +. T Consensus 10 ~~~iG~G~FG~Vy~a~~~~~~~~~~~~~vAvK~l~~------------------------~-----~-----------~~ 49 (291) T cd05094 10 KRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKD------------------------P-----T-----------LA 49 (291) T ss_pred EEEEECCCCCEEEEEEECCCCCCCCCEEEEEEEECC------------------------C-----C-----------HH T ss_conf 049813768699999981676377777999999787------------------------4-----5-----------57 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCC-CCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHH---------------HCCC-- Q ss_conf 886559999889872024467766-4300001022178335300247863242677332---------------0022-- Q gi|254780623|r 201 MEMDLRLEAAAFSEMAENTVKDQG-FRVPKIDWNRTERDVITMEWIDGVKISDTEKLRA---------------CGHD-- 262 (517) Q Consensus 201 ~ElD~~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~---------------~~~d-- 262 (517) .+-+|.+|++.+.+++. |. |.+=.++.+ ...-.|||||++|-.+.+.-.-+. ...+ T Consensus 50 ~~~~~~~E~~il~~l~H-----pnIV~l~g~~~~-~~~~~lv~Ey~~~G~L~~~l~~~~~~~~~~~~~~p~~~~~~l~~~ 123 (291) T cd05094 50 ARKDFQREAELLTNLQH-----EHIVKFYGVCGD-GDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLS 123 (291) T ss_pred HHHHHHHHHHHHHHCCC-----CCCCCEEEEEEE-CCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCHHCCCCCCHH T ss_conf 89999999999985899-----887738889823-998899999169992999998619741001234420104778999 Q ss_pred -HHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf -568999999999998974486617878622898028953574340312169 Q gi|254780623|r 263 -LERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 263 -~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) .-.++..++.+. .-+-..|+.|.|.-|.||+++.++.+-+.|||+...+. T Consensus 124 ~~~~i~~qia~gl-~yLH~~~iiHRDLKp~NILl~~~~~~Ki~DFGlsr~~~ 174 (291) T cd05094 124 QMLHIASQIASGM-VYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVY 174 (291) T ss_pred HHHHHHHHHHHHH-HHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCC T ss_conf 9999999999999-99975892656776405998799978994465654067 No 259 >cd05588 STKc_aPKC STKc_aPKC: Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytos Probab=98.51 E-value=3.9e-07 Score=74.48 Aligned_cols=137 Identities=18% Similarity=0.180 Sum_probs=80.5 Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67788886555502128887236876403104688777788999875321146854334691799999998878886559 Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR 206 (517) Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~ 206 (517) |+.||-|.||+|+-+. +|+.+|+|+.+.... ..+ + ....+.. T Consensus 3 LG~G~fG~V~~~~~~~--t~~~~AiK~i~k~~~---~~~------------------------~----~~~~~~~----- 44 (329) T cd05588 3 IGRGSYAKVLLVELKK--TRRIYAMKVIKKELV---NDD------------------------E----DIDWVQT----- 44 (329) T ss_pred EEECCCEEEEEEEECC--CCCEEEEEEECHHHC---CCH------------------------H----HHHHHHH----- T ss_conf 3038793999999889--998999999837887---798------------------------9----9999999----- Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHC-CC---HHHHHHHHHHHHHHHHHH Q ss_conf 99988987202446776643000010221783--3530024786324267733200-22---568999999999998974 Q gi|254780623|r 207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACG-HD---LERLSVTLVQSFLLHTLR 280 (517) Q Consensus 207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~-~d---~~~la~~l~~~~~~qi~~ 280 (517) |..-++.. .+.|. |.+.|.-+.+++ .|||||++|-.+.+. +...+ .. .+.++..++.+ +.-+-. T Consensus 45 -E~~il~~~----~~Hp~--Iv~l~~~f~~~~~lylvmEy~~GGdL~~~--l~~~~~l~e~~a~~~~~qi~~a-L~ylH~ 114 (329) T cd05588 45 -EKHVFETA----SNHPF--LVGLHSCFQTESRLFFVIEFVSGGDLMFH--MQRQRKLPEEHARFYSAEISLA-LNFLHE 114 (329) T ss_pred -HHHHHHHH----CCCCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHHH T ss_conf -99999971----59998--79599999989999999958898868999--9874999999999999999999-999986 Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 4866178786228980289535743403121 Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) .|+.|-|.-|.||+++.+|.+-+.|||++.. T Consensus 115 ~gIiHRDlKPeNILld~~g~iKL~DFGlak~ 145 (329) T cd05588 115 RGIIYRDLKLDNVLLDAEGHIKLTDYGMCKE 145 (329) T ss_pred CCCCCCCCCCCCEEECCCCCEEECCCCCCCC T ss_conf 5872363264210364789775233220110 No 260 >cd05618 STKc_aPKC_iota STKc_aPKC_iota: Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been i Probab=98.50 E-value=1.8e-07 Score=77.08 Aligned_cols=137 Identities=18% Similarity=0.177 Sum_probs=81.2 Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67788886555502128887236876403104688777788999875321146854334691799999998878886559 Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLR 206 (517) Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~ 206 (517) |+.||-|.||.|+-+. +|+.||||+.+.... ..+ +-...+..| T Consensus 3 LG~G~fG~V~~~~~~~--t~~~~AiK~i~k~~~---~~~----------------------------~~~~~~~~E---- 45 (329) T cd05618 3 IGRGSYAKVLLVRLKK--TERIYAMKVVKKELV---NDD----------------------------EDIDWVQTE---- 45 (329) T ss_pred EEECCCEEEEEEEECC--CCCEEEEEEECHHHC---CCH----------------------------HHHHHHHHH---- T ss_conf 4038793999999989--998999999867887---798----------------------------999999999---- Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHC-CC---HHHHHHHHHHHHHHHHHH Q ss_conf 9998898720244677664300001022178--33530024786324267733200-22---568999999999998974 Q gi|254780623|r 207 LEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACG-HD---LERLSVTLVQSFLLHTLR 280 (517) Q Consensus 207 ~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~-~d---~~~la~~l~~~~~~qi~~ 280 (517) ..-+.+.. +.|. |.+.|.-+.++ -.+||||++|-.+... +...+ .+ .+.++..++.+ +.-+-. T Consensus 46 --~~il~~~~----~Hp~--Iv~l~~~f~~~~~lylVmEy~~GGdL~~~--l~~~~~l~e~~a~~~~~qi~~a-L~yLH~ 114 (329) T cd05618 46 --KHVFEQAS----NHPF--LVGLHSCFQTESRLFFVIEYVNGGDLMFH--MQRQRKLPEEHARFYSAEISLA-LNYLHE 114 (329) T ss_pred --HHHHHHHC----CCCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHHHHC T ss_conf --99999713----9997--79599999989999999958898898999--9874999999999999999999-999863 Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 4866178786228980289535743403121 Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) .|+.|-|.-|.||+++.+|.+-+.|||+... T Consensus 115 ~~IiHRDLKPeNILld~~g~iKL~DFGlak~ 145 (329) T cd05618 115 RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKE 145 (329) T ss_pred CCEEECCCCCCCCCCCCCCCEEECCCHHHHH T ss_conf 9689644572100315688566314005555 No 261 >cd06618 PKc_MKK7 Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and Probab=98.50 E-value=3.7e-07 Score=74.66 Aligned_cols=146 Identities=20% Similarity=0.226 Sum_probs=82.6 Q ss_pred HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 99867--6667788886555502128887236876403104688777788999875321146854334691799999998 Q gi|254780623|r 120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ 197 (517) Q Consensus 120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 197 (517) +..|+ +-|++||-|.||+|+-+. +|+.||||+.+..-.. ++. . T Consensus 14 l~dy~il~~IG~G~fG~Vy~a~~~~--t~~~vAvK~i~~~~~~--------------------------------~~~-~ 58 (296) T cd06618 14 LNDLENLGEIGSGTCGQVYKMRFKK--TGHVMAVKQMRRTGNK--------------------------------EEN-K 58 (296) T ss_pred HHHEEEEEEEECCCCEEEEEEEECC--CCCEEEEEEECCCCCC--------------------------------HHH-H T ss_conf 6743998898208892999999999--9979999998502490--------------------------------799-9 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHHHCCCHHHHH----HHHH Q ss_conf 878886559999889872024467766430000102217--8335300247863242677332002256899----9999 Q gi|254780623|r 198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRACGHDLERLS----VTLV 271 (517) Q Consensus 198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la----~~l~ 271 (517) .+. +|...+.+. . +.|. |-+.|.-+.+ .-.+||||+.|. +.++-.-..... +..++ ..++ T Consensus 59 ~~~------~e~~~l~~~---~-~hpn--Iv~l~~~~~~~~~~~ivmE~~~~~-l~~l~~~~~~~~-~e~~~~~~~~qi~ 124 (296) T cd06618 59 RIL------MDLDVVLKS---H-DCPY--IVKCYGYFITDSDVFICMELMSTC-LDKLLKRIQGPI-PEDILGKMTVAIV 124 (296) T ss_pred HHH------HHHHHHHHH---C-CCCC--EEEEEEEEEECCEEEEEEEECCCC-HHHHHHHHCCCC-CHHHHHHHHHHHH T ss_conf 999------999999985---7-9995--656999999899999999949987-799999726999-9999999999999 Q ss_pred HHHHHHH-HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 9999989-7448661787862289802895357434031216989 Q gi|254780623|r 272 QSFLLHT-LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 272 ~~~~~qi-~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) .+.- -+ -.+|+.|-|.-|+||+++.+|.+-+.|||+.+.+... T Consensus 125 ~al~-ylH~~~~IiHRDIKP~NILi~~~g~iKi~DFGla~~~~~~ 168 (296) T cd06618 125 KALH-YLKEKHGVIHRDVKPSNILLDASGNVKLCDFGISGRLVDS 168 (296) T ss_pred HHHH-HHHHHCCEEECCCCCCCEEECCCCCEEEEECCCEEEECCC T ss_conf 9999-9987379873324666357869998899545840460378 No 262 >cd05622 STKc_ROCK1 STKc_ROCK1: Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, and kidney. It mediates signaling from Rho to the actin cytoskeleton. It is implicated in the developme Probab=98.50 E-value=3.2e-07 Score=75.10 Aligned_cols=141 Identities=15% Similarity=0.232 Sum_probs=89.1 Q ss_pred HHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 867--666778888655550212888723687640310468877778899987532114685433469179999999887 Q gi|254780623|r 122 EFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT 199 (517) Q Consensus 122 ~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 199 (517) .|+ +-|+.||-|+|+.|+-+. +|+.+|+|+....- .++. .-...+ T Consensus 44 DFeilk~IG~G~FG~V~la~~k~--tg~~yAiKii~K~~--~~~~-----------------------------~~~~~~ 90 (371) T cd05622 44 DYEVVKVIGRGAFGEVQLVRHKS--TRKVYAMKLLSKFE--MIKR-----------------------------SDSAFF 90 (371) T ss_pred HEEEEEEEECCCCCEEEEEEECC--CCCEEEEEEEEHHH--HHHH-----------------------------HHHHHH T ss_conf 70672388307381999999999--99699999988899--5347-----------------------------899999 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 888655999988987202446776643000010221783--353002478632426773320022568999999999998 Q gi|254780623|r 200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH 277 (517) Q Consensus 200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q 277 (517) .+|.+-+... ++|. |.+.|..+.+++ .|||||++|-.+.+. +...+. . +..+..|+.| T Consensus 91 ------~~E~~il~~l-----~hp~--IVkl~~~fqd~~~lylVmEy~~GGdL~~~--l~~~~l-~----e~~a~~y~~q 150 (371) T cd05622 91 ------WEERDIMAFA-----NSPW--VVQLFYAFQDDRYLYMVMEYMPGGDLVNL--MSNYDV-P----EKWARFYTAE 150 (371) T ss_pred ------HHHHHHHHHC-----CCCC--CCCEEEEEEECCEEEEEEECCCCCCHHHH--HHCCCC-C----HHHHHHHHHH T ss_conf ------9999999867-----9999--99188999879989999958889708999--981898-9----9999999999 Q ss_pred -------HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf -------97448661787862289802895357434031216989 Q gi|254780623|r 278 -------TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 278 -------i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) +-..|+.|-|.-|.||+++.+|.+-+.|||+...++.. T Consensus 151 il~aL~yLH~~gIiHRDLKPeNILld~~g~iKL~DFGla~~~~~~ 195 (371) T cd05622 151 VVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKE 195 (371) T ss_pred HHHHHHHHHHCCEEECCCCCCCCCCCCCCCEEEEECCCCEECCCC T ss_conf 999999985286686876701152268998898268661116878 No 263 >KOG0574 consensus Probab=98.49 E-value=7.8e-07 Score=72.12 Aligned_cols=267 Identities=15% Similarity=0.132 Sum_probs=144.8 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 99998754047889999998676667788886555502128887236876403104688777788999875321146854 Q gi|254780623|r 103 TARLSVASALKAPIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPS 182 (517) Q Consensus 103 ~v~~~ie~elg~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~ 182 (517) +-.+.=+..|.++++++|.-.+ -++-+|-|.||+|.-+. +|+-||+|- -| ++. T Consensus 18 ~~~KLd~~sL~K~PEEVFDi~~-KLGEGSYGSV~KAIH~E--sG~v~AIK~-VP-----V~s------------------ 70 (502) T KOG0574 18 DGFKLDSSALNKPPEEVFDIVG-KLGEGSYGSVHKAIHRE--SGHVLAIKK-VP-----VDT------------------ 70 (502) T ss_pred CCCCCCHHHHCCCHHHHHHHHH-HHCCCCCHHHHHHHHHC--CCCEEEEEE-CC-----CCC------------------ T ss_conf 0123575440288499999998-73688615889998754--684788871-47-----630------------------ Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCC Q ss_conf 33469179999999887888655999988987202446776643000010221783353002478632426773320022 Q gi|254780623|r 183 MRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHD 262 (517) Q Consensus 183 ~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d 262 (517) |+.+++.|+ ++.+++|-..- .+.++..|++ |.-.+||||+-.-+++|+-++...... T Consensus 71 ----DLQEIIKEI--SIMQQC~S~yV---VKYYGSYFK~--------------sDLWIVMEYCGAGSiSDI~R~R~K~L~ 127 (502) T KOG0574 71 ----DLQEIIKEI--SIMQQCKSKYV---VKYYGSYFKH--------------SDLWIVMEYCGAGSISDIMRARRKPLS 127 (502) T ss_pred ----HHHHHHHHH--HHHHHCCCCHH---HHHHHHHCCC--------------CCEEEEHHHCCCCCHHHHHHHHCCCCC T ss_conf ----399999998--99986188432---4653322047--------------754765443178738999997127861 Q ss_pred HHHHHHHHHHHHHHHH---HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHH----------HHHHHH-- Q ss_conf 5689999999999989---7448661787862289802895357434031216989999999----------766999-- Q gi|254780623|r 263 LERLSVTLVQSFLLHT---LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLA----------EILYGF-- 327 (517) Q Consensus 263 ~~~la~~l~~~~~~qi---~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~----------~l~~a~-- 327 (517) -.+++..+-. -++-+ -.-.-.|-|-.+|||++..+|---+-|||..|.|+..+...=. +.+.-+ T Consensus 128 E~EIs~iL~~-TLKGL~YLH~~~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI~EIGY 206 (502) T KOG0574 128 EQEISAVLRD-TLKGLQYLHDLKKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIEEIGY 206 (502) T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHCC T ss_conf 8899999999-886789999999987431126278746441455412532013566775174026753236899999665 Q ss_pred -HCCCHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHH-HHHHHHHHHCCCCCCHHHHHHHHHH Q ss_conf -71872789999998412-66778936899999985210013343331135689-9999754527971288899999999 Q gi|254780623|r 328 -ISRDYQRVADVHFEAGY-VPRHHNRFSFAQAIRAIGEPIHGQSSDVISMGKLL-TMLFEITELFDMMTRPELVMLQKTM 404 (517) Q Consensus 328 -~~~D~~~~~~~l~~lg~-~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~P~~~~ll~r~l 404 (517) ...|...+.-..++|+. .+|..|...++. ++- +-..|.-.+.-.+.+ .++.+..+..=+.-|.+-.. ++ T Consensus 207 ~~~ADIWSLGITaIEMAEG~PPYsDIHPMRA----IFM-IPT~PPPTF~KPE~WS~~F~DFi~~CLiK~PE~R~T---A~ 278 (502) T KOG0574 207 DTKADIWSLGITAIEMAEGRPPYSDIHPMRA----IFM-IPTKPPPTFKKPEEWSSEFNDFIRSCLIKKPEERKT---AL 278 (502) T ss_pred CHHHHHHHHCCHHHHHHCCCCCCCCCCCCCE----EEE-CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHH---HH T ss_conf 2166677503201023158998554460021----575-568989877886665457899999986189888788---99 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 998849987688988899999999 Q gi|254780623|r 405 VVVEGVARMLNPEFNMWVSSEPIV 428 (517) Q Consensus 405 ~~lEG~~~~LdP~~d~~~~~~p~~ 428 (517) -.+|-.--+=.|..|++.....-+ T Consensus 279 ~L~~H~FiknA~g~~I~~~~I~~A 302 (502) T KOG0574 279 RLCEHTFIKNAPGCDIMQLMIQDA 302 (502) T ss_pred HHHHCHHHCCCCCCHHHHHHHHHH T ss_conf 985343432799641999999999 No 264 >cd05108 PTKc_EGFR Catalytic Domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor Probab=98.49 E-value=1.9e-06 Score=69.21 Aligned_cols=146 Identities=16% Similarity=0.146 Sum_probs=88.1 Q ss_pred HHH--HHHHHHHHHHHHHHHEECCCCCCE----EEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH Q ss_conf 867--666778888655550212888723----68764031046887777889998753211468543346917999999 Q gi|254780623|r 122 EFD--DPIAAASIAQVHPAVVHDINGYRK----VAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL 195 (517) Q Consensus 122 ~fd--ePlasASiaQVh~A~l~d~~~g~~----VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 195 (517) .|+ +.|++|+-|.||+|.... +|+. ||||..++.... . T Consensus 8 dy~~~~~LG~G~fG~Vykg~~~~--~g~~~~~~VAvK~l~~~~~~-----------------------------~----- 51 (316) T cd05108 8 EFKKIKVLGSGAFGTVYKGLWIP--EGEKVKIPVAIKELREATSP-----------------------------K----- 51 (316) T ss_pred HCEECEEEECCCCCEEEEEEEEC--CCCEEEEEEEEEEECCCCCH-----------------------------H----- T ss_conf 59554087118784999689947--99888689999996644587-----------------------------8----- Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCH-HCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHH---HHHHH Q ss_conf 98878886559999889872024467766430000102-217833530024786324267733200225689---99999 Q gi|254780623|r 196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWN-RTERDVITMEWIDGVKISDTEKLRACGHDLERL---SVTLV 271 (517) Q Consensus 196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~-~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~l---a~~l~ 271 (517) .+-+|.+|+..+.+++. |. |-+.|.- .+....++|||++|-.+.+.-.-.......+.+ +..++ T Consensus 52 -----~~~~~~~E~~il~~l~H-----pn--IV~l~g~~~~~~~~lv~e~~~~G~L~~~l~~~~~~l~~~~~~~~~~qia 119 (316) T cd05108 52 -----ANKEILDEAYVMASVDN-----PH--VCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIA 119 (316) T ss_pred -----HHHHHHHHHHHHHHCCC-----CC--EEEEEEEEEECCEEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHH T ss_conf -----99999999999986799-----88--8579999974885899997799888999976147879999999999999 Q ss_pred HHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHH Q ss_conf 999998974486617878622898028953574340312169899 Q gi|254780623|r 272 QSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRE 316 (517) Q Consensus 272 ~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~ 316 (517) .+ +.-+-..|+.|-|.-|.||+++.++.+-+.|||+...+.... T Consensus 120 ~g-L~yLH~~~IIHRDLKp~NILl~~~~~vKI~DFGlak~~~~~~ 163 (316) T cd05108 120 KG-MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEE 163 (316) T ss_pred HH-HHHHHHCCEECCCCCCCEEEECCCCCEEEEECCCCEECCCCC T ss_conf 99-999997793215666111668899968996547656678988 No 265 >cd07859 STKc_TDY_MAPK_plant The catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved Probab=98.49 E-value=5.5e-07 Score=73.31 Aligned_cols=139 Identities=17% Similarity=0.217 Sum_probs=78.3 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-|+.||-|.||+|+=. .+|+.||||+.+..... . . .... T Consensus 6 ~~IG~G~fG~V~~a~~~--~tg~~vAiK~i~~~~~~---------------------------~----~-------~~~~ 45 (338) T cd07859 6 EVIGKGSYGVVCSAIDT--HTGEKVAIKKINDVFEH---------------------------V----S-------DATR 45 (338) T ss_pred EEEECCCCEEEEEEEEC--CCCCEEEEEEECCHHCC---------------------------H----H-------HHHH T ss_conf 59742728499999988--99989999998812308---------------------------5----7-------8999 Q ss_pred HHHHHHHHHHHHCCCCCCCC-CCCHHCCCHHC----CCCEEEEECCCCCCCCHHHHHHHH-CCCH---HHHHHHHHHHHH Q ss_conf 59999889872024467766-43000010221----783353002478632426773320-0225---689999999999 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQG-FRVPKIDWNRT----ERDVITMEWIDGVKISDTEKLRAC-GHDL---ERLSVTLVQSFL 275 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~s----t~~VLvmE~i~G~~i~d~~~l~~~-~~d~---~~la~~l~~~~~ 275 (517) +.+|.+.+..++. |. |.+=.++..-+ ..-.+||||++| .+.+. ++.. .... +.++..++.+ + T Consensus 46 ~~~Ei~il~~l~H-----pnIv~~~~~~~~~~~~~~~~~yiv~e~~~~-~L~~~--i~~~~~l~~~~~~~~~~Qil~a-L 116 (338) T cd07859 46 ILREIKLLRLLRH-----PDIVEIKHIMLPPSRREFKDIYVVFELMES-DLHQV--IKANDDLTPEHHQFFLYQLLRA-L 116 (338) T ss_pred HHHHHHHHHHCCC-----CCCCCEEEEEECCCCCCCCEEEEEEEECCC-CHHHH--HHHCCCCCHHHHHHHHHHHHHH-H T ss_conf 9999999986799-----598848899951786656658999970598-47888--7626999999999999999999-9 Q ss_pred HHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC Q ss_conf 9897448661787862289802895357434031216 Q gi|254780623|r 276 LHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL 312 (517) Q Consensus 276 ~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l 312 (517) .-+-..|+.|-|.-|.||+++.+|++-+.|||+.... T Consensus 117 ~ylH~~~IiHRDLKPeNIL~~~~~~vKl~DFGlar~~ 153 (338) T cd07859 117 KYIHTANVFHRDLKPKNILANADCKLKICDFGLARVA 153 (338) T ss_pred HHHHHCCCEEECCCHHEEEECCCCCEEECCCCEEEEE T ss_conf 9997878843005431078868997652135513565 No 266 >cd07872 STKc_PCTAIRE2 The catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could Probab=98.48 E-value=6.8e-07 Score=72.58 Aligned_cols=135 Identities=17% Similarity=0.278 Sum_probs=80.0 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-|+.||-|.||+|+-+. +|+.||+|+.+-.-. .. .... T Consensus 12 ~~iG~G~fg~V~~a~~~~--t~~~vAiK~i~~~~~---------------------~~------------~~~~------ 50 (309) T cd07872 12 EKLGEGTYATVFKGRSKL--TENLVALKEIRLEHE---------------------EG------------APCT------ 50 (309) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHHC---------------------CC------------HHHH------ T ss_conf 586148592999999889--997999999853222---------------------21------------4899------ Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHHHC--CCH---HHHHHHHHHHHHHH Q ss_conf 5999988987202446776643000010221--7833530024786324267733200--225---68999999999998 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRACG--HDL---ERLSVTLVQSFLLH 277 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~~~--~d~---~~la~~l~~~~~~q 277 (517) ..+|++.+..++. +.| =+.|.-+. ..-.|||||++| .+.+. +...+ .+. +.++..++.+ +.- T Consensus 51 ~~~Ei~il~~l~H-----pnI--V~l~~~~~~~~~~~lv~Ey~~~-~L~~~--l~~~~~~~~~~~~~~~~~qil~a-l~y 119 (309) T cd07872 51 AIREVSLLKDLKH-----ANI--VTLHDIVHTDKSLTLVFEYLDK-DLKQY--MDDCGNIMSMHNVKIFLYQILRG-LAY 119 (309) T ss_pred HHHHHHHHHHCCC-----CCE--EEEEEEEEECCEEEEEEECCCC-CHHHH--HHHCCCCCCHHHHHHHHHHHHHH-HHH T ss_conf 9999999986789-----898--4177899659979999963477-78999--99728889999999999999999-999 Q ss_pred HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 9744866178786228980289535743403121 Q gi|254780623|r 278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) +-..|+.|-|.-|.||+++.+|.+-+.|||+... T Consensus 120 lH~~~IiHRDiKPeNILl~~~g~vKl~DFGla~~ 153 (309) T cd07872 120 CHRRKVLHRDLKPQNLLINERGELKLADFGLARA 153 (309) T ss_pred HHHCCEEECCCCCHHEEECCCCCEEEEEECCCHH T ss_conf 9978916455750316887889787504333110 No 267 >cd07863 STKc_CDK4 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiqu Probab=98.47 E-value=4.8e-07 Score=73.74 Aligned_cols=146 Identities=21% Similarity=0.241 Sum_probs=80.6 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|++||-|.||+|+-.+ +|+.||||+.+..... . ...... T Consensus 6 ~~iG~G~fg~V~~~~~~~--~~~~vAiK~i~~~~~~--------------------~------------~~~~~~----- 46 (288) T cd07863 6 AEIGVGAYGTVYKARDPH--SGHFVALKSVRVQTNE--------------------D------------GLPLST----- 46 (288) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCCC--------------------C------------HHHHHH----- T ss_conf 484123085999999889--9979999998320044--------------------3------------447999----- Q ss_pred HHHHHHHHHHHHCCCCCCCC-CCCHHCCCH----HCCCCEEEEECCCCCCCCHH-HHHHHHCCCHH---HHHHHHHHHHH Q ss_conf 59999889872024467766-430000102----21783353002478632426-77332002256---89999999999 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQG-FRVPKIDWN----RTERDVITMEWIDGVKISDT-EKLRACGHDLE---RLSVTLVQSFL 275 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~----~st~~VLvmE~i~G~~i~d~-~~l~~~~~d~~---~la~~l~~~~~ 275 (517) .+|...+++++. + +.|. |.+=.++.. ..+.-.+||||++| .+.+. ......+...+ .++..++.+. T Consensus 47 -~rEi~~l~~l~~-~-~Hpniv~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~i~~~~~qil~aL- 121 (288) T cd07863 47 -VREVALLKRLEA-F-DHPNIVRLMDVCATSRTDRETKVTLVFEHVDQ-DLRTYLDKVPPPGLPAETIKDLMRQFLRGL- 121 (288) T ss_pred -HHHHHHHHHHHH-C-CCCCEEEEEEEEEECCCCCCCEEEEEEECCCC-CHHHHHHHCCCCCCCHHHHHHHHHHHHHHH- T ss_conf -999999998755-6-89998989777620355776269999962798-689999845689999999999999999999- Q ss_pred HHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 989744866178786228980289535743403121698 Q gi|254780623|r 276 LHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 276 ~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) .-+-..|++|-|.-|.||+++.+|++.+.|||+....+. T Consensus 122 ~ylH~~~IiHRDiKp~NIll~~~~~vkl~DFG~a~~~~~ 160 (288) T cd07863 122 DFLHANCIVHRDLKPENILVTSGGQVKLADFGLARIYSC 160 (288) T ss_pred HHHHHCCEEECCCCHHHEEECCCCCEEEEECCCCCCCCC T ss_conf 999978906775661120466899689843360010567 No 268 >cd07838 STKc_CDK4_6_like The catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are Probab=98.47 E-value=9.8e-08 Score=79.10 Aligned_cols=144 Identities=19% Similarity=0.289 Sum_probs=82.0 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.||.|+-|.||+|+-+. +|+.||||+.+....+ | +......+|++ T Consensus 5 ~~lG~G~fg~V~~~~~~~--~~~~vAvK~i~~~~~~----~----------------------------~~~~~~~~Ei~ 50 (287) T cd07838 5 AEIGEGAYGTVYKARDLH--DGRFVALKKVRVPLSE----E----------------------------GIPLSTLREIA 50 (287) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEECHHCC----C----------------------------HHHHHHHHHHH T ss_conf 997237080999999889--9979999998201021----0----------------------------55899999999 Q ss_pred HHHHHHHHHHHHCCCCCCCCC-CCHHCCCHHC--C--CCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 599998898720244677664-3000010221--7--8335300247863242677332002256899999999999897 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGF-RVPKIDWNRT--E--RDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v-~vP~vy~~~s--t--~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~ 279 (517) .++.+.. + +.|.| .+=.++.... + .=.+||||++| .+.+. ++..+ ...+.+..+..|+.|++ T Consensus 51 ------~l~~l~~-~-~HpnIv~~~~~~~~~~~~~~~~~~lvmE~~~~-dL~~~--l~~~~--~~~~~e~~i~~~~~qil 117 (287) T cd07838 51 ------LLKQLES-F-EHPNIVRLLDVCHGPRTDRELKLTLVFEHVDQ-DLATY--LSKCP--KPGLPPETIKDLMRQLL 117 (287) T ss_pred ------HHHHHHH-C-CCCCEEEEEEEEECCCCCCCCEEEEEEECCCC-CHHHH--HHHCC--CCCCCHHHHHHHHHHHH T ss_conf ------9997626-5-99989889999830467777469999937998-89999--98666--78979999999999999 Q ss_pred -------HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf -------448661787862289802895357434031216989 Q gi|254780623|r 280 -------RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 280 -------~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) ..|+.|.|.-|.||+++.+|++-+.|||+...++.. T Consensus 118 ~al~yLH~~gIiHRDlKpeNIll~~~~~iKl~DFGla~~~~~~ 160 (287) T cd07838 118 RGLDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGLARIYSFE 160 (287) T ss_pred HHHHHHHHCCEEECCCCHHHEEECCCCCEEECCCCCCEECCCC T ss_conf 9999999799554627789979879998897146645444688 No 269 >PTZ00283 serine/threonine protein kinase; Provisional Probab=98.47 E-value=6.3e-07 Score=72.84 Aligned_cols=254 Identities=11% Similarity=0.108 Sum_probs=120.1 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +=|+.||-|.|+.|+-+. +|+.||||+..-. ..-..|... ...|.+ T Consensus 38 kVIGrGsFGkVyLar~k~--tG~lvAvK~I~l~--~ms~kd~~~------------------------------a~~EV~ 83 (496) T PTZ00283 38 RVLGSGATGTVLCAKRVS--DGEPFAVKVVDME--GMSEADKNR------------------------------AQAEVC 83 (496) T ss_pred EEEEECCCEEEEEEEECC--CCCEEEEEEEECC--CCCHHHHHH------------------------------HHHHHH T ss_conf 899828987999999979--9978999998403--378688999------------------------------999999 Q ss_pred HHHHHH--HHHHHHCCCCCCCCCCCHHCCCHHCCC-CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH--- Q ss_conf 599998--898720244677664300001022178-33530024786324267733200225689999999999989--- Q gi|254780623|r 205 LRLEAA--AFSEMAENTVKDQGFRVPKIDWNRTER-DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT--- 278 (517) Q Consensus 205 ~~~Ea~--n~~~~~~~~~~~~~v~vP~vy~~~st~-~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi--- 278 (517) .....+ |.-++.+.|..... ..+.+.. =.+||||++|-.+.+. ++..+...+.+.+.-+..|+.|+ T Consensus 84 iL~~l~HpnIVkl~e~Fv~~d~------~~~e~~~~LyIVMEY~~GGdL~~~--I~~r~k~~~~f~E~~a~~~~~Qi~~a 155 (496) T PTZ00283 84 CLLNCDFFSIVKCHEDFAKKDP------RNPENVLMIALVLDYANAGDLRQE--IKSRAKTNRTFREHEAGLLFIQVLLA 155 (496) T ss_pred HHHHCCCCCEEEEEHHHCCCCC------CCCCCCCEEEEEEECCCCCCHHHH--HHHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf 9972899875455553210575------555565479999925899857999--99865427887899999999999999 Q ss_pred ----HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHH Q ss_conf ----7448661787862289802895357434031216989999999766999718727899999984126677893689 Q gi|254780623|r 279 ----LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSF 354 (517) Q Consensus 279 ----~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~ 354 (517) -..|+.|=|.-|.||+++.+|.+-+.|||+...++......++.-+ +---+...-+.+..-++ ...+|.=.+ T Consensus 156 l~ylH~~~iiHRDlK~~Nill~~~g~vKl~DFG~sk~~~~~~~~~~a~T~---~GTP~Y~aPEi~~~~~Y-~~ksDiWSL 231 (496) T PTZ00283 156 VHHVHSKHMIHRDIKSANILLCSNGLVKLGDFGFSKMYAATVSDDVGRTF---CGTPYYVAPEIWRRKPY-SKKADMFSL 231 (496) T ss_pred HHHHHHCCCCCCCCCHHHEEECCCCCEEECCCCCCHHCCCCCCCCCCCCC---CCCHHHCCHHHHCCCCC-CCHHHHHHH T ss_conf 99999789241447776678868998898756520213544566644556---68821159999889998-948878878 Q ss_pred HHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC--CHHHHH-HHHHHHH Q ss_conf 9999985210013343331135689999975452797128889999999999884998768898--889999-9999999 Q gi|254780623|r 355 AQAIRAIGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVARMLNPEF--NMWVSS-EPIVEEW 431 (517) Q Consensus 355 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~~~ll~r~l~~lEG~~~~LdP~~--d~~~~~-~p~~~~~ 431 (517) ---+.+++.- ..|+.--++.++...+.. -..-.+|+.+.-=+|.++ ....+.||+- +.-+.. .||.+.. T Consensus 232 GviLYEm~t~--~~PF~g~~~~~L~~kI~~---G~~~piP~~yS~el~~lv---~~mL~~dP~~RPs~~~lL~~P~~k~~ 303 (496) T PTZ00283 232 GVLLYELLTL--KRPFDGENMEEVMHKTLA---GRYDPLPPSISPEMQEIV---TALLSSDPKRRPSSSKLLNMPICKLF 303 (496) T ss_pred HHHHHHHHHC--CCCCCCCCHHHHHHHHHC---CCCCCCCCCCCHHHHHHH---HHHHCCCCCCCCCHHHHHHCHHHHHH T ss_conf 9999999758--899899999999999966---888999721099999999---99823492207199999745589999 Q ss_pred H Q ss_conf 9 Q gi|254780623|r 432 I 432 (517) Q Consensus 432 l 432 (517) + T Consensus 304 ~ 304 (496) T PTZ00283 304 I 304 (496) T ss_pred H T ss_conf 9 No 270 >cd05045 PTKc_RET Catalytic Domain of the Protein Tyrosine Kinase, REarranged during Transfection protein. Protein Tyrosine Kinase (PTK) family; RET (rearranged during transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi Probab=98.47 E-value=2.6e-06 Score=68.11 Aligned_cols=142 Identities=13% Similarity=0.164 Sum_probs=83.1 Q ss_pred HHHHHHHHHHHHHEEC---CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 6778888655550212---8887236876403104688777788999875321146854334691799999998878886 Q gi|254780623|r 127 IAAASIAQVHPAVVHD---INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM 203 (517) Q Consensus 127 lasASiaQVh~A~l~d---~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El 203 (517) |++||-|.||+|+... ..+++.||||+.+.+..+ .+ .- T Consensus 3 iG~G~fG~Vyk~~~~~~~~~~~~~~vAvK~l~~~~~~--------------------------------~~-------~~ 43 (285) T cd05045 3 LGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASS--------------------------------SE-------LR 43 (285) T ss_pred CCCCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCCH--------------------------------HH-------HH T ss_conf 3448896899999805677658989999997767997--------------------------------99-------99 Q ss_pred HHHHHHHHHHHHHCCCCCCCCC-CCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHH-----------------------H Q ss_conf 5599998898720244677664-300001022178335300247863242677332-----------------------0 Q gi|254780623|r 204 DLRLEAAAFSEMAENTVKDQGF-RVPKIDWNRTERDVITMEWIDGVKISDTEKLRA-----------------------C 259 (517) Q Consensus 204 D~~~Ea~n~~~~~~~~~~~~~v-~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~-----------------------~ 259 (517) +|.+|++.+.+++. |.| .+=.++.+ ...-.|||||++|-.+.+.-.... . T Consensus 44 ~~~~E~~~l~~l~H-----pNIV~~~g~~~~-~~~~~lv~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (285) T cd05045 44 DLLSEFNLLKQVNH-----PHVIKLYGACSQ-DGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDER 117 (285) T ss_pred HHHHHHHHHHHCCC-----CCEEEEEEEEEE-CCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 99999999986799-----887307999978-997799997478992999999733346432233222232112464334 Q ss_pred CCCHH---HHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 02256---89999999999989744866178786228980289535743403121698 Q gi|254780623|r 260 GHDLE---RLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 260 ~~d~~---~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) ....+ .++..+++. +.=+-..|+.|.|.-|.||+++.++.+-+-|||....+.. T Consensus 118 ~l~~~~~~~~a~qia~g-l~yLH~~~iiHRDlK~~NILl~~~~~~Ki~DFGls~~~~~ 174 (285) T cd05045 118 ALTMGDLISFAWQISRG-MQYLAEMKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYE 174 (285) T ss_pred CCCHHHHHHHHHHHHHH-HHHHHHCCCEECCCCCCEEEECCCCCEEEECCCCCCCCCC T ss_conf 77899999999999999-9998748906056774728886899688711511101356 No 271 >cd05109 PTKc_HER2 Catalytic Domain of the Protein Tyrosine Kinase, HER2. Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve Probab=98.47 E-value=1.3e-06 Score=70.30 Aligned_cols=141 Identities=15% Similarity=0.120 Sum_probs=85.4 Q ss_pred HHHHHHHHHHHHHHHEECCCCCC----EEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 66677888865555021288872----36876403104688777788999875321146854334691799999998878 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYR----KVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTK 200 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~----~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~ 200 (517) +.|++||-|.||+|+..+ .|+ +||||+.+.+...... T Consensus 13 k~iG~G~fG~Vy~g~~~~--~~~~~~~~vavK~l~~~~~~~~~------------------------------------- 53 (279) T cd05109 13 KVLGSGAFGTVYKGIWIP--DGENVKIPVAIKVLRENTSPKAN------------------------------------- 53 (279) T ss_pred EEEECCCCCEEEEEEECC--CCCEEEEEEEEEEECCCCCHHHH------------------------------------- T ss_conf 598017891999789918--99888689999998845798999------------------------------------- Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCC-CCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHH---HHHHHHHHHHHH Q ss_conf 886559999889872024467766-4300001022178335300247863242677332002256---899999999999 Q gi|254780623|r 201 MEMDLRLEAAAFSEMAENTVKDQG-FRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLE---RLSVTLVQSFLL 276 (517) Q Consensus 201 ~ElD~~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~l~~~~~~ 276 (517) -+|.+|+..+.+++. |. +.+=.+. .+..-.+||||+++-.+.+.-.-.....+.. .++..++.+. . T Consensus 54 --~~~~~E~~il~~l~h-----pnIv~~~g~~--~~~~~~lv~e~~~~G~L~~~l~~~~~~~~~~~~~~i~~qia~gl-~ 123 (279) T cd05109 54 --KEILDEAYVMAGVGS-----PYVCRLLGIC--LTSTVQLVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGM-S 123 (279) T ss_pred --HHHHHHHHHHHHCCC-----CCCCEEEEEE--EECCEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHH-H T ss_conf --999999999986799-----9898099999--96890799997889978999985689999999999999999999-9 Q ss_pred HHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 89744866178786228980289535743403121698 Q gi|254780623|r 277 HTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 277 qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) -+-..|..|.|.-|.||+++.++++.+-|||+...++. T Consensus 124 yLH~~~IiHrDlKp~NILi~~~~~~Ki~DFGls~~~~~ 161 (279) T cd05109 124 YLEEVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDI 161 (279) T ss_pred HHHHCCEECCCCCCCCEEECCCCCEEEEECCCCCCCCC T ss_conf 99859901376573108988999399974477610678 No 272 >cd05036 PTKc_ALK_LTK Catalytic Domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase. Protein Tyrosine Kinase (PTK) family; Anaplastic lymphoma kinase (ALK) and Leukocyte tyrosine (tyr) kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well Probab=98.46 E-value=7.3e-07 Score=72.34 Aligned_cols=147 Identities=15% Similarity=0.189 Sum_probs=87.0 Q ss_pred HHHH--HHHHHHHHHHHHHHHEECCC---CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH Q ss_conf 9867--66677888865555021288---872368764031046887777889998753211468543346917999999 Q gi|254780623|r 121 CEFD--DPIAAASIAQVHPAVVHDIN---GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL 195 (517) Q Consensus 121 ~~fd--ePlasASiaQVh~A~l~d~~---~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 195 (517) ++++ +.|++||-|.||+|.++..+ ....||||+.+.... T Consensus 6 ~~~~i~~~iG~G~FG~Vy~g~~~~~~~~~~~~~VavK~~~~~~~------------------------------------ 49 (277) T cd05036 6 DSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCS------------------------------------ 49 (277) T ss_pred HHEEEEEEEEECCCCEEEEEEEECCCCCCEEEEEEEEEECCCCC------------------------------------ T ss_conf 99498009830788599999996888884038999999676679------------------------------------ Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHH------CCCHH---H Q ss_conf 9887888655999988987202446776643-000010221783353002478632426773320------02256---8 Q gi|254780623|r 196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFR-VPKIDWNRTERDVITMEWIDGVKISDTEKLRAC------GHDLE---R 265 (517) Q Consensus 196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~-vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~------~~d~~---~ 265 (517) -..+.+|.+|+.-+.+++. |.|. +=.+.. -.+...|||||++|-.+.+.-.-... ....+ . T Consensus 50 ---~~~~~~f~~E~~il~~l~H-----pnIv~~~g~~~-~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~l~~~~~~~ 120 (277) T cd05036 50 ---EQDESDFLMEALIMSKFNH-----QNIVRLIGVSF-ERLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLF 120 (277) T ss_pred ---HHHHHHHHHHHHHHHHCCC-----CCEEEEEEEEE-ECCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCHHHHHH T ss_conf ---8899999999999984899-----89733999998-89978999995689958999985188867665568999999 Q ss_pred HHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCC---EEEEECCHHEECC Q ss_conf 99999999999897448661787862289802895---3574340312169 Q gi|254780623|r 266 LSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGY---IVAVDMGITGRLS 313 (517) Q Consensus 266 la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~---i~~lDfG~vg~l~ 313 (517) ++..++.. +.-+-..|+.|.|.-|.||+++.+|. +-+-|||+...+. T Consensus 121 i~~~ia~g-l~yLH~~~ivHrDlKp~NiLl~~~g~~~~~Ki~DFGls~~~~ 170 (277) T cd05036 121 CARDVAKG-CKYLEENHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIY 170 (277) T ss_pred HHHHHHHH-HHHHHHCCCCCCCCCHHHEEEECCCCCCEEEEEECCCCCCCC T ss_conf 99999999-999987991568775562899068998558999767741156 No 273 >cd05043 PTK_Ryk Pseudokinase Domain of the Receptor related to tyrosine kinase. Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It ac Probab=98.46 E-value=4.9e-06 Score=65.98 Aligned_cols=147 Identities=11% Similarity=0.138 Sum_probs=87.8 Q ss_pred HHHHHHHHHHHHHHHHHEECCCC--CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 67666778888655550212888--7236876403104688777788999875321146854334691799999998878 Q gi|254780623|r 123 FDDPIAAASIAQVHPAVVHDING--YRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTK 200 (517) Q Consensus 123 fdePlasASiaQVh~A~l~d~~~--g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~ 200 (517) +.+-||+||-|+||+|++.+.+. .+.||||....+..+. T Consensus 10 l~~~iG~G~FG~Vy~g~~~~~~~~~~~~vavK~~~~~~~~~--------------------------------------- 50 (280) T cd05043 10 LSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEI--------------------------------------- 50 (280) T ss_pred EEEEEEECCCCEEEEEEEECCCCCCEEEEEEEEECCCCCHH--------------------------------------- T ss_conf 89999607897999999948986402799999946768989--------------------------------------- Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCC-CHHCCCHHCCCCEEEEECCCCCCCCHHHHHH-------HHCCCHHH---HHHH Q ss_conf 88655999988987202446776643-0000102217833530024786324267733-------20022568---9999 Q gi|254780623|r 201 MEMDLRLEAAAFSEMAENTVKDQGFR-VPKIDWNRTERDVITMEWIDGVKISDTEKLR-------ACGHDLER---LSVT 269 (517) Q Consensus 201 ~ElD~~~Ea~n~~~~~~~~~~~~~v~-vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~-------~~~~d~~~---la~~ 269 (517) +.-.|.+|+..+..++. |.|. +=.+..+-+..-.++|||++|-.+.+.-.-. ....+.+. ++.. T Consensus 51 ~~~~~~~E~~~l~~l~H-----pNIv~~~g~~~~~~~~~~iv~ey~~~G~L~~~l~~~~~~~~~~~~~l~~~~~~~~~~q 125 (280) T cd05043 51 QVTLLLQESCLLYGLSH-----QNILPILHVCIEDGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQ 125 (280) T ss_pred HHHHHHHHHHHHHHCCC-----CCCCCEEEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 99999999999985899-----8988388999988970499999279991999987334565456777899999999999 Q ss_pred HHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 999999989744866178786228980289535743403121698 Q gi|254780623|r 270 LVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 270 l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) ++.+ +.-+-..|+.|.|.-|.||+++.++++-+-|||+...+.+ T Consensus 126 ia~g-l~yLH~~~ivHRDLK~~NiLl~~~~~vKi~DFGla~~~~~ 169 (280) T cd05043 126 IACG-MSYLHKRGVIHKDIAARNCVIDEELQVKITDNALSRDLFP 169 (280) T ss_pred HHHH-HHHHHHCCEECCCCCCCCEEECCCCCEEEEECCCCEECCC T ss_conf 9999-9999759935451250316998999789930546644467 No 274 >KOG0611 consensus Probab=98.45 E-value=2.9e-06 Score=67.73 Aligned_cols=227 Identities=19% Similarity=0.206 Sum_probs=141.8 Q ss_pred HHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 86766677888865555021288872368764031046887777889998753211468543346917999999988788 Q gi|254780623|r 122 EFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKM 201 (517) Q Consensus 122 ~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 201 (517) +|.|-++++.-|-|-+|+-+- +|+.||||-.|-+-.+. +.||--+ T Consensus 56 E~~etLGkGTYGKVk~A~e~~--sgR~VAiKsIrKdkIkd-eqDlvhI-------------------------------- 100 (668) T KOG0611 56 EITETLGKGTYGKVKLAYEHK--SGREVAIKSIRKDKIKD-EQDLVHI-------------------------------- 100 (668) T ss_pred HHHHHHCCCCCCCEEEHHHCC--CCCEEEHHHHHHHHCCC-HHHHHHH-------------------------------- T ss_conf 899875477632143300214--78575333545542113-7788999-------------------------------- Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH-- Q ss_conf 865599998898720244677664300001022178335300247863242677332002256899999999999897-- Q gi|254780623|r 202 EMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL-- 279 (517) Q Consensus 202 ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~-- 279 (517) ++|.+-|.- +..-.-|.|=.||. -+.+-||||||-.|--+.|.-. .+..|.++-.+-||+||. T Consensus 101 ----RREIeIMSs----LNHPhII~IyEVFE-NkdKIvivMEYaS~GeLYDYiS------er~~LsErEaRhfFRQIvSA 165 (668) T KOG0611 101 ----RREIEIMSS----LNHPHIIQIYEVFE-NKDKIVIVMEYASGGELYDYIS------ERGSLSEREARHFFRQIVSA 165 (668) T ss_pred ----HHHHHHHHH----CCCCCEEEHHHHHC-CCCEEEEEEEECCCCCHHHHHH------HHCCCCHHHHHHHHHHHHHH T ss_conf ----999999862----48976553123342-7761899998447860889887------74553378899999999999 Q ss_pred -----HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHH Q ss_conf -----448661787862289802895357434031216989999999766999718727899999984126677893689 Q gi|254780623|r 280 -----RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSF 354 (517) Q Consensus 280 -----~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~ 354 (517) .+++.|-|..--||+++.++.+-+-|||.---. .. -++++-+.---...--+.+..--+..+.+|-=.+ T Consensus 166 VhYCHknrVvHRDLKLENILLD~N~NiKIADFGLSNly----~~--~kfLqTFCGSPLYASPEIvNG~PY~GPEVDsWsL 239 (668) T KOG0611 166 VHYCHKNRVVHRDLKLENILLDQNNNIKIADFGLSNLY----AD--KKFLQTFCGSPLYASPEIVNGTPYKGPEVDSWSL 239 (668) T ss_pred HHHHHHCCCEECCCCHHHEEECCCCCEEEECCCHHHHH----CC--CCHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH T ss_conf 99986245000100054413237897455304305554----12--2078875388554784000787777876332567 Q ss_pred HHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH Q ss_conf 99999852100133433311356899999754527971288899999999998 Q gi|254780623|r 355 AQAIRAIGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVV 407 (517) Q Consensus 355 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~~~ll~r~l~~l 407 (517) ---+..++ |...|++..+...++.++-.-+++-+- .|++-..++|-++.+ T Consensus 240 GvLLYtLV--yGtMPFDG~Dhk~lvrQIs~GaYrEP~-~PSdA~gLIRwmLmV 289 (668) T KOG0611 240 GVLLYTLV--YGTMPFDGRDHKRLVRQISRGAYREPE-TPSDASGLIRWMLMV 289 (668) T ss_pred HHHHHHHH--HCCCCCCCCHHHHHHHHHHCCCCCCCC-CCCHHHHHHHHHHHC T ss_conf 77999886--246666872089999986345545899-972178999998860 No 275 >cd06616 PKc_MKK4 Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specif Probab=98.45 E-value=9e-07 Score=71.65 Aligned_cols=145 Identities=20% Similarity=0.238 Sum_probs=80.3 Q ss_pred HHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 867--666778888655550212888723687640310468877778899987532114685433469179999999887 Q gi|254780623|r 122 EFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT 199 (517) Q Consensus 122 ~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 199 (517) .|+ +-|+.||-|.||+|.-+. +|+.||||+.+-..... + ...+ T Consensus 5 d~~~l~~lG~G~fg~V~~~~~~~--~~~~~AiK~i~~~~~~~---~------------------------------~~~~ 49 (288) T cd06616 5 DLKDLGEIGRGAFGTVNKMLHKP--SGTIMAVKRIRSTVDEK---E------------------------------QKRL 49 (288) T ss_pred HCEECCEEECCCCEEEEEEEECC--CCCEEEEEEECCCCCHH---H------------------------------HHHH T ss_conf 98883286138785999999889--99699999988014918---9------------------------------9999 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHH---HHHCCCHHH----HHHHH Q ss_conf 88865599998898720244677664300001022--1783353002478632426773---320022568----99999 Q gi|254780623|r 200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKL---RACGHDLER----LSVTL 270 (517) Q Consensus 200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l---~~~~~d~~~----la~~l 270 (517) ..|...+.+.. +.|.| =+.|.-+ .+.-.++|||++|. +.+.... ...+.-... ++..+ T Consensus 50 ------~~e~~~l~~~~----~hpnI--v~~~~~~~~~~~~~ivme~~~~~-l~~~~~~~~~~~~~~~~e~~~~~~~~qi 116 (288) T cd06616 50 ------LMDLDVVMRSS----DCPYI--VKFYGALFREGDCWICMELMDIS-LDKFYKYVYEVLKSVIPEEILGKIAVAT 116 (288) T ss_pred ------HHHHHHHHHHC----CCCCE--EEEEEEEEECCEEEEEEEECCCC-HHHHHHHHHHHCCCCCCHHHHHHHHHHH T ss_conf ------99999999836----99988--88988998789179999982898-8999999987316899999999999999 Q ss_pred HHHHHHHHHHC-CEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 99999989744-8661787862289802895357434031216989 Q gi|254780623|r 271 VQSFLLHTLRD-GFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 271 ~~~~~~qi~~~-GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) +.+.- -+-.. |+.|-|.-|.||+++.+|.+-+.|||+.+.+.+. T Consensus 117 ~~al~-ylH~~~~IiHRDlKp~NILl~~~~~iKl~DFGla~~l~~~ 161 (288) T cd06616 117 VKALN-YLKEELKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDS 161 (288) T ss_pred HHHHH-HHHHCCCEECCCCCHHHEEECCCCCEEEEECCCCCCCCCC T ss_conf 99999-9987289841667601132889997899968885435777 No 276 >cd07854 STKc_MAPK4_6 The catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6 subfamily. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell c Probab=98.43 E-value=4.2e-07 Score=74.19 Aligned_cols=145 Identities=21% Similarity=0.274 Sum_probs=75.8 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCH---HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 666778888655550212888723687640310---46887777889998753211468543346917999999988788 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPG---VRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKM 201 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~---i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 201 (517) ++||+||-|.||+|+-+. +|+.||||...-. -.+.+...+++++.+. T Consensus 11 ~~LG~G~fG~V~~a~~~~--t~~~vAiK~i~~~~~~~~~~~~rEi~il~~l~---------------------------- 60 (342) T cd07854 11 RPLGCGSNGLVFSAVDSD--CDKRVAVKKIVLTDPQSVKHALREIKIIRRLD---------------------------- 60 (342) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEECCCHHHHHHHHHHHHHHHHCC---------------------------- T ss_conf 894217480999999889--99899999997389888999999999998679---------------------------- Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH- Q ss_conf 86559999889872024467766430000102217--833530024786324267733200225689999999999989- Q gi|254780623|r 202 EMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT- 278 (517) Q Consensus 202 ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi- 278 (517) -.|.-++.+.+.+.. -..+..+..++. .-.+||||++|. +.+. ++.. .+.+..+..++.|+ T Consensus 61 -------H~nIv~~~~~~~~~~-~~~~~~~~~~~~~~~~~iv~e~~~~~-L~~~--~~~~-----~l~e~~i~~~~~Qil 124 (342) T cd07854 61 -------HDNIVKVYEVLGPSG-SDLTEDVGSLTELNSVYIVQEYMETD-LANV--LEQG-----PLSEEHARLFMYQLL 124 (342) T ss_pred -------CCCCCEEEEEEECCC-CCCCCCCCCCCCCCEEEEEEECCCCC-HHHH--HHCC-----CCCHHHHHHHHHHHH T ss_conf -------989890999980278-65311113222354489998077868-9999--9729-----989999999999999 Q ss_pred ------HHCCEECCCCCCCEEEEECCC-CEEEEECCHHEECCHH Q ss_conf ------744866178786228980289-5357434031216989 Q gi|254780623|r 279 ------LRDGFFHADLHPGNLFVDSKG-YIVAVDMGITGRLSKR 315 (517) Q Consensus 279 ------~~~GfFHaDPHpGNi~v~~dg-~i~~lDfG~vg~l~~~ 315 (517) -..|+.|-|.-|.||+++.++ .+-+.|||+...++++ T Consensus 125 ~aL~ylH~~~IiHRDiKPeNILl~~~~~~vKl~DFGla~~~~~~ 168 (342) T cd07854 125 RGLKYIHSANVLHRDLKPANVFINTEDLVLKIGDFGLARIVDPH 168 (342) T ss_pred HHHHHHHHCCCEECCCCHHHEEEECCCCEEEECCCCEEEECCCC T ss_conf 99999988866526475788588379984875245013665788 No 277 >KOG0661 consensus Probab=98.43 E-value=5.6e-07 Score=73.22 Aligned_cols=180 Identities=16% Similarity=0.285 Sum_probs=117.4 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-++.|+-|.|+.|+-++ +|+.||||= +- .++.+ .+|+- T Consensus 16 ~klGDGTfGsV~la~~~~--~~~~VAIK~------------------MK---~Kf~s------------------~ee~~ 54 (538) T KOG0661 16 RKLGDGTFGSVYLAKSKE--TGELVAIKK------------------MK---KKFYS------------------WEECM 54 (538) T ss_pred HHHCCCCCEEEEEEEECC--CCCEEEHHH------------------HH---HHHCC------------------HHHHH T ss_conf 873587523578753157--786433998------------------87---64236------------------99987 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH----- Q ss_conf 599998898720244677664300001022178335300247863242677332002256899999999999897----- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL----- 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~----- 279 (517) =.+|...+.++.. ...-|.+=+|+.|--..=-+||||++- .+-++ ++.. ++-+.+.-++.++.||| T Consensus 55 nLREvksL~kln~---hpniikL~Evi~d~~~~L~fVfE~Md~-NLYqL--mK~R---~r~fse~~irnim~QilqGL~h 125 (538) T KOG0661 55 NLREVKSLRKLNP---HPNIIKLKEVIRDNDRILYFVFEFMDC-NLYQL--MKDR---NRLFSESDIRNIMYQILQGLAH 125 (538) T ss_pred HHHHHHHHHHCCC---CCCCHHHHHHHHCCCCEEEEEHHHHHH-HHHHH--HHHC---CCCCCHHHHHHHHHHHHHHHHH T ss_conf 7999999974588---974030577763567537664876651-39999--8615---7768789999999999988889 Q ss_pred --HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHH Q ss_conf --448661787862289802895357434031216989999999766999718727899999984126677893689999 Q gi|254780623|r 280 --RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQA 357 (517) Q Consensus 280 --~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~ 357 (517) .+||||-|.-|-||+|+...-|=+-|||...++...- =+..-+.--..++-+.+++.|..+..+|.-++-.- T Consensus 126 iHk~GfFHRDlKPENiLi~~~~~iKiaDFGLARev~Skp------PYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI 199 (538) T KOG0661 126 IHKHGFFHRDLKPENILISGNDVIKIADFGLAREVRSKP------PYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCI 199 (538) T ss_pred HHHCCCCCCCCCHHHEEECCCCEEEECCCCCCCCCCCCC------CCCHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHH T ss_conf 986285325687544675364436750344322234689------84023202101361776423665772278988889 Q ss_pred HHH Q ss_conf 998 Q gi|254780623|r 358 IRA 360 (517) Q Consensus 358 i~~ 360 (517) +.+ T Consensus 200 ~aE 202 (538) T KOG0661 200 MAE 202 (538) T ss_pred HHH T ss_conf 999 No 278 >cd05576 STKc_RPK118_like STKc_RPK118_like: Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 Probab=98.43 E-value=2.4e-07 Score=76.07 Aligned_cols=125 Identities=14% Similarity=0.151 Sum_probs=74.8 Q ss_pred HHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88886555502128887236876403104688777788999875321146854334691799999998878886559999 Q gi|254780623|r 130 ASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEA 209 (517) Q Consensus 130 ASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea 209 (517) ||.|+||.|+=+. +|+.+|+|+.+-.- .. .+|. T Consensus 4 G~fg~V~l~~~~~--t~~~~AiK~i~k~~--~~-------------------------------------------~~e~ 36 (237) T cd05576 4 GVIDKVLLVMDTR--TQQTFILKGLRKSS--EY-------------------------------------------SRER 36 (237) T ss_pred CCCCEEEEEEECC--CCCEEEEEEECHHH--HH-------------------------------------------HHHH T ss_conf 8675899999879--99999999981415--57-------------------------------------------7999 Q ss_pred HHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH-------HHH Q ss_conf 8898720244677664300001022178--3353002478632426773320022568999999999998-------974 Q gi|254780623|r 210 AAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH-------TLR 280 (517) Q Consensus 210 ~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q-------i~~ 280 (517) ..+... ..|. |.+.|.-+-++ -.|||||++|-.+.+.- ...+ .+.+..+..|+.| +-. T Consensus 37 ~~l~~~-----~~p~--Iv~l~~~~~~~~~~ylvmEy~~gg~L~~~i--~~~~----~l~e~~~~~~~~qll~al~~lH~ 103 (237) T cd05576 37 LTIIPH-----CVPN--MVCLHKYIVSEDSVFLVLQHAEGGKLWSHI--SKFL----NIPEECVKRWAAEMVVALDALHR 103 (237) T ss_pred HHHHHC-----CCCC--CCEEEEEEEECCEEEEEEECCCCCCHHHHH--HHCC----CCCHHHHHHHHHHHHHHHHHHHH T ss_conf 999970-----8998--676999999899999999577999489999--8759----99999999999999999999997 Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 4866178786228980289535743403121698 Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) .|+.|.|..|+||+++.+|.+.+.|||....+.+ T Consensus 104 ~~ivHrDiKPeNill~~~~~ikl~dfg~~~~~~~ 137 (237) T cd05576 104 EGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVED 137 (237) T ss_pred CCEEEEECCCCEEEECCCCCEEEEECCCCHHCCC T ss_conf 8967511564317887999799976465143155 No 279 >cd05099 PTKc_FGFR4 Catalytic Domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to Probab=98.43 E-value=5.9e-07 Score=73.08 Aligned_cols=153 Identities=14% Similarity=0.133 Sum_probs=89.4 Q ss_pred CCHHHHHHHHH--HHHHHHHHHHHHHHHEEC-----CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 88999999867--666778888655550212-----88872368764031046887777889998753211468543346 Q gi|254780623|r 114 APIEELYCEFD--DPIAAASIAQVHPAVVHD-----INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRL 186 (517) Q Consensus 114 ~~~~~~F~~fd--ePlasASiaQVh~A~l~d-----~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~ 186 (517) ..|+--++.+. ++|++||-|+||+|.++- ++.+..||||+.+.+..+. T Consensus 5 ~~Weip~~~l~l~~~IG~G~FG~Vyka~~~g~~~~~~~~~~~VAvK~l~~~~~~~------------------------- 59 (314) T cd05099 5 PKWEFPRDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDK------------------------- 59 (314) T ss_pred CCCCCCHHHEEECCEEECCCCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCHH------------------------- T ss_conf 7674008996984598316673999988816666667643699999978667868------------------------- Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC---CCEEEEECCCCCCCCHHHHHHH----- Q ss_conf 91799999998878886559999889872024467766430000102217---8335300247863242677332----- Q gi|254780623|r 187 CFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE---RDVITMEWIDGVKISDTEKLRA----- 258 (517) Q Consensus 187 ~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st---~~VLvmE~i~G~~i~d~~~l~~----- 258 (517) ..-+|.+|++.+.++.+ .+. |-+.|. .|+ .-.+||||++|-.+.+.-.... T Consensus 60 --------------~~~~~~~E~~~l~~l~~----Hpn--IV~l~g-~~~~~~~~~iV~Ey~~~GsL~~~L~~~~~~~~~ 118 (314) T cd05099 60 --------------DLADLISEMELMKLIGK----HKN--IINLLG-VCTQEGPLYVIVEYAAKGNLREFLRARRPPGPD 118 (314) T ss_pred --------------HHHHHHHHHHHHHHHCC----CCC--EEEEEE-EEEECCEEEEEEEECCCCCHHHHHHHCCCCCCC T ss_conf --------------99999999999986357----997--778867-896499789999917999599999863787642 Q ss_pred ----------HCCCHH---HHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf ----------002256---8999999999998974486617878622898028953574340312169 Q gi|254780623|r 259 ----------CGHDLE---RLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 259 ----------~~~d~~---~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) .....+ .+|..++.. +.-+-..|+.|.|.-|.||+++.++.+-+-|||+...+. T Consensus 119 ~~~~~~~~~~~~l~~~~~~~ia~qia~g-l~yLH~~~iiHRDLK~~NILl~~~~~~Ki~DFGlar~~~ 185 (314) T cd05099 119 YTFDITKVPEEQLSFKDLVSCAYQVARG-MEYLESRRCIHRDLAARNVLVTEDNVMKIADFGLARGVH 185 (314) T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCHHHEEECCCCCEEEEECCCCCCCC T ss_conf 2222122543356999999999999999-999984899688767221628799958980242445067 No 280 >cd05100 PTKc_FGFR3 Catalytic Domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to Probab=98.40 E-value=1.4e-06 Score=70.16 Aligned_cols=152 Identities=15% Similarity=0.177 Sum_probs=88.3 Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHEEC-----CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH Q ss_conf 999999867--666778888655550212-----8887236876403104688777788999875321146854334691 Q gi|254780623|r 116 IEELYCEFD--DPIAAASIAQVHPAVVHD-----INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCF 188 (517) Q Consensus 116 ~~~~F~~fd--ePlasASiaQVh~A~l~d-----~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~ 188 (517) ||--.+.++ ++|+.||.|+||+|+... .+.+..||||+.+++..+ .|+. T Consensus 7 wEi~r~~l~l~~~LG~G~FG~Vy~a~~~g~~~~~~~~~~~VAVK~l~~~~~~---~~~~--------------------- 62 (334) T cd05100 7 WELSRTRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATD---KDLS--------------------- 62 (334) T ss_pred CEECHHHEEECCEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCCCCH---HHHH--------------------- T ss_conf 3451899697379931754389999980667666874179999997843697---9999--------------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC---CCEEEEECCCCCCCCHHHHHHH------- Q ss_conf 799999998878886559999889872024467766430000102217---8335300247863242677332------- Q gi|254780623|r 189 SAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE---RDVITMEWIDGVKISDTEKLRA------- 258 (517) Q Consensus 189 ~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st---~~VLvmE~i~G~~i~d~~~l~~------- 258 (517) +|.+|++.+..+.+ .+.|. +.|. .|+ .-.+||||++|-.+.+.-.... T Consensus 63 ---------------~~~~E~~~l~~l~~----HpNIV--~l~g-~~~~~~~l~iv~Ey~~~GsL~~~L~~~~~~~~~~~ 120 (334) T cd05100 63 ---------------DLVSEMEMMKMIGK----HKNII--NLLG-ACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYS 120 (334) T ss_pred ---------------HHHHHHHHHHHHCC----CCCCC--EEEE-EEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCCC T ss_conf ---------------99999999986448----99975--5999-99889989999980799959999985287764433 Q ss_pred --------HCCCHHH---HHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf --------0022568---9999999999989744866178786228980289535743403121698 Q gi|254780623|r 259 --------CGHDLER---LSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 259 --------~~~d~~~---la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) .....+. ++..++. -+.-+-..++.|.|.-|.||+++.++.+-+-|||+...+.. T Consensus 121 ~~~~~~~~~~l~~~~~~~~a~qia~-Gl~yLH~~~iiHRDLKp~NILl~~~~~vKI~DFGlar~~~~ 186 (334) T cd05100 121 FDTCKLPEEQLTFKDLVSCAYQVAR-GMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHN 186 (334) T ss_pred CCCCCCCHHCCCHHHHHHHHHHHHH-HHHHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCEECCC T ss_conf 2112483201789999999999999-99999848997786861227798999899986788707888 No 281 >KOG2270 consensus Probab=98.38 E-value=1.8e-05 Score=61.64 Aligned_cols=220 Identities=19% Similarity=0.182 Sum_probs=131.9 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211---468543346917999999988788 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQE---KLLPSMRRLCFSAVVRALEQVTKM 201 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~---~~~~~~~~~~~~~~~~e~~~~l~~ 201 (517) --|..|-=|-||.|+-.| |+++||||-.--|---=.+| ++++ ++--..-.-++..+|.-++ T Consensus 150 GCiSTGKEANVYHat~~d---G~~~AIKIYKTSILvFKDRd--------RYV~GEfRFRhgyck~NPRKMVk~WA----- 213 (520) T KOG2270 150 GCISTGKEANVYHATEED---GSEFAIKIYKTSILVFKDRD--------RYVSGEFRFRHGYCKHNPRKMVKTWA----- 213 (520) T ss_pred CCCCCCCCCEEEEEECCC---CCEEEEEEEEEEEEEEECHH--------HHCCCEEEEECCCCCCCCHHHHHHHH----- T ss_conf 423047533057630679---86678998764478871311--------20255023323543578188999999----- Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHH---HHHHHHHHHHHH Q ss_conf 86559999889872024467766430000102217833530024786324267733200225689---999999999989 Q gi|254780623|r 202 EMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERL---SVTLVQSFLLHT 278 (517) Q Consensus 202 ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~l---a~~l~~~~~~qi 278 (517) ..|.+|+.|++. .+|-+|+|+ +--.+||||+|+-+.--. .+.|+...+.+.++ -..++ .+++-+ T Consensus 214 ----EKE~RNLkRl~~-----aGIP~PePI--lLk~hVLVM~FlGrdgw~-aPkLKd~~ls~~ka~~~Y~~~v-~~MR~l 280 (520) T KOG2270 214 ----EKEMRNLKRLNN-----AGIPCPEPI--LLKNHVLVMEFLGRDGWA-APKLKDASLSTSKARELYQQCV-RIMRRL 280 (520) T ss_pred ----HHHHHHHHHHHH-----CCCCCCCCE--EEECCEEEEEECCCCCCC-CCCCCCCCCCHHHHHHHHHHHH-HHHHHH T ss_conf ----999988999983-----699999843--451536766301578876-7330256678577899999999-999999 Q ss_pred H-HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHH Q ss_conf 7-448661787862289802895357434031216989999999766999718727899999984126677893689999 Q gi|254780623|r 279 L-RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQA 357 (517) Q Consensus 279 ~-~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~ 357 (517) + ..+..|||+--=|+++ -+|++++||-+.--+.+-..... +..-|...+-+.+..+|+..-. T Consensus 281 Y~~c~LVHADLSEfN~Ly-hdG~lyiIDVSQSVE~DHP~ald-------FLRmDc~NVn~FF~r~gv~v~t--------- 343 (520) T KOG2270 281 YQKCRLVHADLSEFNLLY-HDGKLYIIDVSQSVEHDHPHALD-------FLRMDCNNVNDFFRRLGVAVMT--------- 343 (520) T ss_pred HHHHCEECCCHHHHHHEE-ECCEEEEEECCCCCCCCCHHHHH-------HHHHHHHHHHHHHHHCCCEEEC--------- T ss_conf 987550015565531137-77879999764334678805889-------9998777789999970880200--------- Q ss_pred HHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCC Q ss_conf 998521001334333113568999997545279 Q gi|254780623|r 358 IRAIGEPIHGQSSDVISMGKLLTMLFEITELFD 390 (517) Q Consensus 358 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 390 (517) ++.+++-+.+..+...++...+..+..+..... T Consensus 344 ~r~LFefI~d~~i~~~nmd~~l~~l~~~~~~r~ 376 (520) T KOG2270 344 VRELFEFITDPTITLENMDAYLEELKAIIISRD 376 (520) T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC T ss_conf 888999860565221107889999999986276 No 282 >cd07862 STKc_CDK6 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cyt Probab=98.38 E-value=2.3e-06 Score=68.52 Aligned_cols=145 Identities=23% Similarity=0.266 Sum_probs=79.2 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-|+.||-|.||+|+-. .++++.||||+.+-...+. ...... T Consensus 7 ~~iG~G~fg~V~~~~~~-~~~~~~vAiK~i~~~~~~~--------------------------------~~~~~~----- 48 (290) T cd07862 7 AEIGEGAYGKVFKARDL-KNGGRFVALKRVRVQTGEE--------------------------------GMPLST----- 48 (290) T ss_pred EEEECCCCCEEEEEEEE-CCCCEEEEEEEECCCCCCH--------------------------------HHHHHH----- T ss_conf 58641438099999998-9899899999984000330--------------------------------448999----- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCC-------HHCCCCEEEEECCCCCCCCH-HHHHHHHCCCHH---HHHHHHHHH Q ss_conf 5999988987202446776643000010-------22178335300247863242-677332002256---899999999 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDW-------NRTERDVITMEWIDGVKISD-TEKLRACGHDLE---RLSVTLVQS 273 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~-------~~st~~VLvmE~i~G~~i~d-~~~l~~~~~d~~---~la~~l~~~ 273 (517) .+|..-+..+.. + +.|.|. +.|. +..+.-.+||||++|- +.+ +......+...+ .++..++.+ T Consensus 49 -~~Ei~il~~l~~-~-~HpnIv--~l~d~~~~~~~~~~~~~~iv~E~~~~~-L~~~l~~~~~~~~~~~~i~~i~~Qil~a 122 (290) T cd07862 49 -IREVAVLRHLET-F-EHPNVV--RLFDVCTVSRTDRETKLTLVFEHVDQD-LTTYLDKVPEPGVPTETIKDMMFQLLRG 122 (290) T ss_pred -HHHHHHHHHHHH-C-CCCCEE--EEEEEEEECCCCCCCEEEEEEECCCCC-HHHHHHHCCCCCCCHHHHHHHHHHHHHH T ss_conf -999999997615-6-899988--898788522457887699999779998-8999986667898999999999999999 Q ss_pred HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 99989744866178786228980289535743403121698 Q gi|254780623|r 274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) +.-+-..|+.|-|.-|.||+++.+|.+-+.|||+....+. T Consensus 123 -l~ylH~~~IiHRDlKPeNILl~~~~~vKl~DFGla~~~~~ 162 (290) T cd07862 123 -LDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSF 162 (290) T ss_pred -HHHHHHCCCEECCCCHHHEEECCCCCEEECCCCCCEECCC T ss_conf -9999988934354645235898999979732343055367 No 283 >cd05103 PTKc_VEGFR2 Catalytic Domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp Probab=98.37 E-value=8e-07 Score=72.03 Aligned_cols=34 Identities=18% Similarity=0.389 Sum_probs=30.2 Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC Q ss_conf 7448661787862289802895357434031216 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL 312 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l 312 (517) -..|+.|-|.-|.|++++.++.+-+-|||+...+ T Consensus 196 h~~~ivHRDLK~~NiLl~~~~~vKi~DFGlar~~ 229 (343) T cd05103 196 ASRKCIHRDLAARNILLSENNVVKICDFGLARDI 229 (343) T ss_pred HHCCCCCCCCCCCEEEECCCCCEEECCCCCCCCC T ss_conf 8788666747850075778997898137234014 No 284 >pfam03881 Fructosamin_kin Fructosamine kinase. This family includes eukaryotic fructosamine-3-kinase enzymes. The family also includes bacterial members that have not been characterized but probably have a similar or identical function. Probab=98.37 E-value=1.7e-06 Score=69.58 Aligned_cols=232 Identities=14% Similarity=0.095 Sum_probs=113.3 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 899999875404788999999867-6667788886555502128887236876403104688777788999875321146 Q gi|254780623|r 101 TNTARLSVASALKAPIEELYCEFD-DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKL 179 (517) Q Consensus 101 ~~~v~~~ie~elg~~~~~~F~~fd-ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~ 179 (517) |..+.+.|.+.+|.+..- -+ +|++.++|.|+++-.. +++.+.||+.+..-...++...+-|+.++..-.-. T Consensus 1 ~~~i~~~l~~~~g~~~~i----~~~~~v~GGdIn~a~~l~~----~~~~~FvK~~~~~~~~~F~~Ea~gL~~L~~~~~~~ 72 (287) T pfam03881 1 WQAIAQQLSEQLGTPFTI----TEREKVGGGDINQAYRISD----GEQRYFVKLNEREALAMFEAEAEGLELLARTQTIR 72 (287) T ss_pred CHHHHHHHHHHHCCCCCC----CEEEECCCCCHHHEEEEEE----CCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC T ss_conf 957999999987899631----0334428841733688980----89768999679542789999999999898669988 Q ss_pred CCCCCCCCHHH----HHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCC----- Q ss_conf 85433469179----999999887-88865599998898720244677664300001022178335300247863----- Q gi|254780623|r 180 LPSMRRLCFSA----VVRALEQVT-KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVK----- 249 (517) Q Consensus 180 ~~~~~~~~~~~----~~~e~~~~l-~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~----- 249 (517) +|.--...-.+ ++-|+-..- ...-+...=++.+.++.+. ...+.+=.|. +.+++...-...|.+... T Consensus 73 vP~vi~~g~~~~~~~Lvle~i~~~~~~~~~~~~LG~~LA~LH~~-~~~~~FGf~~--d~~iG~~~Q~N~w~~~W~~Ff~~ 149 (287) T pfam03881 73 VPRVIAWGSTRDHSFLVLEYLPLGPDNTGSAYQLGQQLAKLHQW-GEQKQFGFDF--DNTIGSTPQPNRWQSSWADFFAE 149 (287) T ss_pred CCCEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHC-CCCCCCCCCC--CCCCCCCCCCCCCCCCHHHHHHH T ss_conf 99568863459964899861035899807899999999998714-8988988988--89877604689876889999999 Q ss_pred --CC-HHHHHHHHCCCH---HHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHH Q ss_conf --24-267733200225---689999999999989744866178786228980289535743403121698999999976 Q gi|254780623|r 250 --IS-DTEKLRACGHDL---ERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEI 323 (517) Q Consensus 250 --i~-d~~~l~~~~~d~---~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l 323 (517) +. .+....+.+... .++.+++...+-...-.--..|||..+||++++.+|+.+++|=.+-. =+++.=-++..+ T Consensus 150 ~RL~~ql~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~PsLlHGDLW~GN~~~~~~G~p~liDPA~yy-G~rE~DLAm~~l 228 (287) T pfam03881 150 QRIGWQLQLAKEKGLSFGDIDRLVERVADLLSGHQPQPSLLHGDLWSGNAAFTADGEPVIFDPACYY-GDRECDLAMTEL 228 (287) T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEECCCCCEEEECCHHCC-CCCHHHHHHHHH T ss_conf 8299999999974997677999999999984258998300225535652558479987897543115-770776787773 Q ss_pred HHHHHCCCHHHHHHHHHHHHCCCCC Q ss_conf 6999718727899999984126677 Q gi|254780623|r 324 LYGFISRDYQRVADVHFEAGYVPRH 348 (517) Q Consensus 324 ~~a~~~~D~~~~~~~l~~lg~~~~~ 348 (517) |-+ -.+...++..+.--..++ T Consensus 229 Fgg----f~~~Fy~~Y~~~~Pl~~g 249 (287) T pfam03881 229 FGG----FPPDFYDGYQSVYPLDEG 249 (287) T ss_pred CCC----CCHHHHHHHHHHCCCCCC T ss_conf 278----759999999972799828 No 285 >cd07856 STKc_Sty1_Hog1 The catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1 subfamily. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic Probab=98.37 E-value=1.4e-06 Score=70.22 Aligned_cols=140 Identities=18% Similarity=0.234 Sum_probs=80.0 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) ++|++||-|+||+|+-+ .+|+.||||+.+.... .+ .....+ T Consensus 16 ~~IG~G~fg~Vy~a~d~--~tg~~vAiK~i~~~~~--------------------~~------------~~~~~~----- 56 (328) T cd07856 16 QPVGMGAFGLVCSARDQ--LTGQNVAIKKIMKPFS--------------------TP------------VLAKRT----- 56 (328) T ss_pred EEEECCCCEEEEEEEEC--CCCCEEEEEEECCHHC--------------------CH------------HHHHHH----- T ss_conf 79723718499999988--9998999999871115--------------------96------------899999----- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHC Q ss_conf 599998898720244677664300001022178335300247863242677332002256---89999999999989744 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLE---RLSVTLVQSFLLHTLRD 281 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~l~~~~~~qi~~~ 281 (517) .+|.+.+.+++. ..-|.+=.+|.+-...-.+|||++ |..+.+. ++....+.. .++..++.+ +.-+-.. T Consensus 57 -~rEi~iL~~l~H----pnIV~l~~~f~~~~~~~~iv~e~~-g~~L~~~--l~~~~l~~~~~~~~~~Qil~a-L~yLH~~ 127 (328) T cd07856 57 -YRELKLLKHLRH----ENIISLSDIFISPLEDIYFVTELL-GTDLHRL--LTSRPLEKQFIQYFLYQILRG-LKYVHSA 127 (328) T ss_pred -HHHHHHHHHCCC----CCEEEEEEEEECCCCEEEEEEECC-CCCHHHH--HHCCCCCHHHHHHHHHHHHHH-HHHHHHC T ss_conf -999999986689----898316779981897099999366-6879999--972999999999999999999-9999878 Q ss_pred CEECCCCCCCEEEEECCCCEEEEECCHHEEC Q ss_conf 8661787862289802895357434031216 Q gi|254780623|r 282 GFFHADLHPGNLFVDSKGYIVAVDMGITGRL 312 (517) Q Consensus 282 GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l 312 (517) |+.|-|.-|.||+++.++.+-+.|||..... T Consensus 128 ~IiHRDIKPeNILl~~~~~vKL~DFGla~~~ 158 (328) T cd07856 128 GVVHRDLKPSNILINENCDLKICDFGLARIQ 158 (328) T ss_pred CCEECCCCHHHEEECCCCCEEEEECCCCCCC T ss_conf 8556667558868889998699967777547 No 286 >KOG0594 consensus Probab=98.37 E-value=1.3e-06 Score=70.46 Aligned_cols=146 Identities=23% Similarity=0.297 Sum_probs=89.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH Q ss_conf 99999867666778888655550212888723687640310468877778899987532114685433469179999999 Q gi|254780623|r 117 EELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALE 196 (517) Q Consensus 117 ~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~ 196 (517) -+.|..+| -++.++.|-||+|+-+. +|+.||+|..|=.-++ +. .|. T Consensus 10 ~~~~~~~e-klGeGtyg~Vykar~~~--~g~~VALKkirl~~~~----------------EG-~P~-------------- 55 (323) T KOG0594 10 MFDYEKVE-KLGEGTYGVVYKARSKR--TGKFVALKKIRLEFEE----------------EG-VPS-------------- 55 (323) T ss_pred HHHHHHHH-HHCCCCCEEEEEEEEEC--CCCEEEEEEEECCCCC----------------CC-CCC-------------- T ss_conf 78889999-96799735899999806--8987999998624556----------------68-984-------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCH----HCCCC-EEEEECCCCCCCCHHHHHHH--HCCCHHHHHHH Q ss_conf 8878886559999889872024467766430000102----21783-35300247863242677332--00225689999 Q gi|254780623|r 197 QVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWN----RTERD-VITMEWIDGVKISDTEKLRA--CGHDLERLSVT 269 (517) Q Consensus 197 ~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~----~st~~-VLvmE~i~G~~i~d~~~l~~--~~~d~~~la~~ 269 (517) +..+|..+..+.++... -|..=.+... -|..+ .||+||++-.--.-.+.... .|.+. . T Consensus 56 -taiREisllk~L~~~~~---------iv~L~dv~~~~~~~~~~~~l~lvfe~~d~DL~~ymd~~~~~~~g~~~-----~ 120 (323) T KOG0594 56 -TAIREISLLKRLSHANH---------IVRLHDVIHTSNNHRGIGKLYLVFEFLDRDLKKYMDSLPKKPQGLPP-----R 120 (323) T ss_pred -HHHHHHHHHHHHCCCCC---------EEEEEEEEEECCCCCCCCEEEEEEEEECCCHHHHHHHCCCCCCCCCH-----H T ss_conf -14679999997477767---------57777567504545666359999986435089999844665568988-----9 Q ss_pred HHHHHHHHHH-------HCCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 9999999897-------44866178786228980289535743403121 Q gi|254780623|r 270 LVQSFLLHTL-------RDGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 270 l~~~~~~qi~-------~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) .+..|+.|++ .+|..|-|.+|.||+|+++|.+-+.|||.... T Consensus 121 ~ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlLi~~~G~lKlaDFGlAra 169 (323) T KOG0594 121 LIKSFMRQLLRGLAFLHSHGILHRDLKPQNLLISSSGVLKLADFGLARA 169 (323) T ss_pred HHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEECCCCCEEEEECCHHHH T ss_conf 9999999999999999867822466870017887988686610442777 No 287 >pfam06176 WaaY Lipopolysaccharide core biosynthesis protein (WaaY). This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY). The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system. Probab=98.36 E-value=7.8e-07 Score=72.13 Aligned_cols=130 Identities=17% Similarity=0.273 Sum_probs=82.3 Q ss_pred CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 87236876403104688777788999875321146854334691799999998878886559999889872024467766 Q gi|254780623|r 145 GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQG 224 (517) Q Consensus 145 ~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~ 224 (517) .|.+-++|+-||... +.=+++..++ . .++...+..++|-.+...-. .-+++. T Consensus 53 ~~~kyIlK~~~~~~~-------~~eR~~~s~i----k-----------g~~y~~li~~~~~~~~eG~~------~~nd~y 104 (229) T pfam06176 53 DYGKYVLKVFAPKVK-------RNERFLKSLV----K-----------GDYYENLIVQTDRVRSEGLT------SLNDFY 104 (229) T ss_pred CCCEEEEECCCCCCC-------HHHHHHHHHH----C-----------CHHHHHHHHHHHHHHHCCCC------CCCCEE T ss_conf 595589966752111-------2899999986----1-----------48999999999988761330------003200 Q ss_pred CCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEE Q ss_conf 43000010221783353002478632426773320022568999999999998974486617878622898028953574 Q gi|254780623|r 225 FRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAV 304 (517) Q Consensus 225 v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~l 304 (517) +.+-+-.--+|..-+++||||+|++++|.....+. +... +.....|+-.+|+.|+||||||+.+ ++|.+-+| T Consensus 105 l~aekk~~r~~~~~i~l~EYIEG~~l~~~~dI~e~------~~~~-Ik~~I~~LH~~g~~sgD~h~gNFI~-s~~~irII 176 (229) T pfam06176 105 LLAERKTLNYAHTYIMLIEYIEGVELNDMPEISED------VKAK-IKQSIESLHQHGMVSGDPHRGNFIV-SKDGVRII 176 (229) T ss_pred EEEEHHHCCEEEEEEEEEEEECCCCCCCCCCCCHH------HHHH-HHHHHHHHHHCCCCCCCCCCCCEEE-ECCCEEEE T ss_conf 13121425601456666532257324664445666------7999-9999999997166358998765475-08977999 Q ss_pred ECCHHE Q ss_conf 340312 Q gi|254780623|r 305 DMGITG 310 (517) Q Consensus 305 DfG~vg 310 (517) |.---+ T Consensus 177 DlsgK~ 182 (229) T pfam06176 177 DLSGKR 182 (229) T ss_pred ECCCCC T ss_conf 888851 No 288 >cd07858 STKc_TEY_MAPK_plant The catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the acti Probab=98.36 E-value=1e-06 Score=71.18 Aligned_cols=145 Identities=19% Similarity=0.254 Sum_probs=79.0 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.||-|+||+|+-.. +|+.||||+.+........ ... T Consensus 11 k~IG~G~fG~Vy~a~~~~--tg~~vAiK~i~~~~~~~~~--------------------------------~~~------ 50 (337) T cd07858 11 KPIGRGAYGIVCSAKNSE--TNEKVAIKKIANAFDNRID--------------------------------AKR------ 50 (337) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECCHHCCHHH--------------------------------HHH------ T ss_conf 797227385999999889--9989999998802228788--------------------------------999------ Q ss_pred HHHHHHHHHHHHC-CCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHH-CCC---HHHHHHHHHHHHHHHHH Q ss_conf 5999988987202-446776643000010221783353002478632426773320-022---56899999999999897 Q gi|254780623|r 205 LRLEAAAFSEMAE-NTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRAC-GHD---LERLSVTLVQSFLLHTL 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~-~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~-~~d---~~~la~~l~~~~~~qi~ 279 (517) ..+|.+.+..++. |.-...++..|.-. +....-.++||+++| .+.+. ++.. ... .+.++..++.+ +.-+- T Consensus 51 ~~~Ei~il~~l~HpnIv~l~~~~~~~~~-~~~~~~yiv~e~~~~-~L~~~--i~~~~~l~e~~~~~i~~Qil~a-L~yLH 125 (337) T cd07858 51 TLREIKLLRHLDHENVIAIKDIMPPPHR-EAFNDVYIVYELMDT-DLHQI--IRSSQTLSDDHCQYFLYQLLRG-LKYIH 125 (337) T ss_pred HHHHHHHHHHCCCCCEEEEEEEEECCCC-CCCCEEEEEEECCCC-CHHHH--HHCCCCCCHHHHHHHHHHHHHH-HHHHH T ss_conf 9999999986579996059888703664-555448999962697-47999--8707999999999999999999-99997 Q ss_pred HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 44866178786228980289535743403121698 Q gi|254780623|r 280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) ..|+.|-|.-|.||+++.++.+-+.|||.....+. T Consensus 126 ~~~IiHRDlKPeNILl~~~~~iKL~DFGlAk~~~~ 160 (337) T cd07858 126 SANVLHRDLKPSNLLLNANCDLKICDFGLARTTSE 160 (337) T ss_pred HCCCEECCCCHHHEEECCCCCEEEEECCCCCCCCC T ss_conf 78950035856986987999889631266633677 No 289 >cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (Repeat 1) Domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity Probab=98.36 E-value=1.4e-06 Score=70.06 Aligned_cols=139 Identities=12% Similarity=0.164 Sum_probs=80.1 Q ss_pred HHHHHHHHHHHHHHHEECCC-C----CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 66677888865555021288-8----723687640310468877778899987532114685433469179999999887 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDIN-G----YRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT 199 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~-~----g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 199 (517) |-|++||.|+||+|+.++.. . ..+||||+....-. +..+ T Consensus 1 e~iG~G~fg~Vykg~~~~~~~~~~~~~~~vaiK~~~~~~~------------------------------~~~~------ 44 (258) T cd05078 1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHR------------------------------NYSE------ 44 (258) T ss_pred CCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEECCCCC------------------------------HHHH------ T ss_conf 9155689989999998988874413003889998555661------------------------------5899------ Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHHHC--CCH---HHHHHHHHH Q ss_conf 88865599998898720244677664300001022--17833530024786324267733200--225---689999999 Q gi|254780623|r 200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRACG--HDL---ERLSVTLVQ 272 (517) Q Consensus 200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~~~--~d~---~~la~~l~~ 272 (517) .|.+|+.-+.+++. |.|. +.|.-. .....|||||++|-.+.+. ++..+ .+. -+++..++. T Consensus 45 ----~f~~E~~il~~l~H-----pnIV--~~~g~~~~~~~~~lV~Ey~~~GsL~~~--L~~~~~~~~~~~~l~i~~qia~ 111 (258) T cd05078 45 ----SFFEAASMMSQLSH-----KHLV--LNYGVCVCGDESIMVQEYVKFGSLDTY--LKKNKNLINISWKLEVAKQLAW 111 (258) T ss_pred ----HHHHHHHHHHHCCC-----CCEE--EEEEEEEECCEEEEEEEECCCCCHHHH--HHHCCCCCCHHHHHHHHHHHHH T ss_conf ----99999999986899-----7874--599999989988999992899958998--7501678999999999999999 Q ss_pred HHHHHHHHCCEECCCCCCCEEEEECCCC--------EEEEECCHHEECC Q ss_conf 9999897448661787862289802895--------3574340312169 Q gi|254780623|r 273 SFLLHTLRDGFFHADLHPGNLFVDSKGY--------IVAVDMGITGRLS 313 (517) Q Consensus 273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~--------i~~lDfG~vg~l~ 313 (517) + +.-+-..|+.|.|.-|.||+++.++. +-+-|||+...+. T Consensus 112 g-l~yLH~~~iiHrDlK~~NiLl~~~~~~k~~~~~~~kl~DfG~s~~~~ 159 (258) T cd05078 112 A-LHFLEDKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVL 159 (258) T ss_pred H-HHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEECCCCCCEEEE T ss_conf 9-99974489877856766388846677443675541322788760660 No 290 >cd05071 PTKc_Src Catalytic Domain of the Protein Tyrosine Kinase, Src. Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo Probab=98.35 E-value=8.3e-07 Score=71.92 Aligned_cols=142 Identities=15% Similarity=0.192 Sum_probs=90.7 Q ss_pred HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 99867--6667788886555502128887236876403104688777788999875321146854334691799999998 Q gi|254780623|r 120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ 197 (517) Q Consensus 120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 197 (517) +++|+ +-||.|+-|.||+|++++ +.+||||+.+++-.+ . + T Consensus 5 ~e~~~~~~~iG~G~fg~Vy~g~~~~---~~~VAiK~~~~~~~~---------------------------~----~---- 46 (262) T cd05071 5 RESLRLEVKLGQGCFGEVWMGTWNG---TTRVAIKTLKPGTMS---------------------------P----E---- 46 (262) T ss_pred HHHEEEEEEEEECCCCEEEEEEECC---CCEEEEEEECCCCCC---------------------------H----H---- T ss_conf 7997976899407683999999999---999999998736799---------------------------8----9---- Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHHHC-CC---HHHHHHHHH Q ss_conf 878886559999889872024467766430000102217--833530024786324267733200-22---568999999 Q gi|254780623|r 198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRACG-HD---LERLSVTLV 271 (517) Q Consensus 198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~~~-~d---~~~la~~l~ 271 (517) .|.+|++-+.+++. +.| -+.|. .|+ +-.+||||++|-.+.+.-.-+... .. .-.++..++ T Consensus 47 ------~~~~Ei~~l~~l~H-----~nI--v~~~g-~~~~~~~~iv~Ey~~~G~L~~~l~~~~~~~~~~~~~~~i~~~ia 112 (262) T cd05071 47 ------AFLQEAQVMKKLRH-----EKL--VQLYA-VVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIA 112 (262) T ss_pred ------HHHHHHHHHHHCCC-----CCE--EEEEE-EEECCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH T ss_conf ------99999999986899-----897--66999-99269649999817999899998545587899999999999999 Q ss_pred HHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 9999989744866178786228980289535743403121698 Q gi|254780623|r 272 QSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 272 ~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) .+ +.-+-..|+.|.|.-|.||++++++.+-+.|||+...+.+ T Consensus 113 ~g-l~yLH~~~iiHrDLK~~NILl~~~~~~Kl~DFGls~~~~~ 154 (262) T cd05071 113 SG-MAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIED 154 (262) T ss_pred HH-HHHHHHCCEEECEECCCCEEECCCCEEEECCCCCCEECCC T ss_conf 99-9998648887246051517887998299812787648778 No 291 >cd05102 PTKc_VEGFR3 Catalytic Domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V Probab=98.32 E-value=3.7e-06 Score=66.86 Aligned_cols=35 Identities=17% Similarity=0.360 Sum_probs=30.4 Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf 74486617878622898028953574340312169 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) -..++.|.|.-|.|++++.++.+-+-|||+...+. T Consensus 191 h~~~iiHRDLK~~NiLl~~~~~vKi~DFGlsr~~~ 225 (338) T cd05102 191 ASRKCIHRDLAARNILLSENNVVKICDFGLARDIY 225 (338) T ss_pred HHCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCC T ss_conf 85892346688686998899988983354651456 No 292 >cd07857 STKc_MPK1 The catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1 subfamily. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape Probab=98.32 E-value=1e-06 Score=71.17 Aligned_cols=141 Identities=19% Similarity=0.272 Sum_probs=78.1 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.|+-|.||+|+-...+.|..||||.......+.+ ...... T Consensus 6 ~~iG~G~fG~V~~a~~~~t~~~~~vAiK~i~~~~~~~~--------------------------------~~~~~~---- 49 (332) T cd07857 6 KELGQGAYGIVCSARNAETNEEETVAIKKVTNVFSKKI--------------------------------LAKRAL---- 49 (332) T ss_pred EEEECCCCEEEEEEEECCCCCCEEEEEEEECCHHHCHH--------------------------------HHHHHH---- T ss_conf 59432558299999983179865999999780331558--------------------------------899999---- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCH---H-CCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH- Q ss_conf 599998898720244677664300---0-01022178335300247863242677332002256899999999999897- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVP---K-IDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL- 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP---~-vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~- 279 (517) +|.+.+.+++ +.+.|.-- . ++.+-...-.++||+++| .+.+. ++..+ .+.+.-+..|+.|++ T Consensus 50 --rEi~il~~l~----~HpnIv~l~~~~~~~~~~~~~~~l~~e~~~~-~L~~~--l~~~~----~l~e~~~~~~~~qil~ 116 (332) T cd07857 50 --REIKLLRHFR----GHKNITCLYDMDIVFPGNFNEVYLYEELMEA-DLHQI--IRSGQ----PLTDAHFQSFIYQILC 116 (332) T ss_pred --HHHHHHHHHC----CCCCEEEEEECCCCCCCCCCEEEEEEECCCC-CHHHH--HHHCC----CCCHHHHHHHHHHHHH T ss_conf --9999999740----6999879972230015888779999967899-88999--98279----9999999999999999 Q ss_pred ------HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf ------44866178786228980289535743403121698 Q gi|254780623|r 280 ------RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 280 ------~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) ..|+.|-|.-|.||+++.+|.+-+.|||....+++ T Consensus 117 aL~ylH~~~IiHRDlKPeNILl~~~~~vKl~DFGla~~~~~ 157 (332) T cd07857 117 GLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLARGFSE 157 (332) T ss_pred HHHHHHHCCCEECCCCHHHEEECCCCCEEEEECCCCCCCCC T ss_conf 99999879842125778996887899877604251111577 No 293 >cd05106 PTKc_CSF-1R Catalytic Domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-stimulating factor-1 receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti Probab=98.32 E-value=4.4e-06 Score=66.30 Aligned_cols=36 Identities=14% Similarity=0.286 Sum_probs=30.7 Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 744866178786228980289535743403121698 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) -..++.|-|..+-|++|+.++.+-+-|||+...+.. T Consensus 229 ~s~~iIHRDLaarNiLv~~~~~vKIaDFGLsr~~~~ 264 (374) T cd05106 229 ASKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMN 264 (374) T ss_pred HHCCEECCCCCHHEEEECCCCCEEEEECCCCCCCCC T ss_conf 878923276774018986898299953610100346 No 294 >KOG0583 consensus Probab=98.31 E-value=7.9e-07 Score=72.11 Aligned_cols=143 Identities=21% Similarity=0.300 Sum_probs=90.0 Q ss_pred HHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 76667788886555502128887236876403104688777788999875321146854334691799999998878886 Q gi|254780623|r 124 DDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM 203 (517) Q Consensus 124 dePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El 203 (517) ...++++|.|-|+.|.-.. +|+.||||+.... ..+... ... ...+. T Consensus 22 ~~~lG~GsfgkV~~a~~~~--t~~~vAiKii~~~---------------------~~~~~~-~~~-------~~~i~--- 67 (370) T KOG0583 22 GRTLGSGSFGKVKLAKHRL--TGEKVAIKIIDRK---------------------KVSSKS-QKL-------DELIK--- 67 (370) T ss_pred CCCCCCCCCEEEEEEEECC--CCCEEEEEEECCC---------------------CCCCCH-HHH-------HHHHH--- T ss_conf 3656888861057642035--7976767864300---------------------155410-234-------43335--- Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH---- Q ss_conf 5599998898720244677664300001022178335300247863242677332002256899999999999897---- Q gi|254780623|r 204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL---- 279 (517) Q Consensus 204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~---- 279 (517) +|..++++++.+= .-+.+-+|+. ..+.-.+||||+.|--+-+ .+.. ...+.+..++.||+|+. T Consensus 68 ---rEi~~~~~~~~Hp---nI~~l~ev~~-t~~~~~ivmEy~~gGdL~~--~i~~----~g~l~E~~ar~~F~Qlisav~ 134 (370) T KOG0583 68 ---REISILRRLRSHP---NIIRLLEVFA-TPTKIYIVMEYCSGGDLFD--YIVN----KGRLKEDEARKYFRQLISAVA 134 (370) T ss_pred ---HHHHHHHHCCCCC---CEEEEEEEEE-CCCEEEEEEECCCCCCHHH--HHHH----CCCCCHHHHHHHHHHHHHHHH T ss_conf ---7999874145799---8833367885-5871899982278814899--9986----489887999999999999999 Q ss_pred ---HCCEECCCCCCCEEEEECC-CCEEEEECCHHEECC Q ss_conf ---4486617878622898028-953574340312169 Q gi|254780623|r 280 ---RDGFFHADLHPGNLFVDSK-GYIVAVDMGITGRLS 313 (517) Q Consensus 280 ---~~GfFHaDPHpGNi~v~~d-g~i~~lDfG~vg~l~ 313 (517) ..|.+|-|.-|.||+++.+ +.+-+.|||.....+ T Consensus 135 y~H~~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~~~ 172 (370) T KOG0583 135 YCHSRGIVHRDLKPENILLDGNEGNLKLSDFGLSAISP 172 (370) T ss_pred HHHHCCCCCCCCCHHHEEECCCCCCEEEEECCCCCCCC T ss_conf 88755975565778773323888857985378851357 No 295 >KOG0192 consensus Probab=98.29 E-value=1.2e-05 Score=62.84 Aligned_cols=221 Identities=16% Similarity=0.123 Sum_probs=122.8 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCE-EEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 666778888655550212888723-6876403104688777788999875321146854334691799999998878886 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRK-VAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM 203 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~-VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El 203 (517) +-++++|-|+||+|..+ |+. ||||+..+.-.. + .. +- T Consensus 47 ~~iG~G~~g~V~~~~~~----g~~~vavK~~~~~~~~--------------------~-------~~-----------~~ 84 (362) T KOG0192 47 EVLGSGSFGTVYKGKWR----GTDVVAVKIISDPDFD--------------------D-------ES-----------RK 84 (362) T ss_pred HCCCCCCCEEEEEEECC----CCCEEEEEEECCCCCC--------------------H-------HH-----------HH T ss_conf 01267786159997537----8600799991650028--------------------4-------77-----------99 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC----CEEEEECCCCCCCCHHHHH-HHHCCCHHHHHHHHHHHHHHH- Q ss_conf 5599998898720244677664300001022178----3353002478632426773-320022568999999999998- Q gi|254780623|r 204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER----DVITMEWIDGVKISDTEKL-RACGHDLERLSVTLVQSFLLH- 277 (517) Q Consensus 204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~----~VLvmE~i~G~~i~d~~~l-~~~~~d~~~la~~l~~~~~~q- 277 (517) +|.+|+.-+.+.+. -.-|.+. ..|++ -.|||||++|-.+.++-.- .....+.+.......+.---| T Consensus 85 ~f~~E~~il~~l~H----pNIV~f~----G~~~~~~~~~~iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~ 156 (362) T KOG0192 85 AFRREASLLSRLRH----PNIVQFY----GACTSPPGSLCIVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGME 156 (362) T ss_pred HHHHHHHHHHHCCC----CCCCEEE----EEEECCCCCEEEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH T ss_conf 99999999976789----9845177----889238986489998689992999976502567899999999999998887 Q ss_pred -HHHCC-EECCCCCCCEEEEECCC-CEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHH--HHCCCCCCCHH Q ss_conf -97448-66178786228980289-535743403121698999999976699971872789999998--41266778936 Q gi|254780623|r 278 -TLRDG-FFHADLHPGNLFVDSKG-YIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFE--AGYVPRHHNRF 352 (517) Q Consensus 278 -i~~~G-fFHaDPHpGNi~v~~dg-~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~--lg~~~~~~d~~ 352 (517) +-..+ .+|.|.-|-|++++.++ .+-+-|||+........ .-..-..+.+..++=.+++ -...+..+|.- T Consensus 157 YLH~~~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~------~~~~~~~GT~~wMAPEv~~~~~~~~~~K~Dvy 230 (362) T KOG0192 157 YLHSEGPIIHRDLKSDNILVDLKGKTLKIADFGLSREKVISK------TSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVY 230 (362) T ss_pred HHCCCCCEEEEECCCCCEEECCCCCEEEECCCCCCHHHHCCC------CCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHH T ss_conf 650589778743585427774888878879888775540245------55546789612238656426676665035222 Q ss_pred HHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCC--CCCCHHHHHHHHH Q ss_conf 89999998521001334333113568999997545279--7128889999999 Q gi|254780623|r 353 SFAQAIRAIGEPIHGQSSDVISMGKLLTMLFEITELFD--MMTRPELVMLQKT 403 (517) Q Consensus 353 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~P~~~~ll~r~ 403 (517) .|.--+-+++.. ..|..+.+..++...+..-..+-. -..|+.+.-++.. T Consensus 231 SFgIvlWEl~t~--~~Pf~~~~~~~~~~~v~~~~~Rp~~p~~~~~~l~~l~~~ 281 (362) T KOG0192 231 SFGIVLWELLTG--EIPFEDLAPVQVASAVVVGGLRPPIPKECPPHLSSLMER 281 (362) T ss_pred HHHHHHHHHHHC--CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH T ss_conf 138899987507--878887766788999984688899865488899999998 No 296 >cd05104 PTKc_Kit Catalytic Domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce Probab=98.29 E-value=7.4e-06 Score=64.54 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=30.8 Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 744866178786228980289535743403121698 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) -..++.|.|.-+-|+++..+..+-+-|||+...+.. T Consensus 231 ~~~~~iHrDLaaRNvlv~~~~~~Ki~DFGlsr~~~~ 266 (375) T cd05104 231 ASKNCIHRDLAARNILLTHGRITKICDFGLARDIRN 266 (375) T ss_pred HHCCCCCCCCCCCCEEECCCCCEEECCCCCCEECCC T ss_conf 868904361574625666999189797622125257 No 297 >cd06617 PKc_MKK3_6 Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threon Probab=98.28 E-value=2.5e-07 Score=75.97 Aligned_cols=142 Identities=19% Similarity=0.243 Sum_probs=78.9 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +.|+.|+-|.||+|+-+. +|+.||||+.+..+... + ...+..|++ T Consensus 7 ~~iG~G~fg~V~~~~~~~--t~~~vAiK~i~~~~~~~--------------------------------~-~~~~~~e~~ 51 (280) T cd06617 7 EELGRGAYGVVDKMRHVP--TGTIMAVKRIRATVNSQ--------------------------------E-QKRLLMDLD 51 (280) T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCCCH--------------------------------H-HHHHHHHHH T ss_conf 897227682999999879--99799999989113867--------------------------------9-999999999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHH-HHHHHHC--CCH---HHHHHHHHHHHHH Q ss_conf 5999988987202446776643000010221--783353002478632426-7733200--225---6899999999999 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDT-EKLRACG--HDL---ERLSVTLVQSFLL 276 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~-~~l~~~~--~d~---~~la~~l~~~~~~ 276 (517) . .++. .+.|.|. +.|..+. +.-.++|||++|. +.+. ......+ ..- ..++..++.+.- T Consensus 52 ~-----~~~~-----~~hp~iv--~~~~~~~~~~~~~ivmE~~~~~-l~~~~~~~~~~~~~~~e~~~~~i~~qil~gl~- 117 (280) T cd06617 52 I-----SMRS-----SDCPYTV--HFYGALFREGDVWICMEVMDTS-LDKFYKKVYKKGLTIPEDILGKIAVSVVKALE- 117 (280) T ss_pred H-----HHHH-----CCCCCEE--EEEEEEEECCEEEEEEECCCCC-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH- T ss_conf 9-----9985-----7999875--6999998899899999937999-89999999864899989999999999999999- Q ss_pred HHHHC-CEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 89744-8661787862289802895357434031216989 Q gi|254780623|r 277 HTLRD-GFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 277 qi~~~-GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) -+-.. |+.|-|.-|.||+++.+|.+-+.|||..+.+.+. T Consensus 118 ylH~~~~IiHRDiKP~NILl~~~g~iKl~DFGla~~~~~~ 157 (280) T cd06617 118 YLHEKLSVIHRDVKPSNILINRNGQVKLCDFGISGYLVDS 157 (280) T ss_pred HHHHCCCEEECCCCHHHEEECCCCCEEEEECCCCCCCCCC T ss_conf 9975499885317689856779999999827676625677 No 298 >KOG2268 consensus Probab=98.19 E-value=3.7e-06 Score=66.91 Aligned_cols=158 Identities=21% Similarity=0.234 Sum_probs=101.7 Q ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 72368764031046887777889998753211468543346917999999988788865599998898720244677664 Q gi|254780623|r 146 YRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGF 225 (517) Q Consensus 146 g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v 225 (517) |.+.+.|+-|=| ++-++.++.=-.++. ....+.++-+..+.. ..|-+-|+.+.+ ..+ T Consensus 116 G~~~~lK~HRLG-----RtSFR~Vk~kRDY~r-~r~~~sWlyLSRlaa------------~kEfafmkaL~e-----~gf 172 (465) T KOG2268 116 GNPLILKLHRLG-----RTSFRNVKNKRDYLR-KRKSGSWLYLSRLAA------------TKEFAFMKALYE-----RGF 172 (465) T ss_pred CCCHHHHHHHHH-----HHHHHHHHHHHHHHH-CCCCCCHHHHHHHHH------------HHHHHHHHHHHH-----CCC T ss_conf 780567787642-----146777654026676-178620134677777------------789999999987-----599 Q ss_pred CCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEE Q ss_conf 30000102217833530024786324267733200225689999999999989744866178786228980289535743 Q gi|254780623|r 226 RVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVD 305 (517) Q Consensus 226 ~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lD 305 (517) -||++++ +++.+.|||.++|.|+..+..+. |+..+-..++....+ +-.+|+.|||-.-=||+|.+|++++.|| T Consensus 173 pVPkpiD--~~RH~Vvmelv~g~Pl~~v~~v~----d~~~ly~~lm~~Iv~-la~~GlIHgDFNEFNimv~dd~~i~vID 245 (465) T KOG2268 173 PVPKPID--HNRHCVVMELVDGYPLRQVRHVE----DPPTLYDDLMGLIVR-LANHGLIHGDFNEFNIMVKDDDKIVVID 245 (465) T ss_pred CCCCCCC--CCCEEEHHHHHCCCCEEEEEECC----CHHHHHHHHHHHHHH-HHHCCCEECCCCHHEEEEECCCCEEEEE T ss_conf 9997545--65312188764455300011147----868999999999999-9875933225305416871489779963 Q ss_pred CCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHH Q ss_conf 40312169899999997669997187278999999 Q gi|254780623|r 306 MGITGRLSKRERRFLAEILYGFISRDYQRVADVHF 340 (517) Q Consensus 306 fG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~ 340 (517) |-.|-..+-...+.+. ++|.+-+.+.+. T Consensus 246 FPQmvS~sh~nA~~YF-------dRDv~Ci~~fFr 273 (465) T KOG2268 246 FPQMVSTSHPNAEYYF-------DRDVECIRAFFR 273 (465) T ss_pred CHHHHCCCCCCCCEEE-------CCCHHHHHHHHH T ss_conf 4575046788631000-------144899999999 No 299 >cd05037 PTK_Jak_rpt1 Pseudokinase (Repeat 1) Domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki Probab=98.17 E-value=9.2e-06 Score=63.84 Aligned_cols=148 Identities=11% Similarity=0.113 Sum_probs=81.7 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) |.|++|+-|.||+|+++.. |..+++|..+ .++ ...+.... .-..+.. T Consensus 1 E~iG~G~FG~Vykg~~r~~--~~~~~~~~~~---------------~~~-v~~k~~~~---------------~~~~~~~ 47 (259) T cd05037 1 EHLGQGTFTNIYKGVLRVQ--SDLDGVSPGK---------------DIS-VVLKVLDQ---------------SHRDSLA 47 (259) T ss_pred CCCCCCCCCEEEEEEECCC--CCCCCCCCCE---------------EEE-EEEEECCC---------------CCHHHHH T ss_conf 9754898878998998689--8521000341---------------578-99984486---------------7328999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHC Q ss_conf 5999988987202446776643000010221783353002478632426773320022---5689999999999989744 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHD---LERLSVTLVQSFLLHTLRD 281 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d---~~~la~~l~~~~~~qi~~~ 281 (517) |.+|++-+.+++.-+ -|.+=.++ ...+.+|||||++|-++.+.-.-.....+ +-.++..++.+ +.-+-.. T Consensus 48 f~~e~~~l~~l~Hpn----Iv~l~g~~--~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~~~i~~~ia~g-l~yLH~~ 120 (259) T cd05037 48 FFETASLMSQLSHKH----LVKLYGVC--VRDENIMVEEYVKFGPLDVFLHREKNNVTLHWKLDVAKQLASA-LHYLEDK 120 (259) T ss_pred HHHHHHHHHHCCCCC----CCEEEEEE--EECCCEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHHHC T ss_conf 999999998689978----77098999--9899889998389988999884258999999999999999999-9999729 Q ss_pred CEECCCCCCCEEEEECCCC-------EEEEECCHHEEC Q ss_conf 8661787862289802895-------357434031216 Q gi|254780623|r 282 GFFHADLHPGNLFVDSKGY-------IVAVDMGITGRL 312 (517) Q Consensus 282 GfFHaDPHpGNi~v~~dg~-------i~~lDfG~vg~l 312 (517) |+.|.|..|.||+++.++. +-+-|||..... T Consensus 121 ~iiHrDlK~~NILl~~~~~~~~~~~~~kl~Dfg~~~~~ 158 (259) T cd05037 121 KLVHGNVCGKNILLAREGLNEGCVPFIKLSDPGIPITV 158 (259) T ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCEEECCCCCCCCC T ss_conf 95167765114897057876554541474357755304 No 300 >cd05077 PTK_Jak1_rpt1 Pseudokinase (Repeat 1) Domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom Probab=98.15 E-value=9.1e-06 Score=63.88 Aligned_cols=139 Identities=11% Similarity=0.164 Sum_probs=81.0 Q ss_pred HHHHHHHHHHHHHHHEECCCCCC----------EEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH Q ss_conf 66677888865555021288872----------36876403104688777788999875321146854334691799999 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYR----------KVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRA 194 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~----------~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e 194 (517) |+|+.|+-|+||+|+++..+... +||||+..++- T Consensus 1 e~lG~G~fG~VykG~~~~~~~~~~~~~~~~~~v~VaiK~~~~~~------------------------------------ 44 (262) T cd05077 1 EHLGRGTRTNIYSGTLNYKSDDDEDGYSYEKEIKVVLKVLDPSH------------------------------------ 44 (262) T ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCC------------------------------------ T ss_conf 98876899779717970788643334455237899998679755------------------------------------ Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCC---HHHHHHHH Q ss_conf 9988788865599998898720244677664-3000010221783353002478632426773320022---56899999 Q gi|254780623|r 195 LEQVTKMEMDLRLEAAAFSEMAENTVKDQGF-RVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHD---LERLSVTL 270 (517) Q Consensus 195 ~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v-~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d---~~~la~~l 270 (517) ...+.+|.+|+.-+.+++. |.| ..=.+.. -.....|||||++|-++.+.-.......+ +-++|..+ T Consensus 45 ----~~~~~~f~~Ev~il~~l~H-----pNIV~l~G~~~-~~~~~~lV~Ey~~~GsL~~~l~~~~~~l~~~~~~~ia~~i 114 (262) T cd05077 45 ----RDISLAFFETASMMRQVSH-----KHIVLLYGVCV-RDQENIMVEEFVQFGPLDLFMHRKSDPLTTPWKFQVAKQL 114 (262) T ss_pred ----CHHHHHHHHHHHHHHHCCC-----CCCCCEEEEEE-ECCEEEEEEECCCCCCHHHHHHCCCCCCCHHHHHHHHHHH T ss_conf ----0689999999999983899-----79872999999-8999899877999896999984189989999999999999 Q ss_pred HHHHHHHHHHCCEECCCCCCCEEEEECCCC-------EEEEECCHHE Q ss_conf 999999897448661787862289802895-------3574340312 Q gi|254780623|r 271 VQSFLLHTLRDGFFHADLHPGNLFVDSKGY-------IVAVDMGITG 310 (517) Q Consensus 271 ~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~-------i~~lDfG~vg 310 (517) +.+. .-+-..++.|.|.-|.|+++..+|. +-+-|||+.. T Consensus 115 a~gl-~yLH~~~iiHrDlk~~NiLl~~~~~~~~~~~~~KlsDfG~~~ 160 (262) T cd05077 115 ASAL-SYLEDKDLVHGNVCTKNILLAREGIDTEGGPFIKLSDPGIPI 160 (262) T ss_pred HHHH-HHHHHCCCCCCCCCHHHEEEECCCCCCCCCCCEEECCCCCCC T ss_conf 9999-999839943774343007882345555457736961588873 No 301 >KOG0595 consensus Probab=98.15 E-value=3.2e-06 Score=67.41 Aligned_cols=138 Identities=22% Similarity=0.290 Sum_probs=86.3 Q ss_pred HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 66778888655550212888723687640310468877778899987532114685433469179999999887888655 Q gi|254780623|r 126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL 205 (517) Q Consensus 126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~ 205 (517) -|+++|-|-||+|+.++ +|.+||||=..-. ++.+ +....+..|+-. T Consensus 17 ~iG~GsfavVykg~h~~--~~~~VAIK~i~~~--------------------~l~~------------k~~e~L~~Ei~i 62 (429) T KOG0595 17 EIGSGSFAVVYKGRHKK--SGTEVAIKCIAKK--------------------KLNK------------KLVELLLSEIKI 62 (429) T ss_pred HCCCCCEEEEEEEEECC--CCCEEEEEEEHHH--------------------CCCH------------HHHHHHHHHHHH T ss_conf 20676127999867615--7846875400242--------------------0279------------999999999999 Q ss_pred HHHHH--HHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH------ Q ss_conf 99998--8987202446776643000010221783353002478632426773320022568999999999998------ Q gi|254780623|r 206 RLEAA--AFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH------ 277 (517) Q Consensus 206 ~~Ea~--n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q------ 277 (517) ..|.+ |.-++-+.... .+.=.|||||++|--+++. +... ..+-+..++.|+.| T Consensus 63 Lkel~H~nIV~l~d~~~~-------------~~~i~lVMEyC~gGDLs~y--i~~~----~~l~e~t~r~Fm~QLA~alq 123 (429) T KOG0595 63 LKELKHPNIVRLLDCIED-------------DDFIYLVMEYCNGGDLSDY--IRRR----GRLPEATARHFMQQLASALQ 123 (429) T ss_pred HHHCCCCCEEEEEEEEEC-------------CCEEEEEEEECCCCCHHHH--HHHC----CCCCHHHHHHHHHHHHHHHH T ss_conf 985588555357788864-------------9869999875788888999--9872----78988999999999999999 Q ss_pred -HHHCCEECCCCCCCEEEEECC------CCEEEEECCHHEECCHHH Q ss_conf -974486617878622898028------953574340312169899 Q gi|254780623|r 278 -TLRDGFFHADLHPGNLFVDSK------GYIVAVDMGITGRLSKRE 316 (517) Q Consensus 278 -i~~~GfFHaDPHpGNi~v~~d------g~i~~lDfG~vg~l~~~~ 316 (517) +-..++.|=|.-|-||+++.+ ..+=+-|||....|++.. T Consensus 124 ~L~~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~~ 169 (429) T KOG0595 124 FLHENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPGS 169 (429) T ss_pred HHHHCCEEECCCCCCEEEECCCCCCCCCCEEEECCCCHHHHCCCHH T ss_conf 9987790104678543771367777777557860443121178616 No 302 >cd05150 APH Aminoglycoside 3'-phosphotransferase (APH). The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio Probab=98.13 E-value=0.00013 Score=54.79 Aligned_cols=77 Identities=16% Similarity=0.196 Sum_probs=50.2 Q ss_pred CEECCCCCCCEEEEECCCCE-EEEECCHHEECCHHHHHHHHHHHHHHHCCC-HHHHHHHHHH-HHCCCCCCCHHHHHHHH Q ss_conf 86617878622898028953-574340312169899999997669997187-2789999998-41266778936899999 Q gi|254780623|r 282 GFFHADLHPGNLFVDSKGYI-VAVDMGITGRLSKRERRFLAEILYGFISRD-YQRVADVHFE-AGYVPRHHNRFSFAQAI 358 (517) Q Consensus 282 GfFHaDPHpGNi~v~~dg~i-~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D-~~~~~~~l~~-lg~~~~~~d~~~~~~~i 358 (517) -+-|||++++|+++++ |++ ++||||..|.=|+..=-++ ....+..+- .+...+.+.+ -|...++.++-.|++-+ T Consensus 164 v~~HGD~~~~N~l~~~-~~~~g~iD~~~~g~aDr~~DLa~--~~~sl~~n~~~~~~~~~Fl~~YG~~~~D~~rl~~y~lL 240 (244) T cd05150 164 VVTHGDACLPNIIVDP-GKFSGFIDLGRLGVADRYQDLAL--AVRSLRENLGGEEYAARFLDRYGIDAPDPEKLAYYRLL 240 (244) T ss_pred EEECCCCCCCCEEEEC-CEEEEEEECCCCCCCCHHHHHHH--HHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHH T ss_conf 7877888888889858-91899997666677777999999--99677530698389999999809998998999999988 Q ss_pred HHH Q ss_conf 985 Q gi|254780623|r 359 RAI 361 (517) Q Consensus 359 ~~~ 361 (517) .++ T Consensus 241 DEf 243 (244) T cd05150 241 DEF 243 (244) T ss_pred HHH T ss_conf 743 No 303 >cd05151 ChoK Choline Kinase (ChoK). The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph Probab=98.11 E-value=8.3e-06 Score=64.15 Aligned_cols=105 Identities=24% Similarity=0.274 Sum_probs=70.2 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 65599998898720244677664300001022178335300247863242677332002256899999999999897448 Q gi|254780623|r 203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDG 282 (517) Q Consensus 203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~G 282 (517) +|-.+|..+++..++. .+ .|+++.--....++++||++|.+++..+..... ...++|+.+-+.--..+.... T Consensus 37 idR~~E~~~~~~~~~~-----gl-~P~~~~~d~~~g~~i~e~i~g~~~~~~~~~~~~--~~~~la~~l~~lH~~~~~~~v 108 (170) T cd05151 37 INRENEAENSKLAAEA-----GI-GPKLYYFDPETGVLITEFIEGSELLTEDFSDPE--NLEKIAKLLKKLHSSPLPDLV 108 (170) T ss_pred CCHHHHHHHHHHHHHC-----CC-CCEEEEEECCCCEEEEEEECCCCCCCHHHCCHH--HHHHHHHHHHHHHCCCCCCCE T ss_conf 0899999999999974-----99-982799966899699997668505821208999--999999999998579999966 Q ss_pred EECCCCCCCEEEEECCCCEEEEECCHHEECCHHH Q ss_conf 6617878622898028953574340312169899 Q gi|254780623|r 283 FFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRE 316 (517) Q Consensus 283 fFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~ 316 (517) +-|.|+|||||+++ ++++.+|||--.|-=++.. T Consensus 109 ~cHnDl~~~Nil~~-~~~~~lIDwEYa~~~dp~f 141 (170) T cd05151 109 PCHNDLLPGNFLLD-DGRLWLIDWEYAGMNDPLF 141 (170) T ss_pred ECCCCCCCCCEEEE-CCEEEEEEHHHCCCCCHHH T ss_conf 02688980219988-9908998401256788799 No 304 >KOG0605 consensus Probab=98.07 E-value=7.7e-06 Score=64.44 Aligned_cols=149 Identities=23% Similarity=0.314 Sum_probs=94.7 Q ss_pred HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 9867--66677888865555021288872368764031046887777889998753211468543346917999999988 Q gi|254780623|r 121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV 198 (517) Q Consensus 121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 198 (517) ..|+ .+|+-|--|+|+-|+-+| +|+-.|.|+.+- .++--... ... T Consensus 141 ~DFe~Lk~IgkGAfGeVrLarKk~--Tg~iyAmK~LkK-------S~M~~~~Q------------------------v~h 187 (550) T KOG0605 141 DDFELLKVIGKGAFGEVRLARKKD--TGEIYAMKILKK-------SEMLKKNQ------------------------VEH 187 (550) T ss_pred CCCHHHEEECCCCCEEEEEEEECC--CCCEEEEECCCH-------HHHHHHHH------------------------HHH T ss_conf 111333034466530689999726--786786410027-------77776431------------------------777 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHH-HHHCCC-----HHHHHHHH Q ss_conf 7888655999988987202446776643000010221783--353002478632426773-320022-----56899999 Q gi|254780623|r 199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKL-RACGHD-----LERLSVTL 270 (517) Q Consensus 199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l-~~~~~d-----~~~la~~l 270 (517) ++.|-|...| .++++| =+.|-.+-.+. -|+|||++|- |...| ...+.- +--+|+.. T Consensus 188 V~aERdiL~~-----------~ds~~v--VKLyYsFQD~~~LYLiMEylPGG---D~mTLL~~~~~L~e~~arfYiaE~v 251 (550) T KOG0605 188 VRAERDILAE-----------VDSPWV--VKLYYSFQDKEYLYLIMEYLPGG---DMMTLLMRKDTLTEDWARFYIAETV 251 (550) T ss_pred HHHHHHHHHH-----------CCCCCE--EEEEEEECCCCEEEEEEEECCCC---CHHHHHHHCCCCCHHHHHHHHHHHH T ss_conf 8889887640-----------477767--88888850787059999713784---3999987358674478999999999 Q ss_pred HHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHH Q ss_conf 99999989744866178786228980289535743403121698999999 Q gi|254780623|r 271 VQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFL 320 (517) Q Consensus 271 ~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l 320 (517) + -..-|-.+|+.|-|.-|-|++++..|.|=+-|||.+.-+....+..+ T Consensus 252 l--AI~~iH~~gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~~~~~~~~ 299 (550) T KOG0605 252 L--AIESIHQLGYIHRDIKPDNLLIDAKGHIKLSDFGLSTGLDKKHRIES 299 (550) T ss_pred H--HHHHHHHCCCCCCCCCHHHEEECCCCCEEECCCCCCCHHHHHHHHHH T ss_conf 9--99999875851256774444565779776001346613343103443 No 305 >KOG0667 consensus Probab=98.01 E-value=1.1e-05 Score=63.33 Aligned_cols=178 Identities=21% Similarity=0.300 Sum_probs=90.6 Q ss_pred HHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHH--HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 766677888865555021288872368764031046--887777889998753211468543346917999999988788 Q gi|254780623|r 124 DDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVR--KRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKM 201 (517) Q Consensus 124 dePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~--~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 201 (517) +|.|+.||-|||-+|.=+. +|+.|||||.+-.-. .+-...+++|..+ .+.-|. T Consensus 191 ~e~LGkGtFGQVvk~~d~~--T~e~VAIKIiKN~k~f~~Q~~~Ei~iL~~l----n~~d~~------------------- 245 (586) T KOG0667 191 LEVLGKGSFGQVVKAYDHK--TGEIVAIKIIKNKKRFLRQAQIEIRILELL----NKHDPD------------------- 245 (586) T ss_pred EEEECCCCCCEEEEEEECC--CCCEEEEEEECCCHHHHHHHHHHHHHHHHH----HCCCCC------------------- T ss_conf 9875353340369988668--883899986005867888999999999997----452887------------------- Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHH---HCCCH---HHHHHHHHHH Q ss_conf 865599998898720244677664300001022178--335300247863242677332---00225---6899999999 Q gi|254780623|r 202 EMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRA---CGHDL---ERLSVTLVQS 273 (517) Q Consensus 202 ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~---~~~d~---~~la~~l~~~ 273 (517) ....|=+.|+-+--+ -+||-|-.+ ..+-+. ++. .|... +.++..++.+ T Consensus 246 ---------------------~~~n~Vrm~d~F~fr~HlciVfELL~-~NLYel--lK~n~f~Glsl~~ir~~~~Qil~~ 301 (586) T KOG0667 246 ---------------------DKYNIVRMLDYFYFRNHLCIVFELLS-TNLYEL--LKNNKFRGLSLPLVRKFAQQILTA 301 (586) T ss_pred ---------------------CCCCEEEEEEECCCCCCEEEEEHHHH-HHHHHH--HHHCCCCCCCHHHHHHHHHHHHHH T ss_conf ---------------------77106986640110562255303446-469999--973588888889999999999999 Q ss_pred HHHHHHHCCEECCCCCCCEEEEECC--CCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCH Q ss_conf 9998974486617878622898028--95357434031216989999999766999718727899999984126677893 Q gi|254780623|r 274 FLLHTLRDGFFHADLHPGNLFVDSK--GYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNR 351 (517) Q Consensus 274 ~~~qi~~~GfFHaDPHpGNi~v~~d--g~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~ 351 (517) . ..+-+.|..|||+-|-|||+-.- .+|=+||||.....++..-. .+++ -+.++-|.++.+-+ ...+|. T Consensus 302 L-~~L~~l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~q~vyt----YiQS----RfYRAPEVILGlpY-~~~IDm 371 (586) T KOG0667 302 L-LFLHELGIIHCDLKPENILLKDPKRSRIKVIDFGSSCFESQRVYT----YIQS----RFYRAPEVILGLPY-DTAIDM 371 (586) T ss_pred H-HHHHHCCEEECCCCHHHEEECCCCCCCEEEEECCCCCCCCCCCEE----EEEC----CCCCCCHHHCCCCC-CCCCCE T ss_conf 9-999867962425875765641677676169844531114775224----3312----02466453106876-872123 Q ss_pred HHHHHHHHH Q ss_conf 689999998 Q gi|254780623|r 352 FSFAQAIRA 360 (517) Q Consensus 352 ~~~~~~i~~ 360 (517) =.|---+.+ T Consensus 372 WSLGCIlAE 380 (586) T KOG0667 372 WSLGCILAE 380 (586) T ss_pred EEHHHHHHH T ss_conf 304346776 No 306 >KOG0660 consensus Probab=97.97 E-value=1.5e-05 Score=62.13 Aligned_cols=181 Identities=20% Similarity=0.284 Sum_probs=113.7 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +|++.++-|.|-.|+-+. +|+.|||| .|.+.++.-+ ..+...+|+- T Consensus 28 ~~iG~GAyGvVcsA~~~~--t~~~VAIK----Ki~~~F~~~~----------------------------~akRtlRElk 73 (359) T KOG0660 28 EPIGRGAYGVVCSAKDKR--TGEKVAIK----KILNPFENQI----------------------------DAKRTLRELK 73 (359) T ss_pred CCCCCCCEEEEEEEEECC--CCCEEEHH----HHHHHHHCHH----------------------------HHHHHHHHHH T ss_conf 103577332277778868--99774042----3025553668----------------------------8999999999 Q ss_pred HHHHHHHHHHHH-CCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH--- Q ss_conf 599998898720-2446776643000010221783353002478632426773320022568999999999998974--- Q gi|254780623|r 205 LRLEAAAFSEMA-ENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLR--- 280 (517) Q Consensus 205 ~~~Ea~n~~~~~-~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~--- 280 (517) +. ++|+ +|.-...+|..|....++ ..=-+|+|+++ +|+..+-..+ +.+.+.-+..|+.|++. T Consensus 74 lL------r~~~HeNIi~l~di~~p~~~~~f-~DvYiV~elMe----tDL~~iik~~---~~L~d~H~q~f~YQiLrgLK 139 (359) T KOG0660 74 LL------RHLRHENIIGLLDIFRPPSRDKF-NDVYLVFELME----TDLHQIIKSQ---QDLTDDHAQYFLYQILRGLK 139 (359) T ss_pred HH------HHHCCCCCCEEEEECCCCCCCCC-CEEEEEHHHHH----HHHHHHHHCC---CCCCHHHHHHHHHHHHHHCC T ss_conf 99------97068881337761157644456-51687550776----5899998708---55228999999999998331 Q ss_pred ----CCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHH Q ss_conf ----4866178786228980289535743403121698999999976699971872789999998412667789368999 Q gi|254780623|r 281 ----DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQ 356 (517) Q Consensus 281 ----~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~ 356 (517) -|.+|-|.-|+|+++..+..+.+.|||+...+++. .-...+..-+.--..++-+.++.+...+..+|.=..-- T Consensus 140 yiHSAnViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~~---~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGC 216 (359) T KOG0660 140 YIHSANVIHRDLKPSNLLLNADCDLKICDFGLARYLDKF---FEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGC 216 (359) T ss_pred HHHCCCCCCCCCCHHHEEECCCCCEEECCCCCEEECCCC---CCCCCHHCCEEEEEECCHHHHHCCCCCCCHHHHHHHHH T ss_conf 331166034556644525526788785366531322666---76320113234444127788734132451011354658 No 307 >PTZ00284 protein kinase; Provisional Probab=97.96 E-value=3.8e-05 Score=59.04 Aligned_cols=180 Identities=17% Similarity=0.169 Sum_probs=93.3 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECC--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031--0468877778899987532114685433469179999999887888 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRP--GVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME 202 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP--~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E 202 (517) +-|+.||-|||++|.=+. +|+.|||||.|- .-.+.-..++.+|+.+. ..-|.. T Consensus 135 ~~LG~GtFG~V~kc~D~k--t~~~VAIKIIRn~~~y~~qA~~EI~IL~~L~----~~D~~~------------------- 189 (467) T PTZ00284 135 SLLGEGTFGKVVEAWDRK--RKEYCAVKIVRNVPKYTRDAKIEIQFMEKVR----QADPAD------------------- 189 (467) T ss_pred EEEEECCCEEEEEEEECC--CCCEEEEEEECCCHHHHHHHHHHHHHHHHHH----HCCCCC------------------- T ss_conf 468423272999999999--9959999997285789999999999999997----449767------------------- Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHH-CCCHHHH---HHHHHHHHHHHH Q ss_conf 655999988987202446776643000010221783353002478632426773320-0225689---999999999989 Q gi|254780623|r 203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRAC-GHDLERL---SVTLVQSFLLHT 278 (517) Q Consensus 203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~-~~d~~~l---a~~l~~~~~~qi 278 (517) ...-|+.=..+...++.-+||+|.. |..+-|. +... +.....+ +..++.+. .-+ T Consensus 190 ------------------~~~iVrl~d~F~~~~gHlCIVFElL-G~nLyd~--Lkk~~pf~~~~i~~i~~Qll~aL-~yL 247 (467) T PTZ00284 190 ------------------RFPLMKIQRYFQNETGHMCIVMPKY-GPCLLDW--IMKHGPFSHRHLAQIIFQTGVAL-DYF 247 (467) T ss_pred ------------------CCCEEEEEHEEECCCCEEEEEECCC-CHHHHHH--HHHCCCCCHHHHHHHHHHHHHHH-HHH T ss_conf ------------------7466872100515997799998345-6759999--99709997789999999999999-998 Q ss_pred HHC-CEECCCCCCCEEEEECCC----------------CEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 744-866178786228980289----------------535743403121698999999976699971872789999998 Q gi|254780623|r 279 LRD-GFFHADLHPGNLFVDSKG----------------YIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFE 341 (517) Q Consensus 279 ~~~-GfFHaDPHpGNi~v~~dg----------------~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~ 341 (517) -.+ |..|+|.-|-||++...+ +|-++|||....-+... ...+.--..+.-|.++. T Consensus 248 H~~~~IIHtDLKPENILL~~~~~~~d~~~~~~~~~~~~~IKlIDFGSAc~~~~~~--------~tyi~Tr~YRaPEvilg 319 (467) T PTZ00284 248 HTELHLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLGGCCDERHSR--------TAIVSTRHYRSPEVVLG 319 (467) T ss_pred HHCCCEEECCCCHHHEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC--------CEEECCCCCCCHHEEEC T ss_conf 5537977423899993125677544532234578987637994357666677784--------40223655578211765 Q ss_pred HHCCCCCCCHHHHHHHHHH Q ss_conf 4126677893689999998 Q gi|254780623|r 342 AGYVPRHHNRFSFAQAIRA 360 (517) Q Consensus 342 lg~~~~~~d~~~~~~~i~~ 360 (517) +++. ..+|.=.+---+.+ T Consensus 320 ~~y~-~~~DiWS~gCi~~E 337 (467) T PTZ00284 320 LGWM-YSTDMWSMGCIIYE 337 (467) T ss_pred CCCC-CCHHHHHHHHHHHH T ss_conf 8988-70788888899999 No 308 >cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins. This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain Probab=97.95 E-value=6.1e-05 Score=57.47 Aligned_cols=144 Identities=18% Similarity=0.232 Sum_probs=78.0 Q ss_pred HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 66778888655550212888723687640310468877778899987532114685433469179999999887888655 Q gi|254780623|r 126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL 205 (517) Q Consensus 126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~ 205 (517) ++..+.--++|+-++.+ |+++|+|.+-|+... + ...|. T Consensus 5 ~l~gG~sn~t~~v~~~~---~~~~VlR~~p~~~~~--------------------~-------------------~~~~~ 42 (223) T cd05154 5 QLSGGQSNLTYLLTAGG---GRRLVLRRPPPGALL--------------------P-------------------SAHDV 42 (223) T ss_pred ECCCCCCCCEEEEEECC---CCEEEEECCCCCCCC--------------------C-------------------CCCCH T ss_conf 76997655569999799---968999718988888--------------------6-------------------63037 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC-----EEEEECCCCCCCCHH----------------------HHHHH Q ss_conf 999988987202446776643000010221783-----353002478632426----------------------77332 Q gi|254780623|r 206 RLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD-----VITMEWIDGVKISDT----------------------EKLRA 258 (517) Q Consensus 206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~-----VLvmE~i~G~~i~d~----------------------~~l~~ 258 (517) .+|++-++..++ ..+-+|+|+.--+... -++|||++|.++++. ..++. T Consensus 43 ~rE~~vl~~L~~-----~~vPvP~v~~~~~~~~~~G~pf~vm~~i~G~~~~~~~~~~~~~~~~r~~l~~~~~~~La~lH~ 117 (223) T cd05154 43 AREYRVLRALAG-----TGVPVPKVLALCEDPSVLGTPFYVMERVDGRVLRDRLLRPELSPEERRALARALADTLAALHS 117 (223) T ss_pred HHHHHHHHHHHC-----CCCCCCEEEEECCCCCCCCCCEEEEEEECCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC T ss_conf 999999998656-----699976189982688747875699973265524876666679999999999999999999846 Q ss_pred HC-----CC----HHHHHHHHHHHH--------------HHHHH-----------HCCEECCCCCCCEEEEECC-CCE-E Q ss_conf 00-----22----568999999999--------------99897-----------4486617878622898028-953-5 Q gi|254780623|r 259 CG-----HD----LERLSVTLVQSF--------------LLHTL-----------RDGFFHADLHPGNLFVDSK-GYI-V 302 (517) Q Consensus 259 ~~-----~d----~~~la~~l~~~~--------------~~qi~-----------~~GfFHaDPHpGNi~v~~d-g~i-~ 302 (517) .. .. ...-.+..+..+ +.++. .-.+.|+|.|||||+++++ |+| + T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~~~~~L~HgD~~~~Nilv~~~~~~i~g 197 (223) T cd05154 118 VDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPAMERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVA 197 (223) T ss_pred CCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEECCCCCEEE T ss_conf 89767685325789857999999999999874267873799999998855777688505627888870899389994899 Q ss_pred EEECCHHEECCHHH Q ss_conf 74340312169899 Q gi|254780623|r 303 AVDMGITGRLSKRE 316 (517) Q Consensus 303 ~lDfG~vg~l~~~~ 316 (517) +|||-+++-=+|.. T Consensus 198 VlDWE~a~~GdP~~ 211 (223) T cd05154 198 VLDWELATLGDPLA 211 (223) T ss_pred EEECCCCCCCCHHH T ss_conf 98231256288499 No 309 >KOG4250 consensus Probab=97.95 E-value=2.3e-06 Score=68.46 Aligned_cols=149 Identities=23% Similarity=0.343 Sum_probs=90.1 Q ss_pred HHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHH----HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 76667788886555502128887236876403104----68877778899987532114685433469179999999887 Q gi|254780623|r 124 DDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGV----RKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT 199 (517) Q Consensus 124 dePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i----~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 199 (517) ++-+|-|--|+||+++=+. +|+.||||+-++-- .++.-..+.+|+.+ +.+.+|.-| T Consensus 18 ~e~LG~Ga~g~V~rgrnke--tG~~vAvK~~~~~~~~r~~e~~~~EieilkKL--------------nh~NIVk~f---- 77 (732) T KOG4250 18 DERLGKGAFGNVYRGRNKE--TGRLVAVKTFNKESSLRPRERWCREIEILKKL--------------NHPNIVKLF---- 77 (732) T ss_pred HHHHCCCCCCEEEEECCCC--CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHC--------------CCHHHHHHC---- T ss_conf 3132477540146511256--56120387640212666299999999999970--------------742143300---- Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHH--HHHHCCCHHHHHHHHHH--HHH Q ss_conf 88865599998898720244677664300001022178335300247863242677--33200225689999999--999 Q gi|254780623|r 200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEK--LRACGHDLERLSVTLVQ--SFL 275 (517) Q Consensus 200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~--l~~~~~d~~~la~~l~~--~~~ 275 (517) +.+.=..| +. -+...||+|||+.|-++...-. -.+.|..-.++-..+.+ +-+ T Consensus 78 ---------------------~iee~~~~--~~-~~~~~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al 133 (732) T KOG4250 78 ---------------------DIEETKFL--GL-VTRLPVLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSAL 133 (732) T ss_pred ---------------------CCCCCCCC--CC-CCCCCEEEEEECCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf ---------------------66776555--74-6666468886067876998864921136997899999999999999 Q ss_pred HHHHHCCEECCCCCCCEEEEE--CCCCEE--EEECCHHEECCHHH Q ss_conf 989744866178786228980--289535--74340312169899 Q gi|254780623|r 276 LHTLRDGFFHADLHPGNLFVD--SKGYIV--AVDMGITGRLSKRE 316 (517) Q Consensus 276 ~qi~~~GfFHaDPHpGNi~v~--~dg~i~--~lDfG~vg~l~~~~ 316 (517) +-+=++|..|-|.-||||+.. .||+.+ +.|||....++++. T Consensus 134 ~~LrEn~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d~s 178 (732) T KOG4250 134 RHLRENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELDDNS 178 (732) T ss_pred HHHHHCCCEECCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCC T ss_conf 999876921046887707886368872477641354434688887 No 310 >KOG0193 consensus Probab=97.94 E-value=1.3e-05 Score=62.75 Aligned_cols=146 Identities=17% Similarity=0.247 Sum_probs=93.5 Q ss_pred CCHHHHHHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH Q ss_conf 88999999867--6667788886555502128887236876403104688777788999875321146854334691799 Q gi|254780623|r 114 APIEELYCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAV 191 (517) Q Consensus 114 ~~~~~~F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~ 191 (517) ..|+..+.++. ++|++||.|-||||..| | +||||+..= + .|. ++- T Consensus 385 ~~WeIp~~ev~l~~rIGsGsFGtV~Rg~wh----G-dVAVK~Lnv--------------------~--~pt------~~q 431 (678) T KOG0193 385 EEWEIPPEEVLLGERIGSGSFGTVYRGRWH----G-DVAVKLLNV--------------------D--DPT------PEQ 431 (678) T ss_pred CCCCCCHHHHHCCCEECCCCCCCEEECCCC----C-CEEEEEEEC--------------------C--CCC------HHH T ss_conf 121468778510340046654115641040----4-237999815--------------------7--899------999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHH---H Q ss_conf 9999988788865599998898720244677664300001022178--3353002478632426773320022568---9 Q gi|254780623|r 192 VRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLER---L 266 (517) Q Consensus 192 ~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~---l 266 (517) ++ -|.+|..|+++-|...- + .|..||++ -.+|..|++|-++-..-...+...|+.+ + T Consensus 432 lq----------aFKnEVa~lkkTRH~NI----l----LFMG~~~~p~~AIiTqwCeGsSLY~hlHv~etkfdm~~~idI 493 (678) T KOG0193 432 LQ----------AFKNEVAVLKKTRHENI----L----LFMGACMNPPLAIITQWCEGSSLYTHLHVQETKFDMNTTIDI 493 (678) T ss_pred HH----------HHHHHHHHHHHCCHHHH----E----EEEHHHCCCCEEEEEHHCCCCHHHHHCCCHHHHHHHHHHHHH T ss_conf 99----------99999998752121120----1----111211488604422022674055410003566648999999 Q ss_pred HHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 999999999989744866178786228980289535743403121 Q gi|254780623|r 267 SVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 267 a~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) |+...... .=+--.+..|-|.---|||+.+|+++++-|||+.+. T Consensus 494 AqQiaqGM-~YLHAK~IIHrDLKSnNIFl~~~~kVkIgDFGLatv 537 (678) T KOG0193 494 AQQIAQGM-DYLHAKNIIHRDLKSNNIFLHEDLKVKIGDFGLATV 537 (678) T ss_pred HHHHHHHH-HHHHHHHHHHHHCCCCCEEECCCCCEEEECCCCEEE T ss_conf 99998765-056553144311022646870588489831320454 No 311 >KOG0600 consensus Probab=97.93 E-value=2.1e-05 Score=61.08 Aligned_cols=154 Identities=18% Similarity=0.306 Sum_probs=98.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 47889999998676667788886555502128887236876403-----1046887777889998753211468543346 Q gi|254780623|r 112 LKAPIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIR-----PGVRKRFFRDIQVMYLIARIQEKLLPSMRRL 186 (517) Q Consensus 112 lg~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~r-----P~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~ 186 (517) ++..-.+.|..+ +-|+-+.-||||+|+=.+ +|+-||.|=.| ||-...+.+++.+|+.+- .| T Consensus 111 w~~r~~~~feki-~kIGeGTyg~VYkAr~~~--tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~------Hp----- 176 (560) T KOG0600 111 WGPRRADSFEKI-EKIGEGTYGQVYKARDLE--TGKIVALKKVRFDNEKEGFPITAIREIKILRRLD------HP----- 176 (560) T ss_pred CCCCCHHHHHHH-HHHCCCCHHHEEEEEECC--CCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCC------CC----- T ss_conf 441426888988-876476302325702336--6867898876404577765177899999998538------98----- Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHH-CCCHHH Q ss_conf 9179999999887888655999988987202446776643000010221783353002478632426773320-022568 Q gi|254780623|r 187 CFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRAC-GHDLER 265 (517) Q Consensus 187 ~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~-~~d~~~ 265 (517) |.-.-..+++ ..+++.=-||.||++- |+..+-.. ++ + T Consensus 177 -------------------------------NIikL~eivt----~~~~~siYlVFeYMdh----DL~GLl~~p~v---k 214 (560) T KOG0600 177 -------------------------------NIIKLEEIVT----SKLSGSIYLVFEYMDH----DLSGLLSSPGV---K 214 (560) T ss_pred -------------------------------CCCCEEEEEE----ECCCCEEEEEEECCCC----HHHHHHCCCCC---C T ss_conf -------------------------------6111114788----3378518998733563----25554307886---6 Q ss_pred HHHHHHHHHHHHHH-------HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHH Q ss_conf 99999999999897-------448661787862289802895357434031216989999999 Q gi|254780623|r 266 LSVTLVQSFLLHTL-------RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLA 321 (517) Q Consensus 266 la~~l~~~~~~qi~-------~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~ 321 (517) +.+-=+.+|++|++ ..|+.|-|--.-||+++.+|.+-+-|||+....++.....+. T Consensus 215 ft~~qIKc~mkQLl~Gl~~cH~~gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~~~~~T 277 (560) T KOG0600 215 FTEPQIKCYMKQLLEGLEYCHSRGVLHRDIKGSNILIDNNGVLKIADFGLARFYTPSGSAPYT 277 (560) T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCEEECCCCCEEECCCCCEEECCCCCCCCCC T ss_conf 670789999999999987776458310346502067858897776244432211577776666 No 312 >cd05076 PTK_Tyk2_rpt1 Pseudokinase (Repeat 1) Domain of the Protein Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt Probab=97.92 E-value=4.5e-06 Score=66.24 Aligned_cols=155 Identities=10% Similarity=0.111 Sum_probs=81.2 Q ss_pred HHHHHHHHHHHHHEECCCCCCEEEEEEECCH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 6778888655550212888723687640310-468877778899987532114685433469179999999887888655 Q gi|254780623|r 127 IAAASIAQVHPAVVHDINGYRKVAVKIIRPG-VRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL 205 (517) Q Consensus 127 lasASiaQVh~A~l~d~~~g~~VaVKV~rP~-i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~ 205 (517) |+.|+.|+||+|+|+..+ |..+++++.-.. ....-..+-+-++-+.+.++ +. .-....+| T Consensus 3 lG~G~fG~VYkG~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~v~~k~l~---~~---------------~~~~~~~F 63 (274) T cd05076 3 LGQGTRTNIYDGRLRVEG-GGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLD---PS---------------HRDIALAF 63 (274) T ss_pred CCCCCCCEEEEEEEECCC-CCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECC---CC---------------CCHHHHHH T ss_conf 885798248999980688-765310011111000012345714558999728---64---------------43469999 Q ss_pred HHHHHHHHHHHCCCCCCCC-CCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCC---HHHHHHHHHH--HHHHHHH Q ss_conf 9999889872024467766-43000010221783353002478632426773320022---5689999999--9999897 Q gi|254780623|r 206 RLEAAAFSEMAENTVKDQG-FRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHD---LERLSVTLVQ--SFLLHTL 279 (517) Q Consensus 206 ~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d---~~~la~~l~~--~~~~qi~ 279 (517) .+|+.-+.+++. |. |.+-.+..+ ..+..|||||++|-++.+.-.-.....+ +-.+|..++. .|++ T Consensus 64 ~~E~~il~~l~H-----pNIv~l~G~c~~-~~~~~lV~Ey~~~GsL~~~L~~~~~~~~~~~~~~ia~~ia~gl~YLH--- 134 (274) T cd05076 64 FETASLMSQVSH-----IHLAFVHGVCVR-GSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALSYLE--- 134 (274) T ss_pred HHHHHHHHHCCC-----CCEEEEEEEEEE-CCEEEEEEECCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH--- T ss_conf 999999980899-----888369999998-99979998899989099997348999999999999999999999985--- Q ss_pred HCCEECCCCCCCEEEEECCCC-------EEEEECCHH Q ss_conf 448661787862289802895-------357434031 Q gi|254780623|r 280 RDGFFHADLHPGNLFVDSKGY-------IVAVDMGIT 309 (517) Q Consensus 280 ~~GfFHaDPHpGNi~v~~dg~-------i~~lDfG~v 309 (517) ..|+.|.|.-|.||+++..|. +-+-|||+. T Consensus 135 ~~~iiHRDlk~~NiLl~~~~~~~~~~~~vKi~DfG~s 171 (274) T cd05076 135 DKNLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVS 171 (274) T ss_pred HCCCCCCCCCHHHEEECCCCCCCCCCCCEEECCCCCC T ss_conf 2895677655644522133545566771374278766 No 313 >pfam01636 APH Phosphotransferase enzyme family. This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881. Probab=97.91 E-value=9.2e-05 Score=56.06 Aligned_cols=183 Identities=17% Similarity=0.185 Sum_probs=82.0 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH--------HH Q ss_conf 666778888655550212888723687640310-468877778899987532114685433469179999--------99 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPG-VRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVR--------AL 195 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~-i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~--------e~ 195 (517) +|+.+++..++|+-... +++.++|+-+++ -...+.....++.++....-. .|..-..+...-+. -. T Consensus 3 ~~~~~G~~n~~~~~~~~----~~~~vlr~~~~~~~~~~~~~e~~~l~~L~~~~~~-vP~~~~~~~~~~~~~~~~~~~~~i 77 (239) T pfam01636 3 RPLSGGASNRTYLVGTG----DGRYVLKLAPPAEAAEELRRELALLRHLAAAGIP-VPRVLAGGTDGGGLGLPFLLMEGL 77 (239) T ss_pred CCCCCCCCCCEEEEEEC----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC-CCCEEECCCCCCCCCCCEEEEEEE T ss_conf 76689755354999949----9318999899886755578999999998733999-982533366754468767999864 Q ss_pred HHHHHHHHH---HHHHHHHHHHHHCCCCCCCCC---CCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHH Q ss_conf 988788865---599998898720244677664---30000102217833530024786324267733200225689999 Q gi|254780623|r 196 EQVTKMEMD---LRLEAAAFSEMAENTVKDQGF---RVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVT 269 (517) Q Consensus 196 ~~~l~~ElD---~~~Ea~n~~~~~~~~~~~~~v---~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~ 269 (517) .-....+.+ -..+.+..+.+++.++....+ ..|... .+....-...++........ ..........+.+. T Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 153 (239) T pfam01636 78 PGEDLTRDDLLDLAERGALLEALARLLARLHSVPPEALPLAR--RLARRLKLLRQLAAALARLV--AAELLDSLAELWER 153 (239) T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHH--CCCCCCCHHHHHHH T ss_conf 671346776313589999999999999999659975578432--23132789999999998752--22234438999999 Q ss_pred HHHHHHHHH--HHCCEECCCCCCCEEEEECCCCEE-EEECCHHEECCHHH Q ss_conf 999999989--744866178786228980289535-74340312169899 Q gi|254780623|r 270 LVQSFLLHT--LRDGFFHADLHPGNLFVDSKGYIV-AVDMGITGRLSKRE 316 (517) Q Consensus 270 l~~~~~~qi--~~~GfFHaDPHpGNi~v~~dg~i~-~lDfG~vg~l~~~~ 316 (517) ....+.... ...++.|+|.||+|++++++++++ +|||+.++.=++.. T Consensus 154 ~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~v~giID~e~a~~g~~~~ 203 (239) T pfam01636 154 LLAALLALLPALPPVLVHGDLHPGNLLVDPGGRVSGVIDFEDAGLGDPAY 203 (239) T ss_pred HHHHHHHCCCCCCCEEEECCCCCCEEEECCCCCEEEEEECHHCCCCCHHH T ss_conf 99999853986895588478998818985999589998103237589999 No 314 >KOG0610 consensus Probab=97.88 E-value=5.9e-05 Score=57.55 Aligned_cols=144 Identities=17% Similarity=0.193 Sum_probs=92.6 Q ss_pred HHHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH Q ss_conf 999867--666778888655550212888723687640310468877778899987532114685433469179999999 Q gi|254780623|r 119 LYCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALE 196 (517) Q Consensus 119 ~F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~ 196 (517) -+.+|+ .-++++.||-||-|.+.+ ++.--|+||.--..-.. + ....+. +.+ T Consensus 75 ~l~~f~llk~LG~GdiG~VyL~~l~~--t~~~fAmKVmdK~~l~~----------------r--kKl~Ra-------~tE 127 (459) T KOG0610 75 GLRHFRLLKRLGCGDIGTVYLVELRG--TNCLFAMKVMDKESLAS----------------R--KKLKRA-------QTE 127 (459) T ss_pred CHHHHHHHHHCCCCCCEEEEEEEECC--CCCEEEEEEECHHHHHH----------------H--HHHHHH-------HHH T ss_conf 88898999980899850699999668--98447888724898866----------------6--677888-------889 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 887888655999988987202446776643000010221783--353002478632426773320022568999999999 Q gi|254780623|r 197 QVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSF 274 (517) Q Consensus 197 ~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~ 274 (517) +.| ++-.+.=.+|..|..+.|++ .|||||+.|--+ ..+....- -+.+.+.-+++| T Consensus 128 ~eI-------------------L~~lDHPFlPTLYa~fet~~~~cl~meyCpGGdL---~~LrqkQp-~~~fse~~aRFY 184 (459) T KOG0610 128 REI-------------------LSLLDHPFLPTLYASFETDKYSCLVMEYCPGGDL---HSLRQKQP-GKRFSESAARFY 184 (459) T ss_pred HHH-------------------HHHCCCCCCCHHHHEEECCCEEEEEEECCCCCCH---HHHHHHCC-CCCCCHHHHHHH T ss_conf 999-------------------9726998600111113046516999824899528---89986378-886562367899 Q ss_pred HHHH-------HHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC Q ss_conf 9989-------7448661787862289802895357434031216 Q gi|254780623|r 275 LLHT-------LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL 312 (517) Q Consensus 275 ~~qi-------~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l 312 (517) ...+ ---|+.--|.-|-||+|.+||.|.+-||-..-+. T Consensus 185 aAEvl~ALEYLHmlGivYRDLKPENILvredGHIMLsDFDLS~~~ 229 (459) T KOG0610 185 AAEVLLALEYLHMLGIVYRDLKPENILVREDGHIMLSDFDLSLRC 229 (459) T ss_pred HHHHHHHHHHHHHHCEEECCCCCCEEEEECCCCEEEEECCCCCCC T ss_conf 999999999997516232147842268722784786403103447 No 315 >KOG0581 consensus Probab=97.88 E-value=3e-05 Score=59.85 Aligned_cols=148 Identities=20% Similarity=0.243 Sum_probs=92.4 Q ss_pred HHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 867--666778888655550212888723687640310468877778899987532114685433469179999999887 Q gi|254780623|r 122 EFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT 199 (517) Q Consensus 122 ~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 199 (517) +++ .-|++++=|-|+++.-+. +|+-.|.|+.+=+++. ++.+++ T Consensus 80 dle~~~~lG~G~gG~V~kv~Hk~--t~~i~AlK~I~~~~~~---------------------------------~~~~Qi 124 (364) T KOG0581 80 DLERLGVLGSGNGGTVYKVRHKP--TGKIYALKVILLNIDP---------------------------------ALQKQI 124 (364) T ss_pred HHHHHHHCCCCCCCEEEEEEECC--CCEEEEEEEEECCCCH---------------------------------HHHHHH T ss_conf 75423112467873799999737--8858998876035788---------------------------------999999 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC---CCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 8886559999889872024467766430000102217---8335300247863242677332002256899999999999 Q gi|254780623|r 200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE---RDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLL 276 (517) Q Consensus 200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st---~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~ 276 (517) .+|++..++. ++|+|+ +-|..+-. +--++|||+||-+++++- +..|.-+......+..+.++ T Consensus 125 ~rEl~il~~~-----------~spyIV--~~ygaF~~~~~~isI~mEYMDgGSLd~~~--k~~g~i~E~~L~~ia~~VL~ 189 (364) T KOG0581 125 LRELEILRSC-----------QSPYIV--GFYGAFYSNGEEISICMEYMDGGSLDDIL--KRVGRIPEPVLGKIARAVLR 189 (364) T ss_pred HHHHHHHHCC-----------CCCCEE--EEEEEEEECCCEEEEEHHHCCCCCHHHHH--HHCCCCCHHHHHHHHHHHHH T ss_conf 9999998607-----------998753--67789984795588636535798789998--76277878999999999998 Q ss_pred H---HH-HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHH Q ss_conf 8---97-4486617878622898028953574340312169899999 Q gi|254780623|r 277 H---TL-RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRF 319 (517) Q Consensus 277 q---i~-~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~ 319 (517) - +- +.+..|-|--|-||+|...|.+=+-|||.-|.|....... T Consensus 190 GL~YLh~~~~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS~a~t 236 (364) T KOG0581 190 GLSYLHEERKIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNSIANT 236 (364) T ss_pred HHHHHHHCCCEEECCCCHHHEEECCCCCEEECCCCCCHHHHHHHCCC T ss_conf 89998654571005778878555379977853455337665111113 No 316 >cd05107 PTKc_PDGFR_beta Catalytic Domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D Probab=97.88 E-value=0.00012 Score=55.26 Aligned_cols=59 Identities=20% Similarity=0.403 Sum_probs=39.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHEEC---CCCCCEEEEEEECCHHHHH----HHHHHHHHHHH Q ss_conf 4788999999867666778888655550212---8887236876403104688----77778899987 Q gi|254780623|r 112 LKAPIEELYCEFDDPIAAASIAQVHPAVVHD---INGYRKVAVKIIRPGVRKR----FFRDIQVMYLI 172 (517) Q Consensus 112 lg~~~~~~F~~fdePlasASiaQVh~A~l~d---~~~g~~VaVKV~rP~i~~~----i~~Dl~~l~~~ 172 (517) +--|.+++ .+.+-|++|.-|+||+|++++ +.+..+||||..+++-.+. +..++.+|+.+ T Consensus 32 wEipr~~L--~lg~~LGeGaFG~V~kg~~~gl~~~~~~~~VAVK~LK~~a~~~e~~~fl~E~~iM~~l 97 (401) T cd05107 32 WEMPRDNL--VLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHL 97 (401) T ss_pred CCCCHHHE--EEEEEEEECCCEEEEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHC T ss_conf 56778994--8830784238818999899067888823799998888889989999999999999853 No 317 >KOG0608 consensus Probab=97.85 E-value=6.6e-05 Score=57.18 Aligned_cols=105 Identities=21% Similarity=0.333 Sum_probs=65.7 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHH---HHHHHHHHHH Q ss_conf 999988987202446776643000010221783--35300247863242677332002256899999---9999998974 Q gi|254780623|r 206 RLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTL---VQSFLLHTLR 280 (517) Q Consensus 206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l---~~~~~~qi~~ 280 (517) ++-+++.+.=|+.+++-+.=.|=+.|-.+--+. -.||+||.|--+-.+ |-..|+=.+.||+-. +.+-.+.+-. T Consensus 670 rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFVMdYIPGGDmMSL--LIrmgIFeE~LARFYIAEltcAiesVHk 747 (1034) T KOG0608 670 RNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMDYIPGGDMMSL--LIRMGIFEEDLARFYIAELTCAIESVHK 747 (1034) T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEECCCCCCHHHH--HHHHCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 64465554566667523774268899875157725899841578408999--9884527898889999999899988875 Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHEEC Q ss_conf 48661787862289802895357434031216 Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRL 312 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l 312 (517) -||.|-|..|-||+|+.||.|-+-|||+|.-+ T Consensus 748 mGFIHRDiKPDNILIDrdGHIKLTDFGLCTGf 779 (1034) T KOG0608 748 MGFIHRDIKPDNILIDRDGHIKLTDFGLCTGF 779 (1034) T ss_pred CCCEECCCCCCCEEECCCCCEEEEECCCCCCC T ss_conf 04122256755467736784563002420253 No 318 >KOG0198 consensus Probab=97.84 E-value=2.8e-05 Score=60.11 Aligned_cols=138 Identities=22% Similarity=0.327 Sum_probs=86.9 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +=++.+|-|.||.|..++ +|+..|||-.-=. . .+. .+++.+|+. T Consensus 23 ~~lG~Gs~G~V~l~~~~~--~g~~~AvK~v~~~-------------------~--~~~-------------~~~l~~Ei~ 66 (313) T KOG0198 23 KLLGRGSFGSVYLATNKK--TGELMAVKSVELE-------------------D--SPT-------------SESLEREIR 66 (313) T ss_pred CCCCCCCCEEEEEEEECC--CCCCEEEEEEECC-------------------C--CHH-------------HHHHHHHHH T ss_conf 610676656999999657--7752256543202-------------------4--446-------------788999999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCC-CHHC-CCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH--- Q ss_conf 599998898720244677664300001-0221-78335300247863242677332002256899999999999897--- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKID-WNRT-ERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL--- 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy-~~~s-t~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~--- 279 (517) ... ++. .+.|+--.-. .... ..--+.|||+.|-++.+.- +..|- .+-+..+..|.+|++ T Consensus 67 iL~------~l~-----~p~IV~~~G~~~~~~~~~~~i~mEy~~~Gsl~~~~--~~~g~---~l~E~~v~~ytr~iL~GL 130 (313) T KOG0198 67 ILS------RLN-----HPNIVQYYGSSSSRENDEYNIFMEYAPGGSLSDLI--KRYGG---KLPEPLVRRYTRQILEGL 130 (313) T ss_pred HHH------HCC-----CCCEEEECCCCCCCCCEEEEEEEECCCCCCHHHHH--HHCCC---CCCHHHHHHHHHHHHHHH T ss_conf 998------479-----98788637855335670667665304799289999--87389---998799999999999999 Q ss_pred ----HCCEECCCCCCCEEEEEC-CCCEEEEECCHHEECCH Q ss_conf ----448661787862289802-89535743403121698 Q gi|254780623|r 280 ----RDGFFHADLHPGNLFVDS-KGYIVAVDMGITGRLSK 314 (517) Q Consensus 280 ----~~GfFHaDPHpGNi~v~~-dg~i~~lDfG~vg~l~~ 314 (517) ..||.|+|.-|.||++++ +|.+-+-|||+.+.+.. T Consensus 131 ~ylHs~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~ 170 (313) T KOG0198 131 AYLHSKGIVHCDIKPANILLDPSNGDVKLADFGLAKKLES 170 (313) T ss_pred HHHHHCCEECCCCCCCEEEEECCCCCEEECCCCCCCCCCC T ss_conf 9997598750576513078807999079624862343155 No 319 >PRK06148 hypothetical protein; Provisional Probab=97.83 E-value=0.0003 Score=52.11 Aligned_cols=195 Identities=15% Similarity=0.168 Sum_probs=91.8 Q ss_pred HHHCCCCCCHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHH-HHHHHHHH Q ss_conf 874887899899999875404788--999999867666778888655550212888723687640310468-87777889 Q gi|254780623|r 92 LQDKMDFFPTNTARLSVASALKAP--IEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRK-RFFRDIQV 168 (517) Q Consensus 92 Lqd~vpp~~~~~v~~~ie~elg~~--~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~-~i~~Dl~~ 168 (517) +.--.|.++.+++.+++++.+|-. +.++-++.| |=++....| |++-|+||-+|+=.. .++.-..+ T Consensus 4 ~~~p~P~~s~~ea~~ll~~~yGi~g~l~~L~sE~D---------~NF~v~~~~---g~~yVLKI~n~~e~~~~le~Q~~a 71 (1015) T PRK06148 4 LSHPAPEFTTKDAEALLAQHFGVSASLTPLDGERD---------LNFRLKTGN---GAGYILKIVNASEPRVESEFQTAL 71 (1015) T ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCC---------CCEEEECCC---CCEEEEEECCCCCCHHHHHHHHHH T ss_conf 78995999999999999986798699976786355---------215897189---987999965887987799999999 Q ss_pred HHHHHHHHC-----CCCCCCCCCCHHH------------H--------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 998753211-----4685433469179------------9--------99999887888655999988987202446776 Q gi|254780623|r 169 MYLIARIQE-----KLLPSMRRLCFSA------------V--------VRALEQVTKMEMDLRLEAAAFSEMAENTVKDQ 223 (517) Q Consensus 169 l~~~~~~~~-----~~~~~~~~~~~~~------------~--------~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~ 223 (517) |+.++..-. +..|+...-.+.. + ..+...+-...-++-.-+..+.+-=+.|. .| T Consensus 72 L~hL~~~~~~l~vP~vi~t~~G~~~~~~~~~~g~~~~vRLlt~l~G~~l~~~~~s~~l~~~LG~~lg~l~~AL~~F~-HP 150 (1015) T PRK06148 72 LDHLAATAPALPVPHLKPSLSGASLASAEDPDGKPHALRLVSWLPGTPLAEAKRTKALLKNLGRALGELDRALQGFM-HP 150 (1015) T ss_pred HHHHHHCCCCCCCCEEEECCCCCEEEEEECCCCCEEEEEEEEEECCEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CC T ss_conf 99998459999888255259998568998689988999989822887713489998999999999999999864898-86 Q ss_pred CCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH------HHHCCEECCCCCCCEEEEEC Q ss_conf 643000010221783353002478632426773320022568999999999998------97448661787862289802 Q gi|254780623|r 224 GFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH------TLRDGFFHADLHPGNLFVDS 297 (517) Q Consensus 224 ~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q------i~~~GfFHaDPHpGNi~v~~ 297 (517) ... -.--|++..... +.++++- + .+.+++++.+..+..|-+. -+..+..|.|++.=||+|++ T Consensus 151 ~~~-R~~~WDl~~a~~-~~~~L~~--i--------~d~~~r~ii~~~~~~f~~~v~P~l~~L~~qvIHnD~Nd~NIlV~~ 218 (1015) T PRK06148 151 GAL-RDFDWDLRHAGR-ARDRLHC--I--------DDPERRALIERFLARFERTVAPRLPALRAQVIHNDANDWNVLVDA 218 (1015) T ss_pred CCC-CCCCCCCCCHHH-HHHHHHH--C--------CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECC T ss_conf 667-877738566499-9999875--4--------999999999999999999740545538612177888755477658 Q ss_pred CC--C-EEEEECCHHEE Q ss_conf 89--5-35743403121 Q gi|254780623|r 298 KG--Y-IVAVDMGITGR 311 (517) Q Consensus 298 dg--~-i~~lDfG~vg~ 311 (517) ++ + .++||||=+.. T Consensus 219 ~~~~~v~GiIDFGD~~~ 235 (1015) T PRK06148 219 DDGERISGLIDFGDAVH 235 (1015) T ss_pred CCCCCEEEEEECCCCCC T ss_conf 88876048997420012 No 320 >KOG1167 consensus Probab=97.83 E-value=0.00018 Score=53.82 Aligned_cols=165 Identities=19% Similarity=0.260 Sum_probs=98.5 Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEC-CCCCCEEEEEEECC Q ss_conf 04598899999998874887899899999875404788999999867666778888655550212-88872368764031 Q gi|254780623|r 78 PDLIGKKLSEDLALLQDKMDFFPTNTARLSVASALKAPIEELYCEFDDPIAAASIAQVHPAVVHD-INGYRKVAVKIIRP 156 (517) Q Consensus 78 ~Dllp~~~~~eL~~Lqd~vpp~~~~~v~~~ie~elg~~~~~~F~~fdePlasASiaQVh~A~l~d-~~~g~~VaVKV~rP 156 (517) .|+.+....+|..+|+...| .++..|... ++++.+|-+-|+.|++.. .+..+.||+|=.++ T Consensus 13 ~d~~~~~k~ee~~~l~q~~p-----------------~~~~~~~~v-~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ 74 (418) T KOG1167 13 SDISAEDKGEEIEQLRQDIP-----------------FISNAYKVV-NKIGEGSFSSVYKATDIEQDTKRRYVALKAIYR 74 (418) T ss_pred HHCCHHHHHHHHHHHHHHHH-----------------HHHHHHHHH-CCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 10264432257788876656-----------------654444100-123522021556666763046551676453033 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCCCCCCCCCCHHCCCH Q ss_conf 046887777889998753211468543346917999999988788865599998---89872024467766430000102 Q gi|254780623|r 157 GVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAA---AFSEMAENTVKDQGFRVPKIDWN 233 (517) Q Consensus 157 ~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~---n~~~~~~~~~~~~~v~vP~vy~~ 233 (517) -....- +..|+.+..++. |.......+++.+. T Consensus 75 ts~p~r------------------------------------i~~El~~L~~~gG~~ni~~~~~~~rnnd~--------- 109 (418) T KOG1167 75 TSSPSR------------------------------------ILNELEMLYRLGGSDNIIKLNGCFRNNDQ--------- 109 (418) T ss_pred CCCCHH------------------------------------HHHHHHHHHHHCCCHHHHCCHHHHCCCCE--------- T ss_conf 368238------------------------------------89999999985240020010333126881--------- Q ss_pred HCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HHHHHHCCEECCCCCCCEEEEEC-CCCEEEEECCHHE Q ss_conf 21783353002478632426773320022568999999999--99897448661787862289802-8953574340312 Q gi|254780623|r 234 RTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSF--LLHTLRDGFFHADLHPGNLFVDS-KGYIVAVDMGITG 310 (517) Q Consensus 234 ~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~--~~qi~~~GfFHaDPHpGNi~v~~-dg~i~~lDfG~vg 310 (517) .++||||.+-....++.. +.+...+-..+-..+ +..+-..|+.|-|--|||++..+ .++-+++|||..- T Consensus 110 ----v~ivlp~~~H~~f~~l~~----~l~~~~i~~Yl~~ll~Al~~~h~~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~ 181 (418) T KOG1167 110 ----VAIVLPYFEHDRFRDLYR----SLSLAEIRWYLRNLLKALAHLHKNGIVHRDIKPSNFLYNRRTQRGVLVDFGLAQ 181 (418) T ss_pred ----EEEEECCCCCCCHHHHHH----CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHH T ss_conf ----379842667557999986----188889999999999986542006820167883311345245872687323677 Q ss_pred ECC Q ss_conf 169 Q gi|254780623|r 311 RLS 313 (517) Q Consensus 311 ~l~ 313 (517) .-+ T Consensus 182 ~~d 184 (418) T KOG1167 182 RYD 184 (418) T ss_pred HHH T ss_conf 777 No 321 >pfam06293 Kdo Lipopolysaccharide kinase (Kdo/WaaP) family. These lipopolysaccharide kinases are related to protein kinases pfam00069. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of S. enterica. Probab=97.81 E-value=0.00012 Score=55.22 Aligned_cols=121 Identities=19% Similarity=0.182 Sum_probs=74.1 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH------CCCCEEEEECCCC-CCCCHHHHHHH-HCCC-HHHHHHHHH Q ss_conf 8865599998898720244677664300001022------1783353002478-63242677332-0022-568999999 Q gi|254780623|r 201 MEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR------TERDVITMEWIDG-VKISDTEKLRA-CGHD-LERLSVTLV 271 (517) Q Consensus 201 ~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~------st~~VLvmE~i~G-~~i~d~~~l~~-~~~d-~~~la~~l~ 271 (517) .+.-..+|-.++.++.+ -+|-+|++.--- ..+-.|++|.++| .++.+.-.-.. .... ++.+.+. + T Consensus 54 ~~~ra~rE~~~L~~L~~-----~Gipvp~pva~~~~~~~~~~~a~LITe~l~~~~~L~~~l~~~~~~~~~~~~~l~~~-v 127 (206) T pfam06293 54 GRTRSFREFRLLRRLRE-----AGVPVPKPVAAGAVKVGGEYQADLLTERLEGAQDLVTWLAQWADPAEELRRALWRA-V 127 (206) T ss_pred CCCCHHHHHHHHHHHHH-----CCCCCCCEEEEEEECCCCCEEEEEEHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHH-H T ss_conf 88699999999999998-----59998876689998368717998864135684209999861344453678999999-9 Q ss_pred HHHHHHHHHCCEECCCCCCCEEEEECCC---CEEEEECCHHEECCH---HHHHHHHHHHHHH Q ss_conf 9999989744866178786228980289---535743403121698---9999999766999 Q gi|254780623|r 272 QSFLLHTLRDGFFHADLHPGNLFVDSKG---YIVAVDMGITGRLSK---RERRFLAEILYGF 327 (517) Q Consensus 272 ~~~~~qi~~~GfFHaDPHpGNi~v~~dg---~i~~lDfG~vg~l~~---~~r~~l~~l~~a~ 327 (517) ...+.++-..|++|+|+++.||++++++ ++.+|||-=+..-++ -....+..|..++ T Consensus 128 g~~i~~~H~~gi~H~DL~~~nIll~~~~~~~~~~LIDldr~~~r~~~~~~~~~dL~rL~rS~ 189 (206) T pfam06293 128 GRLIARMHRAGVNHTDLNAHNILLDTGEGGFKVWLIDFDKCRRRLRGDRWREKDLARLKRSF 189 (206) T ss_pred HHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 99999999876845899900089817998753999987667056887138898799999765 No 322 >PRK09550 mtnK methylthioribose kinase; Reviewed Probab=97.79 E-value=8.3e-05 Score=56.41 Aligned_cols=64 Identities=23% Similarity=0.474 Sum_probs=49.1 Q ss_pred HHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEE--CCHHEECCHHHHHHHHHHHHHHHCCCHH Q ss_conf 999999999989744866178786228980289535743--4031216989999999766999718727 Q gi|254780623|r 267 SVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVD--MGITGRLSKRERRFLAEILYGFISRDYQ 333 (517) Q Consensus 267 a~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lD--fG~vg~l~~~~r~~l~~l~~a~~~~D~~ 333 (517) +..+-.-|+.. -....|||.|+|+||++++ ..-.|| |+..|-+.=+.-..+++++.+...+++. T Consensus 209 v~~Lk~~F~t~--~eaLlHGDLHtGSImv~~~-~tkVIDpEFaFyGP~GFDiG~~iaNlllay~s~~~~ 274 (398) T PRK09550 209 VARLKHKFLTK--AEALLHGDLHTGSIFVTED-ETKVIDPEFAFYGPIGFDIGQLIANLLLNYFSQPGH 274 (398) T ss_pred HHHHHHHHHCC--CHHHHCCCCCCCCEEEECC-CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC T ss_conf 99999987330--2154357776785787078-417965201035874120999999999999606023 No 323 >KOG0582 consensus Probab=97.77 E-value=0.00018 Score=53.73 Aligned_cols=236 Identities=20% Similarity=0.227 Sum_probs=129.3 Q ss_pred HHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 76667788886555502128887236876403104688777788999875321146854334691799999998878886 Q gi|254780623|r 124 DDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM 203 (517) Q Consensus 124 dePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El 203 (517) .+-|+.+-=|+||+|+... .++.||||+. ++ ++.-. + .. T Consensus 31 ~e~IG~G~sa~V~~A~c~p--~~e~VAIK~i--nL------------------Ekc~~------------~-----ld-- 69 (516) T KOG0582 31 QEVIGVGASAVVYLARCIP--TNEVVAIKII--NL------------------EKCNN------------D-----LD-- 69 (516) T ss_pred EEEEECCCEEEEEEEEECC--CCCEEEEEEE--EH------------------HHHHH------------H-----HH-- T ss_conf 8997046305764434204--6877999995--06------------------65203------------6-----99-- Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC-----CCEEEEECCCCCCCCHHHH-HHHHCCCHHHHHHHHHHHH--H Q ss_conf 559999889872024467766430000102217-----8335300247863242677-3320022568999999999--9 Q gi|254780623|r 204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE-----RDVITMEWIDGVKISDTEK-LRACGHDLERLSVTLVQSF--L 275 (517) Q Consensus 204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st-----~~VLvmE~i~G~~i~d~~~-l~~~~~d~~~la~~l~~~~--~ 275 (517) +.++|.+++..+.. |.|..-+|+ .=.+||-|+.|-+.-|+-. .-..|.+-..+|..+-+.. + T Consensus 70 ~l~kE~~~msl~~H----------PNIv~~~~sFvv~~~LWvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL 139 (516) T KOG0582 70 ALRKEVQTMSLIDH----------PNIVTYHCSFVVDSELWVVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKAL 139 (516) T ss_pred HHHHHHHHHHHCCC----------CCCCEEEEEEEECCEEEEEEHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHH T ss_conf 99999987553379----------98320778898365668854333377289999997136534789999999999999 Q ss_pred HHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHH Q ss_conf 98974486617878622898028953574340312169899999997669997187278999999841266778936899 Q gi|254780623|r 276 LHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFA 355 (517) Q Consensus 276 ~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~ 355 (517) .=+-..|..|-|--+|||+++.||.+-+=|||....|-..--+.-.++ ..++..-+...-+.+.+-. .=..|. T Consensus 140 ~YLH~~G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G~R~~~rf-~tfvgtp~wmAPEvl~q~~------~GYdfK 212 (516) T KOG0582 140 DYLHQNGHIHRDVKAGNILIDSDGTVKLADFGVSASLFDSGDRQVTRF-NTFVGTPCWMAPEVLMQQL------HGYDFK 212 (516) T ss_pred HHHHHCCCEECCCCCCCEEECCCCCEEECCCEEEEEECCCCCEEEEEE-CCCCCCCCCCCHHHHHHCC------CCCCCH T ss_conf 999866933034554637986898689747414554101676026751-2324766445848764214------675511 Q ss_pred HHHHHH----HHHCCC-CCHHHCCHHHHHHHHHHHHHHCC----CCCC-HHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 999985----210013-34333113568999997545279----7128-8899999999998849987688988 Q gi|254780623|r 356 QAIRAI----GEPIHG-QSSDVISMGKLLTMLFEITELFD----MMTR-PELVMLQKTMVVVEGVARMLNPEFN 419 (517) Q Consensus 356 ~~i~~~----~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~----~~~P-~~~~ll~r~l~~lEG~~~~LdP~~d 419 (517) .||-.+ ++-..| .|++++.--+++..-+ -...+ ..+| .+...+-|++-.+-+.|..=||+-- T Consensus 213 aDIwSfGITA~ELA~G~aPf~k~pPmkvLl~tL--qn~pp~~~t~~~~~d~~k~~~ksf~e~i~~CL~kDP~kR 284 (516) T KOG0582 213 ADIWSFGITACELAHGHAPFSKYPPMKVLLLTL--QNDPPTLLTSGLDKDEDKKFSKSFREMIALCLVKDPSKR 284 (516) T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH--CCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHCCCCCC T ss_conf 166665578999851888843377288999982--489997433567867763314789999999850396559 No 324 >KOG0032 consensus Probab=97.76 E-value=7.3e-05 Score=56.84 Aligned_cols=146 Identities=18% Similarity=0.203 Sum_probs=97.6 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-++.+.-|+||+|+-+. +|+++|+|+........-. ..-+ T Consensus 41 ~~lG~G~Fg~v~~~~~~~--tg~~~A~K~i~k~~~~~~~-------------------------------------~~~~ 81 (382) T KOG0032 41 RELGRGQFGVVYLCREKS--TGKEVACKVIPKRKLRGKE-------------------------------------DRED 81 (382) T ss_pred EEECCCCCEEEEEEEECC--CCCEEEEEEEECCCCCCCC-------------------------------------HHHH T ss_conf 354689733789977668--9961589983032134631-------------------------------------1788 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHCCE Q ss_conf 59999889872024467766430000102217833530024786324267733-20022568999999999998974486 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLR-ACGHDLERLSVTLVQSFLLHTLRDGF 283 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~-~~~~d~~~la~~l~~~~~~qi~~~Gf 283 (517) ..+|.+.++++.. ...-|.++.+|.. .+.-.||||+++|-.+-|.-.-. -...+...++..++++ ++++...|. T Consensus 82 v~~Ev~il~~l~~---hpniv~l~~~~e~-~~~~~lvmEL~~GGeLfd~i~~~~~sE~da~~~~~~il~a-v~~lH~~gv 156 (382) T KOG0032 82 VRREVAILQQLSG---HPNIVQLKDAFED-PDSVYLVMELCEGGELFDRIVKKHYSERDAAGIIRQILEA-VKYLHSLGV 156 (382) T ss_pred HHHHHHHHHHCCC---CCCEEEEEEEEEC-CCEEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHCCE T ss_conf 9999999986357---9978876137971-6601555430467258888987277689988888988999-999986796 Q ss_pred ECCCCCCCEEEEEC----CCCEEEEECCHHEECCH Q ss_conf 61787862289802----89535743403121698 Q gi|254780623|r 284 FHADLHPGNLFVDS----KGYIVAVDMGITGRLSK 314 (517) Q Consensus 284 FHaDPHpGNi~v~~----dg~i~~lDfG~vg~l~~ 314 (517) .|-|.-|-|+++.. ++++.+.|||......+ T Consensus 157 vHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~ 191 (382) T KOG0032 157 VHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKP 191 (382) T ss_pred EECCCCHHHCEECCCCCCCCCEEEECCCCCCCCCC T ss_conf 55147876701102546777566521687631688 No 325 >cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members. The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista Probab=97.73 E-value=0.00015 Score=54.32 Aligned_cols=181 Identities=18% Similarity=0.180 Sum_probs=81.9 Q ss_pred HHHHHHHHHEECCCCCCEEEEEE-ECCHHHHHHHHHHHHHHHHHHHHCCCCCCCC-------CCCHHHHH-HHHHHHHHH Q ss_conf 88865555021288872368764-0310468877778899987532114685433-------46917999-999988788 Q gi|254780623|r 131 SIAQVHPAVVHDINGYRKVAVKI-IRPGVRKRFFRDIQVMYLIARIQEKLLPSMR-------RLCFSAVV-RALEQVTKM 201 (517) Q Consensus 131 SiaQVh~A~l~d~~~g~~VaVKV-~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~-------~~~~~~~~-~e~~~~l~~ 201 (517) |-|..|..-.- |++.|+.. +||+....++.+.+++..++.-+.--+|.-. .|..+-.+ .-+.-.... T Consensus 7 ~~G~dN~~~rl----G~~~v~R~Prr~~~a~~l~~E~~~L~~La~~lpv~VP~pv~~g~p~~~yp~pw~v~~~l~G~~~~ 82 (235) T cd05155 7 SGGTDNATFRL----GDDMSVRLPSAAGYAGQVRKEQRWLPRLAPHLPLPVPEPLGKGEPGEGYPWPWSVYRWLEGETAT 82 (235) T ss_pred CCCCEEEEEEE----CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCEEEECCCCCCCC T ss_conf 89840148996----88879975797015999999999999872438878898433289855689763445216887787 Q ss_pred HHHHHHHHHHHHHHHCCCC---CCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHH-----HH-HC-CCHHHHHHHHH Q ss_conf 8655999988987202446---776643000010221783353002478632426773-----32-00-22568999999 Q gi|254780623|r 202 EMDLRLEAAAFSEMAENTV---KDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKL-----RA-CG-HDLERLSVTLV 271 (517) Q Consensus 202 ElD~~~Ea~n~~~~~~~~~---~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l-----~~-~~-~d~~~la~~l~ 271 (517) ..+...-......+++.++ ..+---.|... ..++..|.++...... .. .+ .|. ..+..+. T Consensus 83 ~~~~~~~~~~a~~La~~L~aLH~id~~~~~~~g---------~~~~~r~~~l~~~~~~~~~~~~~~~~~~d~-~~~~~~w 152 (235) T cd05155 83 AAALSDPSEFAEDLADFLAALRQIDPSGGPPAG---------RHNFLRGGDLAVRDAETREAIEALEGVIDV-DAARALW 152 (235) T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC---------CCCCCCCCCHHHHHHHHHHHHHHHCCCCCH-HHHHHHH T ss_conf 467678799999999999997378965688667---------666444567899989999999873366477-9999999 Q ss_pred HHHHHHH--HHCCEECCCCCCCEEEEECCCCE-EEEECCHHEECCHHHHHHHHHHHHHHHCCC Q ss_conf 9999989--74486617878622898028953-574340312169899999997669997187 Q gi|254780623|r 272 QSFLLHT--LRDGFFHADLHPGNLFVDSKGYI-VAVDMGITGRLSKRERRFLAEILYGFISRD 331 (517) Q Consensus 272 ~~~~~qi--~~~GfFHaDPHpGNi~v~~dg~i-~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D 331 (517) +..+..- ...-..|||.||||++|+ ||+| ++||||.++-=||.. ++..+-..-| T Consensus 153 ~~al~~p~~~~~v~vHGDl~p~NvLv~-dgrlsgVIDwg~~~vGDPA~-----DLa~aw~~~~ 209 (235) T cd05155 153 EAALRAPWWGPPVWFHGDLAPGNLLVQ-DGRLSAVIDFGCLGVGDPAC-----DLAIAWTLLD 209 (235) T ss_pred HHHHHCCCCCCCEEEECCCCCCCEEEE-CCEEEEEEECCCCCCCCCHH-----HHHHHHHHCC T ss_conf 999747576898877079888718988-99289998777776588189-----9999998479 No 326 >KOG1163 consensus Probab=97.70 E-value=0.00018 Score=53.75 Aligned_cols=136 Identities=18% Similarity=0.351 Sum_probs=90.1 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) .+|+|+|.|-.|.|.-- ++|++|||||-+..+. .|.+ T Consensus 21 rkiGsGSFGdIy~~~~i--~~ge~VAiK~Es~~a~--------------------hpqL--------------------- 57 (341) T KOG1163 21 RKIGSGSFGDIYLGISI--TSGEEVAIKLESSKAK--------------------HPQL--------------------- 57 (341) T ss_pred EEECCCCHHHHEEEEEC--CCCCEEEEEEECCCCC--------------------CCCC--------------------- T ss_conf 86168853231022102--6786699997125578--------------------8630--------------------- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHHHHHHHHH Q ss_conf 599998898720244677664300001022178--3353002478632426773320022568---99999999999897 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQSFLLHTL 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~~~~~qi~ 279 (517) ..|++--.. + ...+-||.+++-.+.+ +||||+-. |-++.|+-..-......+. +|+.++.- ++-+- T Consensus 58 -~yEskvY~i----L--~~g~GiP~i~~y~~e~~ynvlVMdLL-GPsLEdLfnfC~R~ftmkTvLMLaDQml~R-iEyvH 128 (341) T KOG1163 58 -LYESKVYRI----L--QGGVGIPHIRHYGTEKDYNVLVMDLL-GPSLEDLFNFCSRRFTMKTVLMLADQMLSR-IEYVH 128 (341) T ss_pred -HHHHHHHHH----H--CCCCCCCHHHHHCCCCCCCEEEEHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH T ss_conf -678999998----6--26899831211134455555541021-853999999875301478699999999999-99998 Q ss_pred HCCEECCCCCCCEEEEE---CCCCEEEEECCHHEEC Q ss_conf 44866178786228980---2895357434031216 Q gi|254780623|r 280 RDGFFHADLHPGNLFVD---SKGYIVAVDMGITGRL 312 (517) Q Consensus 280 ~~GfFHaDPHpGNi~v~---~dg~i~~lDfG~vg~l 312 (517) ..+|.|-|--|-|++.- ...++.+||||...+. T Consensus 129 ~r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky 164 (341) T KOG1163 129 LRNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKY 164 (341) T ss_pred HHCCCCCCCCCCCEEECCCCCCCEEEEEECCCHHHH T ss_conf 724100567842002312224554899962412332 No 327 >KOG3087 consensus Probab=97.69 E-value=0.00024 Score=52.90 Aligned_cols=98 Identities=23% Similarity=0.375 Sum_probs=65.5 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCC-CHHH--HHHHHCCCH--HHHHHHHHHHHHHHHHH Q ss_conf 999988987202446776643000010221783353002478632-4267--733200225--68999999999998974 Q gi|254780623|r 206 RLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKI-SDTE--KLRACGHDL--ERLSVTLVQSFLLHTLR 280 (517) Q Consensus 206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i-~d~~--~l~~~~~d~--~~la~~l~~~~~~qi~~ 280 (517) .+||+-+.+.+.. .+.+|.+|.-=...+-|.|||++|-+- .+.- .+.....|. ..+++++-+..- -+-. T Consensus 58 ~~Ear~l~k~~~~-----GI~~P~l~~~D~~~~~i~ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~ig-klH~ 131 (229) T KOG3087 58 KQEARLLAKCRAL-----GIPAPRLIFIDTYGGQIYMEFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIG-KLHD 131 (229) T ss_pred HHHHHHHHHHHHH-----CCCCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH-HHHH T ss_conf 9999998889982-----888754898726798689995154047999999970675422668999999999998-7632 Q ss_pred CCEECCCCCCCEEEEECCC-CE--EEEECCHH Q ss_conf 4866178786228980289-53--57434031 Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKG-YI--VAVDMGIT 309 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~dg-~i--~~lDfG~v 309 (517) .+..|||.--.||++.++| ++ .+||||.- T Consensus 132 ndiiHGDLTTSNill~~~~~~~~~~lIdfgls 163 (229) T KOG3087 132 NDIIHGDLTTSNILLRSDGNQITPILIDFGLS 163 (229) T ss_pred CCEECCCCCCCCEEEECCCCCCCEEEEEECCH T ss_conf 78112554513168836988675488860410 No 328 >cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported Probab=97.68 E-value=8e-05 Score=56.53 Aligned_cols=64 Identities=20% Similarity=0.209 Sum_probs=47.8 Q ss_pred HHCCEECCCCCCCEEEEECCCCE-EEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC Q ss_conf 74486617878622898028953-5743403121698999999976699971872789999998412 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYI-VAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGY 344 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i-~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~ 344 (517) +.-++.|||.|||||+|+++|++ ++||||.++.=||.. -|+-++..+...-.+.+.+++.+.|- T Consensus 183 ~~~~lvHGDL~~~hiLvd~~~rvtGVIDW~da~VGDPA~--Dfa~l~~~~g~~~l~~~l~~Y~~agg 247 (276) T cd05152 183 RHTVLVHGDLHPGHILIDEDARVTGLIDWTEAKVGDPAR--DFVLHYRIFGEAGLERLIDAYEAAGG 247 (276) T ss_pred CCCEEEECCCCCCCEEECCCCCEEEEECCCCCCCCCHHH--HHHHHHHHCCHHHHHHHHHHHHHCCC T ss_conf 886346357557707984898589984430147788489--99999987288999999999997589 No 329 >cd05105 PTKc_PDGFR_alpha Catalytic Domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF- Probab=97.67 E-value=0.00062 Score=49.67 Aligned_cols=51 Identities=18% Similarity=0.311 Sum_probs=35.9 Q ss_pred HHHHHHHHHHHHHHHHHHEECCCCC---CEEEEEEECCHHHHHHHH----HHHHHHHH Q ss_conf 8676667788886555502128887---236876403104688777----78899987 Q gi|254780623|r 122 EFDDPIAAASIAQVHPAVVHDINGY---RKVAVKIIRPGVRKRFFR----DIQVMYLI 172 (517) Q Consensus 122 ~fdePlasASiaQVh~A~l~d~~~g---~~VaVKV~rP~i~~~i~~----Dl~~l~~~ 172 (517) .+.+.|++|..|.||+|+++.-..+ .+||||..+++..+.-.. .+.+|+.+ T Consensus 40 ~l~~~LGeGaFG~V~kg~a~~l~~~~~~~~VAVK~LK~~a~~~e~~~fl~E~~iM~~l 97 (400) T cd05105 40 VLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHL 97 (400) T ss_pred EEEEEEEEECCCEEEEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHC T ss_conf 8842785426818999899378888854489998678778989999999999999742 No 330 >KOG0659 consensus Probab=97.61 E-value=0.00017 Score=54.08 Aligned_cols=186 Identities=20% Similarity=0.288 Sum_probs=110.6 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-++-+.-|-||+|+=. .+|+.||||=.+.| .. . +.+..+..+|+- T Consensus 8 ~~lGEG~~gvVyka~d~--~t~~~VAIKKIkl~--------------------~~-k-----------dGi~~talREIK 53 (318) T KOG0659 8 EKLGEGTYGVVYKARDT--ETGKRVAIKKIKLG--------------------NA-K-----------DGINRTALREIK 53 (318) T ss_pred HHHCCCCEEEEEEEEEC--CCCCEEEEEEEECC--------------------CC-C-----------CCCCHHHHHHHH T ss_conf 65067623899998864--77858999986135--------------------32-3-----------573178999999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH----- Q ss_conf 599998898720244677664300001022178335300247863242677332002256899999999999897----- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL----- 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~----- 279 (517) +.+|.++ ..-|..=.+|+..++ =.||.||++ +|++..-.. .-.-++..=+++|+.|++ T Consensus 54 ~Lqel~h----------~nIi~LiD~F~~~~~-l~lVfEfm~----tdLe~vIkd--~~i~l~pa~iK~y~~m~LkGl~y 116 (318) T KOG0659 54 LLQELKH----------PNIIELIDVFPHKSN-LSLVFEFMP----TDLEVVIKD--KNIILSPADIKSYMLMTLKGLAY 116 (318) T ss_pred HHHHCCC----------CCHHHHHHHCCCCCC-EEEEEEECC----CCHHHHHCC--CCCCCCHHHHHHHHHHHHHHHHH T ss_conf 9987068----------204335544157886-079987235----329988512--44446889999999999988999 Q ss_pred --HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHH----------HHHHHHHCC----CHHH----HHHHH Q ss_conf --448661787862289802895357434031216989999999----------766999718----7278----99999 Q gi|254780623|r 280 --RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLA----------EILYGFISR----DYQR----VADVH 339 (517) Q Consensus 280 --~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~----------~l~~a~~~~----D~~~----~~~~l 339 (517) .....|-|.-|-|++++++|.+-+-|||......+..+.... +++.+.-.. |... +++.+ T Consensus 117 ~H~~~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELl 196 (318) T KOG0659 117 CHSKWILHRDLKPNNLLISSDGQLKIADFGLARFFGSPNRIQTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELL 196 (318) T ss_pred HHHHHHHCCCCCCCCEEECCCCCEEEECCCCHHCCCCCCCCCCCCEEEEECCCHHHHCCCHHCCCCCHHHHHHHHHHHHH T ss_conf 98521001357700067768886875002420003787756301001221138677525300178623366889999998 Q ss_pred HHHHCCCCCCCHHHHHHHHHHH Q ss_conf 9841266778936899999985 Q gi|254780623|r 340 FEAGYVPRHHNRFSFAQAIRAI 361 (517) Q Consensus 340 ~~lg~~~~~~d~~~~~~~i~~~ 361 (517) +..-+.+.+.|.+++..-.+.+ T Consensus 197 lr~P~fpG~sDidQL~~If~~L 218 (318) T KOG0659 197 LRVPFFPGDSDIDQLSKIFRAL 218 (318) T ss_pred CCCCCCCCCCHHHHHHHHHHHC T ss_conf 0698889976299999999972 No 331 >KOG4236 consensus Probab=97.60 E-value=0.00018 Score=53.87 Aligned_cols=157 Identities=21% Similarity=0.313 Sum_probs=101.0 Q ss_pred HHHHHHCCCCHHHHHHHHH-HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 9875404788999999867-666778888655550212888723687640310468877778899987532114685433 Q gi|254780623|r 106 LSVASALKAPIEELYCEFD-DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMR 184 (517) Q Consensus 106 ~~ie~elg~~~~~~F~~fd-ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~ 184 (517) ..++++. .+..++.-|. |-++|+-.|-||-|+-+. +|++|||||.-- + + +|.. T Consensus 552 ~qiqe~v--d~stvYQif~devLGSGQFG~VYgg~hRk--tGrdVAvKvIdK-------------------l-r-Fp~k- 605 (888) T KOG4236 552 CQIQENV--DISTVYQIFADEVLGSGQFGTVYGGKHRK--TGRDVAVKVIDK-------------------L-R-FPTK- 605 (888) T ss_pred HHHHHHH--HHHHHHHHHHHHHCCCCCCEEEECCEECC--CCCEEEEEEEEC-------------------C-C-CCCC- T ss_conf 3455423--17889876047511677522465221034--686134665101-------------------2-3-7874- Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCE-EEEECCCCCCCCHHHHHHHHCCCH Q ss_conf 4691799999998878886559999889872024467766430000102217833-530024786324267733200225 Q gi|254780623|r 185 RLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDV-ITMEWIDGVKISDTEKLRACGHDL 263 (517) Q Consensus 185 ~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~V-LvmE~i~G~~i~d~~~l~~~~~d~ 263 (517) +|--+++|.+-++... .|.|+.=.---| +.++| .|||-+.|--+.=+-.- +. T Consensus 606 ----------------qesqlR~EVaILq~l~-----HPGiV~le~M~E-T~ervFVVMEKl~GDMLEMILSs-----Ek 658 (888) T KOG4236 606 ----------------QESQLRNEVAILQNLH-----HPGIVNLECMFE-TPERVFVVMEKLHGDMLEMILSS-----EK 658 (888) T ss_pred ----------------HHHHHHHHHHHHHHCC-----CCCEEEEEEEEC-CCCEEEEEEHHHCCHHHHHHHHH-----HC T ss_conf ----------------1788888999997447-----987567887503-77648998034054199998875-----40 Q ss_pred HHHHHHHHHHHHHHHH-------HCCEECCCCCCCEEEEEC---CCCEEEEECCHHEECCHH Q ss_conf 6899999999999897-------448661787862289802---895357434031216989 Q gi|254780623|r 264 ERLSVTLVQSFLLHTL-------RDGFFHADLHPGNLFVDS---KGYIVAVDMGITGRLSKR 315 (517) Q Consensus 264 ~~la~~l~~~~~~qi~-------~~GfFHaDPHpGNi~v~~---dg~i~~lDfG~vg~l~~~ 315 (517) -++-++..++.+.||+ ..|..|+|..|-|+++.. =.++-+-|||....+.+. T Consensus 659 gRL~er~TkFlvtQIL~ALr~LH~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEk 720 (888) T KOG4236 659 GRLPERITKFLVTQILVALRYLHFKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEK 720 (888) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHEEECCCCCCCCEEECCCCCEEECCHH T ss_conf 56337889999999999998765356521157702244225799874134045400231423 No 332 >KOG0597 consensus Probab=97.58 E-value=0.00071 Score=49.20 Aligned_cols=223 Identities=16% Similarity=0.177 Sum_probs=110.4 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) |-|+-+|-|.||+|+-++ +++-||+|+.--- .+-+.|++ .+.+|++ T Consensus 8 e~iG~Gsfg~VYKgrrK~--t~~~vAik~i~K~--gr~~k~l~------------------------------~l~~ev~ 53 (808) T KOG0597 8 EMIGEGSFGRVYKGRRKY--TIQVVAIKFIDKS--GRNEKELK------------------------------NLRQEVR 53 (808) T ss_pred HHHCCCCCCEEEECCCCC--CEEEEEEEEEHHC--CCCHHHHH------------------------------HHHHHHH T ss_conf 885477530366222326--4028999975201--78647789------------------------------9999999 Q ss_pred HHHHHH--HHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHH-HHHHHHCCC-HHHHHHHHHHHHHHHHHH Q ss_conf 599998--8987202446776643000010221783353002478632426-773320022-568999999999998974 Q gi|254780623|r 205 LRLEAA--AFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDT-EKLRACGHD-LERLSVTLVQSFLLHTLR 280 (517) Q Consensus 205 ~~~Ea~--n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~-~~l~~~~~d-~~~la~~l~~~~~~qi~~ 280 (517) ..++.+ |.-.|.+-|. -++.=++|.||..| .+-.+ +.-.+.+.+ -..+|..++.+.. -+-. T Consensus 54 i~r~lkHpniv~m~esfE-------------t~~~~~vVte~a~g-~L~~il~~d~~lpEe~v~~~a~~LVsaL~-yLhs 118 (808) T KOG0597 54 ILRSLKHPNIVEMLESFE-------------TSAHLWVVTEYAVG-DLFTILEQDGKLPEEQVRAIAYDLVSALY-YLHS 118 (808) T ss_pred HHHHCCCCCHHHHHHHHC-------------CCCEEEEEEHHHHH-HHHHHHHHCCCCCHHHHHHHHHHHHHHHH-HHHH T ss_conf 998617961455887652-------------66627998334331-59999976068977999999999999999-9985 Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH Q ss_conf 48661787862289802895357434031216989999999766999718727899999984126677893689999998 Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRA 360 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i~~ 360 (517) .+..|.|.-|-||++...|.+-|-|||...-++.+. .+..-+.+-.--++--+++-+......|.=.+--- T Consensus 119 ~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~t------~vltsikGtPlYmAPElv~e~pyd~~sDlWslGci--- 189 (808) T KOG0597 119 NRILHRDMKPQNILLEKGGTLKLCDFGLARAMSTNT------SVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCI--- 189 (808) T ss_pred CCCCCCCCCCCEEEECCCCCEEECHHHHHHHCCCCC------EEEEECCCCCCCCCHHHHCCCCCCCHHHHHHHHHH--- T ss_conf 472435687200441478733322024554303572------35530258604237888747986312557888889--- Q ss_pred HHHHCCCCC-HHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH Q ss_conf 521001334-333113568999997545279712888999999999 Q gi|254780623|r 361 IGEPIHGQS-SDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMV 405 (517) Q Consensus 361 ~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~P~~~~ll~r~l~ 405 (517) +.+-|.|+| +-.-++.++...+..---+.+....++|.-+...++ T Consensus 190 lYE~~~G~PPF~a~si~~Lv~~I~~d~v~~p~~~S~~f~nfl~gLL 235 (808) T KOG0597 190 LYELYVGQPPFYARSITQLVKSILKDPVKPPSTASSSFVNFLQGLL 235 (808) T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH T ss_conf 9998628997168789999999844899996200489999999985 No 333 >KOG1166 consensus Probab=97.53 E-value=0.00011 Score=55.63 Aligned_cols=179 Identities=16% Similarity=0.231 Sum_probs=96.9 Q ss_pred HHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 76667788886555502128887236876403104688777788999875321146854334691799999998878886 Q gi|254780623|r 124 DDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM 203 (517) Q Consensus 124 dePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El 203 (517) +.=++-+|-|+||+|+-.+ |+.||+||++|-..=-+=--+.++.++- |. T Consensus 703 ~~e~G~g~y~~vy~a~~~~---~~~~alK~e~P~~~WEfYI~~q~~~RLk-------~~--------------------- 751 (974) T KOG1166 703 SKEIGEGSYGSVYVATHSN---GKLVALKVEKPPNPWEFYICLQVMERLK-------PQ--------------------- 751 (974) T ss_pred EEEECCCCCEEEEEEECCC---CCEEEEEEECCCCCEEEEEHHHHHHHHC-------HH--------------------- T ss_conf 7540454534799864378---7379998506998545440589997603-------55--------------------- Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHH-----HHHHHHHHHHHHH Q ss_conf 55999988987202446776643000010221783353002478632426773320022568-----9999999999989 Q gi|254780623|r 204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLER-----LSVTLVQSFLLHT 278 (517) Q Consensus 204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~-----la~~l~~~~~~qi 278 (517) +-. ..-.|.--.+ |.+..+||+||.+=-++=|+.. ..-++.. ++-.++ -.++++ T Consensus 752 -----------~~~---~~~~~~~a~~---~~~~S~lv~ey~~~Gtlld~~N---~~~~m~e~lv~~~~~qml-~ive~l 810 (974) T KOG1166 752 -----------MLP---SIMHISSAHV---FQNASVLVSEYSPYGTLLDLIN---TNKVMDEYLVMFFSCQML-RIVEHL 810 (974) T ss_pred -----------HHC---CHHHHHHHHC---CCCCCEEEEECCCCCCHHHHHC---CCCCCCCHHHHHHHHHHH-HHHHHH T ss_conf -----------421---1677888870---3776566330235411887644---577898100257799999-999998 Q ss_pred HHCCEECCCCCCCEEEEECC-------CCEEEEECCHHEE---CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC Q ss_conf 74486617878622898028-------9535743403121---6989999999766999718727899999984126677 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSK-------GYIVAVDMGITGR---LSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRH 348 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~d-------g~i~~lDfG~vg~---l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~ 348 (517) -..|..|||.-|-|++++.. --|.+||||.--- +++. .-|.+...-|.-.|.+....=.+ +-. T Consensus 811 H~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siDm~lfp~~------~~F~~~~~td~f~C~EM~~grpW-tYq 883 (974) T KOG1166 811 HAMGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSIDMKLFPDG------TKFKAVWHTDLFDCIEMREGRPW-TYQ 883 (974) T ss_pred HHCCEECCCCCCCEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCC------CEEEEEECCCCCHHHHHHCCCCC-CHH T ss_conf 75163104678651475146678886654699962640223676888------67766633531003888669997-324 Q ss_pred CCHHHHHHHHHHH Q ss_conf 8936899999985 Q gi|254780623|r 349 HNRFSFAQAIRAI 361 (517) Q Consensus 349 ~d~~~~~~~i~~~ 361 (517) +|.-.+..-+..+ T Consensus 884 ~DyfGlAa~~h~m 896 (974) T KOG1166 884 IDYFGLAATVHVM 896 (974) T ss_pred HHHHHHHHHHHHH T ss_conf 5467899999999 No 334 >KOG0577 consensus Probab=97.52 E-value=0.00031 Score=51.99 Aligned_cols=180 Identities=17% Similarity=0.169 Sum_probs=106.3 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH Q ss_conf 47889999998676667788886555502128887236876403104688777788999875321146854334691799 Q gi|254780623|r 112 LKAPIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAV 191 (517) Q Consensus 112 lg~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~ 191 (517) +..+++++|...- -|+-||.|-||.|+-.- +.+-||||-. .|.+. - T Consensus 20 ~k~DPEklf~dLr-EIGHGSFGAVYfArd~~--n~evVAIKKM-----------------------sySGK--------Q 65 (948) T KOG0577 20 FKDDPEKLFSDLR-EIGHGSFGAVYFARDVR--NSEVVAIKKM-----------------------SYSGK--------Q 65 (948) T ss_pred CCCCHHHHHHHHH-HHCCCCCCEEEEEECCC--CCCEEEEEEC-----------------------CCCCC--------C T ss_conf 2489899988899-84478643267754157--5503444112-----------------------55552--------2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHH- Q ss_conf 9999988788865599998898720244677664300001022178335300247863242677332002256899999- Q gi|254780623|r 192 VRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTL- 270 (517) Q Consensus 192 ~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l- 270 (517) -.|=+..|.+|+-|.+-.++- |.-+.+.. |-. -+.-.|||||+-| +-+|+-..+.-+..--.+|..- T Consensus 66 s~EKWqDIlKEVrFL~~l~HP-----ntieYkgC-----yLr-e~TaWLVMEYClG-SAsDlleVhkKplqEvEIAAi~~ 133 (948) T KOG0577 66 SNEKWQDILKEVRFLRQLRHP-----NTIEYKGC-----YLR-EHTAWLVMEYCLG-SASDLLEVHKKPLQEVEIAAITH 133 (948) T ss_pred CHHHHHHHHHHHHHHHHCCCC-----CCCCCCCE-----EEC-CCHHHHHHHHHHC-CHHHHHHHHHCCCHHHHHHHHHH T ss_conf 078999999999999961598-----72120211-----231-2048899998714-47889999755512789999998 Q ss_pred -HHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHH------HHHHHHHHHHCCCHHHHHH Q ss_conf -999999897448661787862289802895357434031216989999------9997669997187278999 Q gi|254780623|r 271 -VQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERR------FLAEILYGFISRDYQRVAD 337 (517) Q Consensus 271 -~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~------~l~~l~~a~~~~D~~~~~~ 337 (517) +-.-+.-+--++-+|-|--+|||++++.|-+-+-|||...-.+|..-- .--++++|+-.+.|++-++ T Consensus 134 gaL~gLaYLHS~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~PAnsFvGTPywMAPEVILAMDEGqYdgkvD 207 (948) T KOG0577 134 GALQGLAYLHSHNRIHRDIKAGNILLSEPGLVKLADFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVD 207 (948) T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEECCCCCHHHCCCHHCCCCCCCCCCHHHHEECCCCCCCCCCC T ss_conf 88889999987547763111363674377725522355145418212035884311536740013556477411 No 335 >PTZ00267 NIMA-related protein kinase; Provisional Probab=97.49 E-value=0.0016 Score=46.53 Aligned_cols=96 Identities=18% Similarity=0.231 Sum_probs=67.5 Q ss_pred CCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH-------HCCEECCCCC Q ss_conf 46776643000010221783--35300247863242677332002256899999999999897-------4486617878 Q gi|254780623|r 219 TVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL-------RDGFFHADLH 289 (517) Q Consensus 219 ~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~-------~~GfFHaDPH 289 (517) +++-+.+-|=+-|.++-+++ .+||||.+|--+... ++....+....-+.-+..+|.|+. ..+..|-|.- T Consensus 119 La~cdH~~IIK~~e~Fq~~d~L~iVMEYa~gGDL~~~--Ik~r~~~~~pF~E~ea~~~F~QI~lAL~ylH~~~IlHRDLK 196 (478) T PTZ00267 119 LAACDHFGIVKHFDDFKSDDKLLLIMEYGSGGDLNKQ--IKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRKMMHRDLK 196 (478) T ss_pred HHCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCHHHH--HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 8718973210212555358758999983577748999--99877537886679999999999999999975793316576 Q ss_pred CCEEEEECCCCEEEEECCHHEECCHHH Q ss_conf 622898028953574340312169899 Q gi|254780623|r 290 PGNLFVDSKGYIVAVDMGITGRLSKRE 316 (517) Q Consensus 290 pGNi~v~~dg~i~~lDfG~vg~l~~~~ 316 (517) |-|||++.+|.+=+-|||+...++... T Consensus 197 ~~NIfL~~~G~IKLGDFGiSK~l~~t~ 223 (478) T PTZ00267 197 SANIFLMPTGIIKLGDFGFSKQYSDSV 223 (478) T ss_pred HHHEEECCCCCEEECCCCCCEECCCCC T ss_conf 888567689988873563322237666 No 336 >KOG1164 consensus Probab=97.49 E-value=0.00071 Score=49.21 Aligned_cols=138 Identities=19% Similarity=0.271 Sum_probs=85.9 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHH---HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 666778888655550212888723687640310468---87777889998753211468543346917999999988788 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRK---RFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKM 201 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~---~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 201 (517) ..+++++.||||.+.-.... .+.+|+|+-...... .+..+..++..+ T Consensus 24 ~~iG~G~fG~V~~v~~~~~~-~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l----------------------------- 73 (322) T KOG1164 24 KKIGEGGFGAVYLVSDKSEK-NKEYAKKLEKKELGSKPSVLKIEIQVLKKL----------------------------- 73 (322) T ss_pred EEECCCCCEEEEEEEECCCC-CEEEEEEEEEECCCCCCCCCHHHHHHHHHH----------------------------- T ss_conf 77179998389999965888-676899998631567764210599999987----------------------------- Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH-CCC--CEEEEECCCCCCCCHHHHHHH-HCCCHHHHHHHHHHHH--H Q ss_conf 865599998898720244677664300001022-178--335300247863242677332-0022568999999999--9 Q gi|254780623|r 202 EMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR-TER--DVITMEWIDGVKISDTEKLRA-CGHDLERLSVTLVQSF--L 275 (517) Q Consensus 202 ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~-st~--~VLvmE~i~G~~i~d~~~l~~-~~~d~~~la~~l~~~~--~ 275 (517) .. ....-++|.+++.. .+. +.+||+.+ |.++.|+-.... ................ + T Consensus 74 --------------~~---~~~~~~~~~~~~~G~~~~~~~~iVM~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l 135 (322) T KOG1164 74 --------------EK---KNGPSHFPKLLDHGRSTEDFNFIVMSLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNAL 135 (322) T ss_pred --------------HH---CCCCCCCCEEEECCCCCCCCCEEEEECC-CCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHH T ss_conf --------------41---4577898857744655786488999615-88999999757778878303999999999999 Q ss_pred HHHHHCCEECCCCCCCEEEEECCC-----CEEEEECCHHE Q ss_conf 989744866178786228980289-----53574340312 Q gi|254780623|r 276 LHTLRDGFFHADLHPGNLFVDSKG-----YIVAVDMGITG 310 (517) Q Consensus 276 ~qi~~~GfFHaDPHpGNi~v~~dg-----~i~~lDfG~vg 310 (517) +.+-..||+|.|-+|+|+.+...+ .+.++|||+.. T Consensus 136 ~~lH~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar 175 (322) T KOG1164 136 EDLHSKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLAR 175 (322) T ss_pred HHHHHCCEECCCCCHHHEEECCCCCCCCCEEEEEECCCCC T ss_conf 9998488343668767646225676655458897211451 No 337 >KOG0603 consensus Probab=97.48 E-value=0.00032 Score=51.85 Aligned_cols=77 Identities=22% Similarity=0.333 Sum_probs=54.1 Q ss_pred CEEEEECCCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEE-ECCCCEEEEECCHHEECCHH Q ss_conf 33530024786324267733200-22568999999999998974486617878622898-02895357434031216989 Q gi|254780623|r 238 DVITMEWIDGVKISDTEKLRACG-HDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFV-DSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 238 ~VLvmE~i~G~~i~d~~~l~~~~-~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v-~~dg~i~~lDfG~vg~l~~~ 315 (517) --+|||.++|--+-+.-.-+... .....++..++.++. -+-..|++|.|.|||||++ ..+|.|=+.|||--..+.+. T Consensus 391 ~~~v~e~l~g~ell~ri~~~~~~~~e~~~w~~~lv~Av~-~LH~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~ 469 (612) T KOG0603 391 IYLVMELLDGGELLRRIRSKPEFCSEASQWAAELVSAVD-YLHEQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERS 469 (612) T ss_pred EEEEEHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHH-HHHHCCEEECCCCHHHEEECCCCCCEEEEEECHHHHCCHH T ss_conf 466531303407889887151137899999999999999-9974686535788332663279885799972003207644 No 338 >KOG0575 consensus Probab=97.48 E-value=7.1e-05 Score=56.94 Aligned_cols=134 Identities=20% Similarity=0.268 Sum_probs=92.1 Q ss_pred HHHHHHHHHHHHHHEECCCCCCEEEEEEEC------CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 667788886555502128887236876403------10468877778899987532114685433469179999999887 Q gi|254780623|r 126 PIAAASIAQVHPAVVHDINGYRKVAVKIIR------PGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT 199 (517) Q Consensus 126 PlasASiaQVh~A~l~d~~~g~~VaVKV~r------P~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 199 (517) =|+-|.-|+||+|+-.+ +|+.||+||.. |+.++.+..++.+-+.+. T Consensus 25 ~LGkGgFA~cYe~~~~~--tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~-------------------------- 76 (592) T KOG0575 25 FLGKGGFARCYEARDLD--TGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLK-------------------------- 76 (592) T ss_pred EECCCCCEEEEEEEECC--CCCEEEEEEEEHHHHCCCCHHHHHHHHHHHHHHCC-------------------------- T ss_conf 45467665889978747--78678899842677327206789998999987058-------------------------- Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 88865599998898720244677664300001022178335300247863242677332002256899999999999897 Q gi|254780623|r 200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL 279 (517) Q Consensus 200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~ 279 (517) -.|.-+|...|.++..|++ ..|+|..+- .||+.. .++.+-+.=++.|++||. T Consensus 77 ---------HpnIV~f~~~FEDs~nVYi---vLELC~~~s-L~el~K---------------rrk~ltEpEary~l~QIv 128 (592) T KOG0575 77 ---------HPNIVQFYHFFEDSNNVYI---VLELCHRGS-LMELLK---------------RRKPLTEPEARYFLRQIV 128 (592) T ss_pred ---------CCCEEEEEEEEECCCCEEE---EEEECCCCC-HHHHHH---------------HCCCCCCHHHHHHHHHHH T ss_conf ---------9857766667525880699---987268760-999997---------------457778499999999999 Q ss_pred -------HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf -------448661787862289802895357434031216989 Q gi|254780623|r 280 -------RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 280 -------~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) ..|..|=|.--||||++.+-.+=+=|||....+.+. T Consensus 129 ~GlkYLH~~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~ 171 (592) T KOG0575 129 EGLKYLHSLGIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYD 171 (592) T ss_pred HHHHHHHHCCCEECCCCHHHEEECCCCCEEECCCCEEEEECCC T ss_conf 9999988657032244221201357675776254014561576 No 339 >KOG0612 consensus Probab=97.42 E-value=0.0011 Score=47.86 Aligned_cols=68 Identities=25% Similarity=0.453 Sum_probs=49.7 Q ss_pred EEEEECCCCCCCCHHHHH-HHHCCCHHHHHHHHHHHHHH-------HHHHCCEECCCCCCCEEEEECCCCEEEEECCHHE Q ss_conf 353002478632426773-32002256899999999999-------8974486617878622898028953574340312 Q gi|254780623|r 239 VITMEWIDGVKISDTEKL-RACGHDLERLSVTLVQSFLL-------HTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITG 310 (517) Q Consensus 239 VLvmE~i~G~~i~d~~~l-~~~~~d~~~la~~l~~~~~~-------qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg 310 (517) -+||||+.|- |+-.| ... + .+-+..+++|.. .+-.-||.|-|--|-|++++..|.|=+-|||.|- T Consensus 151 YlVMdY~pGG---DlltLlSk~--~--~~pE~~ArFY~aEiVlAldslH~mgyVHRDiKPDNvLld~~GHikLADFGsCl 223 (1317) T KOG0612 151 YLVMDYMPGG---DLLTLLSKF--D--RLPEDWARFYTAEIVLALDSLHSMGYVHRDIKPDNVLLDKSGHIKLADFGSCL 223 (1317) T ss_pred EEEEECCCCC---HHHHHHHHC--C--CCHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEECCCCCEEECCCHHHH T ss_conf 8888603683---198887625--8--88189999999999999999986151013578440576366867522105677 Q ss_pred ECC Q ss_conf 169 Q gi|254780623|r 311 RLS 313 (517) Q Consensus 311 ~l~ 313 (517) .++ T Consensus 224 km~ 226 (1317) T KOG0612 224 KMD 226 (1317) T ss_pred HCC T ss_conf 307 No 340 >KOG1095 consensus Probab=97.41 E-value=0.00067 Score=49.42 Aligned_cols=194 Identities=20% Similarity=0.265 Sum_probs=118.9 Q ss_pred HHHHHHHHHHHHHHHHHHEECCCCCC----EEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 86766677888865555021288872----36876403104688777788999875321146854334691799999998 Q gi|254780623|r 122 EFDDPIAAASIAQVHPAVVHDINGYR----KVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ 197 (517) Q Consensus 122 ~fdePlasASiaQVh~A~l~d~~~g~----~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 197 (517) ++..+|+.+--|-||+|.+.+.. |. .||||..+++- T Consensus 695 ~l~~~lG~G~FG~VY~g~~~~~~-~~~~~~~vaiK~l~~~~--------------------------------------- 734 (1025) T KOG1095 695 TLLRVLGKGAFGEVYEGTYSDVP-GSVSPIQVAVKSLKRLS--------------------------------------- 734 (1025) T ss_pred EEEEEECCCCCCCEEEEEEECCC-CCCCCEEEEEEECCCCC--------------------------------------- T ss_conf 76443045554315788985689-98551478997325567--------------------------------------- Q ss_pred HHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHH------HHCCCHHHHHHHH Q ss_conf 87888655999988987202-4467766430000102217833530024786324267733------2002256899999 Q gi|254780623|r 198 VTKMEMDLRLEAAAFSEMAE-NTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLR------ACGHDLERLSVTL 270 (517) Q Consensus 198 ~l~~ElD~~~Ea~n~~~~~~-~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~------~~~~d~~~la~~l 270 (517) ...++.||..||.+|..|.. |.-.--.|.+. ++...+++||++|--+-..-+-. .....+++|..-. T Consensus 735 ~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~------~~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a 808 (1025) T KOG1095 735 SEQEVSDFLKEALLMSKFDHPNIVSLIGVCLD------SGPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFA 808 (1025) T ss_pred CHHHHHHHHHHHHHHHCCCCCCEEEEEEEECC------CCCCEEEEHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHH T ss_conf 88999999999988752788662337776058------998678850204672899987436666777878899999999 Q ss_pred HH--HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHCCCC Q ss_conf 99--99998974486617878622898028953574340312169899999997669997187278999-9998412667 Q gi|254780623|r 271 VQ--SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVAD-VHFEAGYVPR 347 (517) Q Consensus 271 ~~--~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~-~l~~lg~~~~ 347 (517) ++ .-++-+-..+|+|=|.-.=|.+++....+-+-||||...+- +.||.+.-. +++=.-+-+| T Consensus 809 ~dvA~G~~YLe~~~fvHRDLAaRNCLL~~~r~VKIaDFGlArDiy---------------~~~yyr~~~~a~lPvkWm~P 873 (1025) T KOG1095 809 LDVAKGMNYLESKHFVHRDLAARNCLLDERRVVKIADFGLARDIY---------------DKDYYRKHGEAMLPVKWMPP 873 (1025) T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHEEECCCCCEEECCCCHHHHHH---------------HCHHEECCCCCCCCEECCCH T ss_conf 988644578986797675510443232156747874441137664---------------01004316742362552787 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHH Q ss_conf 7893689999998521001334333113568999997545 Q gi|254780623|r 348 HHNRFSFAQAIRAIGEPIHGQSSDVISMGKLLTMLFEITE 387 (517) Q Consensus 348 ~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 387 (517) +. +.+..++..-+-++||-++=+++.... T Consensus 874 ----Es-------l~d~iFtskSDvWsFGVllWEifslG~ 902 (1025) T KOG1095 874 ----ES-------LKDGIFTSKSDVWSFGVLLWEIFSLGA 902 (1025) T ss_pred ----HH-------HHHCCCCCCCCHHHHHHHHHHHHHCCC T ss_conf ----99-------851663212112366789999983788 No 341 >KOG0585 consensus Probab=97.40 E-value=0.0023 Score=45.27 Aligned_cols=159 Identities=17% Similarity=0.189 Sum_probs=94.3 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) .-++++|-|-|-.|+=- ..|+-|||||..-. ++.........+..+...+..+ T Consensus 103 ~eiG~G~yGkVkLar~~--~~~~l~AiKil~K~------------~~~~~~~~~~~~a~~~~~~ekv------------- 155 (576) T KOG0585 103 KEIGSGQYGKVKLARDE--VDGKLYAIKILPKK------------ELRRQYGFPRQPAMKLMPIEKV------------- 155 (576) T ss_pred HHHCCCCCCEEEEEEEC--CCCCEEEEEEECHH------------HHHHHCCCCCCCCCCCCCHHHH------------- T ss_conf 34258764269988615--77827999952534------------5433115654500245718999------------- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC-EEEEECCCCCCCCHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 5999988987202446776643000010221783-35300247863242677332-002256899999999999897448 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD-VITMEWIDGVKISDTEKLRA-CGHDLERLSVTLVQSFLLHTLRDG 282 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~-VLvmE~i~G~~i~d~~~l~~-~~~d~~~la~~l~~~~~~qi~~~G 282 (517) ++|..-+++... -.-|..=+|.++-.+.+ -||.||+..-++......+. ...+-.+---+-+-.-++-+-..| T Consensus 156 -~~EIailKkl~H----~nVV~LiEvLDDP~s~~~YlVley~s~G~v~w~p~d~~els~~~Ar~ylrDvv~GLEYLH~Qg 230 (576) T KOG0585 156 -RREIAILKKLHH----PNVVKLIEVLDDPESDKLYLVLEYCSKGEVKWCPPDKPELSEQQARKYLRDVVLGLEYLHYQG 230 (576) T ss_pred -HHHHHHHHHCCC----CCEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf -999999973578----671577775068565736998772237755667998533048999999999987788887647 Q ss_pred EECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 661787862289802895357434031216989 Q gi|254780623|r 283 FFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 283 fFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) ..|.|--|-|+++..+|.+-+=|||..-..+.. T Consensus 231 iiHRDIKPsNLLl~~~g~VKIsDFGVs~~~~~~ 263 (576) T KOG0585 231 IIHRDIKPSNLLLSSDGTVKISDFGVSNEFPQG 263 (576) T ss_pred EECCCCCHHHEEECCCCCEEEECCCEEEECCCC T ss_conf 201566643357758885886035114411467 No 342 >PRK12274 serine/threonine protein kinase; Provisional Probab=97.40 E-value=0.0017 Score=46.29 Aligned_cols=120 Identities=20% Similarity=0.234 Sum_probs=82.5 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEC Q ss_conf 99998898720244677664300001022178335300247863242677332002256899999999999897448661 Q gi|254780623|r 206 RLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFH 285 (517) Q Consensus 206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFH 285 (517) .+|.+.+++... --.+|+.+. .+.+-|+-+||+|.++-... ..| |..- -+-++..++++-.-|+-| T Consensus 29 ~rE~raL~~l~G------l~~~P~ll~--~d~~~Lvr~~i~G~~L~~~~---p~g-d~~f--Frsa~rll~~mH~~Gv~H 94 (198) T PRK12274 29 RREALALRQLDG------LPRTPRLLH--WDGRHLDRSYLAGDAMYQRP---PRG-DLAY--FRAARRLLQQLHRCGVAH 94 (198) T ss_pred HHHHHHHHHCCC------CCCCCCEEE--ECCCEEEEEEECCCCCHHCC---CCC-CHHH--HHHHHHHHHHHHHCCCCC T ss_conf 999999985569------888874465--45873776432684300058---889-7699--999999999999837744 Q ss_pred CCC-CCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC Q ss_conf 787-86228980289535743403121698999999976699971872789999998412 Q gi|254780623|r 286 ADL-HPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGY 344 (517) Q Consensus 286 aDP-HpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~ 344 (517) .|. ++||+++.+||+-.+|||-.....++.-+ ++.-+...|...+.+.-..-|. T Consensus 95 ~DLak~~N~L~~~dg~p~liDFQlA~~~~rr~~-----~~Rila~eDlrhllK~kr~y~~ 149 (198) T PRK12274 95 NDLAKEANWLVQEDGSPAVIDFQLAVRGNPRAR-----WMRLLAREDLRHLLKHKRMYCP 149 (198) T ss_pred CHHCCCCCEEECCCCCEEEEEEEECCCCCCHHH-----HHHHHHHHHHHHHHHHHHHHCC T ss_conf 202055588887999978897441002363038-----9999999989999998886389 No 343 >PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed Probab=97.38 E-value=0.0013 Score=47.15 Aligned_cols=102 Identities=24% Similarity=0.337 Sum_probs=67.8 Q ss_pred CCCCCHHCCCHHCCCCE------EEEECCCCCC-CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEE Q ss_conf 66430000102217833------5300247863-2426773320022568999999999998974486617878622898 Q gi|254780623|r 223 QGFRVPKIDWNRTERDV------ITMEWIDGVK-ISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFV 295 (517) Q Consensus 223 ~~v~vP~vy~~~st~~V------LvmE~i~G~~-i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v 295 (517) ..+-||+|+-...+++- |.+|.|+|.. +.+. +.....+...- .-+.....++...|++|+|...-||++ T Consensus 101 ~glpVP~PvAa~v~r~g~~Y~Adiite~I~~a~~L~~~--L~~~~l~~~~w--~~iG~~I~~fH~~gV~H~DLN~~NILi 176 (240) T PRK01723 101 AGLPVPRPIAARVVRHGLFYRADILIERIEGARDLVAL--LQEGPLSEEQW--QAIGRLIARFHDAGVYHADLNAHNILL 176 (240) T ss_pred CCCCCCCHHHHHHEECCEEEEHHHHHHHCCCCCCHHHH--HHHCCCCHHHH--HHHHHHHHHHHHCCCCCCCCCHHHEEE T ss_conf 79999817777703236278835656356897048999--85089988999--999999999997489766667441678 Q ss_pred ECCCCEEEEECCHHEECCH---HHHHHHHHHHHHHH Q ss_conf 0289535743403121698---99999997669997 Q gi|254780623|r 296 DSKGYIVAVDMGITGRLSK---RERRFLAEILYGFI 328 (517) Q Consensus 296 ~~dg~i~~lDfG~vg~l~~---~~r~~l~~l~~a~~ 328 (517) ++++++.+|||-=+..-++ -...++.+|..++. T Consensus 177 d~~~~vwlIDFDk~~~~~~~~~Wk~~NL~RL~RSl~ 212 (240) T PRK01723 177 DAGGKFWLIDFDRGELRTPATRWKQANLARLLRSFN 212 (240) T ss_pred CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 799988999886303368864488999999999899 No 344 >cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any Probab=97.35 E-value=0.0066 Score=41.71 Aligned_cols=29 Identities=24% Similarity=0.519 Sum_probs=26.2 Q ss_pred CCCCCCEEEEECCCCEEEEECC-HHEECCH Q ss_conf 7878622898028953574340-3121698 Q gi|254780623|r 286 ADLHPGNLFVDSKGYIVAVDMG-ITGRLSK 314 (517) Q Consensus 286 aDPHpGNi~v~~dg~i~~lDfG-~vg~l~~ 314 (517) +|=|.||||++++|++.=|||| +.|..++ T Consensus 207 gDRHn~NImi~~~GhlfHIDFG~~Lg~~~~ 236 (353) T cd05166 207 CDRHNDNIMLTKSGHMFHIDFGKFLGHAQM 236 (353) T ss_pred CCCCCCCEEECCCCCEEEEEHHHHHCCCCC T ss_conf 666788646889985899864466468876 No 345 >pfam01633 Choline_kinase Choline/ethanolamine kinase. Choline kinase catalyses the committed step in the synthesis of phosphatidylcholine by the CDP-choline pathway. This alignment covers the protein kinase portion of the protein. The divergence of this family makes it very difficult to create a model that specifically predicts choline/ethanolamine kinases only. However if Choline_kinase_C is also present then it is definitely a member of this family. Probab=97.31 E-value=0.0013 Score=47.18 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=27.2 Q ss_pred CCEECCCCCCCEEEEE-CCCCEEEEECCHHEECCH Q ss_conf 4866178786228980-289535743403121698 Q gi|254780623|r 281 DGFFHADLHPGNLFVD-SKGYIVAVDMGITGRLSK 314 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~-~dg~i~~lDfG~vg~l~~ 314 (517) -.|=|.|.+||||++. .++++.||||=-.|.=++ T Consensus 141 ~v~cHNDL~~~Nil~~~~~~~l~lID~EYag~n~~ 175 (208) T pfam01633 141 IVFCHNDLQPGNILLLESTNRLVLIDFEYASYNYR 175 (208) T ss_pred EEEEEECCCCCCEEEECCCCEEEEEEEEECCCCCH T ss_conf 16654058866665628998499998840566851 No 346 >KOG0587 consensus Probab=97.29 E-value=0.0003 Score=52.10 Aligned_cols=150 Identities=18% Similarity=0.246 Sum_probs=97.3 Q ss_pred HHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHH--HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 766677888865555021288872368764031046--887777889998753211468543346917999999988788 Q gi|254780623|r 124 DDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVR--KRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKM 201 (517) Q Consensus 124 dePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~--~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 201 (517) .|-++-+.=||||+++=++ .|+-+||||+.|... +.|+....+++... ..|. T Consensus 24 ~Evig~GtygkVyk~~~~k--~gqlaAiKI~d~~ed~deEIE~EyniLk~~~-----~HpN------------------- 77 (953) T KOG0587 24 IEVIGNGTYGKVYKGRHVK--TGQLAAIKIMDPTEDEEEEIELEYNMLKKYS-----HHPN------------------- 77 (953) T ss_pred EEEEEECCCCEEEEEECEE--CCCEEEEEEECCCCCCCHHHHHHHHHHHHCC-----CCCC------------------- T ss_conf 9999731440689983200--5720024530677652078899999987535-----7998------------------- Q ss_pred HHHHHHHHHHHHHHHCCCC-CCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHH--HHHHHHHHHH--HH Q ss_conf 8655999988987202446-77664300001022178335300247863242677332002256--8999999999--99 Q gi|254780623|r 202 EMDLRLEAAAFSEMAENTV-KDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLE--RLSVTLVQSF--LL 276 (517) Q Consensus 202 ElD~~~Ea~n~~~~~~~~~-~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~--~la~~l~~~~--~~ 276 (517) .-+|...|. ..+ ..+. +=.|||||+-|-+++|+..--. |...+ -+|-++-++. +. T Consensus 78 ----------v~~fYG~f~k~~~--~~~D-------qLWLVMEfCggGSVTDLVKnt~-g~rl~E~~IaYI~~e~l~gl~ 137 (953) T KOG0587 78 ----------VATFYGAFIKKDP--GNGD-------QLWLVMEFCGGGSVTDLVKNTK-GNRLKEEWIAYILREILRGLA 137 (953) T ss_pred ----------CEEEEEEEEEECC--CCCC-------EEEEEEECCCCCCHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH T ss_conf ----------5058889998428--9987-------3799875147961999986530-220136899999999998899 Q ss_pred HHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHH Q ss_conf 8974486617878622898028953574340312169899999 Q gi|254780623|r 277 HTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRF 319 (517) Q Consensus 277 qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~ 319 (517) .+-..-..|-|----||+.+..|++.+.|||.-..++....+- T Consensus 138 HLH~nkviHRDikG~NiLLT~eg~VKLvDFGvSaQldsT~~rR 180 (953) T KOG0587 138 HLHNNKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDSTVGRR 180 (953) T ss_pred HHHCCCEEEECCCCCEEEEECCCCEEEEEEEEEEEEECCCCCC T ss_conf 8750716631256745887426767996211245651111445 No 347 >COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only] Probab=97.29 E-value=0.00081 Score=48.77 Aligned_cols=171 Identities=18% Similarity=0.226 Sum_probs=84.8 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--HHHHHHH------- Q ss_conf 666778888655550212888723687640310-468877778899987532114685433469--1799999------- Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPG-VRKRFFRDIQVMYLIARIQEKLLPSMRRLC--FSAVVRA------- 194 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~-i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~--~~~~~~e------- 194 (517) .+++| +--.||+-...+ |+. ++||-||+ -+..+...+..|..++.---....-....| ....++. T Consensus 32 ~~l~s-~eN~~f~~~~~~---g~~-iLki~~~~~~~~~i~~el~~l~~La~~~i~v~~Pl~~~dG~~l~~~~~~~r~a~l 106 (331) T COG2334 32 RGLNS-EENSNFRVQTED---GRY-ILKIYRPGWTRAEIPFELALLQHLAERGIPVPAPLPSLDGELLEALSGGPRPAAL 106 (331) T ss_pred CCCCC-CCCCEEEEECCC---CCE-EEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCEEEEE T ss_conf 32333-467517887179---976-9998268888777799999999999759988777616785611101478657999 Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH---HCCCHH-CCCCEEEEECCCCCCCCHHHHHHHHCCC Q ss_conf --------9988788865599998898720244677664300---001022-1783353002478632426773320022 Q gi|254780623|r 195 --------LEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVP---KIDWNR-TERDVITMEWIDGVKISDTEKLRACGHD 262 (517) Q Consensus 195 --------~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP---~vy~~~-st~~VLvmE~i~G~~i~d~~~l~~~~~d 262 (517) ... -..+--+..=++.+-++....++.+.-+=+ ...|+. -+..-.--.+ +.+.. +.+ . T Consensus 107 f~~l~G~~~~~-~~~~~~~~~lG~~LgrlH~a~~~f~~~~p~~~~~~~w~~~~~~~~~~~~~-----~~~~~-l~a---~ 176 (331) T COG2334 107 FEYLPGRPLER-DDNAEQLEELGRMLGRLHLALRGFPFERPNALRRLEWDILEPRALLRLDL-----VEPED-LRA---A 176 (331) T ss_pred EEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-----CCCHH-HHH---H T ss_conf 88669967677-88789999999999999997477976588733432201111155665314-----78776-779---9 Q ss_pred HHHHHHHHHHHHHHHHHHCC---EECCCCCCCEEEEECCCC-EEEEECCHHEE Q ss_conf 56899999999999897448---661787862289802895-35743403121 Q gi|254780623|r 263 LERLSVTLVQSFLLHTLRDG---FFHADLHPGNLFVDSKGY-IVAVDMGITGR 311 (517) Q Consensus 263 ~~~la~~l~~~~~~qi~~~G---fFHaDPHpGNi~v~~dg~-i~~lDfG~vg~ 311 (517) -....+.+....- ..+..+ ..|||.||||+++++++. .+++|||-++. T Consensus 177 ~~~~~~~~~~~~~-~~lp~~~~~iIH~D~~~~NVl~d~~~~~~g~iDFdDa~~ 228 (331) T COG2334 177 LLAALDRLLARLP-AHLPALGDQIIHGDLHPDNVLFDDDTDVSGFIDFDDAGY 228 (331) T ss_pred HHHHHHHHHHHCH-HHCCCCCCEEEECCCCCCCEEECCCCCCCEEEECCCCCC T ss_conf 9999999997453-326765554576677603477768987000787611244 No 348 >KOG0593 consensus Probab=97.24 E-value=0.00098 Score=48.11 Aligned_cols=133 Identities=21% Similarity=0.381 Sum_probs=87.1 Q ss_pred HHHHHHHHHHHHHHEECCCCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 667788886555502128887236876403-----104688777788999875321146854334691799999998878 Q gi|254780623|r 126 PIAAASIAQVHPAVVHDINGYRKVAVKIIR-----PGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTK 200 (517) Q Consensus 126 PlasASiaQVh~A~l~d~~~g~~VaVKV~r-----P~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~ 200 (517) -++-+|-|-|++++=+| +|+-||||.-. |-|.++--++++.++.+ +.-++.++++-| T Consensus 9 kvGEGSYGvV~KCrnk~--TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqL-----------kH~NLVnLiEVF----- 70 (396) T KOG0593 9 KVGEGSYGVVMKCRNKD--TGQIVAIKKFVESEDDPVVKKIALREIRMLKQL-----------KHENLVNLIEVF----- 70 (396) T ss_pred CCCCCCCEEEEEECCCC--CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHC-----------CCCHHHHHHHHH----- T ss_conf 02667633789843688--661799875114775578899999999999860-----------550178899999----- Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH- Q ss_conf 8865599998898720244677664300001022178335300247863242677332002256899999999999897- Q gi|254780623|r 201 MEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL- 279 (517) Q Consensus 201 ~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~- 279 (517) |+. . +=-||-||+|-.-+.+++.. ..|.+. ..+..|+.|++ T Consensus 71 ---------------rrk----r-------------klhLVFE~~dhTvL~eLe~~-p~G~~~-----~~vk~~l~Q~l~ 112 (396) T KOG0593 71 ---------------RRK----R-------------KLHLVFEYCDHTVLHELERY-PNGVPS-----ELVKKYLYQLLK 112 (396) T ss_pred ---------------HHC----C-------------EEEEEEEECCHHHHHHHHHC-CCCCCH-----HHHHHHHHHHHH T ss_conf ---------------753----6-------------16998653045789999866-589998-----999999999999 Q ss_pred ------HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf ------44866178786228980289535743403121698 Q gi|254780623|r 280 ------RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 280 ------~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) .++..|-|--|-||+|+..|.+-+-|||....|+. T Consensus 113 ai~~cHk~n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~ 153 (396) T KOG0593 113 AIHFCHKNNCIHRDIKPENILITQNGVVKLCDFGFARTLSA 153 (396) T ss_pred HHHHHHHCCEECCCCCHHHEEEECCCCEEECCCHHHHHHCC T ss_conf 96056535801046773336772378278603035676058 No 349 >KOG0592 consensus Probab=97.22 E-value=0.005 Score=42.65 Aligned_cols=243 Identities=15% Similarity=0.191 Sum_probs=141.1 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH Q ss_conf 88999999867666778888655550212888723687640310468877778899987532114685433469179999 Q gi|254780623|r 114 APIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVR 193 (517) Q Consensus 114 ~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~ 193 (517) +.+.+. .|.+=++-||-.+|++|+=++ ++++.||||.-- + .+.+ ++..+ .. T Consensus 70 k~~~DF--~Fg~~lGeGSYStV~~A~~~~--t~keYAiKVl~K----------~---~Iik--e~Kvk------YV---- 120 (604) T KOG0592 70 KTPNDF--KFGKILGEGSYSTVVLAREKA--TGKEYAIKVLDK----------R---YIIK--EKKVK------YV---- 120 (604) T ss_pred CCCHHC--CHHHEECCCCCEEEEEEEECC--CCCCHHHHHHHH----------H---HHHH--HCCCC------HH---- T ss_conf 681000--110111355321577733236--675222877637----------8---7776--50631------41---- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHHHCC-C---HHHHH Q ss_conf 999887888655999988987202446776643000010221--78335300247863242677332002-2---56899 Q gi|254780623|r 194 ALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRACGH-D---LERLS 267 (517) Q Consensus 194 e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~~~~-d---~~~la 267 (517) .+|-.-+.++. +.|.|. +.|--+- ..=--|+||.++--+-+. ++..|- | -+--| T Consensus 121 ------------~~Ek~~l~~L~----~hPgiv--kLy~TFQD~~sLYFvLe~A~nGdll~~--i~K~Gsfde~caR~YA 180 (604) T KOG0592 121 ------------TREKEALTQLS----GHPGIV--KLYFTFQDEESLYFVLEYAPNGDLLDL--IKKYGSFDETCARFYA 180 (604) T ss_pred ------------HHHHHHHHHHH----CCCCEE--EEEEEEECCCCEEEEEEECCCCCHHHH--HHHHCCCHHHHHHHHH T ss_conf ------------37899999862----799759--999986146625888872478718999--9874650278899999 Q ss_pred HHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCC--------HHHHHHHH Q ss_conf 9999999998974486617878622898028953574340312169899999997669997187--------27899999 Q gi|254780623|r 268 VTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRD--------YQRVADVH 339 (517) Q Consensus 268 ~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D--------~~~~~~~l 339 (517) ..++++ ++-+-..|..|-|.-|-||+++.||++-+-|||....|++.....= .........+ .+=+.--+ T Consensus 181 AeIldA-leylH~~GIIHRDlKPENILLd~dmhikITDFGsAK~l~~~~~~~~-~~~~~~~a~s~~~SFVGTAeYVSPEl 258 (604) T KOG0592 181 AEILDA-LEYLHSNGIIHRDLKPENILLDKDGHIKITDFGSAKILSPSQKSQE-NPVDPNQASSRRSSFVGTAEYVSPEL 258 (604) T ss_pred HHHHHH-HHHHHHCCCEECCCCHHHEEECCCCCEEEEECCCCCCCCHHHCCCC-CCCCCCCCCCCCCCEEEEECCCCHHH T ss_conf 999999-9998746812046773346675888588751555432783341444-76565656676542231001129989 Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH Q ss_conf 9841266778936899999985210013343331135689999975452797128889999999999884 Q gi|254780623|r 340 FEAGYVPRHHNRFSFAQAIRAIGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEG 409 (517) Q Consensus 340 ~~lg~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~~~ll~r~l~~lEG 409 (517) +.-+...+..|.=+|---+.+++.- ..|+...+---.++.++++...++=.+|++..=+++-+++.|- T Consensus 259 L~~~~~~~~sDiWAlGCilyQmlaG--~PPFra~NeyliFqkI~~l~y~fp~~fp~~a~dLv~KLLv~dp 326 (604) T KOG0592 259 LNDSPAGPSSDLWALGCILYQMLAG--QPPFRAANEYLIFQKIQALDYEFPEGFPEDARDLIKKLLVRDP 326 (604) T ss_pred HCCCCCCCCHHHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC T ss_conf 5679888410068999899999638--9987665177999999873244788998899999999870682 No 350 >PRK12396 5-methylribose kinase; Reviewed Probab=97.22 E-value=0.015 Score=38.84 Aligned_cols=63 Identities=22% Similarity=0.495 Sum_probs=48.3 Q ss_pred HHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEE--CCHHEECCHHHHHHHHHHHHHHHCCCHH Q ss_conf 99999999989744866178786228980289535743--4031216989999999766999718727 Q gi|254780623|r 268 VTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVD--MGITGRLSKRERRFLAEILYGFISRDYQ 333 (517) Q Consensus 268 ~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lD--fG~vg~l~~~~r~~l~~l~~a~~~~D~~ 333 (517) ..+-..|+.. -....|||.|.|+||++++ ..-.|| |+-.|-+.=+.-..+++++.|...+++. T Consensus 216 a~LK~~Fmt~--aeaLlHGDLHTGSImv~~~-~tkVIDpEFAFYGPmGFDiG~~iaNlllay~s~~~~ 280 (409) T PRK12396 216 AKLKFSFMTN--AQALIHGDLHTGSVFVKND-STKVIDPEFAFYGPMGYDIGNVMANLMFAWVNADAT 280 (409) T ss_pred HHHHHHHHHC--CHHHHCCCCCCCCEEEECC-CCEEECCHHHCCCCCHHHHHHHHHHHHHHHHCCCCC T ss_conf 9999987520--0244326755675686078-415876203216874100999999999998437332 No 351 >COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms] Probab=97.19 E-value=0.0023 Score=45.24 Aligned_cols=139 Identities=22% Similarity=0.264 Sum_probs=89.7 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) .-+|-|--+-||.+... |.+||+||||++-.. . + T Consensus 28 ~~L~KG~~s~Vyl~~~~----~~~~a~Kvrr~ds~r-------------------------~-----------------~ 61 (201) T COG2112 28 KELAKGTTSVVYLGEWR----GGEVALKVRRRDSPR-------------------------R-----------------N 61 (201) T ss_pred HHHHCCCCCEEEEEECC----CCEEEEEEECCCCCH-------------------------H-----------------H T ss_conf 66434644479985316----854899995278632-------------------------4-----------------5 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEE Q ss_conf 59999889872024467766430000102217833530024786324267733200225689999999999989744866 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFF 284 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfF 284 (517) +..||+-++..+- .-..|+|| +-++..+.|||++|.++.+... +-|++.+-+.+-.+|. +=.-|.= T Consensus 62 l~kEakiLeil~g------~~~~p~vy--~yg~~~i~me~i~G~~L~~~~~----~~~rk~l~~vlE~a~~--LD~~GI~ 127 (201) T COG2112 62 LEKEAKILEILAG------EGVTPEVY--FYGEDFIRMEYIDGRPLGKLEI----GGDRKHLLRVLEKAYK--LDRLGIE 127 (201) T ss_pred HHHHHHHHHHHHH------CCCCCEEE--EECHHHHHHHHHCCCCHHHHHH----CCCHHHHHHHHHHHHH--HHHHCCC T ss_conf 7888999998611------57786599--8310341001205854656651----1168999999999998--8875566 Q ss_pred CCCCCCC--EEEEECCCCEEEEECCHHE--ECCHHHHHHHHHHH Q ss_conf 1787862--2898028953574340312--16989999999766 Q gi|254780623|r 285 HADLHPG--NLFVDSKGYIVAVDMGITG--RLSKRERRFLAEIL 324 (517) Q Consensus 285 HaDPHpG--Ni~v~~dg~i~~lDfG~vg--~l~~~~r~~l~~l~ 324 (517) |+-.|-| |+++ ++++..+|||--.. .-|.+.++.+.-++ T Consensus 128 H~El~~~~k~vlv-~~~~~~iIDFd~At~k~~p~N~Tq~~slL~ 170 (201) T COG2112 128 HGELSRPWKNVLV-NDRDVYIIDFDSATFKKKPRNVTQALSLLF 170 (201) T ss_pred HHHHCCCCEEEEE-CCCCEEEEECCCHHHCCCCCHHHHHHHHHH T ss_conf 3554487326882-699479998251322268711999999987 No 352 >cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n Probab=97.17 E-value=0.014 Score=39.20 Aligned_cols=28 Identities=29% Similarity=0.576 Sum_probs=25.2 Q ss_pred CCCCCCEEEEECCCCEEEEECC-HHEECC Q ss_conf 7878622898028953574340-312169 Q gi|254780623|r 286 ADLHPGNLFVDSKGYIVAVDMG-ITGRLS 313 (517) Q Consensus 286 aDPHpGNi~v~~dg~i~~lDfG-~vg~l~ 313 (517) +|=|.||||++++|.+.=|||| +.|..+ T Consensus 207 gDRHndNIml~~~GhlfHIDFG~~Lg~~~ 235 (353) T cd05176 207 CDRHNDNIMLRSTGHMFHIDFGKFLGHAQ 235 (353) T ss_pred CCCCCCCEEECCCCCEEEEECCCCCCCCC T ss_conf 66678855787998789987640157786 No 353 >KOG0197 consensus Probab=97.16 E-value=0.00079 Score=48.84 Aligned_cols=140 Identities=17% Similarity=0.181 Sum_probs=86.7 Q ss_pred HHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 86766677888865555021288872368764031046887777889998753211468543346917999999988788 Q gi|254780623|r 122 EFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKM 201 (517) Q Consensus 122 ~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 201 (517) .+..-|+++-.|-||.+.++. -.+||||.+++| ... T Consensus 209 ~l~~~LG~G~FG~V~~g~~~~---~~~vavk~ik~~-----------------------------------------~m~ 244 (468) T KOG0197 209 KLIRELGSGQFGEVWLGKWNG---STKVAVKTIKEG-----------------------------------------SMS 244 (468) T ss_pred HHHHHHCCCCCCEEEEEEECC---CCCCCCEEEECC-----------------------------------------CCC T ss_conf 999984677243488878768---776401377435-----------------------------------------558 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC-C--EEEEECCCCCCCCHHHHH-HHHCCCHHHHHHHHHHHHHHH Q ss_conf 865599998898720244677664300001022178-3--353002478632426773-320022568999999999998 Q gi|254780623|r 202 EMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER-D--VITMEWIDGVKISDTEKL-RACGHDLERLSVTLVQSFLLH 277 (517) Q Consensus 202 ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~-~--VLvmE~i~G~~i~d~~~l-~~~~~d~~~la~~l~~~~~~q 277 (517) +-||..||+-|..++... -|. .| .-|+. . -|||||+.--++-|.-.- .....+..++..--.+..--| T Consensus 245 ~~~f~~Ea~iMk~L~H~~----lV~---l~-gV~~~~~piyIVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM 316 (468) T KOG0197 245 PEAFLREAQIMKKLRHEK----LVK---LY-GVCTKQEPIYIVTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGM 316 (468) T ss_pred HHHHHHHHHHHHHCCCCC----EEE---EE-EEEECCCCEEEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHH T ss_conf 467899999998575657----677---99-9991587249999744668299985322777666689999999998788 Q ss_pred --HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf --974486617878622898028953574340312169 Q gi|254780623|r 278 --TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 278 --i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) +=..+|.|=|.-+-||+|+.++..=+=|||+...+. T Consensus 317 ~YLes~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~ 354 (468) T KOG0197 317 AYLESKNYIHRDLAARNILVDEDLVVKISDFGLARLIG 354 (468) T ss_pred HHHHHCCCCCHHHHHHHEEECCCCEEEECCCCCCCCCC T ss_conf 88986781220034665564568669874663552158 No 354 >KOG0578 consensus Probab=97.14 E-value=0.0046 Score=42.93 Aligned_cols=208 Identities=14% Similarity=0.189 Sum_probs=111.8 Q ss_pred HHHHHHCCC--CCCHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHH Q ss_conf 998874887--899899999875404-78899999986766677888865555021288872368764031046887777 Q gi|254780623|r 89 LALLQDKMD--FFPTNTARLSVASAL-KAPIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRD 165 (517) Q Consensus 89 L~~Lqd~vp--p~~~~~v~~~ie~el-g~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~D 165 (517) ..++.|+-. |++-+++...+..-. ..++...|..|. =++.++=|-||-|.-.- +++.||||.. ++..+=+.+ T Consensus 241 ~~~~~d~~~~~~~~~~~~~~~l~~v~~~~dP~~~y~~~~-kigqgaSG~vy~A~~~~--~~~~VaiK~m--~l~~Q~~ke 315 (550) T KOG0578 241 KQQLSDSSAQSIVSKEEILAKLKRVVSQGDPRSKYTDFK-KIGQGATGGVYVARKIS--TKQEVAIKRM--DLRKQPKKE 315 (550) T ss_pred CCCCCCHHCCCCCHHHHHHHHHHEECCCCCHHHHHCCHH-HHCCCCCCCEEEEEECC--CCCEEEEEEE--EECCCCCHH T ss_conf 212684001565208899987531215788224320123-32566666556566626--7745778998--721487122 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEE Q ss_conf 88999875321146854334691799999998878886559999--8898720244677664300001022178335300 Q gi|254780623|r 166 IQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEA--AAFSEMAENTVKDQGFRVPKIDWNRTERDVITME 243 (517) Q Consensus 166 l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea--~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE 243 (517) + +..|+.-.++- .|.-.|-+.|- +..+=..||| T Consensus 316 L--------------------------------ilnEi~Vm~~~~H~NiVnfl~Syl-------------v~deLWVVME 350 (550) T KOG0578 316 L--------------------------------LLNEILVMRDLHHPNIVNFLDSYL-------------VGDELWVVME 350 (550) T ss_pred H--------------------------------HHHHHHHHHHCCCHHHHHHHHHHC-------------CCCCEEEEEE T ss_conf 3--------------------------------577999987466538988777760-------------3560178762 Q ss_pred CCCCCCCCHHHHHHHHCCCHHHHH---HHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHH Q ss_conf 247863242677332002256899---99999999989744866178786228980289535743403121698999999 Q gi|254780623|r 244 WIDGVKISDTEKLRACGHDLERLS---VTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFL 320 (517) Q Consensus 244 ~i~G~~i~d~~~l~~~~~d~~~la---~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l 320 (517) |++|-.++|+...-. .+-.++| +....+ ++-+-..|+.|=|----||+...+|++-+.|||.|..++++.- T Consensus 351 ym~ggsLTDvVt~~~--~~E~qIA~Icre~l~a-L~fLH~~gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~--- 424 (550) T KOG0578 351 YMEGGSLTDVVTKTR--MTEGQIAAICREILQG-LKFLHARGIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQS--- 424 (550) T ss_pred CCCCCCCCHHHHCCC--CCHHHHHHHHHHHHHH-HHHHHHCCEEEECCCCCEEEECCCCCEEEEEEEEEECCCCCCC--- T ss_conf 027774000110121--5578999999999999-9998745604403552127852688578752113311564677--- Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHH Q ss_conf 97669997187278999999841266778936899 Q gi|254780623|r 321 AEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFA 355 (517) Q Consensus 321 ~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~ 355 (517) -.+-.-+-++.++--.+.--...+.+|.=-|- T Consensus 425 ---KR~TmVGTPYWMAPEVvtrk~YG~KVDIWSLG 456 (550) T KOG0578 425 ---KRSTMVGTPYWMAPEVVTRKPYGPKVDIWSLG 456 (550) T ss_pred ---CCCCCCCCCCCCCHHHHHHCCCCCCCCEEEHH T ss_conf ---65644578776576564112467631010044 No 355 >KOG1094 consensus Probab=97.14 E-value=0.00085 Score=48.60 Aligned_cols=202 Identities=20% Similarity=0.215 Sum_probs=122.6 Q ss_pred HHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 67666778888655550212888723687640310468877778899987532114685433469179999999887888 Q gi|254780623|r 123 FDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME 202 (517) Q Consensus 123 fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E 202 (517) |-|-|+.+-.|-||-+.+. ++.+||||..||+..+--+. T Consensus 542 ~~ekiGeGqFGEVhLCeve---g~lkVAVK~Lr~~a~~~~r~-------------------------------------- 580 (807) T KOG1094 542 FKEKIGEGQFGEVHLCEVE---GPLKVAVKILRPDATKNARN-------------------------------------- 580 (807) T ss_pred HHHHHCCCCCCEEEEEEEC---CCEEEEEEECCCCCCHHHHH-------------------------------------- T ss_conf 1344267632305788733---85379875138621046789-------------------------------------- Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC---CCEEEEECCCCCCCCHHHHHH-HHCCCHH---HHHHHHH--HH Q ss_conf 6559999889872024467766430000102217---833530024786324267733-2002256---8999999--99 Q gi|254780623|r 203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE---RDVITMEWIDGVKISDTEKLR-ACGHDLE---RLSVTLV--QS 273 (517) Q Consensus 203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st---~~VLvmE~i~G~~i~d~~~l~-~~~~d~~---~la~~l~--~~ 273 (517) ||..|++-+.+.++ |.|. +++- -|+ +-.++|||++---++..-.-+ +...+-+ .++..+. -+ T Consensus 581 -~F~kEIkiLsqLkh-----PNIv--eLvG-VC~~DePicmI~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgma 651 (807) T KOG1094 581 -DFLKEIKILSRLKH-----PNIV--ELLG-VCVQDDPLCMITEYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMA 651 (807) T ss_pred -HHHHHHHHHHCCCC-----CCEE--EEEE-EEECCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH T ss_conf -99999999861489-----9856--7886-5414773677777775370999997525863123216799999998999 Q ss_pred HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHH-----------HHHHHHHH Q ss_conf 9998974486617878622898028953574340312169899999997669997187278-----------99999984 Q gi|254780623|r 274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQR-----------VADVHFEA 342 (517) Q Consensus 274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~-----------~~~~l~~l 342 (517) |+. --+|.|.|.-+-|.+|+.++.+-+-||||...|- .+|+.+ ++=.-+-+ T Consensus 652 YLe---s~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~ly---------------sg~yy~vqgr~vlpiRwmawEsill 713 (807) T KOG1094 652 YLE---SLNFVHRDLATRNCLVDGEFTIKIADFGMSRNLY---------------SGDYYRVQGRAVLPIRWMAWESILL 713 (807) T ss_pred HHH---HHCHHHCCCCCCCEEECCCCCEEECCCCCCCCCC---------------CCCCEEEECCEEEEEEEHHHHHHHH T ss_conf 997---6222311453003566475307964765323345---------------6873354121441143124788975 Q ss_pred HCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCC Q ss_conf 12667789368999999852100133433311356899999754527971 Q gi|254780623|r 343 GYVPRHHNRFSFAQAIRAIGEPIHGQSSDVISMGKLLTMLFEITELFDMM 392 (517) Q Consensus 343 g~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 392 (517) |--+...|.=.|--.+-+++-....+|.+++.=.+++....+..+..+.+ T Consensus 714 gkFttaSDvWafgvTlwE~~~~C~e~Py~~ltdeqvveN~~~~~~~q~~~ 763 (807) T KOG1094 714 GKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQVVENAGEFFRDQGRQ 763 (807) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 66652233556678899999998618654532788987565423799853 No 356 >cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not Probab=97.12 E-value=0.019 Score=38.21 Aligned_cols=28 Identities=25% Similarity=0.577 Sum_probs=25.4 Q ss_pred CCCCCCEEEEECCCCEEEEECC-HHEECC Q ss_conf 7878622898028953574340-312169 Q gi|254780623|r 286 ADLHPGNLFVDSKGYIVAVDMG-ITGRLS 313 (517) Q Consensus 286 aDPHpGNi~v~~dg~i~~lDfG-~vg~l~ 313 (517) +|=|.||||++++|++.=|||| +.|..+ T Consensus 208 gDRHndNIml~~~GhlfHIDFG~iLg~~~ 236 (354) T cd00895 208 CDRHNDNIMLKTTGHMFHIDFGRFLGHAQ 236 (354) T ss_pred CCCCCCCEEECCCCCEEEEEHHHHHCCCC T ss_conf 56687845787999889873345533687 No 357 >cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes. ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo Probab=97.08 E-value=0.0039 Score=43.45 Aligned_cols=179 Identities=17% Similarity=0.183 Sum_probs=77.1 Q ss_pred HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHH--HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH-HHHH Q ss_conf 6677888865555021288872368764031046887777--889998753211468543346917999999988-7888 Q gi|254780623|r 126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRD--IQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV-TKME 202 (517) Q Consensus 126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~D--l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-l~~E 202 (517) ||..|--=|+|+.+..+++ ++.|+|+|=-+|.+..|.++ ..+++.++.. .+.|..-.......++||-.. .... T Consensus 5 ~l~GGlTN~~y~v~~~~~~-~~~~v~Ri~G~~te~~IdR~~E~~~~~~l~~~--gl~p~l~~~f~~grieefi~g~~l~~ 81 (235) T cd05157 5 RFTGGITNKLVKVSNKEDN-QDAVLVRVYGNKTELIIDRERELRIHKLLSKH--GLAPKLYATFQNGLIYEFIPGRTLEP 81 (235) T ss_pred ECCCCCCCCEEEEEECCCC-CCEEEEEECCCCCCCEECHHHHHHHHHHHHHC--CCCCCEEEECCCCEEEEEECCCCCCH T ss_conf 8278536742899865899-87899993889867347789999999999985--99971899759977999777855996 Q ss_pred HH------HHHHHHHHHHHHCCCCC----CCCCCCHHCCCHHCCCCEEEEECCCCCCC--CHHHH-HH-HHCCCHHHHHH Q ss_conf 65------59999889872024467----76643000010221783353002478632--42677-33-20022568999 Q gi|254780623|r 203 MD------LRLEAAAFSEMAENTVK----DQGFRVPKIDWNRTERDVITMEWIDGVKI--SDTEK-LR-ACGHDLERLSV 268 (517) Q Consensus 203 lD------~~~Ea~n~~~~~~~~~~----~~~v~vP~vy~~~st~~VLvmE~i~G~~i--~d~~~-l~-~~~~d~~~la~ 268 (517) -| ...=|+.+.+|+..--. ...-..|.++.... .|+.-.+- .+... .. ....+...+.. T Consensus 82 ~d~~~~~~~~~IA~~l~~lH~~~~~~~~~~~~~~~~~~~~~i~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 154 (235) T cd05157 82 EDLRNPKIYRLIARELAKLHSIKPPEAISSPGTPKPILWPTIR-------KWINLVPTEFKKPEKFQKKTKAISFEQLRD 154 (235) T ss_pred HHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH-------HHHHHHHHHHHHHHHHHCCCCCCHHHHHHH T ss_conf 7800948999999999998647675664334566452899999-------999985765300565512001221999999 Q ss_pred H---HHHHHHHHHHHCCEECCCCCCCEEEEE-CCCCEEEEECCHHEECCH Q ss_conf 9---999999989744866178786228980-289535743403121698 Q gi|254780623|r 269 T---LVQSFLLHTLRDGFFHADLHPGNLFVD-SKGYIVAVDMGITGRLSK 314 (517) Q Consensus 269 ~---l~~~~~~qi~~~GfFHaDPHpGNi~v~-~dg~i~~lDfG~vg~l~~ 314 (517) . +.+..-..-..-.|=|-|+.||||++. .++++.+|||=-.|.=++ T Consensus 155 ~~~~l~~~l~~~~~~~v~CHNDL~~~Nil~~~~~~~l~lIDfEYag~N~~ 204 (235) T cd05157 155 EISWLKELLSALNSPIVFCHNDLLSGNIIYNEEKNSVKFIDYEYAGYNYR 204 (235) T ss_pred HHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCEEEEEECCCCCCCH T ss_conf 99999999734699802444668745467617999589997788888831 No 358 >KOG0663 consensus Probab=97.06 E-value=0.0016 Score=46.45 Aligned_cols=143 Identities=19% Similarity=0.256 Sum_probs=84.9 Q ss_pred HHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 867--666778888655550212888723687640310468877778899987532114685433469179999999887 Q gi|254780623|r 122 EFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT 199 (517) Q Consensus 122 ~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 199 (517) +|+ .-|+.+|-|-||||+=+ .+++-||.|=.++.- ....+.+ +- T Consensus 77 efe~lnrI~EGtyGiVYRakdk--~t~eIVALKr~kmek-----------------------ek~GFPI---------ts 122 (419) T KOG0663 77 EFEKLNRIEEGTYGVVYRAKDK--KTDEIVALKRLKMEK-----------------------EKEGFPI---------TS 122 (419) T ss_pred HHHHHHHCCCCCCEEEEEECCC--CCCEEEEEEECCCCC-----------------------CCCCCCC---------HH T ss_conf 9888761056752368872257--766068864035564-----------------------5578760---------66 Q ss_pred HHHHHHHHHHHHHHHHH-CCCCCCCCCCCHHCCCHHCCC-CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 88865599998898720-244677664300001022178-3353002478632426773320022568999999999998 Q gi|254780623|r 200 KMEMDLRLEAAAFSEMA-ENTVKDQGFRVPKIDWNRTER-DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH 277 (517) Q Consensus 200 ~~ElD~~~Ea~n~~~~~-~~~~~~~~v~vP~vy~~~st~-~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q 277 (517) ++|++. +.+.+ .|. |.|-+|.-.-+-. --+||||++- |+..+-..- ++.....-+++.+.| T Consensus 123 LREIni------Ll~~~H~NI-----V~vkEVVvG~~~d~iy~VMe~~Eh----DLksl~d~m--~q~F~~~evK~L~~Q 185 (419) T KOG0663 123 LREINI------LLKARHPNI-----VEVKEVVVGSNMDKIYIVMEYVEH----DLKSLMETM--KQPFLPGEVKTLMLQ 185 (419) T ss_pred HHHHHH------HHHCCCCCE-----EEEEEEEECCCCCEEEEEHHHHHH----HHHHHHHHC--CCCCCHHHHHHHHHH T ss_conf 999999------985389773-----356788842554516665887776----699999844--577756889999999 Q ss_pred H-------HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 9-------7448661787862289802895357434031216989 Q gi|254780623|r 278 T-------LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 278 i-------~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) + -..+..|-|.-|.|++.+.+|-|-+-|||+......- T Consensus 186 lL~glk~lH~~wilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp 230 (419) T KOG0663 186 LLRGLKHLHDNWILHRDLKTSNLLLSHKGILKIADFGLAREYGSP 230 (419) T ss_pred HHHHHHHHHHCEEEECCCCHHHEEECCCCCEEECCCCCHHHHCCC T ss_conf 999999886460574256431222116884776143203432587 No 359 >PRK06149 hypothetical protein; Provisional Probab=97.06 E-value=0.0037 Score=43.65 Aligned_cols=157 Identities=13% Similarity=0.100 Sum_probs=86.2 Q ss_pred CCCCCCHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHH-HHHHHHHHHHH Q ss_conf 887899899999875404788--999999867666778888655550212888723687640310468-87777889998 Q gi|254780623|r 95 KMDFFPTNTARLSVASALKAP--IEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRK-RFFRDIQVMYL 171 (517) Q Consensus 95 ~vpp~~~~~v~~~ie~elg~~--~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~-~i~~Dl~~l~~ 171 (517) -.|.++-+++.+++++.+|-. +..+-++-| |=++.+-. .| +-|+||-+|+=.. .++.-..+|.. T Consensus 13 p~P~~S~~eA~~ll~~~yGi~g~l~~L~sErD---------~NF~v~~~---~g-~yVLKI~n~~e~~~~ld~Q~~aL~H 79 (972) T PRK06149 13 PRPDVSEAQAQEILAQHYGLSGTLASLGSQQD---------RNFRVDTD---RG-RFVLKICHGAYTTVELEAQHAALRH 79 (972) T ss_pred CCCCCCHHHHHHHHHHHCCCEEEEEECCCCCC---------CCEEEECC---CC-CEEEEECCCCCCHHHHHHHHHHHHH T ss_conf 86999999999999986798799851786015---------12579818---98-7899962788987899999999999 Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC------------CE Q ss_conf 753211468543346917999999988788865599998898720244677664300001022178------------33 Q gi|254780623|r 172 IARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER------------DV 239 (517) Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~------------~V 239 (517) ++.. .+.+.+|+|.+..+++ .| T Consensus 80 La~~----------------------------------------------~~~l~vP~vi~t~~G~~~~~~~~~g~~~~v 113 (972) T PRK06149 80 LAEA----------------------------------------------EPALRVPVVIPANDGEELLTLDVRGQGLHV 113 (972) T ss_pred HHHC----------------------------------------------CCCCCCCEEEECCCCCEEEEEECCCCEEEE T ss_conf 9836----------------------------------------------999989977536999857999648977999 Q ss_pred EEEECCCCCCCCHHHH---------------------------------------------HHH--HCCCHHHHHHHHHH Q ss_conf 5300247863242677---------------------------------------------332--00225689999999 Q gi|254780623|r 240 ITMEWIDGVKISDTEK---------------------------------------------LRA--CGHDLERLSVTLVQ 272 (517) Q Consensus 240 LvmE~i~G~~i~d~~~---------------------------------------------l~~--~~~d~~~la~~l~~ 272 (517) =+++|++|.++++... +.. ...+++++.+..+. T Consensus 114 RLlsyl~G~~l~~~~~~s~~l~~~LG~~lg~l~~AL~~F~HP~~~R~~~WDl~~a~~~~~~ll~~I~D~~~R~~i~~~l~ 193 (972) T PRK06149 114 RLLEYLEGQPLTRLGHLAPASVAGLGALCARVDRALADFDHPGLDRTLQWDLRHAGAVIDHLLPHVADPAQRDRIAEATR 193 (972) T ss_pred EEEEEECCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99980098743448889989999999999999998657988776787560701118999999886399999999999999 Q ss_pred HHHHH------HHHCCEECCCCCCCEEEEECCC----CE-EEEECCHHE Q ss_conf 99998------9744866178786228980289----53-574340312 Q gi|254780623|r 273 SFLLH------TLRDGFFHADLHPGNLFVDSKG----YI-VAVDMGITG 310 (517) Q Consensus 273 ~~~~q------i~~~GfFHaDPHpGNi~v~~dg----~i-~~lDfG~vg 310 (517) .|.+. -+..+..|.|+..=||+|++|+ ++ .+||||=+. T Consensus 194 ~f~~~v~P~l~~Lr~qvIHND~ND~NIlV~~d~~~~~~vsGIIDFGD~~ 242 (972) T PRK06149 194 DAVRRLQPLADALPLQAVHLDITDDNVVWSRDAGGQWQPDGVIDFGDLT 242 (972) T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEHHHHH T ss_conf 9999741545538623254788645578506888873045576535545 No 360 >KOG1187 consensus Probab=97.03 E-value=0.00053 Score=50.18 Aligned_cols=183 Identities=14% Similarity=0.176 Sum_probs=109.9 Q ss_pred HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 9867--66677888865555021288872368764031046887777889998753211468543346917999999988 Q gi|254780623|r 121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV 198 (517) Q Consensus 121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 198 (517) ..|+ .=++.+.-|-||+|.|.| |..||||...++... . T Consensus 75 ~~Fs~~~~ig~Ggfg~VYkG~l~~---~~~vAVK~~~~~~~~-------------------------------------~ 114 (361) T KOG1187 75 NNFSESNLIGEGGFGTVYKGVLSD---GTVVAVKRLSSNSGQ-------------------------------------G 114 (361) T ss_pred HCCCHHHEEEECCCEEEEEEEECC---CEEEEEEEECCCCCC-------------------------------------C T ss_conf 367731139945887789999689---808999982466774-------------------------------------3 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC----CCEEEEECCCCCCCCHHHHHHHH-CC---CHHHHHHHH Q ss_conf 78886559999889872024467766430000102217----83353002478632426773320-02---256899999 Q gi|254780623|r 199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE----RDVITMEWIDGVKISDTEKLRAC-GH---DLERLSVTL 270 (517) Q Consensus 199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st----~~VLvmE~i~G~~i~d~~~l~~~-~~---d~~~la~~l 270 (517) +-+|.+|...+.+++. ++. |.. -.||. .++||-||+..-++.|.-..... .. .|-++|--. T Consensus 115 ---~~eF~~Ev~~ls~l~H--~Nl--v~L----lGyC~e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~ 183 (361) T KOG1187 115 ---EREFLNEVEILSRLRH--PNL--VKL----LGYCLEGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGA 183 (361) T ss_pred ---HHHHHHHHHHHHCCCC--CCC--CCE----EEEEECCCCCEEEEEECCCCCCHHHHHCCCCCCCCCHHHHHHHHHHH T ss_conf ---3879999999843898--684--538----88881699815899956899988998557888898989999999999 Q ss_pred HH--HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC Q ss_conf 99--999989744866178786228980289535743403121698-999999976699971872789999998412667 Q gi|254780623|r 271 VQ--SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK-RERRFLAEILYGFISRDYQRVADVHFEAGYVPR 347 (517) Q Consensus 271 ~~--~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~-~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~ 347 (517) ++ .|++.-..--+.|.|--|.||+++.|..--+-|||+....+. ....... . .+...-++-.....|.++. T Consensus 184 A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~~~~~~~~~~-~-----~gt~gY~~PEy~~~g~lt~ 257 (361) T KOG1187 184 ARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKLGPEGDTSVSTT-V-----MGTFGYLAPEYASTGKLTE 257 (361) T ss_pred HHHHHHHCCCCCCCEEECCCCHHHEEECCCCCEEECCCCCCCCCCCCCCCEEEE-C-----CCCCCCCCHHHHHHCCCCC T ss_conf 889998726899987879778999607889976836565650267555401343-2-----6756715877861378774 Q ss_pred CCCHHHHHHHHHH Q ss_conf 7893689999998 Q gi|254780623|r 348 HHNRFSFAQAIRA 360 (517) Q Consensus 348 ~~d~~~~~~~i~~ 360 (517) ..|...|---+-+ T Consensus 258 KsDVySFGVvllE 270 (361) T KOG1187 258 KSDVYSFGVVLLE 270 (361) T ss_pred CCCEECCCHHHHH T ss_conf 1643626589999 No 361 >cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin Probab=97.00 E-value=0.043 Score=35.38 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=23.4 Q ss_pred CCCCCCCEEEEECCCCEEEEECCHH Q ss_conf 1787862289802895357434031 Q gi|254780623|r 285 HADLHPGNLFVDSKGYIVAVDMGIT 309 (517) Q Consensus 285 HaDPHpGNi~v~~dg~i~~lDfG~v 309 (517) =+|=|.||||++++|+++=||||.+ T Consensus 206 igDRH~~NImi~~~G~l~HIDFG~~ 230 (350) T cd00896 206 VGDRHLDNLLLTKDGKLFHIDFGYI 230 (350) T ss_pred CCCCCCCCEEECCCCCEEEEEEHHH T ss_conf 6775767456999998899841344 No 362 >cd05153 HomoserineK_II Homoserine Kinase, type II. Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine. Probab=96.96 E-value=0.0036 Score=43.74 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=27.3 Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 744866178786228980289535743403121 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) +-.|..|||++|.|+++..|.-.++|||..++. T Consensus 173 LP~GiIHgDLF~DNVlF~~d~vsGiIDFy~ac~ 205 (296) T cd05153 173 LPRGVIHADLFRDNVLFDGDELSGVIDFYFACT 205 (296) T ss_pred CCCCCCCCCCCCCCEEEECCCCEEEECHHHHCC T ss_conf 886553243342334450687402313454143 No 363 >KOG4721 consensus Probab=96.96 E-value=0.016 Score=38.70 Aligned_cols=235 Identities=18% Similarity=0.182 Sum_probs=136.0 Q ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCH Q ss_conf 598899999998874887899899999875404788999999867--666778888655550212888723687640310 Q gi|254780623|r 80 LIGKKLSEDLALLQDKMDFFPTNTARLSVASALKAPIEELYCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPG 157 (517) Q Consensus 80 llp~~~~~eL~~Lqd~vpp~~~~~v~~~ie~elg~~~~~~F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~ 157 (517) ++...|..|.++-|+..=-+||+ ++. |=++|++=|-|.+++|+ ++.|||| . T Consensus 102 ~iGk~~s~e~k~qq~e~WeiPFe-------------------~IsELeWlGSGaQGAVF~Grl~----netVAVK----K 154 (904) T KOG4721 102 MIGKAYSTEHKQQQEELWEIPFE-------------------EISELEWLGSGAQGAVFLGRLH----NETVAVK----K 154 (904) T ss_pred HHCCCEEEEHHHHHHHHCCCCHH-------------------HHHHHHHHCCCCCCCEEEEECC----CCEEHHH----H T ss_conf 72540223213211120037788-------------------8645554236766415630014----7340267----7 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC Q ss_conf 46887777889998753211468543346917999999988788865599998898720244677664300001022178 Q gi|254780623|r 158 VRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER 237 (517) Q Consensus 158 i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~ 237 (517) |++.=++|++-|+.+- . | |+.. |+ . .||+ T Consensus 155 V~elkETdIKHLRkLk-----H-~-----------------------------NII~----Fk---G---------VCtq 183 (904) T KOG4721 155 VRELKETDIKHLRKLK-----H-P-----------------------------NIIT----FK---G---------VCTQ 183 (904) T ss_pred HHHHHHHHHHHHHHCC-----C-C-----------------------------CEEE----EE---E---------EECC T ss_conf 7664055688987536-----8-6-----------------------------6036----74---2---------1227 Q ss_pred ---CEEEEECCCCCCCCHHHHHHHHC-CCHHHHHH--HHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf ---33530024786324267733200-22568999--9999999989744866178786228980289535743403121 Q gi|254780623|r 238 ---DVITMEWIDGVKISDTEKLRACG-HDLERLSV--TLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 238 ---~VLvmE~i~G~~i~d~~~l~~~~-~d~~~la~--~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) -+++|||+.--.+-.+ |++.. +.+..++. +++-.-+.-+-.+.++|-|...-||+|+.+..+-+-|||--.+ T Consensus 184 sPcyCIiMEfCa~GqL~~V--Lka~~~itp~llv~Wsk~IA~GM~YLH~hKIIHRDLKSPNiLIs~~d~VKIsDFGTS~e 261 (904) T KOG4721 184 SPCYCIIMEFCAQGQLYEV--LKAGRPITPSLLVDWSKGIAGGMNYLHLHKIIHRDLKSPNILISYDDVVKISDFGTSKE 261 (904) T ss_pred CCEEEEEEECCCCCCHHHH--HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEECCCCCHHH T ss_conf 9655886201366508999--86268568899999998764256788776676620589866765165277404653476 Q ss_pred CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH---HCCCCCHHHCCHHHHHHHHHHHHHH Q ss_conf 6989999999766999718727899999984126677893689999998521---0013343331135689999975452 Q gi|254780623|r 312 LSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRAIGE---PIHGQSSDVISMGKLLTMLFEITEL 388 (517) Q Consensus 312 l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~ 388 (517) +++.- .+|-. .+-...++--++.---..+.+|.-.|---+-+++. +|.+.+..-+-+|.- ...+. -- T Consensus 262 ~~~~S----TkMSF---aGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdssAIIwGVG-sNsL~--Lp 331 (904) T KOG4721 262 LSDKS----TKMSF---AGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSSAIIWGVG-SNSLH--LP 331 (904) T ss_pred HHHHH----HHHHH---HHHHHHHCHHHHHCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCHHEEEEECC-CCCCC--CC T ss_conf 65545----45331---32475417787616876431132113789999983677744333120577315-77231--65 Q ss_pred CCCCCCHHHHHHHHHH Q ss_conf 7971288899999999 Q gi|254780623|r 389 FDMMTRPELVMLQKTM 404 (517) Q Consensus 389 ~~~~~P~~~~ll~r~l 404 (517) .+-..|..|.+++|.- T Consensus 332 vPstcP~GfklL~Kqc 347 (904) T KOG4721 332 VPSTCPDGFKLLLKQC 347 (904) T ss_pred CCCCCCHHHHHHHHHH T ss_conf 8665840899999998 No 364 >KOG0596 consensus Probab=96.91 E-value=0.0039 Score=43.43 Aligned_cols=163 Identities=17% Similarity=0.221 Sum_probs=90.0 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHH-HHHHCCCHHHHHHHHHHHHHHHHH-- Q ss_conf 5999988987202446776643000010221783--35300247863242677-332002256899999999999897-- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEK-LRACGHDLERLSVTLVQSFLLHTL-- 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~-l~~~~~d~~~la~~l~~~~~~qi~-- 279 (517) |.+|..-+.+++.+ ..|=..|+---|+. -+||||=+ .|+.. +...+..... -.++.|.+|++ T Consensus 406 y~nEI~lL~KLkg~------~~IIqL~DYEv~d~~lYmvmE~Gd----~DL~kiL~k~~~~~~~---~~lk~ywkqML~a 472 (677) T KOG0596 406 YRNEIALLNKLKGH------DKIIQLYDYEVTDGYLYMVMECGD----IDLNKILKKKKSIDPD---WFLKFYWKQMLLA 472 (677) T ss_pred HHHHHHHHHHHCCC------CEEEEEEEEECCCCEEEEEEECCC----CCHHHHHHHCCCCCCH---HHHHHHHHHHHHH T ss_conf 98899999984487------417988533504755888751165----5499999755688841---7999999999999 Q ss_pred -----HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--------- Q ss_conf -----448661787862289802895357434031216989999999766999718727899999984126--------- Q gi|254780623|r 280 -----RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYV--------- 345 (517) Q Consensus 280 -----~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~--------- 345 (517) .+|..|+|.-|.|+++ -+|++-+||||+...+.+++...+.+=-.+- -+ +..-+|+.++... T Consensus 473 V~~IH~~gIVHSDLKPANFLl-VkG~LKLIDFGIA~aI~~DTTsI~kdsQvGT--~N-YMsPEAl~~~~s~~~~~~~k~K 548 (677) T KOG0596 473 VKTIHQHGIVHSDLKPANFLL-VKGRLKLIDFGIANAIQPDTTSIVKDSQVGT--VN-YMSPEALTDMSSSRENGKSKIK 548 (677) T ss_pred HHHHHHHCEEECCCCCCCEEE-EEEEEEEEEECHHCCCCCCCCCEEECCCCCC--CC-CCCHHHHHHCCCCCCCCCCCEE T ss_conf 999987230004777531788-8324776640111136766521212110575--45-5698887402433337886400 Q ss_pred -CCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHH Q ss_conf -6778936899999985210013343331135689999975452 Q gi|254780623|r 346 -PRHHNRFSFAQAIRAIGEPIHGQSSDVISMGKLLTMLFEITEL 388 (517) Q Consensus 346 -~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 388 (517) .+..|.=.+---+..++ |...|++++ ...+..+..+..- T Consensus 549 i~r~SDvWSLGCILYqMv--YgktPf~~~--~n~~aKl~aI~~P 588 (677) T KOG0596 549 ISRKSDVWSLGCILYQMV--YGKTPFGQI--INQIAKLHAITDP 588 (677) T ss_pred ECCCCCHHHHHHHHHHHH--HCCCCHHHH--HHHHHHHHHHCCC T ss_conf 367311033556999998--569956777--8899988742589 No 365 >KOG0588 consensus Probab=96.87 E-value=0.00073 Score=49.08 Aligned_cols=135 Identities=21% Similarity=0.219 Sum_probs=80.6 Q ss_pred HHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 76667788886555502128887236876403104688777788999875321146854334691799999998878886 Q gi|254780623|r 124 DDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM 203 (517) Q Consensus 124 dePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El 203 (517) .+-++.||-|.|-.|+=. .+|+.+||||.--.. . .+.. .+.. + T Consensus 17 gkTLG~Gstg~vrlakh~--~TGqlaaiKii~k~~-------------------~-~s~s---~~~~--------I---- 59 (786) T KOG0588 17 GKTLGKGSTGCVRLAKHA--ETGQLAAIKIIPKRS-------------------E-LSSS---QPAG--------I---- 59 (786) T ss_pred CCCCCCCCCCEEHHHHCC--CCCCEEEEEEECCCC-------------------C-CCCC---CCCC--------H---- T ss_conf 022268987602233214--556546899612534-------------------5-6632---2000--------1---- Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH-- Q ss_conf 55999988987202446776643000010221--78335300247863242677332002256899999999999897-- Q gi|254780623|r 204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL-- 279 (517) Q Consensus 204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~-- 279 (517) .+|..-|+.+.. |.| =..|+.+. +.=-||.||++|--+-|.-. ..| .+.++=..-||+||+ T Consensus 60 --erEIviMkLi~H-----pnV--l~LydVwe~~~~lylvlEyv~gGELFdylv--~kG----~l~e~eaa~ff~QIi~g 124 (786) T KOG0588 60 --EREIVIMKLIEH-----PNV--LRLYDVWENKQHLYLVLEYVPGGELFDYLV--RKG----PLPEREAAHFFRQILDG 124 (786) T ss_pred --HHHHHHHHHHCC-----CCE--EEEEEEECCCCEEEEEEEECCCCHHHHHHH--HHC----CCCCHHHHHHHHHHHHH T ss_conf --245488777427-----771--256542105735799999637851678998--608----98878999999999998 Q ss_pred -----HCCEECCCCCCCEEEEECCCCEEEEECCHHE Q ss_conf -----4486617878622898028953574340312 Q gi|254780623|r 280 -----RDGFFHADLHPGNLFVDSKGYIVAVDMGITG 310 (517) Q Consensus 280 -----~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg 310 (517) ..++-|-|.-|-|++++..++|-+-||||.. T Consensus 125 v~yCH~~~icHRDLKpENlLLd~~~nIKIADFGMAs 160 (786) T KOG0588 125 VSYCHAFNICHRDLKPENLLLDVKNNIKIADFGMAS 160 (786) T ss_pred HHHHHHHCCEECCCCCHHHHHHCCCCEEEECCCEEE T ss_conf 988865050214577244322022677654043241 No 366 >cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n Probab=96.81 E-value=0.056 Score=34.52 Aligned_cols=28 Identities=25% Similarity=0.551 Sum_probs=25.2 Q ss_pred CCCCCCEEEEECCCCEEEEECC-HHEECC Q ss_conf 7878622898028953574340-312169 Q gi|254780623|r 286 ADLHPGNLFVDSKGYIVAVDMG-ITGRLS 313 (517) Q Consensus 286 aDPHpGNi~v~~dg~i~~lDfG-~vg~l~ 313 (517) +|=|.||||++++|++.=|||| +.|..+ T Consensus 208 gDRHndNIml~~~GhlfHIDFG~iLG~~~ 236 (354) T cd05177 208 CDRHNDNIMLTHSGHMFHIDFGKFLGHAQ 236 (354) T ss_pred CCCCCCCEEECCCCCEEEEEHHHHCCCCC T ss_conf 66577855798998789985035406776 No 367 >KOG2269 consensus Probab=96.79 E-value=0.034 Score=36.14 Aligned_cols=137 Identities=18% Similarity=0.254 Sum_probs=84.1 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCC---C Q ss_conf 6917999999988788865599998898720244677664300001022178335300247863242677332002---2 Q gi|254780623|r 186 LCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGH---D 262 (517) Q Consensus 186 ~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~---d 262 (517) .++..++.-++ ..|-.|+.|+.+ .++-+|.|. .--++||||.||-..-+.. ..|+.... . T Consensus 322 ~NpR~i~~mWA---------EkEmhNL~RMq~-----~GlpcP~vV--~lkkhvLVMsFiGd~~~aA-PkLK~v~l~d~E 384 (531) T KOG2269 322 QNPRGILKMWA---------EKEMHNLSRMQK-----HGLPCPQVV--KLKKHVLVMSFIGDQGLAA-PKLKNVELTDDE 384 (531) T ss_pred CCCHHHHHHHH---------HHHHHHHHHHHH-----CCCCCCCEE--EEECCEEEEEEECCCCCCC-CCCCCCCCCHHH T ss_conf 48178999989---------999887999986-----399999624--4640168888644777777-421235258688 Q ss_pred HHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 56899999999999897448661787862289802895357434031216989999999766999718727899999984 Q gi|254780623|r 263 LERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEA 342 (517) Q Consensus 263 ~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~l 342 (517) ++..-.....+..+..-+.-..|||.--=|++..+ |++.+||-... +.+..-.+|- +..+|...++..+... T Consensus 385 ~~~aY~q~~~~M~~lY~Ec~LVHADlSEyN~Lw~~-gKvw~IDVsQs--vep~HP~~Le-----FL~RDc~Ni~~FF~r~ 456 (531) T KOG2269 385 RRNAYDQVQSIMCRLYKECLLVHADLSEYNLLWTP-GKVWVIDVSQS--VEPSHPRSLE-----FLTRDCQNIITFFTRI 456 (531) T ss_pred HHHHHHHHHHHHHHHHHHHHEEECCHHHHHHEECC-CCEEEEECHHC--CCCCCCCHHH-----HHHHHHHHHHHHHHHC T ss_conf 98799999999999987665111345554131227-81699961001--5889961459-----9998877899999844 Q ss_pred HCCCC Q ss_conf 12667 Q gi|254780623|r 343 GYVPR 347 (517) Q Consensus 343 g~~~~ 347 (517) |...- T Consensus 457 G~pn~ 461 (531) T KOG2269 457 GTPNL 461 (531) T ss_pred CCCCC T ss_conf 88775 No 368 >KOG0616 consensus Probab=96.75 E-value=0.0098 Score=40.35 Aligned_cols=230 Identities=18% Similarity=0.181 Sum_probs=127.2 Q ss_pred HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 99867--6667788886555502128887236876403104688777788999875321146854334691799999998 Q gi|254780623|r 120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ 197 (517) Q Consensus 120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 197 (517) ...|+ .-++.+|.|-||-.+.+. +|.--|.||.--. ++++ |+.+ + T Consensus 43 l~dfe~~~tlGtGSFGrV~LVr~k~--~~~yYAmKvL~k~--~vVk-----lKQv----e-------------------- 89 (355) T KOG0616 43 LQDFERLKTLGTGSFGRVHLVREKH--SGNYYAMKVLDKQ--KVVK-----LKQV----E-------------------- 89 (355) T ss_pred HHHHEEEEEECCCCCCEEEEEEECC--CCCEEEHHHCCHH--HHHH-----HHHH----H-------------------- T ss_conf 4442001344047642589998717--8846522231778--7787-----9999----9-------------------- Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCC-CHHCCC-CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 8788865599998898720244677664300001-022178-33530024786324267733200225689999999999 Q gi|254780623|r 198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKID-WNRTER-DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFL 275 (517) Q Consensus 198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy-~~~st~-~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~ 275 (517) .+ .+|-+-+.... .|.+. +.| -..+.. =-+||||++|-.+-.. ++..+ +..+..+++|. T Consensus 90 H~------~nEk~vL~~v~-----~PFlv--~l~~t~kd~~~lymvmeyv~GGElFS~--Lrk~~----rF~e~~arFYA 150 (355) T KOG0616 90 HT------HNEKRVLKAVS-----HPFLV--KLYGTFKDNSNLYMVMEYVPGGELFSY--LRKSG----RFSEPHARFYA 150 (355) T ss_pred HH------HHHHHHHHHCC-----CCEEE--EEEEEECCCCEEEEEEECCCCCHHHHH--HHHCC----CCCCHHHHHHH T ss_conf 77------61898975404-----87377--887864137778999833787408999--97516----88854677889 Q ss_pred HHH-------HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC Q ss_conf 989-------7448661787862289802895357434031216989999999766999718727899999984126677 Q gi|254780623|r 276 LHT-------LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRH 348 (517) Q Consensus 276 ~qi-------~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~ 348 (517) .|+ -..+...-|.-|-||+++.+|-|-+.|||...+++..+.. + + +.++=++--.+..--.... T Consensus 151 AeivlAleylH~~~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~rT~T-l------C--GTPeYLAPEii~sk~ynka 221 (355) T KOG0616 151 AEIVLALEYLHSLDIIYRDLKPENLLLDQNGHIKITDFGFAKRVSGRTWT-L------C--GTPEYLAPEIIQSKGYNKA 221 (355) T ss_pred HHHHHHHHHHHHCCEEECCCCHHHEEECCCCCEEEEECCCEEEECCCEEE-E------C--CCCCCCCHHHHHCCCCCCC T ss_conf 99999999987467364368877745446786788743634885686787-4------2--8810037266505888850 Q ss_pred CCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 8936899999985210013343331135689999975452797128889999999999884998 Q gi|254780623|r 349 HNRFSFAQAIRAIGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVAR 412 (517) Q Consensus 349 ~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~~~ll~r~l~~lEG~~~ 412 (517) +|==.|---|.+++.-+ .|+...+--++.+.+.+--.+++-.+.++.-=+++.|+.++-+.| T Consensus 222 vDWWalGVLIYEMlaG~--pPF~~~~~~~iY~KI~~~~v~fP~~fs~~~kdLl~~LL~vD~t~R 283 (355) T KOG0616 222 VDWWALGVLIYEMLAGY--PPFYDDNPIQIYEKILEGKVKFPSYFSSDAKDLLKKLLQVDLTKR 283 (355) T ss_pred HHHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 25888889999997279--987678768999999817766886568789999999876536765 No 369 >cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and Probab=96.75 E-value=0.048 Score=34.99 Aligned_cols=28 Identities=25% Similarity=0.625 Sum_probs=24.8 Q ss_pred CCCCCCEEEEECCCCEEEEECC-HHEECC Q ss_conf 7878622898028953574340-312169 Q gi|254780623|r 286 ADLHPGNLFVDSKGYIVAVDMG-ITGRLS 313 (517) Q Consensus 286 aDPHpGNi~v~~dg~i~~lDfG-~vg~l~ 313 (517) +|=|.||||++++|++.=|||| +.|..+ T Consensus 213 gDRHndNIml~~~GhlfHIDFG~iLG~~~ 241 (361) T cd05174 213 GDRHSDNIMIRESGQLFHIDFGHFLGNFK 241 (361) T ss_pred CCCCCCCEEECCCCCEEEEEHHHHHCCCC T ss_conf 66678845788999889986135535677 No 370 >KOG0694 consensus Probab=96.74 E-value=0.012 Score=39.62 Aligned_cols=250 Identities=12% Similarity=0.113 Sum_probs=142.4 Q ss_pred HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 667788886555502128887236876403104688777-7889998753211468543346917999999988788865 Q gi|254780623|r 126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFR-DIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~-Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) -++-||.|-|..|.++. +++.-||||+.-+.- +.. |..-.+ T Consensus 375 vLGkGsFGkV~lae~k~--~~e~yAIK~LKK~~I--l~~d~Ve~~~---------------------------------- 416 (694) T KOG0694 375 VLGRGSFGKVLLAELKG--TNEYYAIKVLKKGDI--LQRDEVESLM---------------------------------- 416 (694) T ss_pred EECCCCCCEEEEEEECC--CCCEEEEEEEECCCE--ECCCCHHHHH---------------------------------- T ss_conf 86167675589988748--885799998514653--0354188888---------------------------------- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 599998898720244677664300001022178--335300247863242677332002256899999999999897448 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDG 282 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~G 282 (517) .|.+-.+... ..|.+. ..|--+-|+ =--||||+.|--+...-.-......+..+-..=+-+-++=+-++| T Consensus 417 --~EkrI~~la~----~HPFL~--~L~~~fQT~~~l~fvmey~~Ggdm~~~~~~~~F~e~rarfyaAev~l~L~fLH~~~ 488 (694) T KOG0694 417 --CEKRIFELAN----RHPFLV--NLFSCFQTKEHLFFVMEYVAGGDLMHHIHTDVFSEPRARFYAAEVVLGLQFLHENG 488 (694) T ss_pred --HHHHHHHHHC----CCCEEE--ECCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf --9999999851----698473--00200125775899999638881798876472357788899999999998887568 Q ss_pred EECCCCCCCEEEEECCCCEEEEECCHHEECC-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 6617878622898028953574340312169-899999997669997187278999999841266778936899999985 Q gi|254780623|r 283 FFHADLHPGNLFVDSKGYIVAVDMGITGRLS-KRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRAI 361 (517) Q Consensus 283 fFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~-~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i~~~ 361 (517) +.+-|.---||+++++|.+=+.||||+.+.- ...+.. -.=+-.+=++--++.=...+..+|==.|---+.++ T Consensus 489 IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m~~g~~Ts-------TfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeM 561 (694) T KOG0694 489 IIYRDLKLDNLLLDTEGHVKIADFGLCKEGMGQGDRTS-------TFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEM 561 (694) T ss_pred CEEEECCHHHEEECCCCCEEECCCCCCCCCCCCCCCCC-------CCCCCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHH T ss_conf 06641333225776667677501453314578887403-------23488343275665267444300088899999999 Q ss_pred HHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHH Q ss_conf 21001334333113568999997545279712888999999999988499876889888999-9999999 Q gi|254780623|r 362 GEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVARMLNPEFNMWVS-SEPIVEE 430 (517) Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~~~ll~r~l~~lEG~~~~LdP~~d~~~~-~~p~~~~ 430 (517) +- ...|+..-+-.+++..+...--.|+..++.|.+-+++.|++-.-.-|--.++-|.-++ ..||-+. T Consensus 562 L~--Gq~PF~gddEee~FdsI~~d~~~yP~~ls~ea~~il~~ll~k~p~kRLG~~e~d~~~i~~hpFFr~ 629 (694) T KOG0694 562 LV--GESPFPGDDEEEVFDSIVNDEVRYPRFLSKEAIAIMRRLLRKNPEKRLGSGERDAEDIKKHPFFRS 629 (694) T ss_pred HC--CCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHCCCCCCCCCHHHHHCCCCCC T ss_conf 74--899989998899988885077778775548999999998624931014888787023551874113 No 371 >KOG0196 consensus Probab=96.71 E-value=0.00057 Score=49.93 Aligned_cols=179 Identities=16% Similarity=0.187 Sum_probs=119.8 Q ss_pred HHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCC-CCCEEEEEEECCHHHHHHHHHHHHHH Q ss_conf 87488789989999987540478899999986766677888865555021288-87236876403104688777788999 Q gi|254780623|r 92 LQDKMDFFPTNTARLSVASALKAPIEELYCEFDDPIAAASIAQVHPAVVHDIN-GYRKVAVKIIRPGVRKRFFRDIQVMY 170 (517) Q Consensus 92 Lqd~vpp~~~~~v~~~ie~elg~~~~~~F~~fdePlasASiaQVh~A~l~d~~-~g~~VaVKV~rP~i~~~i~~Dl~~l~ 170 (517) ..--+.|+.+|+=.+.+ +||.+.++--+-.+|+-|+++..|.|++++|+-.. .-..||||-.+-|- T Consensus 603 ~k~YiDP~TYEDPnqAv-reFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~Gy------------ 669 (996) T KOG0196 603 TKTYIDPHTYEDPNQAV-REFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGY------------ 669 (996) T ss_pred CEEECCCCCCCCCCHHH-HHHHHHCCHHHEEEEEEEECCCCCCEECCCCCCCCCCCEEEEEEEECCCC------------ T ss_conf 43443876646801899-87664248325688988705655412235315899754037776400576------------ Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCC Q ss_conf 87532114685433469179999999887888655999988987202446776643000010221783353002478632 Q gi|254780623|r 171 LIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKI 250 (517) Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i 250 (517) +-.+..||..||.-|-+|-. -.-|+.--|.- -|.+=+++.||++--++ T Consensus 670 ---------------------------tekqrrdFL~EAsIMGQFdH----PNIIrLEGVVT-ks~PvMIiTEyMENGsL 717 (996) T KOG0196 670 ---------------------------TEKQRRDFLSEASIMGQFDH----PNIIRLEGVVT-KSKPVMIITEYMENGSL 717 (996) T ss_pred ---------------------------CHHHHHHHHHHHHHCCCCCC----CCEEEEEEEEE-CCCEEEEEHHHHHCCCH T ss_conf ---------------------------08777666556554045788----86788987782-48324887666547738 Q ss_pred CHHHHHHHHCCCHHHH--HHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 4267733200225689--9999999999897448661787862289802895357434031216989 Q gi|254780623|r 251 SDTEKLRACGHDLERL--SVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 251 ~d~~~l~~~~~d~~~l--a~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) +..-+.+......-+| +-+++-+-++=+-+.|+.|-|.-+-||+|+.+=.--.=|||+...|.++ T Consensus 718 DsFLR~~DGqftviQLVgMLrGIAsGMkYLsdm~YVHRDLAARNILVNsnLvCKVsDFGLSRvledd 784 (996) T KOG0196 718 DSFLRQNDGQFTVIQLVGMLRGIASGMKYLSDMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDD 784 (996) T ss_pred HHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEECCCEEEEECCCCCEEECCCC T ss_conf 8898645883676027899998887767876437154445566532145137986156640340368 No 372 >KOG0658 consensus Probab=96.65 E-value=0.00011 Score=55.62 Aligned_cols=145 Identities=20% Similarity=0.294 Sum_probs=85.4 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +=+|+||.|-||+|++.. ++++||||=.-|+=+ -=..++.+|+ .+| T Consensus 30 ~liG~GsFg~Vyq~~~~e--~~~~vAIKKv~~d~r-~knrEl~im~-------------------------------~l~ 75 (364) T KOG0658 30 RLIGSGSFGVVYQAKLRE--TEEEVAIKKVLQDKR-YKNRELQIMR-------------------------------KLD 75 (364) T ss_pred EEEEECCCCEEEEEEECC--CCCEEEEEEECCCCC-CCCHHHHHHH-------------------------------HCC T ss_conf 789751463189999847--896578986347878-6758899987-------------------------------568 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH----- Q ss_conf 599998898720244677664300001022178335300247863242677332002256899999999999897----- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL----- 279 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~----- 279 (517) = .|.-++...|..+..- -++| .-|||||++-. +.+. ++.......++...-++.|..|+| T Consensus 76 H----pNIV~L~~~f~~~~~~--d~~~------lnlVleymP~t-L~~~--~r~~~~~~~~mp~~~iKLYt~Qlfrgl~y 140 (364) T KOG0658 76 H----PNIVRLLYFFSSSTES--DEVY------LNLVLEYMPET-LYRV--IRHYTRANQRMPLLEIKLYTYQLFRGLAY 140 (364) T ss_pred C----CCEEEEEEEEEECCCC--CHHH------HHHHHHHCHHH-HHHH--HHHHHHCCCCCCEEEEHHHHHHHHHHHHH T ss_conf 9----6856489899973897--5038------88998754088-9999--99876417777525307899999999888 Q ss_pred --HCCEECCCCCCCEEEEECC-CCEEEEECCHHEECCHHHHH Q ss_conf --4486617878622898028-95357434031216989999 Q gi|254780623|r 280 --RDGFFHADLHPGNLFVDSK-GYIVAVDMGITGRLSKRERR 318 (517) Q Consensus 280 --~~GfFHaDPHpGNi~v~~d-g~i~~lDfG~vg~l~~~~r~ 318 (517) ..|.-|-|--|-|++|+++ |.+=+=|||....|.+.... T Consensus 141 Lh~~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~epn 182 (364) T KOG0658 141 LHSHGICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVKGEPN 182 (364) T ss_pred HHHCCCCCCCCCHHEEEECCCCCEEEECCCCCCEEECCCCCC T ss_conf 875582037787011888178884885267761340369996 No 373 >cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c Probab=96.62 E-value=0.029 Score=36.67 Aligned_cols=29 Identities=24% Similarity=0.546 Sum_probs=25.1 Q ss_pred CCCCCCCEEEEECCCCEEEEECC-HHEECC Q ss_conf 17878622898028953574340-312169 Q gi|254780623|r 285 HADLHPGNLFVDSKGYIVAVDMG-ITGRLS 313 (517) Q Consensus 285 HaDPHpGNi~v~~dg~i~~lDfG-~vg~l~ 313 (517) =+|=|.||||++++|.++=|||| +.|..+ T Consensus 207 IgDRHn~NImi~~~G~l~HIDFG~iLG~~~ 236 (352) T cd00891 207 IGDRHNDNIMLTKTGHLFHIDFGHFLGNFK 236 (352) T ss_pred CCCCCCCCEEECCCCCEEEEECHHHHCCCC T ss_conf 566677755798888599996447656799 No 374 >COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only] Probab=96.59 E-value=0.0016 Score=46.50 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=33.1 Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHH Q ss_conf 486617878622898028953574340312169899999 Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRF 319 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~ 319 (517) -.++|+|-|+||+++.+++.+++|||++++-=+|..=-+ T Consensus 198 ~~lvHGD~~~gNlii~~~~~~gVlDwe~~~lGDP~~Dl~ 236 (321) T COG3173 198 PVLVHGDYRPGNLIIDPGRPTGVLDWELATLGDPLEDLA 236 (321) T ss_pred CEEEECCCCCCCEEEECCCEEEEEECCCCCCCCCHHHHH T ss_conf 656647755687887289725899655666688389988 No 375 >KOG0615 consensus Probab=96.59 E-value=0.0079 Score=41.06 Aligned_cols=143 Identities=16% Similarity=0.245 Sum_probs=84.2 Q ss_pred HHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 76667788886555502128887236876403104688777788999875321146854334691799999998878886 Q gi|254780623|r 124 DDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM 203 (517) Q Consensus 124 dePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El 203 (517) ++-++||--|-|-.|.=+ ++|+.||||+..-.-- ....+ ..-.+. T Consensus 177 ~~~LGsGafg~Vkla~e~--~tgk~vAiKIi~krk~-----------------~~~s~----------------~~~~~~ 221 (475) T KOG0615 177 SKTLGSGAFGLVKLAYEK--KTGKQVAIKIINKRKS-----------------TGCSR----------------AIAKTR 221 (475) T ss_pred EEEECCCCEEEEEEEEEC--CCCCEEEEEEEEHHHC-----------------CCCCC----------------CCCCHH T ss_conf 633268722678887861--5674898544201220-----------------34540----------------125112 Q ss_pred HHHHHHHHHHHHHCCCCCCCC-CCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH---- Q ss_conf 559999889872024467766-430000102217833530024786324267733200225689999999999989---- Q gi|254780623|r 204 DLRLEAAAFSEMAENTVKDQG-FRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT---- 278 (517) Q Consensus 204 D~~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi---- 278 (517) |-.+|+.-++++.. |. |.+-..|.+ .-..-+|||||+|--+-|. +-+.+.-+.. .-+.|++|+ T Consensus 222 ~v~~EieILkkL~H-----P~IV~~~d~f~~-~ds~YmVlE~v~GGeLfd~--vv~nk~l~ed----~~K~~f~Qll~av 289 (475) T KOG0615 222 DVQNEIEILKKLSH-----PNIVRIKDFFEV-PDSSYMVLEYVEGGELFDK--VVANKYLRED----LGKLLFKQLLTAV 289 (475) T ss_pred HHHHHHHHHHHCCC-----CCEEEEEEEEEC-CCCEEEEEEEECCCCHHHH--HHHCCCCCCH----HHHHHHHHHHHHH T ss_conf 05789999984689-----868987421635-7702899998147408999--8743653211----5689999999999 Q ss_pred ---HHCCEECCCCCCCEEEEECC---CCEEEEECCHHEECC Q ss_conf ---74486617878622898028---953574340312169 Q gi|254780623|r 279 ---LRDGFFHADLHPGNLFVDSK---GYIVAVDMGITGRLS 313 (517) Q Consensus 279 ---~~~GfFHaDPHpGNi~v~~d---g~i~~lDfG~vg~l~ 313 (517) -..|..|-|.-|-||++..+ --+=+-|||+..... T Consensus 290 kYLH~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g 330 (475) T KOG0615 290 KYLHSQGIIHRDIKPENILLSNDAEDCLLKITDFGLAKVSG 330 (475) T ss_pred HHHHHCCCCCCCCCCCEEEECCCCCCEEEEEECCCHHHCCC T ss_conf 99987585025677113775157742589850244222015 No 376 >KOG0201 consensus Probab=96.55 E-value=0.002 Score=45.65 Aligned_cols=154 Identities=21% Similarity=0.256 Sum_probs=94.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH Q ss_conf 88999999867666778888655550212888723687640310468877778899987532114685433469179999 Q gi|254780623|r 114 APIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVR 193 (517) Q Consensus 114 ~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~ 193 (517) .+++..|... +-|+-+|.|-||+|.-. .+++.||+||..=.-.+..-. T Consensus 9 ~~~~~~~~~~-~~IgrGsfG~Vyk~~d~--~t~k~vAiKii~Le~~~deIe----------------------------- 56 (467) T KOG0201 9 IDPELLYTKL-ELIGRGSFGEVYKAIDN--KTKKVVAIKIIDLEEAEDEIE----------------------------- 56 (467) T ss_pred CCCCCCCCCC-HHCCCCCCCEEEEEEEC--CCCCEEEEEEECHHHCCHHHH----------------------------- T ss_conf 7831133201-21056660015552304--414257899960322240467----------------------------- Q ss_pred HHHHHHHHHHHHHHHHH--HH-HHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCC-CHHHHHHH Q ss_conf 99988788865599998--89-8720244677664300001022178335300247863242677332002-25689999 Q gi|254780623|r 194 ALEQVTKMEMDLRLEAA--AF-SEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGH-DLERLSVT 269 (517) Q Consensus 194 e~~~~l~~ElD~~~Ea~--n~-~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~-d~~~la~~ 269 (517) .+.+|+-+..+.+ |. +.+...+.+ +.=-++|||+.|-++.+. ++..+. +-..++-. T Consensus 57 ----diqqei~~Ls~~~~~~it~yygsyl~g--------------~~LwiiMey~~gGsv~~l--L~~~~~~~E~~i~~i 116 (467) T KOG0201 57 ----DIQQEISVLSQCDSPNITEYYGSYLKG--------------TKLWIIMEYCGGGSVLDL--LKSGNILDEFEIAVI 116 (467) T ss_pred ----HHHHHHHHHHHCCCCHHHHHHHHEEEC--------------CCHHHHHHHHCCCCHHHH--HCCCCCCCCCEEEEE T ss_conf ----788889999862761077664540326--------------138899997268503322--114887764156542 Q ss_pred H--HHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHH Q ss_conf 9--9999998974486617878622898028953574340312169899999 Q gi|254780623|r 270 L--VQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRF 319 (517) Q Consensus 270 l--~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~ 319 (517) + +.--+.=+...+-.|-|--+-|++++.+|.+.+-|||..+.++...... T Consensus 117 lre~l~~l~ylH~~~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~rr 168 (467) T KOG0201 117 LREVLKGLDYLHSEKKIHRDIKAANILLSESGDVKLADFGVAGQLTNTVKRR 168 (467) T ss_pred HHHHHHHHHHHHHCCEECCCCCCCCEEEECCCCEEEEECCEEEEEECHHHCC T ss_conf 6988877666653250003332355368403757988503366630102124 No 377 >KOG1989 consensus Probab=96.54 E-value=0.015 Score=39.03 Aligned_cols=206 Identities=14% Similarity=0.168 Sum_probs=108.4 Q ss_pred HHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 76667788886555502128887236876403104688777788999875321146854334691799999998878886 Q gi|254780623|r 124 DDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM 203 (517) Q Consensus 124 dePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El 203 (517) ++=||.|-.||||-|.... +|.++|+|-+.-. . +.+|+ .+.+|+ T Consensus 42 ~~vLAEGGFa~VYla~~~~--~~~~~AlKrm~~~-d---e~~L~------------------------------~v~~EI 85 (738) T KOG1989 42 EKVLAEGGFAQVYLAQDVK--GGKKYALKRMYVN-D---EEALN------------------------------AVKREI 85 (738) T ss_pred EEEECCCCCEEEEEEEECC--CCCEEEEEEEECC-C---HHHHH------------------------------HHHHHH T ss_conf 9997147727999988538--8861565431038-7---88999------------------------------999999 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHC-CCHHCCCCEEEEECCCCCCCCHHHH-HHHHCCCHH---HHHHHHHHHHHHHH Q ss_conf 559999889872024467766430000-1022178335300247863242677-332002256---89999999999989 Q gi|254780623|r 204 DLRLEAAAFSEMAENTVKDQGFRVPKI-DWNRTERDVITMEWIDGVKISDTEK-LRACGHDLE---RLSVTLVQSFLLHT 278 (517) Q Consensus 204 D~~~Ea~n~~~~~~~~~~~~~v~vP~v-y~~~st~~VLvmE~i~G~~i~d~~~-l~~~~~d~~---~la~~l~~~~~~qi 278 (517) |+-.-..+.+.+=..+..+..-..=.. .| +-.|-|||+.|-.+-|+-. ....+..-. ++....+++...|= T Consensus 86 ~~MK~L~gh~nIV~yidss~~~~~~~~~~~----EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH 161 (738) T KOG1989 86 DIMKLLSGHKNIVSYIDSSAINRSSNNGVW----EVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMH 161 (738) T ss_pred HHHHHHCCCCCEEEEECCCCCCCCCCCCEE----EEEEEHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 999982489764467315422305788536----8874342437985999999987536773789999999999999986 Q ss_pred H-HCCEECCCCCCCEEEEECCCCEEEEECCHHEECC-----HHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHCCCCCCC Q ss_conf 7-4486617878622898028953574340312169-----8999999976699971872--789999998412667789 Q gi|254780623|r 279 L-RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS-----KRERRFLAEILYGFISRDY--QRVADVHFEAGYVPRHHN 350 (517) Q Consensus 279 ~-~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~-----~~~r~~l~~l~~a~~~~D~--~~~~~~l~~lg~~~~~~d 350 (517) . .--..|=|.---|+++..+|.+.+-|||-+..-. ...+..+-+=+...++-.| ..+++.+-.+++ .+..| T Consensus 162 ~~~pPiIHRDLKiENvLls~~g~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI-~eKsD 240 (738) T KOG1989 162 YLKPPIIHRDLKIENVLLSADGNYKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPI-GEKSD 240 (738) T ss_pred CCCCCCCHHHHHHHHEEECCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCC-CCHHH T ss_conf 37986200000012047768997885756666665678766777889998888627752368688864158877-50567 Q ss_pred HHHHHHHHHHHHHHCCCCCHHH Q ss_conf 3689999998521001334333 Q gi|254780623|r 351 RFSFAQAIRAIGEPIHGQSSDV 372 (517) Q Consensus 351 ~~~~~~~i~~~~~~~~~~~~~~ 372 (517) .=++---+..++ |+..|+++ T Consensus 241 IWALGclLYkLC--y~t~PFe~ 260 (738) T KOG1989 241 IWALGCLLYKLC--YFTTPFEE 260 (738) T ss_pred HHHHHHHHHHHH--HHCCCCCC T ss_conf 899999999998--70787676 No 378 >PRK05231 homoserine kinase; Provisional Probab=96.53 E-value=0.077 Score=33.43 Aligned_cols=73 Identities=14% Similarity=0.070 Sum_probs=44.1 Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-CCCCHHHHHHH Q ss_conf 74486617878622898028953574340312169899999997669997187278999999841266-77893689999 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVP-RHHNRFSFAQA 357 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~-~~~d~~~~~~~ 357 (517) +-.|..|||.+|-|++...+.-.++|||-..+ .+-=...++=++.++|+-. ...|.+.... T Consensus 185 LP~GiIHaDLF~DNvlF~~~~lsGiIDFyfac-----------------~d~~~yDLAI~iN~WC~~~~g~~~~~~~~a- 246 (319) T PRK05231 185 LPRGVIHADLFRDNVLFEGDRLSGFIDFYFAC-----------------NDKLLYDVAITLNDWCFELDGALDVTKARA- 246 (319) T ss_pred CCCCCEECCCCCCCEEEECCCEEEEEEEHHCC-----------------CCHHHHHHHHHHHHHHCCCCCCCCHHHHHH- T ss_conf 88653203224334335089516897502304-----------------616899999999999827889838999999- Q ss_pred HHHHHHHCCC-CCHHH Q ss_conf 9985210013-34333 Q gi|254780623|r 358 IRAIGEPIHG-QSSDV 372 (517) Q Consensus 358 i~~~~~~~~~-~~~~~ 372 (517) +++-|.. +++++ T Consensus 247 ---ll~gY~~~R~L~~ 259 (319) T PRK05231 247 ---LLAAYQSVRPLTA 259 (319) T ss_pred ---HHHHHHHCCCCCH T ss_conf ---9999985489999 No 379 >KOG0984 consensus Probab=96.43 E-value=0.0076 Score=41.20 Aligned_cols=148 Identities=19% Similarity=0.233 Sum_probs=83.5 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) +-++.+--|||-+-++.. +|.-.|||=.+-.+. +...+.++.|+| T Consensus 52 ~elGrGayG~vekmrh~~--sg~imAvKri~~tvn---------------------------------~q~q~r~L~dld 96 (282) T KOG0984 52 EELGRGAYGVVEKMRHIQ--SGTIMAVKRIRATVN---------------------------------SQEQKRLLMDLD 96 (282) T ss_pred HHHCCCCCCHHHHEEECC--CCEEEEEEEEHHHCC---------------------------------HHHHHHHHHHHH T ss_conf 641677433312023235--772899741010068---------------------------------199999987643 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCH-HCCCHHCCCCEEEEECCCCCCCCHH--HHHHHHCCCHHHHHHHHHHHHHHH---- Q ss_conf 599998898720244677664300-0010221783353002478632426--773320022568999999999998---- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVP-KIDWNRTERDVITMEWIDGVKISDT--EKLRACGHDLERLSVTLVQSFLLH---- 277 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP-~vy~~~st~~VLvmE~i~G~~i~d~--~~l~~~~~d~~~la~~l~~~~~~q---- 277 (517) -.+-...+-.. |++= +.| -|.+-.+.||-++- +++.. ..++..+.-++.+.-+++-+..+- T Consensus 97 i~~r~~~CPf~---------V~FyGa~~--regdvwIcME~M~t-Sldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L 164 (282) T KOG0984 97 IIMRTVDCPFT---------VHFYGALF--REGDVWICMELMDT-SLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFL 164 (282) T ss_pred HHCCCCCCCEE---------EEEEHHHH--CCCCEEEEHHHHHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 44067898848---------88531131--35657886878664-59999999986379676677657599999999999 Q ss_pred HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHH Q ss_conf 974486617878622898028953574340312169899999 Q gi|254780623|r 278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRF 319 (517) Q Consensus 278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~ 319 (517) -=.-...|-|-.||||+++.+|++-+-|||+.|.|.+..... T Consensus 165 ~~kL~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~dSiAkt 206 (282) T KOG0984 165 HSKLSVIHRDVKPSNILINYDGQVKICDFGISGYLVDSIAKT 206 (282) T ss_pred HHHHHHHHCCCCCCEEEECCCCCEEECCCCCCEEEHHHHHHH T ss_conf 987656103478550788568968870144442652456777 No 380 >COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair] Probab=96.37 E-value=0.01 Score=40.19 Aligned_cols=139 Identities=19% Similarity=0.254 Sum_probs=80.6 Q ss_pred HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 66778888655550212888723687640310468877778899987532114685433469179999999887888655 Q gi|254780623|r 126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL 205 (517) Q Consensus 126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~ 205 (517) .++.++.++|+.|... ..+++|+..+.....- .....+ T Consensus 7 ~l~~g~~~~v~~~~~~-----~~~~~k~~~~~~~~~~-------------------------------------~~~~~~ 44 (384) T COG0515 7 KLGEGSFGEVYLARDR-----KLVALKVLAKKLESKS-------------------------------------KEVERF 44 (384) T ss_pred EECCCCCEEEEEEEEC-----CCEEEEEECCCCCCCH-------------------------------------HHHHHH T ss_conf 8458865789987544-----5047887331224416-------------------------------------789999 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHH--CCC---HHHHHHHHHHHHHHHH Q ss_conf 99998898720244677664300001022178--3353002478632426773320--022---5689999999999989 Q gi|254780623|r 206 RLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRAC--GHD---LERLSVTLVQSFLLHT 278 (517) Q Consensus 206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~--~~d---~~~la~~l~~~~~~qi 278 (517) .+|+.-...+... + .+.+.+..+.+. ..++|+|+.|..+.+....... ... ...+...+... +..+ T Consensus 45 ~~e~~~~~~~~~~----~--~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~ 117 (384) T COG0515 45 LREIQILASLNHP----P--NIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSA-LEYL 117 (384) T ss_pred HHHHHHHHHHCCC----C--CCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHH-HHHH T ss_conf 9899999970798----8--8742798786288227999732687799997502555556889999999999999-9998 Q ss_pred HHCCEECCCCCCCEEEEECCC-CEEEEECCHHEECC Q ss_conf 744866178786228980289-53574340312169 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKG-YIVAVDMGITGRLS 313 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg-~i~~lDfG~vg~l~ 313 (517) -..|+.|-|.-|.|+++...+ .+.+.|||+...+. T Consensus 118 H~~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~ 153 (384) T COG0515 118 HSKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLP 153 (384) T ss_pred HHCCCCCCCCCHHHEEECCCCCCEEECCCCCHHHCC T ss_conf 857950788988993567788815765754112035 No 381 >KOG0668 consensus Probab=96.30 E-value=0.021 Score=37.84 Aligned_cols=208 Identities=17% Similarity=0.277 Sum_probs=105.6 Q ss_pred HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 66778888655550212888723687640310468877778899987532114685433469179999999887888655 Q gi|254780623|r 126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL 205 (517) Q Consensus 126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~ 205 (517) -++-+--..|..|.--. +.++||||+..|--.+.|.+++.++..+. +......+-+++. T Consensus 45 k~GRGKYSEVFeg~~~~--~neK~ViKiLKPVkkkKIkREikIL~nL~-------gg~NIi~L~DiV~------------ 103 (338) T KOG0668 45 KVGRGKYSEVFEGINIT--NNEKCVIKILKPVKKKKIKREIKILQNLR-------GGPNIIKLLDIVK------------ 103 (338) T ss_pred HHCCCCHHHHHCCCCCC--CCCEEEEEEECHHHHHHHHHHHHHHHHCC-------CCCCEEEHHHHHC------------ T ss_conf 97484077675030347--77627876404577888999999998505-------9987524523420------------ Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH------ Q ss_conf 99998898720244677664300001022178335300247863242677332002256899999999999897------ Q gi|254780623|r 206 RLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL------ 279 (517) Q Consensus 206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~------ 279 (517) +|.-.+|. |+-||++.+-. ..+- ..+..--++.|+.|++ T Consensus 104 ----------------Dp~Sktpa----------LiFE~v~n~Df---k~ly------~tl~d~dIryY~~elLkALdyC 148 (338) T KOG0668 104 ----------------DPESKTPS----------LIFEYVNNTDF---KQLY------PTLTDYDIRYYIYELLKALDYC 148 (338) T ss_pred ----------------CCCCCCCH----------HHHHHHCCCCH---HHHH------HHHCHHHHHHHHHHHHHHHHHH T ss_conf ----------------84336716----------67665245009---9984------4401050999999999998688 Q ss_pred -HCCEECCCCCCCEEEEECC-CCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHH Q ss_conf -4486617878622898028-95357434031216989999999766999718727899999984126677893689999 Q gi|254780623|r 280 -RDGFFHADLHPGNLFVDSK-GYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQA 357 (517) Q Consensus 280 -~~GfFHaDPHpGNi~v~~d-g~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~ 357 (517) --|..|-|-.|-|.||+.. -++-+||||..-.--|. .+-+..-+.+.+. .| T Consensus 149 HS~GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~------------~eYnVRVASRyfK-----GP---------- 201 (338) T KOG0668 149 HSMGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPG------------KEYNVRVASRYFK-----GP---------- 201 (338) T ss_pred HHCCCCCCCCCCCEEEECHHHCEEEEEECCHHHHCCCC------------CEEEEEEEHHHCC-----CC---------- T ss_conf 75170115677420344433440344543348662888------------5010342012247-----83---------- Q ss_pred HHHHHH-HCCCCCHHHCCHHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHHHH------HHHHCCCCC Q ss_conf 998521-001334333113568999997545279----71288899999999998849------987688988 Q gi|254780623|r 358 IRAIGE-PIHGQSSDVISMGKLLTMLFEITELFD----MMTRPELVMLQKTMVVVEGV------ARMLNPEFN 419 (517) Q Consensus 358 i~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~P~~~~ll~r~l~~lEG~------~~~LdP~~d 419 (517) +.+++ +.++-+++=+|+|-++..+. .++-+ -.=+.+++-+.|.+.|-|=. ...|||+|+ T Consensus 202 -ELLVdy~~YDYSLD~WS~GcmlA~mi--FrkepFFhG~dN~DQLVkIakVLGt~el~~Yl~KY~i~Ld~~~~ 271 (338) T KOG0668 202 -ELLVDYQMYDYSLDMWSLGCMLASMI--FRKEPFFHGHDNYDQLVKIAKVLGTDELYAYLNKYQIDLDPQFE 271 (338) T ss_pred -HHEEECHHCCCHHHHHHHHHHHHHHH--HCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHH T ss_conf -41241201121067788889999998--62476547888789999999983859999999987116784566 No 382 >cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole Probab=96.25 E-value=0.064 Score=34.05 Aligned_cols=128 Identities=13% Similarity=0.165 Sum_probs=62.7 Q ss_pred CCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHH Q ss_conf 78786228980289535743403121698999999976699971872789999998-41266778936899999985210 Q gi|254780623|r 286 ADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFE-AGYVPRHHNRFSFAQAIRAIGEP 364 (517) Q Consensus 286 aDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~-lg~~~~~~d~~~~~~~i~~~~~~ 364 (517) +|=|.||||++++|++.=||||-+...+|.---.+ +.-+-.+...+++ || ...+-+.|..-....+.. T Consensus 165 gDRHndNIml~~~GhlfHIDFGfil~~~pg~~~k~--------E~aPFkLt~emv~vmG---G~~~s~~f~~F~~lc~~a 233 (311) T cd05167 165 KDRHNGNIMIDDDGHIIHIDFGFIFEISPGGNLKF--------ESAPFKLTKEMVQIMG---GSMEATPFKWFVELCVRA 233 (311) T ss_pred CCCCCCCEEECCCCCEEEEEHHHHHCCCCCCCCCC--------CCCCEECCHHHHHHHC---CCCCCHHHHHHHHHHHHH T ss_conf 66578844598999799974055405677888886--------8898433799999868---997767899999999999 Q ss_pred CCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 0133433311356899999754527971288899999999998849987688988899999999999986459 Q gi|254780623|r 365 IHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVARMLNPEFNMWVSSEPIVEEWIRDHLG 437 (517) Q Consensus 365 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~~~ll~r~l~~lEG~~~~LdP~~d~~~~~~p~~~~~l~~~~~ 437 (517) |...- .-+..+..+++++...++ | ++. .+ .++-+-.++.++.+= +.+..|..+++.+.++ T Consensus 234 f~~lR----k~~~~ii~L~~lM~~sgi--p-~~~--~~---~i~~l~~rf~l~~sd-~ea~~~~~~lI~~S~~ 293 (311) T cd05167 234 FLAVR----PYMDEIVSLVELMLDSGL--P-CFR--GD---TIKNLRQRFAPEKSE-REAAEFMLSLIAESYE 293 (311) T ss_pred HHHHH----HHHHHHHHHHHHHHCCCC--C-CCC--HH---HHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHH T ss_conf 99999----989999999999826999--8-668--56---899999985899999-9999999999999873 No 383 >KOG0591 consensus Probab=96.23 E-value=0.13 Score=31.66 Aligned_cols=146 Identities=20% Similarity=0.212 Sum_probs=80.8 Q ss_pred HHHHHHHHHHHHHHHHEECCCCCCEEEEE-EECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 76667788886555502128887236876-40310468877778899987532114685433469179999999887888 Q gi|254780623|r 124 DDPIAAASIAQVHPAVVHDINGYRKVAVK-IIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME 202 (517) Q Consensus 124 dePlasASiaQVh~A~l~d~~~g~~VaVK-V~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E 202 (517) .+-|+-+|.|-||++.-.- .|.-||.| ||.-.+...-+.| +..| T Consensus 24 l~~IG~GsFg~vykv~~~~--~g~l~a~K~i~f~~md~k~rq~---------------------------------~v~E 68 (375) T KOG0591 24 LKKIGRGSFGEVYKVQCLL--DGKLVALKKIQFGMMDAKARQD---------------------------------CVKE 68 (375) T ss_pred HHHHCCCCCHHEEEEEECC--CCCHHHHHHCCHHHCCHHHHHH---------------------------------HHHH T ss_conf 9997388620057766506--7640222324420116899999---------------------------------9999 Q ss_pred HHHHHHHH--HHHHHHC-CCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 65599998--8987202-44677664300001022178335300247863242677332002256899999999999897 Q gi|254780623|r 203 MDLRLEAA--AFSEMAE-NTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL 279 (517) Q Consensus 203 lD~~~Ea~--n~~~~~~-~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~ 279 (517) +|...-.+ |.-++.. .|..+..| =-||||+.++--++..-. ......+.+-++.+=-|+.|+. T Consensus 69 i~lLkQL~HpNIVqYy~~~f~~~~ev------------lnivmE~c~~GDLsqmIk--~~K~qkr~ipE~~Vwk~f~QL~ 134 (375) T KOG0591 69 ISLLKQLNHPNIVQYYAHSFIEDNEV------------LNIVMELCDAGDLSQMIK--HFKKQKRLIPEKTVWKYFVQLC 134 (375) T ss_pred HHHHHHCCCCHHHHHHHHHHHCCCHH------------HHHHHHHHCCCCHHHHHH--HHHHCCCCCCHHHHHHHHHHHH T ss_conf 89998638951999977766412223------------678988604667999999--9986065575678999999999 Q ss_pred -----------HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHH Q ss_conf -----------448661787862289802895357434031216989999 Q gi|254780623|r 280 -----------RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERR 318 (517) Q Consensus 280 -----------~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~ 318 (517) ..-+.|-|--|+|||++..|.+-+=|||.-..++..... T Consensus 135 ~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l~s~~tf 184 (375) T KOG0591 135 RALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLGRFLSSKTTF 184 (375) T ss_pred HHHHHHHCCCCCCCEEECCCCCHHEEECCCCCEEECCCHHHHHHCCHHHH T ss_conf 99999841166555234357601068717885664341157673220578 No 384 >KOG0598 consensus Probab=96.21 E-value=0.019 Score=38.19 Aligned_cols=143 Identities=25% Similarity=0.358 Sum_probs=85.6 Q ss_pred HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 99867--6667788886555502128887236876403104688777788999875321146854334691799999998 Q gi|254780623|r 120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ 197 (517) Q Consensus 120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 197 (517) .+.|+ +-|+.||-|+|...+-+| +|+--|.||.+-. +++++ .| .+ T Consensus 24 ~~dF~~lkviGkG~fGkV~~Vrk~d--t~kiYAmKvl~K~----------------~iv~~--------------~e-~~ 70 (357) T KOG0598 24 PDDFEILKVIGKGSFGKVFQVRKKD--TGKIYAMKVLKKK----------------KIVEK--------------KE-VR 70 (357) T ss_pred HHHEEEEEEEECCCCCEEEEEEECC--CCCEEEHHHHHHH----------------HHHHH--------------HH-HH T ss_conf 3461346566216774589999836--5746317555266----------------75201--------------26-88 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC-EEEEECCCCCCCCHHHHHHHHCC---CHH--HHHHHHH Q ss_conf 87888655999988987202446776643000010221783-35300247863242677332002---256--8999999 Q gi|254780623|r 198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD-VITMEWIDGVKISDTEKLRACGH---DLE--RLSVTLV 271 (517) Q Consensus 198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~-VLvmE~i~G~~i~d~~~l~~~~~---d~~--~la~~l~ 271 (517) .+..|. .-++++ + ..+.|+-.|.=-+.++ .||+||+.|--+- -.+...|. ++. -+|+... T Consensus 71 ~~~~Er------~IL~~v-----~-hPFiv~l~ysFQt~~kLylVld~~~GGeLf--~hL~~eg~F~E~~arfYlaEi~l 136 (357) T KOG0598 71 HTKAER------NILSKI-----K-HPFIVKLIYSFQTEEKLYLVLDYLNGGELF--YHLQREGRFSEDRARFYLAEIVL 136 (357) T ss_pred HHHHHH------HHHHHC-----C-CCCEEEEEEECCCCCEEEEEEECCCCCCHH--HHHHHCCCCCHHHHHHHHHHHHH T ss_conf 889999------999716-----7-884741278612587379999546885199--99975277435578999999999 Q ss_pred HHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 9999989744866178786228980289535743403121 Q gi|254780623|r 272 QSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 272 ~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) - +.-+-..|..|-|.-|-||+++.+|.+.+-|||.+.. T Consensus 137 A--L~~LH~~gIiyRDlKPENILLd~~GHi~LtDFgL~k~ 174 (357) T KOG0598 137 A--LGYLHSKGIIYRDLKPENILLDEQGHIKLTDFGLCKE 174 (357) T ss_pred H--HHHHHHCCEEECCCCHHHEEECCCCCEEEECCCCCHH T ss_conf 9--9999867903135888995666888689821665400 No 385 >cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer Probab=96.16 E-value=0.027 Score=36.95 Aligned_cols=178 Identities=16% Similarity=0.136 Sum_probs=75.3 Q ss_pred HHHHHHHHHHHHHEECC----CCCCEEEEEEECCHHHHHHHHH--HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH--- Q ss_conf 67788886555502128----8872368764031046887777--88999875321146854334691799999998--- Q gi|254780623|r 127 IAAASIAQVHPAVVHDI----NGYRKVAVKIIRPGVRKRFFRD--IQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ--- 197 (517) Q Consensus 127 lasASiaQVh~A~l~d~----~~g~~VaVKV~rP~i~~~i~~D--l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~--- 197 (517) +..|=-=++|+.++.+. +..++|+|+|=-++.+..|.++ ..+++.++.. .+.|..-.......++||-. T Consensus 6 l~GGiTN~ly~v~~~~~~~~~~~~~~vlvRIyG~~te~~IdR~~E~~~~~~Ls~~--gigpkl~~~F~nGrieefi~g~~ 83 (302) T cd05156 6 ISGGLTNAVYKVSLPDEDALSDEPRKVLLRVYGQSVELLIDRERELVVFARLSER--NLGPKLYGIFPNGRIEEFIPSRT 83 (302) T ss_pred ECCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCEECHHHHHHHHHHHHHC--CCCCCEEEEECCCEEEEEECCCC T ss_conf 0774146118998378776678888699994889866327769999999999975--99971899928965999878701 Q ss_pred ----HHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCHHCCCHHCCCCEEEEECCCCCCC-CHHHHHHHHCCCHHHHHHH Q ss_conf ----87888655999988987202446---776643000010221783353002478632-4267733200225689999 Q gi|254780623|r 198 ----VTKMEMDLRLEAAAFSEMAENTV---KDQGFRVPKIDWNRTERDVITMEWIDGVKI-SDTEKLRACGHDLERLSVT 269 (517) Q Consensus 198 ----~l~~ElD~~~Ea~n~~~~~~~~~---~~~~v~vP~vy~~~st~~VLvmE~i~G~~i-~d~~~l~~~~~d~~~la~~ 269 (517) .+...--+..=|+.+.++...-- ..+....|.++.-+.. .++..++... .+.............. .. T Consensus 84 L~~~dl~~p~~~~~IA~~l~~lH~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 158 (302) T cd05156 84 LTTEELRDPDISAEIARRMAKLHSIVVPLSPEERDLTPAIWKLLKQ----WLDLAETVIEIVDSDSEKLLEVELSLF-LE 158 (302) T ss_pred CCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH----HHHHHHHHCCCCHHHHHHHHHHHHHHH-HH T ss_conf 8967814968999999999988446677888633344449999999----998601001332046666654578889-99 Q ss_pred HHHHHHHHHH---------HCCEECCCCCCCEEEEEC----CCCEEEEECCHHEE Q ss_conf 9999999897---------448661787862289802----89535743403121 Q gi|254780623|r 270 LVQSFLLHTL---------RDGFFHADLHPGNLFVDS----KGYIVAVDMGITGR 311 (517) Q Consensus 270 l~~~~~~qi~---------~~GfFHaDPHpGNi~v~~----dg~i~~lDfG~vg~ 311 (517) ....+....+ .--|=|-|+.+|||++++ ++++.||||=-.|. T Consensus 159 ~~~~~~~~~~~~~~~~~~~~iVfcHNDLl~gNil~~~~~~~~~~l~~IDfEYag~ 213 (302) T cd05156 159 DEAKYLRFLLESTSEESGSPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYASY 213 (302) T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCCCCCCCEEEEEEECCCC T ss_conf 9999999999750203689768765477755078616767777269998503666 No 386 >KOG0589 consensus Probab=96.10 E-value=0.043 Score=35.39 Aligned_cols=154 Identities=16% Similarity=0.174 Sum_probs=86.3 Q ss_pred CCCCCHHCCCHHCCC-CEEEEECCCCCCCCHHHHHHHHCCC--HHHHHHHHHHHHHH--HHHHCCEECCCCCCCEEEEEC Q ss_conf 664300001022178-3353002478632426773320022--56899999999999--897448661787862289802 Q gi|254780623|r 223 QGFRVPKIDWNRTER-DVITMEWIDGVKISDTEKLRACGHD--LERLSVTLVQSFLL--HTLRDGFFHADLHPGNLFVDS 297 (517) Q Consensus 223 ~~v~vP~vy~~~st~-~VLvmE~i~G~~i~d~~~l~~~~~d--~~~la~~l~~~~~~--qi~~~GfFHaDPHpGNi~v~~ 297 (517) .-|..++.+.+ .+. -.+||+|.+|-.+++.-. +..|.. .+++..-++.+.+. -+-..+.-|=|.-+-|||.++ T Consensus 64 ~iv~y~ds~~~-~~~~l~Ivm~Y~eGg~l~~~i~-~~k~~~f~E~~i~~~~~Q~~~av~ylH~~~iLHRDlK~~Nifltk 141 (426) T KOG0589 64 NIVEYKDSFEE-DGQLLCIVMEYCEGGDLAQLIK-EQKGVLFPEERILKWFVQILLAVNYLHENRVLHRDLKCANIFLTK 141 (426) T ss_pred CEEEECCCHHC-CCCEEEEEEEECCCCCHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC T ss_conf 75642343100-7856898886357988999999-875034619999999999999999987641002200565532044 Q ss_pred CCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHH Q ss_conf 89535743403121698999999976699971872789999998412667789368999999852100133433311356 Q gi|254780623|r 298 KGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRAIGEPIHGQSSDVISMGK 377 (517) Q Consensus 298 dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~ 377 (517) ++.+-+=|||+...+.+..- +...++--.+..+-+.+.++-+ ....|.-.+.--+.++... ...++..++.. T Consensus 142 ~~~VkLgDfGlaK~l~~~~~-----~a~tvvGTp~YmcPEil~d~pY-n~KSDiWsLGC~~yEm~~l--k~aF~a~~m~~ 213 (426) T KOG0589 142 DKKVKLGDFGLAKILNPEDS-----LASTVVGTPYYMCPEILSDIPY-NEKSDIWSLGCCLYEMCTL--KPAFKASNMSE 213 (426) T ss_pred CCCEEECCHHHHHHCCCCHH-----HHHEECCCCCCCCHHHHCCCCC-CCCCCCHHHCCHHHHHHHC--CCCCCCCCHHH T ss_conf 68644233235443077033-----2210137875669788679987-7547402212639998752--66667656688 Q ss_pred HHHHHHHHH Q ss_conf 899999754 Q gi|254780623|r 378 LLTMLFEIT 386 (517) Q Consensus 378 ~~~~l~~~~ 386 (517) +.+.++... T Consensus 214 Li~ki~~~~ 222 (426) T KOG0589 214 LILKINRGL 222 (426) T ss_pred HHHHHHHCC T ss_conf 999985412 No 387 >KOG4645 consensus Probab=96.09 E-value=0.0076 Score=41.21 Aligned_cols=71 Identities=20% Similarity=0.344 Sum_probs=52.7 Q ss_pred EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH-------HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 353002478632426773320022568999999999998-------9744866178786228980289535743403121 Q gi|254780623|r 239 VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH-------TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 239 VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q-------i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) -|-|||++|..++++-.+- ++.. +.+.+.|..| +..+|..|-|+-|-||+.+..|-|-+-|||..-. T Consensus 1310 ~IFMEyC~~GsLa~ll~~g--ri~d----E~vt~vyt~qll~gla~LH~~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~k 1383 (1509) T KOG4645 1310 YIFMEYCEGGSLASLLEHG--RIED----EMVTRVYTKQLLEGLAYLHEHGIVHRDIKPANILLDFNGLIKYGDFGSAVK 1383 (1509) T ss_pred HHHHHHHCCCCHHHHHHHC--CHHH----HHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEECCCCEEEECCCCEEE T ss_conf 9999985367577798753--2036----667789799999899999866722137775560451378477403553157 Q ss_pred CCHH Q ss_conf 6989 Q gi|254780623|r 312 LSKR 315 (517) Q Consensus 312 l~~~ 315 (517) +.+. T Consensus 1384 i~~~ 1387 (1509) T KOG4645 1384 IKNN 1387 (1509) T ss_pred ECCC T ss_conf 2474 No 388 >KOG1006 consensus Probab=96.09 E-value=0.0068 Score=41.59 Aligned_cols=142 Identities=20% Similarity=0.243 Sum_probs=75.7 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) .-++.++.|-||+-+-+. +|+..|||=.|-... +.+. +.++.|+| T Consensus 70 g~iG~G~fG~V~KM~hk~--sg~~mAVKrIr~~n~---~keq------------------------------~rll~e~d 114 (361) T KOG1006 70 GEIGNGAFGTVNKMLHKP--SGKLMAVKRIRSNNI---EKEQ------------------------------KRLLMEHD 114 (361) T ss_pred HHHCCCCCHHHHHHHCCC--CCCEEEEEEEEECCC---HHHH------------------------------HHHHHHHH T ss_conf 875277302446452086--674788777630443---6899------------------------------99999888 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHH----HHHHHCCCHHHH-----HHHHHHH Q ss_conf 5999988987202446776643000010221--7833530024786324267----733200225689-----9999999 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTE----KLRACGHDLERL-----SVTLVQS 273 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~----~l~~~~~d~~~l-----a~~l~~~ 273 (517) -..-+.|... |-+-|-.+- +.-.++||-++ ++++.+- ......+.-+-+ |..=+-- T Consensus 115 ~~mks~~cp~------------IVkfyGa~F~EGdcWiCMELMd-~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~ 181 (361) T KOG1006 115 TVMKSSNCPN------------IVKFYGALFSEGDCWICMELMD-ISLDKLYKRVYSVQKSRIPENILGHITVATVDALD 181 (361) T ss_pred HHHHHCCCCH------------HHHHHHHHHCCCCEEEEHHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHEEEEEHHHHH T ss_conf 8873047957------------9998655514776566588876-24999999999988600858663012245346899 Q ss_pred HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHH Q ss_conf 9998974486617878622898028953574340312169899 Q gi|254780623|r 274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRE 316 (517) Q Consensus 274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~ 316 (517) |++. +....|-|--|.||+++..|.+-+-|||++|.|-... T Consensus 182 yLK~--~lkiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~Si 222 (361) T KOG1006 182 YLKE--ELKIIHRDVKPSNILLDRHGDVKLCDFGICGQLVDSI 222 (361) T ss_pred HHHH--HHHHHHCCCCHHHEEEECCCCEEEECCCCHHHHHHHH T ss_conf 9988--7656504577212677067987651563307677777 No 389 >TIGR02721 ycfN_thiK thiamine kinase; InterPro: IPR014093 Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (ThiK), and additional proteobacterial homologues taken to be orthologs with equivalent function.. Probab=96.06 E-value=0.0046 Score=42.88 Aligned_cols=147 Identities=20% Similarity=0.189 Sum_probs=84.0 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCC----HHHHHHH-------------------- Q ss_conf 6559999889872024467766430000102217833530024786324----2677332-------------------- Q gi|254780623|r 203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKIS----DTEKLRA-------------------- 258 (517) Q Consensus 203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~----d~~~l~~-------------------- 258 (517) .|+.+|-+-+..+... =.-|+|+ +.++.=|+.||++|.-++ |.-.++. T Consensus 37 ~~R~rEy~~L~~l~~~------~laP~~~--~~~~~wllVEWL~G~v~~~dka~~~~l~~~~~~A~~l~~lh~~p~~g~p 108 (262) T TIGR02721 37 VDRQREYAILQALSAV------KLAPKPI--LVNEHWLLVEWLEGEVITKDKAEFVALDLLGELAALLAQLHSQPRFGYP 108 (262) T ss_pred CCHHHHHHHHHHHHHC------CCCCCEE--EECCCCEEEEECCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC T ss_conf 0258899999741305------7888447--7638716886048754135432355620013689999997105788887 Q ss_pred -----------HCCCHHH---HHHHHHHHHHHH----HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHH Q ss_conf -----------0022568---999999999998----9744866178786228980289535743403121698999999 Q gi|254780623|r 259 -----------CGHDLER---LSVTLVQSFLLH----TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFL 320 (517) Q Consensus 259 -----------~~~d~~~---la~~l~~~~~~q----i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l 320 (517) ..+|++. -..++.+-|.++ ++..---|=|-|+|||..+++| +-+|||=-.+-=|+.. .| T Consensus 109 ~~l~~~~~~YW~~~dp~r~tp~~lr~~~~f~~~~~p~~l~laplH~Dvh~~Nlv~~~~G-~kLIDWEYA~dgDial--eL 185 (262) T TIGR02721 109 LSLKARIAQYWLQIDPARRTPEWLRLYKQFRSAPEPAPLKLAPLHMDVHAYNLVVTPQG-LKLIDWEYASDGDIAL--EL 185 (262) T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCEECCCC-CEEEHHHCCCCCCHHH--HH T ss_conf 24488999864650787256999999999964577440443003303464312445887-5353111103467789--99 Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHH Q ss_conf 9766999718727899999984126677-8936899999985 Q gi|254780623|r 321 AEILYGFISRDYQRVADVHFEAGYVPRH-HNRFSFAQAIRAI 361 (517) Q Consensus 321 ~~l~~a~~~~D~~~~~~~l~~lg~~~~~-~d~~~~~~~i~~~ 361 (517) +-++.+= .-|....-+.+..=+..... .|...+.+.|+.- T Consensus 186 a~~~~~n-~~d~~~~~~~~~~Yc~~~~~~~~~~~l~rqv~~W 226 (262) T TIGR02721 186 AAIIRAN-HWDEEQQQDFVQRYCQRRRIYSDISRLKRQVKQW 226 (262) T ss_pred HHHHHHH-CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC T ss_conf 9999971-3781689999999987621542589999998634 No 390 >KOG0670 consensus Probab=96.00 E-value=0.017 Score=38.54 Aligned_cols=94 Identities=19% Similarity=0.367 Sum_probs=63.0 Q ss_pred CCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH-------HCCEECCCCCCCEEEE Q ss_conf 664300001022178335300247863242677332002256899999999999897-------4486617878622898 Q gi|254780623|r 223 QGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL-------RDGFFHADLHPGNLFV 295 (517) Q Consensus 223 ~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~-------~~GfFHaDPHpGNi~v 295 (517) ...++=+.|..+-.++-|+|-|.. .+++=-+.++..|.+- -|--.-+++|.+|+| ..|+.|||--|-||+| T Consensus 492 dk~Hclrl~r~F~hknHLClVFE~-LslNLRevLKKyG~nv-GL~ikaVRsYaqQLflALklLK~c~vlHaDIKPDNiLV 569 (752) T KOG0670 492 DKFHCLRLFRHFKHKNHLCLVFEP-LSLNLREVLKKYGRNV-GLHIKAVRSYAQQLFLALKLLKKCGVLHADIKPDNILV 569 (752) T ss_pred HHHHHHHHHHHHHHCCEEEEEEHH-HHCHHHHHHHHHCCCC-CEEEHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCEEE T ss_conf 006799999776421613897422-1242999999857455-52540799999999999999986493231457663675 Q ss_pred ECCC-CEEEEECCHHEECCHHHHH Q ss_conf 0289-5357434031216989999 Q gi|254780623|r 296 DSKG-YIVAVDMGITGRLSKRERR 318 (517) Q Consensus 296 ~~dg-~i~~lDfG~vg~l~~~~r~ 318 (517) .+.. -|-+-|||..+..+++.-. T Consensus 570 NE~k~iLKLCDfGSA~~~~eneit 593 (752) T KOG0670 570 NESKNILKLCDFGSASFASENEIT 593 (752) T ss_pred CCCCCEEEECCCCCCCCCCCCCCC T ss_conf 167563432367650103445542 No 391 >KOG3653 consensus Probab=95.93 E-value=0.08 Score=33.27 Aligned_cols=144 Identities=19% Similarity=0.235 Sum_probs=92.2 Q ss_pred HHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 67666778888655550212888723687640310468877778899987532114685433469179999999887888 Q gi|254780623|r 123 FDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME 202 (517) Q Consensus 123 fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E 202 (517) +.+=+|++--|-|++|.|+ ++.||||+-.+.-.+.....-+|... |. +.-. T Consensus 214 l~eli~~Grfg~V~KaqL~----~~~VAVKifp~~~kqs~~~Ek~Iy~l---------p~---m~h~------------- 264 (534) T KOG3653 214 LLELIGRGRFGCVWKAQLD----NRLVAVKIFPEQEKQSFQNEKNIYSL---------PG---MKHE------------- 264 (534) T ss_pred HHHHHHCCCCCEEEHHHCC----CCEEEEEECCHHHHHHHHHHHHHHHC---------CC---CCCH------------- T ss_conf 6777625764056430216----85358883688888778758888746---------47---5643------------- Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCH---HHHHHHHHH--HHHHH Q ss_conf 6559999889872024467766430000102217833530024786324267733200225---689999999--99998 Q gi|254780623|r 203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDL---ERLSVTLVQ--SFLLH 277 (517) Q Consensus 203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~---~~la~~l~~--~~~~q 277 (517) |+-+|=-.=+.-+.. -.+-.||+||-+--++.|. |+..-++- .++|+.+.+ +|++. T Consensus 265 --------nIl~Fi~~ekr~t~~---------~~eywLVt~fh~kGsL~dy--L~~ntisw~~~cria~SmarGLa~LHe 325 (534) T KOG3653 265 --------NILQFIGAEKRGTAD---------RMEYWLVTEFHPKGSLCDY--LKANTISWNSLCRIAESMARGLAHLHE 325 (534) T ss_pred --------HHHHHHCHHCCCCCC---------CCCEEEEEEECCCCCHHHH--HHHCCCCHHHHHHHHHHHHHHHHHHCC T ss_conf --------688751232057765---------5521677642547748999--986601499998999999888988600 Q ss_pred HH------HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 97------44866178786228980289535743403121698 Q gi|254780623|r 278 TL------RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 278 i~------~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) =. .-+.-|-|...-|++|..|+.-|+-|||..-++++ T Consensus 326 e~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~~p 368 (534) T KOG3653 326 ELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLALRLEP 368 (534) T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEECCCEEEEECC T ss_conf 3776789898633345553536880577478622540477458 No 392 >KOG0199 consensus Probab=95.92 E-value=0.0085 Score=40.84 Aligned_cols=144 Identities=19% Similarity=0.238 Sum_probs=92.4 Q ss_pred HHHHHHHHHHHHHHHEECCCCCC--EEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872--3687640310468877778899987532114685433469179999999887888 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYR--KVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME 202 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~--~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E 202 (517) |=|+.+|.|-||||.+... +|. .||||..|++....+. T Consensus 116 e~LG~GsFgvV~rg~Wt~p-sgk~V~VAVKclr~d~l~~~m--------------------------------------- 155 (1039) T KOG0199 116 ELLGEGSFGVVKRGTWTQP-SGKHVNVAVKCLRDDSLNAIM--------------------------------------- 155 (1039) T ss_pred HHHCCCCEEEEEECCCCCC-CCCEEEEEEEECCCCCCCHHH--------------------------------------- T ss_conf 8856762146751320279-996776787760478630347--------------------------------------- Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH---- Q ss_conf 6559999889872024467766430000102217833530024786324267733200225689999999999989---- Q gi|254780623|r 203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT---- 278 (517) Q Consensus 203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi---- 278 (517) =||.+||..|.++..- .-|+.=-|. +.-+-.+|||..++-++-|. |.+... ..+--..+.-|..|| T Consensus 156 ddflrEas~M~~L~H~----hliRLyGvV--l~qp~mMV~ELaplGSLldr--Lrka~~--~~llv~~Lcdya~QiA~aM 225 (1039) T KOG0199 156 DDFLREASHMLKLQHP----HLIRLYGVV--LDQPAMMVFELAPLGSLLDR--LRKAKK--AILLVSRLCDYAMQIAKAM 225 (1039) T ss_pred HHHHHHHHHHHHCCCC----CEEEEEEEE--CCCHHHHHHHHCCCCHHHHH--HHHCCC--CCEEHHHHHHHHHHHHHHH T ss_conf 8899999998715672----446786453--06516677643331069999--864356--6410799999999999998 Q ss_pred --H-HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHH Q ss_conf --7-448661787862289802895357434031216989999 Q gi|254780623|r 279 --L-RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERR 318 (517) Q Consensus 279 --~-~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~ 318 (517) + -.+|.|-|.-.-|+++-....+-+-|||.|..|....-. T Consensus 226 ~YLeskrlvHRDLAARNlllasprtVKI~DFGLmRaLg~ned~ 268 (1039) T KOG0199 226 QYLESKRLVHRDLAARNLLLASPRTVKICDFGLMRALGENEDM 268 (1039) T ss_pred HHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCEECCCCCCCC T ss_conf 7886510344445554300036552565033000025777762 No 393 >COG3001 Uncharacterized protein conserved in bacteria [Function unknown] Probab=95.91 E-value=0.04 Score=35.63 Aligned_cols=185 Identities=17% Similarity=0.210 Sum_probs=96.4 Q ss_pred CHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9899999875404788999999867-666778888655550212888723687640310468877778899987532114 Q gi|254780623|r 100 PTNTARLSVASALKAPIEELYCEFD-DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEK 178 (517) Q Consensus 100 ~~~~v~~~ie~elg~~~~~~F~~fd-ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~ 178 (517) .|..|.+.+-+.+|.. ++ -+ +++..+.|-|.++ +.| +..++-||+.+-.-... T Consensus 1 mw~~i~~qlse~lg~~--~i---~er~~v~gG~inea~~--v~d--g~~~~FvK~n~~~~~~~----------------- 54 (286) T COG3001 1 MWQAISQQLSEQLGEG--EI---KEREEVSGGDINEAWR--LRD--GTDPFFVKCNQREQLSM----------------- 54 (286) T ss_pred CHHHHHHHHHHHHCCH--HH---HHCCCCCCCCCCCEEE--EEC--CCCCEEEEECCHHHHHH----------------- T ss_conf 9278999999870814--44---4005568864020357--513--88524787062567878----------------- Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCH---- Q ss_conf 68543346917999999988788865599998898720244677664300001022178--335300247863242---- Q gi|254780623|r 179 LLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISD---- 252 (517) Q Consensus 179 ~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d---- 252 (517) |..||.+++.+++ ...|.||+||-.=|+. ..|||||++--+++. T Consensus 55 --------------------------f~AEa~gL~~la~----s~ti~VP~vi~~G~~~~~sylVle~L~~~~~d~~s~~ 104 (286) T COG3001 55 --------------------------FTAEADGLELLAR----SNTITVPKVIAVGASRDHSYLVLEYLPTGPLDAHSAF 104 (286) T ss_pred --------------------------HHHHHHHHHHHHH----CCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCHHHH T ss_conf --------------------------9998877999987----1873466158844778706899862367999823689 Q ss_pred -----HHHHHH----------------------------------------------HCCCHHHHHHHHHHHHHHHHHH- Q ss_conf -----677332----------------------------------------------0022568999999999998974- Q gi|254780623|r 253 -----TEKLRA----------------------------------------------CGHDLERLSVTLVQSFLLHTLR- 280 (517) Q Consensus 253 -----~~~l~~----------------------------------------------~~~d~~~la~~l~~~~~~qi~~- 280 (517) ++.++. .|.+...+ +.+++. ..+.+. T Consensus 105 ~~GqqLA~LH~~~~~~~fG~d~dn~iG~t~QpN~W~~~Wa~FfaeqRig~qlqlar~rg~~f~di-d~~~~~-i~elL~~ 182 (286) T COG3001 105 ILGQQLARLHQWGGQAQFGLDFDNYIGTTPQPNTWQRRWATFFAEQRIGWQLQLARERGLTFGDI-DAIVEK-IQELLAD 182 (286) T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCH-HHHHHH-HHHHHHC T ss_conf 99999999986137656676566645787889877234999989865249999999808985679-999999-9998722 Q ss_pred ----CCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC Q ss_conf ----48661787862289802895357434031216989999999766999718727899999984126677 Q gi|254780623|r 281 ----DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRH 348 (517) Q Consensus 281 ----~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~ 348 (517) --..|+|.-+||.+..+|| .+++|=.+-. =+++.--++.++|-++ ....-+......-.+.+ T Consensus 183 hqpqPsLlHGDLW~gN~a~~~~G-Pv~fDPA~y~-GDrE~Dlam~elFggf----p~efy~gY~sv~PL~~G 248 (286) T COG3001 183 HQPQPSLLHGDLWSGNCAFGKDG-PVIFDPACYW-GDRECDLAMLELFGGF----PPEFYDGYQSVSPLPAG 248 (286) T ss_pred CCCCCCEEECCCCCCCCCCCCCC-CEEECCCCCC-CCCCCCEEHHHHHCCC----CHHHHHHHHCCCCCCCC T ss_conf 79995301145222432235789-7354650126-8843131067551677----69999766406889876 No 394 >KOG0194 consensus Probab=95.90 E-value=0.021 Score=37.85 Aligned_cols=208 Identities=15% Similarity=0.087 Sum_probs=112.5 Q ss_pred HHHHHHHHHHHHHHHEECCCCC--CEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 6667788886555502128887--23687640310468877778899987532114685433469179999999887888 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGY--RKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME 202 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g--~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E 202 (517) +=++++--|-|++|+|+..++. ..||||..+- +....-.+- T Consensus 163 kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~-------------------------------------~~~~~~~~~ 205 (474) T KOG0194 163 KKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKG-------------------------------------SSELTKEQI 205 (474) T ss_pred CEEECCCCCEEEEEEEEECCCCEEEEEEEEEECC-------------------------------------CCCCCHHHH T ss_conf 1061232567998899965775000068876224-------------------------------------340149999 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHC--CCHHHHHH--HHHHHHHHHH Q ss_conf 6559999889872024467766430000102217833530024786324267733200--22568999--9999999989 Q gi|254780623|r 203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACG--HDLERLSV--TLVQSFLLHT 278 (517) Q Consensus 203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~--~d~~~la~--~l~~~~~~qi 278 (517) .+|-+||+-|..+..- .|.-=--+--...+-.||||++.|-++.+. |...+ +...+... ..+-.-+.-+ T Consensus 206 ~e~m~EArvMr~l~H~-----NVVr~yGVa~~~~Pl~ivmEl~~gGsL~~~--L~k~~~~v~~~ek~~~~~~AA~Gl~YL 278 (474) T KOG0194 206 KEFMKEARVMRQLNHP-----NVVRFYGVAVLEEPLMLVMELCNGGSLDDY--LKKNKKSLPTLEKLRFCYDAARGLEYL 278 (474) T ss_pred HHHHHHHHHHHHCCCC-----CEEEEEEEECCCCCCEEEEEECCCCCHHHH--HHHCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 9999999999857998-----789998787178762787873379818999--975777788999999999998679999 Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH Q ss_conf 74486617878622898028953574340312169899999997669997187278999999841266778936899999 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAI 358 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i 358 (517) -..+..|=|.-.=|.++..++-+=+=|||+.-.-+ .....+ +...=-.+.++=..+.-+..+..+|.-.|---+ T Consensus 279 h~k~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~---~~~~~~---~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~ 352 (474) T KOG0194 279 HSKNCIHRDIAARNCLYSKKGVVKISDFGLSRAGS---QYVMKK---FLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLL 352 (474) T ss_pred HHCCCCCHHHHHHHHEECCCCEEEECCCCCCCCCC---CEECCC---CCCCCCCEECCHHHHCCCCCCCCCCHHHEEEEE T ss_conf 87798536576787052279857867665665774---013034---213576132482243047646565243201036 Q ss_pred HHHHHHCCCCCHHHCCHHHHHHHHH Q ss_conf 9852100133433311356899999 Q gi|254780623|r 359 RAIGEPIHGQSSDVISMGKLLTMLF 383 (517) Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~l~ 383 (517) -++++.-.. |....+..++...+. T Consensus 353 ~Eif~~g~~-Py~g~~~~~v~~kI~ 376 (474) T KOG0194 353 WEIFENGAE-PYPGMKNYEVKAKIV 376 (474) T ss_pred EEEECCCCC-CCCCCCHHHHHHHHH T ss_conf 776226888-988878999999998 No 395 >cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. Probab=95.79 E-value=0.097 Score=32.65 Aligned_cols=128 Identities=14% Similarity=0.095 Sum_probs=66.5 Q ss_pred CCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHCCCCCCCHHHHHHHHHHHHH Q ss_conf 178786228980289535743403121698999999976699971872789999998-4126677893689999998521 Q gi|254780623|r 285 HADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFE-AGYVPRHHNRFSFAQAIRAIGE 363 (517) Q Consensus 285 HaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~-lg~~~~~~d~~~~~~~i~~~~~ 363 (517) =+|=|.||||++++|+++=||||-+...+|.-- ..+ +.-+-.+...+++ ||- .+-+.|..-...++. T Consensus 143 igDRHn~NILl~~~Ghl~HIDFGfilg~~Pg~~---~~~-----E~aPFKLT~emv~vmGG----~~s~~f~~F~~lc~~ 210 (289) T cd00893 143 IKDRHNGNILLDSDGHIIHIDFGFILDSSPGNN---LGF-----EPAAFKFTKEMVDFMGG----KKSDDFKKFRYLCLR 210 (289) T ss_pred CCCCCCCCEEECCCCEEEEEEEHHHHCCCCCCC---CCC-----CCCCEECCHHHHHHHCC----CCCHHHHHHHHHHHH T ss_conf 576578855787888199986023306687889---887-----88980057999998579----885779999999999 Q ss_pred HCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 00133433311356899999754527971288899999999998849987688988899999999999986459 Q gi|254780623|r 364 PIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVARMLNPEFNMWVSSEPIVEEWIRDHLG 437 (517) Q Consensus 364 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~~~ll~r~l~~lEG~~~~LdP~~d~~~~~~p~~~~~l~~~~~ 437 (517) .|...- .-+..+..+++++...++ | +|- + ..++.+-.++.++.+ -+.+..|..+++.+.++ T Consensus 211 af~~lR----k~~~~ii~L~~lM~~s~l--p-~~~---~--~~i~~l~~rf~l~~s-d~~a~~~~~~lI~~S~~ 271 (289) T cd00893 211 GFIAVR----KHMDLVISLVYLLIFSGL--P-CFR---G--STIKKLKERLCLNMS-EKEAINTVMKKIDSSYN 271 (289) T ss_pred HHHHHH----HHHHHHHHHHHHHCCCCC--C-CCC---H--HHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHH T ss_conf 999999----989999999999807999--8-668---6--799999997199999-99999999999999985 No 396 >KOG2686 consensus Probab=95.69 E-value=0.051 Score=34.79 Aligned_cols=204 Identities=19% Similarity=0.247 Sum_probs=109.1 Q ss_pred CHHHHHHHHHHHCCCCHHHHHHHHH--H--HHHHHHHHHHHHHHEECC-----CCCCEEEEEEECCHHH-HHHHHHHHHH Q ss_conf 9899999875404788999999867--6--667788886555502128-----8872368764031046-8877778899 Q gi|254780623|r 100 PTNTARLSVASALKAPIEELYCEFD--D--PIAAASIAQVHPAVVHDI-----NGYRKVAVKIIRPGVR-KRFFRDIQVM 169 (517) Q Consensus 100 ~~~~v~~~ie~elg~~~~~~F~~fd--e--PlasASiaQVh~A~l~d~-----~~g~~VaVKV~rP~i~-~~i~~Dl~~l 169 (517) ....+.....+.+|..|.++-.... + |-+.+.+ ...+++... ...++|.+.|-++++. .....++.++ T Consensus 19 ~~~~~~~~~~~~l~~~w~~v~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~k~LlRiyg~~~~~~~~~~Esv~f 96 (366) T KOG2686 19 ILPRAKELCAQYLGGAWRDVINEEQRLEVIPGGGSNL--LFVVTSSASTTPIKDEPRKVLLRIYGQGVDFSQRETESVMF 96 (366) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCE--EEEEECCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH T ss_conf 1188999999873667765234353255335777654--79994576667865665206888725873377765478999 Q ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCH-HCCCCEEEEECCCCC Q ss_conf 9875321146854334691799999998878886559999889872024467766430000102-217833530024786 Q gi|254780623|r 170 YLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWN-RTERDVITMEWIDGV 248 (517) Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~-~st~~VLvmE~i~G~ 248 (517) ..++.. .+.|.+-..-..+=++||-.+-.--++=.++..+..+.+..++....+.+|-.-.. .+=++. -.|..|. T Consensus 97 a~lSer--~lGPkL~G~F~~GR~EefipSRtL~~~~i~~p~~S~~Ia~~~~~~H~~~~p~~ke~~~~~~~~--~~wl~~~ 172 (366) T KOG2686 97 AILSER--GLGPKLYGFFSGGRFEEFIPSRTLTLADIRDPEISKRIAAKLAEYHGIEVPGPKEPRSLWERY--KKWLKGA 172 (366) T ss_pred HHHHHC--CCCCCEEEECCCCCHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH--HHHHHHH T ss_conf 997532--778600200278607661355334167542524789999999871677688885479999999--9998655 Q ss_pred C-CCHHHHHHHHCCC---HHHHHH--HHHHHHHHHHHH--CCEECCCCCCCEEEEE-CCCCEEEEECCHHE Q ss_conf 3-2426773320022---568999--999999998974--4866178786228980-28953574340312 Q gi|254780623|r 249 K-ISDTEKLRACGHD---LERLSV--TLVQSFLLHTLR--DGFFHADLHPGNLFVD-SKGYIVAVDMGITG 310 (517) Q Consensus 249 ~-i~d~~~l~~~~~d---~~~la~--~l~~~~~~qi~~--~GfFHaDPHpGNi~v~-~dg~i~~lDfG~vg 310 (517) . +.........+.+ ...+.. ...+.+. +.+. -+|=|-|.-.|||+.. +.+.+++|||--.+ T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~-e~~~~~vvFcHNDlq~gNiL~~~~t~~Lv~IDfEYas 242 (366) T KOG2686 173 KKIKPTEVSYSCGPDKLEIEDLLLELSLFRKWS-ELTKSPVVFCHNDLQYGNILLLNSTKELVLIDFEYAS 242 (366) T ss_pred HHCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHH-HCCCCCEEEECCCCCCCCEEEECCCCCEEEEEECCCC T ss_conf 404787552001542346988999999999998-5478875655365654532132377853688642466 No 397 >KOG1151 consensus Probab=95.63 E-value=0.039 Score=35.74 Aligned_cols=88 Identities=19% Similarity=0.280 Sum_probs=52.0 Q ss_pred CCCCCCHHCCCHHCCC---CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH---------HCCEECCCCC Q ss_conf 7664300001022178---335300247863242677332002256899999999999897---------4486617878 Q gi|254780623|r 222 DQGFRVPKIDWNRTER---DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL---------RDGFFHADLH 289 (517) Q Consensus 222 ~~~v~vP~vy~~~st~---~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~---------~~GfFHaDPH 289 (517) -+.-+|-+.|+-+|-. -+-|.||++|--++=. ++.. +.+.++-+++..-||. .--..|-|.. T Consensus 524 LDHpRIVKlYDyfslDtdsFCTVLEYceGNDLDFY--LKQh----klmSEKEARSIiMQiVnAL~YLNEikpPIIHYDLK 597 (775) T KOG1151 524 LDHPRIVKLYDYFSLDTDSFCTVLEYCEGNDLDFY--LKQH----KLMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLK 597 (775) T ss_pred CCCCEEEEEEEEEEECCCCCEEEEEECCCCCHHHH--HHHH----HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC T ss_conf 47531024010245226653343453478850478--7751----10007888999999999999871368970452167 Q ss_pred CCEEEEEC---CCCEEEEECCHHEECCHH Q ss_conf 62289802---895357434031216989 Q gi|254780623|r 290 PGNLFVDS---KGYIVAVDMGITGRLSKR 315 (517) Q Consensus 290 pGNi~v~~---dg~i~~lDfG~vg~l~~~ 315 (517) ||||++-. .|.|-+-|||+...++.+ T Consensus 598 PgNILLv~GtacGeIKITDFGLSKIMddd 626 (775) T KOG1151 598 PGNILLVNGTACGEIKITDFGLSKIMDDD 626 (775) T ss_pred CCCEEEECCCCCCEEEEECCCHHHHCCCC T ss_conf 76279853763341676304224421577 No 398 >cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and Probab=95.63 E-value=0.17 Score=30.81 Aligned_cols=24 Identities=25% Similarity=0.560 Sum_probs=22.9 Q ss_pred CCCCCCEEEEECCCCEEEEECCHH Q ss_conf 787862289802895357434031 Q gi|254780623|r 286 ADLHPGNLFVDSKGYIVAVDMGIT 309 (517) Q Consensus 286 aDPHpGNi~v~~dg~i~~lDfG~v 309 (517) +|=|.||||++++|++.=||||-+ T Consensus 217 gDRHndNIml~~~GhlfHIDFG~i 240 (365) T cd00894 217 GDRHNDNIMITETGNLFHIDFGHI 240 (365) T ss_pred CCCCCCCEEECCCCCEEEEEHHHH T ss_conf 555677535889887899841774 No 399 >cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d Probab=95.53 E-value=0.034 Score=36.15 Aligned_cols=84 Identities=18% Similarity=0.194 Sum_probs=44.7 Q ss_pred CCCCHHCCCHHCCCCEEEEECCCCCC-CCHHH--HHHHHCCCHHH---HHHHHHHHHHH-HHHHCCEECCCCCCCEEEEE Q ss_conf 64300001022178335300247863-24267--73320022568---99999999999-89744866178786228980 Q gi|254780623|r 224 GFRVPKIDWNRTERDVITMEWIDGVK-ISDTE--KLRACGHDLER---LSVTLVQSFLL-HTLRDGFFHADLHPGNLFVD 296 (517) Q Consensus 224 ~v~vP~vy~~~st~~VLvmE~i~G~~-i~d~~--~l~~~~~d~~~---la~~l~~~~~~-qi~~~GfFHaDPHpGNi~v~ 296 (517) .+..|+|.+ .++++=..||+++.. +.++- .+...-.+... .-++...++.- .+..+=+-=+|=||+||+++ T Consensus 69 ~~~~Y~Vip--ls~~~GlIe~V~~~~tl~~il~~~~~~~~~~~~~~~~~r~~F~~S~A~~sv~~yilglgDRH~~NIl~~ 146 (222) T cd05164 69 TIRTYAVIP--LNSRSGLIEWVEGTTTLKPVLKKWFWLQFPDPEQWFAARKNYTRSTAVMSIVGYILGLGDRHLDNILID 146 (222) T ss_pred EEECCEEEE--CCCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE T ss_conf 336351876--479841699918961267999999999792989999999999999999999999712588886657776 Q ss_pred C-CCCEEEEECCHH Q ss_conf 2-895357434031 Q gi|254780623|r 297 S-KGYIVAVDMGIT 309 (517) Q Consensus 297 ~-dg~i~~lDfG~v 309 (517) . +|+++-+|||.+ T Consensus 147 ~~tG~v~HIDFg~~ 160 (222) T cd05164 147 RETGEVVHIDFGCI 160 (222) T ss_pred CCCCCEEEEEHHHH T ss_conf 48774899841876 No 400 >KOG0906 consensus Probab=95.44 E-value=0.26 Score=29.34 Aligned_cols=167 Identities=16% Similarity=0.173 Sum_probs=80.3 Q ss_pred EEECCCCCCCCHHHHH--------HHHCCCH---HHHHHHHHHHHHHHHHHCCEE-----CCCCCCCEEEEECCCCEEEE Q ss_conf 3002478632426773--------3200225---689999999999989744866-----17878622898028953574 Q gi|254780623|r 241 TMEWIDGVKISDTEKL--------RACGHDL---ERLSVTLVQSFLLHTLRDGFF-----HADLHPGNLFVDSKGYIVAV 304 (517) Q Consensus 241 vmE~i~G~~i~d~~~l--------~~~~~d~---~~la~~l~~~~~~qi~~~GfF-----HaDPHpGNi~v~~dg~i~~l 304 (517) .+|+|+|.+++.+-.- ++..-+. .-+.-...+.|.+..-.+-+. -||-|++|+++++||++--+ T Consensus 638 ~vefI~s~~la~Ils~~~~I~~ylke~~p~e~ap~gi~~~v~dnfVkScaGYsVitYILGvGDRhldNLllT~dGk~FHi 717 (843) T KOG0906 638 FVEFIPSKPLARILSEYHSILMYLKEDRPDENAPFGISPEVMDNFVKSCAGYSVITYILGVGDRHLDNLLLTKDGKLFHI 717 (843) T ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEECCCCCEEEE T ss_conf 18962697489999876689999986289767877777669989998612603235652046777675687358837987 Q ss_pred ECCHH-EEC----CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHH Q ss_conf 34031-216----9899999997669997187278999999841266778936899999985210013343331135689 Q gi|254780623|r 305 DMGIT-GRL----SKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRAIGEPIHGQSSDVISMGKLL 379 (517) Q Consensus 305 DfG~v-g~l----~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 379 (517) |||-+ |+= +|.++-. ..++ ..||-. +....++|..-....+...+ .-+.++ T Consensus 718 DFgyIlGRDPKP~pp~MkL~-------------kemv---e~mgg~-es~~Yq~F~s~c~~Af~~LR-------RssnlI 773 (843) T KOG0906 718 DFGYILGRDPKPFPPPMKLA-------------KEMV---EGMGGA-ESKQYQEFRSYCYEAFLILR-------RSSNLI 773 (843) T ss_pred EEEEECCCCCCCCCCCCCCC-------------HHHH---HHHCCC-CHHHHHHHHHHHHHHHHHHH-------HHCCHH T ss_conf 52223167999999843258-------------9999---985463-45889999999999999999-------852489 Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH Q ss_conf 999975452797128889999999999884998768898889999999999998645968899999999999999 Q gi|254780623|r 380 TMLFEITELFDMMTRPELVMLQKTMVVVEGVARMLNPEFNMWVSSEPIVEEWIRDHLGAKSCVVDFQDGIKTAFR 454 (517) Q Consensus 380 ~~l~~~~~~~~~~~P~~~~ll~r~l~~lEG~~~~LdP~~d~~~~~~p~~~~~l~~~~~p~~~~~~~~~~~~~~~~ 454 (517) ..++.++...++ | + -+.|| +.+-+.+++.++-.++.+.....+.+.+.+.-. T Consensus 774 lnLf~LM~~~~I--P-D---------------ia~dp-----~k~I~kvqeRfrLdmSde~A~~~fq~lI~~SV~ 825 (843) T KOG0906 774 LNLFSLMADANI--P-D---------------IAFDP-----NKAILKVQERFRLDMSDEAATKHFQKLINESVN 825 (843) T ss_pred HHHHHHHHCCCC--C-C---------------EEECC-----CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH T ss_conf 999999822899--8-6---------------31170-----221699999870364678899999999998888 No 401 >KOG1165 consensus Probab=95.39 E-value=0.04 Score=35.60 Aligned_cols=100 Identities=12% Similarity=0.249 Sum_probs=63.1 Q ss_pred HHCCCCCCCCCCCHHCCCHHCCC----CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHH--HHHHHHHHCCEECCCC Q ss_conf 20244677664300001022178----33530024786324267733200225689999999--9999897448661787 Q gi|254780623|r 215 MAENTVKDQGFRVPKIDWNRTER----DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQ--SFLLHTLRDGFFHADL 288 (517) Q Consensus 215 ~~~~~~~~~~v~vP~vy~~~st~----~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~--~~~~qi~~~GfFHaDP 288 (517) +.+.+.+. .-||.|| |-++ ++||||-+ |-++.|+-.+-......+.++-.-.. .-++-+-...+.--|- T Consensus 76 ~YKlL~g~--~GIP~vY--YFGqeG~~NiLVidLL-GPSLEDLFD~CgR~FSvKTV~miA~Qmi~rie~vH~k~LIYRDI 150 (449) T KOG1165 76 TYKLLGGT--EGIPQVY--YFGQEGKYNILVIDLL-GPSLEDLFDLCGRRFSVKTVAMIAKQMITRIEYVHEKDLIYRDI 150 (449) T ss_pred HHHHHCCC--CCCCCEE--EECCCCCHHHHHHHHH-CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCC T ss_conf 99997289--9998146--5446641110224441-86789999985675407869999999999999887414154136 Q ss_pred CCCEEEEECCC-----CEEEEECCHHEE-CCHHHHHH Q ss_conf 86228980289-----535743403121-69899999 Q gi|254780623|r 289 HPGNLFVDSKG-----YIVAVDMGITGR-LSKRERRF 319 (517) Q Consensus 289 HpGNi~v~~dg-----~i~~lDfG~vg~-l~~~~r~~ 319 (517) -|-|++|...| .|-++||||+.. .||.++.. T Consensus 151 KPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~TkqH 187 (449) T KOG1165 151 KPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKTKQH 187 (449) T ss_pred CCCCEEECCCCCCCCCEEEEEECCCHHHHCCCCCCCC T ss_conf 7554565688998876689984432433048644566 No 402 >cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII Probab=95.26 E-value=0.29 Score=28.91 Aligned_cols=30 Identities=33% Similarity=0.562 Sum_probs=24.9 Q ss_pred CCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 178786228980289535743403121698 Q gi|254780623|r 285 HADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 285 HaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) =+|=|.||||++++|++.=||||-+=-.+| T Consensus 145 IgDRHn~NImi~~~Ghl~HIDFGfiLg~~p 174 (293) T cd05168 145 IKDRHNGNILIDNDGHIIHIDFGFMLSNSP 174 (293) T ss_pred CCCCCCCCEEECCCCCEEEEEHHHHHCCCC T ss_conf 566578864788988899874245534588 No 403 >KOG0983 consensus Probab=95.17 E-value=0.042 Score=35.49 Aligned_cols=144 Identities=22% Similarity=0.324 Sum_probs=80.9 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHH----HHHHHHHHHHHHHHH--HHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 6667788886555502128887236876403104----688777788999875--3211468543346917999999988 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGV----RKRFFRDIQVMYLIA--RIQEKLLPSMRRLCFSAVVRALEQV 198 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i----~~~i~~Dl~~l~~~~--~~~~~~~~~~~~~~~~~~~~e~~~~ 198 (517) .-++++|-|||-+++.+- +|.-.|||-.|-.= -++|-.|++++-.-- .++-+.++.. ..|..- . T Consensus 98 ~dlGsGtcG~V~k~~~rs--~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyF-i~n~dV-------~ 167 (391) T KOG0983 98 GDLGSGTCGQVWKMRFRS--TGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYF-ITNTDV-------F 167 (391) T ss_pred HHHCCCCCCCEEEEEECC--CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEE-EECCHH-------H T ss_conf 750688755457888704--664899985215687788878987656776506997231134578-627609-------9 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH Q ss_conf 78886559999889872024467766430000102217833530024786324267733200225689999999999989 Q gi|254780623|r 199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT 278 (517) Q Consensus 199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi 278 (517) +-.|+ =+..++++-+..+.. || |+|-|. + .++..-+-.|++ T Consensus 168 IcMel----Ms~C~ekLlkrik~p----iP--------------E~ilGk-~--------------tva~v~AL~YLK-- 208 (391) T KOG0983 168 ICMEL----MSTCAEKLLKRIKGP----IP--------------ERILGK-M--------------TVAIVKALYYLK-- 208 (391) T ss_pred HHHHH----HHHHHHHHHHHHCCC----CH--------------HHHHHH-H--------------HHHHHHHHHHHH-- T ss_conf 99999----999999999985188----62--------------776514-3--------------899999999987-- Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHH Q ss_conf 744866178786228980289535743403121698999 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRER 317 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r 317 (517) =.+|+.|-|-.|.||+++..|.|-+-|||+.|+|-+... T Consensus 209 eKH~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSkA 247 (391) T KOG0983 209 EKHGVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSKA 247 (391) T ss_pred HHCCEEECCCCCCCEEECCCCCEEEECCCCCCEEECCCC T ss_conf 742515435672316773679877610444414421200 No 404 >COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism] Probab=95.03 E-value=0.019 Score=38.15 Aligned_cols=34 Identities=32% Similarity=0.472 Sum_probs=27.9 Q ss_pred CEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 8661787862289802895357434031216989 Q gi|254780623|r 282 GFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 282 GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) =+-|+|.||||++.+++|++.+|||=-.|-=|+. T Consensus 154 v~cH~Dl~~~N~l~t~~~~l~LIDWEyAg~~D~~ 187 (269) T COG0510 154 VPCHNDLNPGNLLLTDKGGLFLIDWEYAGLNDPA 187 (269) T ss_pred EEECCCCCCCCEEECCCCCEEEEECCCCCCCCHH T ss_conf 4445789845057858996899961457776589 No 405 >COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion] Probab=94.99 E-value=0.35 Score=28.36 Aligned_cols=155 Identities=16% Similarity=0.169 Sum_probs=77.6 Q ss_pred HHHHHHHHHHHHHHHC---CCC-------CCCCCCCHHCCCHHCCCCEEEEECCCC-CCCCHHH--HHHHHCCC------ Q ss_conf 8655999988987202---446-------776643000010221783353002478-6324267--73320022------ Q gi|254780623|r 202 EMDLRLEAAAFSEMAE---NTV-------KDQGFRVPKIDWNRTERDVITMEWIDG-VKISDTE--KLRACGHD------ 262 (517) Q Consensus 202 ElD~~~Ea~n~~~~~~---~~~-------~~~~v~vP~vy~~~st~~VLvmE~i~G-~~i~d~~--~l~~~~~d------ 262 (517) --|.++|+..++-++- .++ -+-+++.++|++ .+++.=++||++. .++..+- ..+..+++ T Consensus 1804 ~dDlRQD~~~~Ql~~l~n~iL~~~~~~~~R~l~i~~Y~Vip--ls~~~GiIe~vpn~~tl~sI~~~~~~~~~i~~~~~~~ 1881 (2105) T COG5032 1804 GDDLRQDELALQLIRLMNKILKKDKETRRRDLWIRPYKVIP--LSPGSGIIEWVPNSDTLHSILREYHKRKNISIDQEKK 1881 (2105) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCEEEEEEEE--CCCCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHH T ss_conf 75132889999999999999985735421674224212786--2798665998469621999999985512888566766 Q ss_pred ------------HHH----------------------------HH-HHHHHHHHHH-HHHCCEECCCCCCCEEEEEC-CC Q ss_conf ------------568----------------------------99-9999999998-97448661787862289802-89 Q gi|254780623|r 263 ------------LER----------------------------LS-VTLVQSFLLH-TLRDGFFHADLHPGNLFVDS-KG 299 (517) Q Consensus 263 ------------~~~----------------------------la-~~l~~~~~~q-i~~~GfFHaDPHpGNi~v~~-dg 299 (517) +.+ .+ .+.++++..+ +..+..==+|=|||||++++ +| T Consensus 1882 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~f~~~~~w~~aR~Ny~~SlA~ySvigYiLglgDRH~~NIliD~~sG 1961 (2105) T COG5032 1882 LAARLDNLKLLLKDEFFTKATLKSPPVLYDWFSESFPNPEDWLTARTNFARSLAVYSVIGYILGLGDRHPGNILIDRSSG 1961 (2105) T ss_pred HHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCC T ss_conf 54667763334035676565237981577777771688457999999899999999999997048886777077886879 Q ss_pred CEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHH Q ss_conf 5357434031216989999999766999718727899999984126-677893689999998521001334333113568 Q gi|254780623|r 300 YIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYV-PRHHNRFSFAQAIRAIGEPIHGQSSDVISMGKL 378 (517) Q Consensus 300 ~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~-~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 378 (517) +++-+|||-| .... -|.. .|..-+-.+.+++.+.+......+. +... T Consensus 1962 ~viHiDFg~i------------------l~~~----------p~~~~~pE~vPFrLT~~iv~~mg~~g~EG~----Fr~~ 2009 (2105) T COG5032 1962 HVIHIDFGFI------------------LFNA----------PGRFPFPEKVPFRLTRNIVEAMGVSGVEGS----FREL 2009 (2105) T ss_pred CEEEEEHHHH------------------HHCC----------CCCCCCCCCCCHHHHHHHHHHCCCCCCHHH----HHHH T ss_conf 7898647879------------------7448----------877797665857654999987387652267----9999 Q ss_pred HHHHHHHHHHCC Q ss_conf 999997545279 Q gi|254780623|r 379 LTMLFEITELFD 390 (517) Q Consensus 379 ~~~l~~~~~~~~ 390 (517) ....+...|++- T Consensus 2010 c~~~~~~LRk~~ 2021 (2105) T COG5032 2010 CETAFRALRKNA 2021 (2105) T ss_pred HHHHHHHHHCCH T ss_conf 999999971068 No 406 >smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities. Probab=94.94 E-value=0.014 Score=39.06 Aligned_cols=85 Identities=16% Similarity=0.119 Sum_probs=49.0 Q ss_pred CCCCHHCCCHHCCCCEEEEECCCCCC-CCHH--HHHHHHCCCHH---HHHHHHHHHHHH-HHHHCCEECCCCCCCEEEEE Q ss_conf 64300001022178335300247863-2426--77332002256---899999999999-89744866178786228980 Q gi|254780623|r 224 GFRVPKIDWNRTERDVITMEWIDGVK-ISDT--EKLRACGHDLE---RLSVTLVQSFLL-HTLRDGFFHADLHPGNLFVD 296 (517) Q Consensus 224 ~v~vP~vy~~~st~~VLvmE~i~G~~-i~d~--~~l~~~~~d~~---~la~~l~~~~~~-qi~~~GfFHaDPHpGNi~v~ 296 (517) .+..++|++ .+++.=.+||+++.. +.++ +-+.....+.. ..-++.+.++.- .++.+-+-=+|-||+||+++ T Consensus 39 ~~~~y~vip--ls~~~GliE~v~~~~sl~~il~~~~~~~~~~~~~~~~~r~~F~~S~A~~s~~~yilglgDRH~~Nili~ 116 (202) T smart00146 39 HLRPYKVIP--TGPKSGLIEVVPNSTTLHQILYDWFKKKFPDPEDYFEARKNFTRSCAGYSVITYILGLGDRHNDNIMLD 116 (202) T ss_pred EEEEEEEEE--CCCCCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE T ss_conf 677447998--359960699818970099999999999883988999999999999999999999821688986637881 Q ss_pred CCCCEEEEECCHHE Q ss_conf 28953574340312 Q gi|254780623|r 297 SKGYIVAVDMGITG 310 (517) Q Consensus 297 ~dg~i~~lDfG~vg 310 (517) .+|+++=+|||.+= T Consensus 117 ~~G~v~HIDfg~~~ 130 (202) T smart00146 117 KTGHLFHIDFGFIL 130 (202) T ss_pred CCCCEEEHHHHHHH T ss_conf 89988842456664 No 407 >COG4857 Predicted kinase [General function prediction only] Probab=94.72 E-value=0.037 Score=35.88 Aligned_cols=131 Identities=17% Similarity=0.275 Sum_probs=76.0 Q ss_pred HHHH-HHHHHHHHHHHHHH----HHHHHHHCCC--CC-CCCCCCHHCCCHHCCCCEEEEECCCCCCCCH-HHHHHHHCCC Q ss_conf 9999-98878886559999----8898720244--67-7664300001022178335300247863242-6773320022 Q gi|254780623|r 192 VRAL-EQVTKMEMDLRLEA----AAFSEMAENT--VK-DQGFRVPKIDWNRTERDVITMEWIDGVKISD-TEKLRACGHD 262 (517) Q Consensus 192 ~~e~-~~~l~~ElD~~~Ea----~n~~~~~~~~--~~-~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d-~~~l~~~~~d 262 (517) +.|| ++++..-.|+..+- ++...|. |- .+ ....++-.+|-+--+.+-.. + + +.. ++.+ ..+.| T Consensus 140 igeFlarTLf~~sDl~m~~k~kK~~vk~Ft-NpELCDItE~LVFtdPyfd~d~Nr~~~-~---~--l~~fVe~L-~~n~d 211 (408) T COG4857 140 IGEFLARTLFRGSDLSMNTKDKKADVKLFT-NPELCDITENLVFTDPYFDADRNRHTI-P---Q--LDPFVEEL-RKNRD 211 (408) T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHC-CCHHHCCHHCEEECCCCCCCCCCCCCC-C---C--CHHHHHHH-HCCCC T ss_conf 999998888742652235076777788757-815414122024147544455453443-2---1--01899998-51862 Q ss_pred HHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEE--CCHHEECCHHHHHHHHHHHHHHHCCCHH Q ss_conf 5689999999999989744866178786228980289535743--4031216989999999766999718727 Q gi|254780623|r 263 LERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVD--MGITGRLSKRERRFLAEILYGFISRDYQ 333 (517) Q Consensus 263 ~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lD--fG~vg~l~~~~r~~l~~l~~a~~~~D~~ 333 (517) .+--|.++-+.|+. .-.-..|||.|.|-||+++.+ .-.|| |...|.+.=+.-.-+++++..+..++.. T Consensus 212 lkvea~kLk~~F~~--~aetLiHGDLHsGSIfvte~e-tkvIDPEFaFYGPmafDiG~~iaNl~~~~~s~~g~ 281 (408) T COG4857 212 LKVEAQKLKHKFMA--YAETLIHGDLHSGSIFVTEKE-TKVIDPEFAFYGPMAFDIGMLIANLWMSLFSQKGF 281 (408) T ss_pred HHHHHHHHHHHHHH--HHHHHHCCCCCCCCEEEECCC-CEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCH T ss_conf 44329999999987--767776066556717750476-34427411003740323989999999999854020 No 408 >cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and Probab=94.64 E-value=0.024 Score=37.36 Aligned_cols=44 Identities=25% Similarity=0.424 Sum_probs=31.1 Q ss_pred HHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECC-HHEECCH Q ss_conf 68999999999998974486617878622898028953574340-3121698 Q gi|254780623|r 264 ERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMG-ITGRLSK 314 (517) Q Consensus 264 ~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG-~vg~l~~ 314 (517) +.+|---+-+|+-|| +|=|.||||++++|++.=|||| +.|.-+. T Consensus 201 ~ScAGYcV~TYiLgI-------gDRHndNIml~~~GhlfHIDFG~iLg~~p~ 245 (366) T cd05175 201 RSCAGYCVATFILGI-------GDRHNSNIMVKDDGQLFHIDFGHFLDHKKK 245 (366) T ss_pred HHHHHHHHHHHHHCC-------CCCCCCCEEECCCCCEEEEECHHHHCCCCC T ss_conf 987899999987024-------666788457989998999861265366988 No 409 >KOG2345 consensus Probab=94.59 E-value=0.028 Score=36.83 Aligned_cols=104 Identities=15% Similarity=0.253 Sum_probs=60.1 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHCC------CHHCCCCEEEEE-CCCCCCCCHHHHHHHHCC--CHHHHHH--HHHHHH Q ss_conf 99998898720244677664300001------022178335300-247863242677332002--2568999--999999 Q gi|254780623|r 206 RLEAAAFSEMAENTVKDQGFRVPKID------WNRTERDVITME-WIDGVKISDTEKLRACGH--DLERLSV--TLVQSF 274 (517) Q Consensus 206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy------~~~st~~VLvmE-~i~G~~i~d~~~l~~~~~--d~~~la~--~l~~~~ 274 (517) .+|+.|.++|...+- ++-+- .|-+..--|+.- |-.|.-.+.+..++..|. +-.++.. .++-.- T Consensus 66 ~rEid~~rkf~s~~v------l~l~dh~l~~~~D~~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~g 139 (302) T KOG2345 66 LREIDNHRKFNSPNV------LRLVDHQLREEKDGKHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRG 139 (302) T ss_pred HHHHHHHHHHCCCCH------HHHHHHHHHHHCCCCEEEEEEEEHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf 999998875079306------88989998750367425899942421661999999876047725799999999999999 Q ss_pred HHHHHHCC--EECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 99897448--661787862289802895357434031216989 Q gi|254780623|r 275 LLHTLRDG--FFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 275 ~~qi~~~G--fFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) ++++-..+ +-|.|.-|+||+...+|..++.|||.+...+-. T Consensus 140 L~~lH~~~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~a~i~ 182 (302) T KOG2345 140 LEALHEKEPPYAHRDIKPANILLSDSGLPVLMDLGSATQAPIQ 182 (302) T ss_pred HHHHHCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCCEE T ss_conf 9997363773101577733167448996479853676515567 No 410 >pfam10707 YrbL-PhoP_reg PhoP regulatory network protein YrbL. This is a family of proteins that are activated by PhoP. PhoP protein controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multicomponent loop in Salmonella where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner. Probab=94.51 E-value=0.45 Score=27.51 Aligned_cols=157 Identities=20% Similarity=0.214 Sum_probs=91.4 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) .|+|.++-=-|| .|..+ ....|||.||+..... +.-..|..++.|.. ..+ ..++|+. T Consensus 7 ~~ia~G~~R~cy---~HP~d--~~~cIKV~~~~~~~~~-------~~~~~~~kk~~~~~-------~~~----~~~rE~~ 63 (199) T pfam10707 7 DLLAQGGQRLVY---AHPLD--ADLCIKVLRPANIAAR-------RRFKGWLKRLLPTS-------RYR----QNLRELK 63 (199) T ss_pred CEEECCCCEEEE---ECCCC--CCEEEEEECCCCHHHC-------CCCCHHHHHHCCCC-------CHH----HHHHHHH T ss_conf 614058971596---78899--7818999552303320-------24431777646432-------057----8899999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECC---CCCCCCHHHH-HHHHCCCHHHHHHHHHHHHHHHH Q ss_conf 5999988987202446776643000010221783--3530024---7863242677-33200225689999999999989 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWI---DGVKISDTEK-LRACGHDLERLSVTLVQSFLLHT 278 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i---~G~~i~d~~~-l~~~~~d~~~la~~l~~~~~~qi 278 (517) +-.. .... ++..+-++|+.|----|.- =+|+|.| +|..--.++. +...+.+ .++ ...++.|.+-+ T Consensus 64 ~y~~------l~~r-~~~~~~~i~r~~G~veT~~G~G~v~elI~d~dG~~a~TL~~yl~~~~~~-~~i-~~aL~~f~~~l 134 (199) T pfam10707 64 EYLR------LSKR-RGIDWSPIPRYYGFVETDLGLGLVTERIRDADGNISPTLEDLLKNGGLT-AAL-REALNEFKRYL 134 (199) T ss_pred HHHH------HHHC-CCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCHHHHHHCCCCC-HHH-HHHHHHHHHHH T ss_conf 9999------8750-5995300244456886487147999988889979672389999718973-999-99999999999 Q ss_pred HHCCEECCCCCCCEEEEEC--C--CCEEEEE-CCHHEECC Q ss_conf 7448661787862289802--8--9535743-40312169 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDS--K--GYIVAVD-MGITGRLS 313 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~--d--g~i~~lD-fG~vg~l~ 313 (517) +.++..-.|++|+||.+.. + .+++++| +|...-++ T Consensus 135 ~~~~Il~~dl~p~NIv~~~~~~~~~~lviIDGlG~~~~iP 174 (199) T pfam10707 135 LDNHIVARDLNPHNIVYGRRSEGEYELVLVDGFGDPTLIP 174 (199) T ss_pred HHCCCEECCCCCCCEEEEECCCCCEEEEEEECCCCCCCCC T ss_conf 9779477789846389997479966899997989712144 No 411 >KOG0579 consensus Probab=94.49 E-value=0.15 Score=31.12 Aligned_cols=88 Identities=15% Similarity=0.202 Sum_probs=53.8 Q ss_pred CHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCE Q ss_conf 000010221783--353002478632426773320022---568999999999998974486617878622898028953 Q gi|254780623|r 227 VPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHD---LERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYI 301 (517) Q Consensus 227 vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d---~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i 301 (517) |-+.|..|--++ .+..||+.|-.++.+-.--..+.. -..++...+++. .-+-...+.|-|..+|||+++-||.| T Consensus 91 ivkLl~ayy~enkLwiliEFC~GGAVDaimlEL~r~LtE~QIqvvc~q~ldAL-n~LHs~~iIHRDLKAGNiL~TldGdi 169 (1187) T KOG0579 91 IVKLLSAYYFENKLWILIEFCGGGAVDAIMLELGRVLTEDQIQVVCYQVLDAL-NWLHSQNIIHRDLKAGNILLTLDGDI 169 (1187) T ss_pred HHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-HHHHHCCHHHHHCCCCCEEEEECCCE T ss_conf 98887777205744898863588407688987446666688999999999998-88764123331114563689724857 Q ss_pred EEEECCHHEECCHH Q ss_conf 57434031216989 Q gi|254780623|r 302 VAVDMGITGRLSKR 315 (517) Q Consensus 302 ~~lDfG~vg~l~~~ 315 (517) -+-|||........ T Consensus 170 rLADFGVSAKn~~t 183 (1187) T KOG0579 170 RLADFGVSAKNKST 183 (1187) T ss_pred EEECCCCCCCCHHH T ss_conf 63003434121257 No 412 >KOG0696 consensus Probab=94.47 E-value=0.15 Score=31.14 Aligned_cols=230 Identities=16% Similarity=0.183 Sum_probs=110.0 Q ss_pred HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 9867--66677888865555021288872368764031046887777889998753211468543346917999999988 Q gi|254780623|r 121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV 198 (517) Q Consensus 121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 198 (517) +.|+ .-++-+|.|-|-.|.-+ | +.+--||||.+-+|--+ ..|... .+.++.+-.+.. .++ |-. T Consensus 349 tDFnFl~VlGKGSFGKVlLaerk-g-tdELyAiKiLkKDViiQ-dDDvec-----tm~EKrvLAL~~-kpp-----FL~- 413 (683) T KOG0696 349 TDFNFLMVLGKGSFGKVLLAERK-G-TDELYAIKILKKDVIIQ-DDDVEC-----TMVEKRVLALPG-KPP-----FLV- 413 (683) T ss_pred CCCCEEEEECCCCCCEEEEECCC-C-CCHHHHHHHHCCCEEEE-CCCCCC-----EEHHHHHEECCC-CCC-----HHH- T ss_conf 25304788616762306651126-8-50322200010234664-486422-----102333100589-996-----578- Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCC--CHH---HHHHHHHHH Q ss_conf 788865599998898720244677664300001022178335300247863242677332002--256---899999999 Q gi|254780623|r 199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGH--DLE---RLSVTLVQS 273 (517) Q Consensus 199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~--d~~---~la~~l~~~ 273 (517) ++..-|...+.++ .||||+.|--+-- .+...|- ++. .-|+.-+.. T Consensus 414 ---------------qlHScFQTmDRLy-------------FVMEyvnGGDLMy--hiQQ~GkFKEp~AvFYAaEiaigL 463 (683) T KOG0696 414 ---------------QLHSCFQTMDRLY-------------FVMEYVNGGDLMY--HIQQVGKFKEPVAVFYAAEIAIGL 463 (683) T ss_pred ---------------HHHHHHHHHHHEE-------------EEEEEECCCHHHH--HHHHHCCCCCCHHHHHHHHHHHHH T ss_conf ---------------8888753221326-------------5788724741506--898755647732202258887776 Q ss_pred HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEE--CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCH Q ss_conf 99989744866178786228980289535743403121--6989999999766999718727899999984126677893 Q gi|254780623|r 274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR--LSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNR 351 (517) Q Consensus 274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~--l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~ 351 (517) |+ +-..|..--|..--|+|++.+|.|-+.||||+.+ .+..+...+. .+-|| ++-.++.---....+|- T Consensus 464 FF--Lh~kgIiYRDLKLDNvmLd~eGHiKi~DFGmcKEni~~~~TTkTFC------GTPdY--iAPEIi~YqPYgksvDW 533 (683) T KOG0696 464 FF--LHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIFDGVTTKTFC------GTPDY--IAPEIIAYQPYGKSVDW 533 (683) T ss_pred HH--HHCCCEEEEECCCCCEEECCCCCEEEEECCCCCCCCCCCCCEEEEC------CCCCC--CCCCEEEECCCCCCHHH T ss_conf 53--2027716640321206763678567613364202466883013203------88754--66315774466652127 Q ss_pred HHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH Q ss_conf 68999999852100133433311356899999754527971288899999999998 Q gi|254780623|r 352 FSFAQAIRAIGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVV 407 (517) Q Consensus 352 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~~~ll~r~l~~l 407 (517) =.|---+.+++. ...|++.-+-.++++.+.+---.|+-.+..|-+-+.|+++|- T Consensus 534 Wa~GVLLyEmla--GQpPFdGeDE~elF~aI~ehnvsyPKslSkEAv~ickg~ltK 587 (683) T KOG0696 534 WAFGVLLYEMLA--GQPPFDGEDEDELFQAIMEHNVSYPKSLSKEAVAICKGLLTK 587 (683) T ss_pred HHHHHHHHHHHC--CCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC T ss_conf 888999999975--899989977799999998705767610049999999888615 No 413 >KOG0586 consensus Probab=94.43 E-value=0.03 Score=36.60 Aligned_cols=182 Identities=19% Similarity=0.176 Sum_probs=111.6 Q ss_pred HHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 67666778888655550212888723687640310468877778899987532114685433469179999999887888 Q gi|254780623|r 123 FDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME 202 (517) Q Consensus 123 fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E 202 (517) +..-|+++.-|-|--|+-.+ +|.+||+|+..-. ..+...... + T Consensus 60 i~~tig~g~f~~V~La~~~~--t~~~VaiK~idkt---------------------------~ln~~~~~k-----~--- 102 (596) T KOG0586 60 IIKTIGKGNFAKVKLARHIL--TGTEVAIKIIDKT---------------------------QLNPSKRQK-----L--- 102 (596) T ss_pred EEEEECCCEEEEEEEEEECC--CCCEEEEEEEHHC---------------------------CCCHHHHHH-----H--- T ss_conf 42101264057777667418--8862788871000---------------------------247377888-----8--- Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-- Q ss_conf 655999988987202446776643000010221783--3530024786324267733200225689999999999989-- Q gi|254780623|r 203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT-- 278 (517) Q Consensus 203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi-- 278 (517) .+|.+-|... +.|. |=++|..+.|+. .|||||.-|.-+-| -+.+.|.+.+..| +.+|.|+ T Consensus 103 ---~rev~imk~l-----~HPn--Ivkl~~v~~t~~~lylV~eya~~ge~~~--yl~~~gr~~e~~a----r~~F~q~vs 166 (596) T KOG0586 103 ---GREVDIMKSL-----NHPN--IVKLFSVIETEATLYLVMEYASGGELFD--YLVKHGRMKEKEA----RAKFRQIVS 166 (596) T ss_pred ---HHHHHHHHHC-----CCCC--EEEEEEEEEECCEEEEEEEECCCCHHHH--HHHHCCCCHHHHH----HHHHHHHHH T ss_conf ---9999998714-----8832--0123324420561589999505721789--9986164013566----666677888 Q ss_pred -----HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHH Q ss_conf -----744866178786228980289535743403121698999999976699971872789999998412667789368 Q gi|254780623|r 279 -----LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFS 353 (517) Q Consensus 279 -----~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~ 353 (517) -.+++.|.|.|+-|++++.+-.+=+-|||.-..++.. .++....---...+-+.+.......+.+|.-. T Consensus 167 aveYcH~k~ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~~------~~lqt~cgsppyAaPEl~~g~~y~gpe~D~Ws 240 (596) T KOG0586 167 AVEYCHSKNIVHRDLKAENILLDENMNIKIADFGFSTFFDYG------LMLQTFCGSPPYAAPELFNGKKYDGPEVDIWS 240 (596) T ss_pred HHHHHHHCCEECCCCCHHHCCCCCCCCEEEECCCCCEEECCC------CCCCCCCCCCCCCCHHHHCCCCCCCCCEEHHH T ss_conf 999875314434655365424455455145124431032222------10135678987567676467646775300141 Q ss_pred HHHHHHHHHH Q ss_conf 9999998521 Q gi|254780623|r 354 FAQAIRAIGE 363 (517) Q Consensus 354 ~~~~i~~~~~ 363 (517) +...+..++. T Consensus 241 lgvvly~LV~ 250 (596) T KOG0586 241 LGVVLYALVE 250 (596) T ss_pred HHHHHEEEEE T ss_conf 3212400121 No 414 >TIGR01767 MTRK 5-methylthioribose kinase; InterPro: IPR009212 Members of this family are 5-methylthioribose kinases (2.7.1.100 from EC) that catalyse phosphorylation of 5-methylthioribose (MTR), a step in the recycling of methionine from 5'-methylthioadenosine, a co-product of polyamine biosynthesis. The preceding step of methylthioadenosine (MTA) hydrolysis to MTR is catalysed by 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/AdoHcy) nucleosidase (PIRSF006618 from PIRSF). Bacillus subtilis MtnK (formerly YkrT) and Klebsiella pneumoniae MtrK have been experimentally characterised. Klebsiella pneumoniae MtrK expression is regulated by methionine . As this enzyme is absent in mammals, it has been considered a target for rational drug design.; GO: 0046522 S-methyl-5-thioribose kinase activity, 0009086 methionine biosynthetic process. Probab=94.40 E-value=0.1 Score=32.52 Aligned_cols=198 Identities=20% Similarity=0.294 Sum_probs=125.2 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEEC--CHHHHHHHHHHHHHHHHHHH---HCCCCCCCC Q ss_conf 4047889999998676667788886555502128887236876403--10468877778899987532---114685433 Q gi|254780623|r 110 SALKAPIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIR--PGVRKRFFRDIQVMYLIARI---QEKLLPSMR 184 (517) Q Consensus 110 ~elg~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~r--P~i~~~i~~Dl~~l~~~~~~---~~~~~~~~~ 184 (517) +.|.-+++.- .|| ++|=|+|--++= ..|+||=| |+..-.|.+||.-=..++|- -....|... T Consensus 37 eSWPLtldRa--r~E---~~aL~rq~~h~P--------~~vp~i~hfD~e~Av~vMEdLs~Ph~I~R~~LI~g~~yP~~a 103 (386) T TIGR01767 37 ESWPLTLDRA--RLE---ASALVRQEEHAP--------QLVPKIYHFDEELAVIVMEDLSDPHKILRKELIEGEQYPQLA 103 (386) T ss_pred CCCCCHHHHH--HHH---HHHHHHHHHCCC--------CCCCEEEEECCCCEEEHHHHCCCHHHHHHHHHHCCCCCHHHH T ss_conf 7688626789--998---999886430378--------873337861686301020231615789987763243113899 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHH Q ss_conf 46917999999988788865599998898720244677-------66430000102217833530024786324267733 Q gi|254780623|r 185 RLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKD-------QGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLR 257 (517) Q Consensus 185 ~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~-------~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~ 257 (517) + .+-+=++++|..-=||..+-+.-+.-=+.|.++ ..+.+-.||-+.-+.+- .-| ++ ++++.|. T Consensus 104 r----~iG~fla~tLF~~SD~~l~pk~kKa~va~F~nnpelCdITE~LvF~DPyfdh~~N~~-~~e-L~----~~Va~Lr 173 (386) T TIGR01767 104 R----DIGEFLAKTLFRSSDYALEPKEKKADVAQFINNPELCDITEDLVFSDPYFDHERNDY-EEE-LE----AVVAELR 173 (386) T ss_pred H----HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHCCCC-CHH-HH----HHHHHHH T ss_conf 9----998998888620255321754778899863178334445453004885100112688-143-43----8999860 Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEE--CCHHEECCHHHHHHHHHHHHHHHCCCHHH Q ss_conf 200225689999999999989744866178786228980289535743--40312169899999997669997187278 Q gi|254780623|r 258 ACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVD--MGITGRLSKRERRFLAEILYGFISRDYQR 334 (517) Q Consensus 258 ~~~~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lD--fG~vg~l~~~~r~~l~~l~~a~~~~D~~~ 334 (517) .. .+.|-=|.+|=+.|+..- .-..|||.|.|-|||. ++.+=.|| ||--|-+.=+.=..++++++....+++.. T Consensus 174 ~d-~~lK~eaa~LK~~F~a~A--EtLlHGDlHsGSIfv~-e~etk~IDpEFafyGPigFDiG~~iaNl~ln~~s~~G~~ 248 (386) T TIGR01767 174 DD-ADLKVEAAKLKHSFLASA--ETLLHGDLHSGSIFVA-ETETKVIDPEFAFYGPIGFDIGTLIANLLLNFLSRDGAE 248 (386) T ss_pred CC-CHHHHHHHHHHHHHHHHH--HHHHCCCHHCCCEEEE-CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC T ss_conf 59-512299999757877412--5774042102524353-473011145311317607789999999999852889866 No 415 >COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning] Probab=94.36 E-value=0.056 Score=34.50 Aligned_cols=202 Identities=15% Similarity=0.078 Sum_probs=101.8 Q ss_pred CCCCHHHHHHHHH-HHCCCCHHHH-HHHHHH-HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHH Q ss_conf 7899899999875-4047889999-998676-667788886555502128887236876403104688777788999875 Q gi|254780623|r 97 DFFPTNTARLSVA-SALKAPIEEL-YCEFDD-PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIA 173 (517) Q Consensus 97 pp~~~~~v~~~ie-~elg~~~~~~-F~~fde-PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~ 173 (517) .--|....-+.++ +.-|++...+ |..+++ |+.-++.+-++.|++.+.++--..+.++--|+.. ...|-.+++.+. T Consensus 129 k~k~sh~slqk~k~rrk~~~sQ~~ns~~kk~~pvpDqvs~dk~Q~k~~~stsl~~l~s~~~l~~n~--~d~d~~nl~QI~ 206 (488) T COG5072 129 KHKPSHRSLQKVKQRRKGPFSQFVNSQTKKICPVPDQVSSDKIQAKLADSTSLVSLVSPFGLPGNA--QDADVLNLVQIL 206 (488) T ss_pred CCCCHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCC--CCCCHHHHHHHH T ss_conf 457047899988876028730000366655456863101434430112576301013545678873--222358899999 Q ss_pred HHHC--CC---------CCCCCCCCHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHCCCCCCC Q ss_conf 3211--46---------854334691799999998878886559-------------------99988987202446776 Q gi|254780623|r 174 RIQE--KL---------LPSMRRLCFSAVVRALEQVTKMEMDLR-------------------LEAAAFSEMAENTVKDQ 223 (517) Q Consensus 174 ~~~~--~~---------~~~~~~~~~~~~~~e~~~~l~~ElD~~-------------------~Ea~n~~~~~~~~~~~~ 223 (517) .+.. .+ .|....+++++. ..+.....+|+++. .|....+...-.+.+.+ T Consensus 207 q~~dvk~fan~~~v~~vlgl~~~ln~~~s-~qlssn~~q~~i~kkvs~g~~~~~~~d~~fls~~ele~l~L~qw~~~g~~ 285 (488) T COG5072 207 QWCDVKGFANLHQVVVVLGLYPSLNLEES-DQLSSNNWQENICKKVSLGSTQDYTVDCLFLSLTELEHLELRQWRECGSV 285 (488) T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCHHH-HHHHHHCCHHEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCH T ss_conf 88516654364413688526665565035-67765333110411214664001212113320132324666520211604 Q ss_pred CCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HHHHH--HCCEECCCCCCCEEEEEC Q ss_conf 64300001022178--3353002478632426773320022568999999999--99897--448661787862289802 Q gi|254780623|r 224 GFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSF--LLHTL--RDGFFHADLHPGNLFVDS 297 (517) Q Consensus 224 ~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~--~~qi~--~~GfFHaDPHpGNi~v~~ 297 (517) ..--|.||. +-.. -+++|++ .|.+++-+...+ -++... .+... +--+. ..-|=|-|.|-|||+++ T Consensus 286 ~~e~~~vv~-~de~~y~yl~~kd-hgt~is~ik~~~-----~~e~ls-ff~s~~sil~~lekkf~fehrnlt~~niLId- 356 (488) T COG5072 286 FLETLKVVS-LDETLYLYLHFKD-HGTPISIIKADR-----SEEELS-FFWSCISILDILEKKFPFEHRNLTLDNILID- 356 (488) T ss_pred HHHCCEEEE-CCCCEEEEEEEEC-CCCEEEEEECCC-----HHHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE- T ss_conf 442314772-4782699999705-896023231103-----799999-9998888876655338763245653322340- Q ss_pred CCCEEEEECCHHE Q ss_conf 8953574340312 Q gi|254780623|r 298 KGYIVAVDMGITG 310 (517) Q Consensus 298 dg~i~~lDfG~vg 310 (517) .|.+.+|||-+.. T Consensus 357 ~GnvtLIDfklsR 369 (488) T COG5072 357 EGNVTLIDFKLSR 369 (488) T ss_pred CCCEEEEEEEEEE T ss_conf 5854899866530 No 416 >PRK11768 serine/threonine protein kinase; Provisional Probab=94.33 E-value=0.02 Score=37.99 Aligned_cols=156 Identities=18% Similarity=0.213 Sum_probs=68.3 Q ss_pred HHHHHEECCCCCCEEEEEEECCH--HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH-HHHHHHH--------HHHHH-- Q ss_conf 55550212888723687640310--46887777889998753211468543346917-9999999--------88788-- Q gi|254780623|r 135 VHPAVVHDINGYRKVAVKIIRPG--VRKRFFRDIQVMYLIARIQEKLLPSMRRLCFS-AVVRALE--------QVTKM-- 201 (517) Q Consensus 135 Vh~A~l~d~~~g~~VaVKV~rP~--i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~-~~~~e~~--------~~l~~-- 201 (517) ||.-.+-| +..||+|.=||| -.++|..+-+-..-++.. =+|....+.+. +.+-++. +.--+ T Consensus 41 VYQvg~Ed---~~~~VaKFYRP~RWS~~QIlEEH~F~~eL~~~---EIPVVaPl~~~G~TL~~~~Gf~fAlfpr~gGrap 114 (326) T PRK11768 41 VYQFGDED---GRRVVAKFYRPERWSDAQILEEHQFALELAEA---EIPVVAPLAFNGETLHEHQGFRFALFPRRGGRAP 114 (326) T ss_pred EEEEEECC---CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHC---CCCCCCCEEECCCCHHHCCCEEEEEECCCCCCCC T ss_conf 16864248---98479985188878889999999999999976---9981387523872010008989998514368798 Q ss_pred HH----HHHHHHHHHHHHH-----CCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHH Q ss_conf 86----5599998898720-----24467766430000102217833530024786324267733200225689999999 Q gi|254780623|r 202 EM----DLRLEAAAFSEMA-----ENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQ 272 (517) Q Consensus 202 El----D~~~Ea~n~~~~~-----~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~ 272 (517) |+ ++..=++.+-|+. +.|+..+.+-+-.. -.-+-+-++.-.||+. .++. ....+++.++. T Consensus 115 Eldn~d~L~~lGr~lgRiH~vG~~~~f~hRp~l~~~~~-~~~~~~~L~~~~~iP~-------~l~~---~y~~~~~~ll~ 183 (326) T PRK11768 115 ELDNLDQLEWVGRFLGRIHQVGATRPFEHRPTLDLQEY-GHEPRQWLLDSDLIPS-------SLRP---AYLSAADQLLA 183 (326) T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH-HHHHHHHHHHCCCCCH-------HHHH---HHHHHHHHHHH T ss_conf 98987999999999999998601478854766788888-8889999986698898-------9999---99999999999 Q ss_pred HHHHHHHHCC----EECCCCCCCEEEEECCCCEEEEECCH Q ss_conf 9999897448----66178786228980289535743403 Q gi|254780623|r 273 SFLLHTLRDG----FFHADLHPGNLFVDSKGYIVAVDMGI 308 (517) Q Consensus 273 ~~~~qi~~~G----fFHaDPHpGNi~v~~dg~i~~lDfG~ 308 (517) ..-.+.-... =.|||.|||||+..+| ...|+||-= T Consensus 184 ~v~~~~~~~~~~~iRlHGDCH~GNILwrdd-~p~fVDfDD 222 (326) T PRK11768 184 AVEAHWARAPFRLLRLHGDCHPGNILWTDD-GPHFVDLDD 222 (326) T ss_pred HHHHHHCCCCCCEEEEECCCCCCCCCCCCC-CCEEEECCC T ss_conf 999985218852244106767554113289-864874400 No 417 >KOG1035 consensus Probab=94.32 E-value=0.08 Score=33.28 Aligned_cols=196 Identities=17% Similarity=0.233 Sum_probs=95.3 Q ss_pred CCHHHHHHHHHH--HHHHHHHHHHHHHHEECCCCCCEEEEEEEC-CHHHHHHHHHHHHHHHHHHHHC--------CCCCC Q ss_conf 889999998676--667788886555502128887236876403-1046887777889998753211--------46854 Q gi|254780623|r 114 APIEELYCEFDD--PIAAASIAQVHPAVVHDINGYRKVAVKIIR-PGVRKRFFRDIQVMYLIARIQE--------KLLPS 182 (517) Q Consensus 114 ~~~~~~F~~fde--PlasASiaQVh~A~l~d~~~g~~VaVKV~r-P~i~~~i~~Dl~~l~~~~~~~~--------~~~~~ 182 (517) ......+.+|+| +++-|--|+|++++=+= .|++-|||=.+ +.-.......++=.+.+|++-. .|+.. T Consensus 472 r~~SRY~~DFEEL~lLGkGGFG~VvkVRNKl--DGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs 549 (1351) T KOG1035 472 RQFSRYLNDFEELELLGKGGFGSVVKVRNKL--DGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVES 549 (1351) T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEEEECC--CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCC T ss_conf 1024576664899872577775279986426--65101100125756777889999999998623786534311334304 Q ss_pred CCCCCHHHHHHHHHHH------HHHHHHHHHHHH------HHHHHHCCCCCCCCCCCHHC-C------------------ Q ss_conf 3346917999999988------788865599998------89872024467766430000-1------------------ Q gi|254780623|r 183 MRRLCFSAVVRALEQV------TKMEMDLRLEAA------AFSEMAENTVKDQGFRVPKI-D------------------ 231 (517) Q Consensus 183 ~~~~~~~~~~~e~~~~------l~~ElD~~~Ea~------n~~~~~~~~~~~~~v~vP~v-y------------------ 231 (517) .....-.+++..-... ..++.|...+.. +.....++..+...-+.|+. . T Consensus 550 ~~~~~~~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~ 629 (1351) T KOG1035 550 TAELTVLEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRN 629 (1351) T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 77655444223535553046777554203324678865676421025667655334653224666678531000003334 Q ss_pred -------------------------CHHCCCC----------EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf -------------------------0221783----------35300247863242677332002256899999999999 Q gi|254780623|r 232 -------------------------WNRTERD----------VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLL 276 (517) Q Consensus 232 -------------------------~~~st~~----------VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~ 276 (517) .+-|.+. -+=|||++-....++-.-...+. ....+-++++-.+. T Consensus 630 ~S~tS~~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~~~-~~d~~wrLFreIlE 708 (1351) T KOG1035 630 LSNTSDSEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHFNS-QRDEAWRLFREILE 708 (1351) T ss_pred CCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHH T ss_conf 56532347764457625555413355776665531224438988775436669999987235320-26799999999999 Q ss_pred ---HHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC Q ss_conf ---897448661787862289802895357434031216 Q gi|254780623|r 277 ---HTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL 312 (517) Q Consensus 277 ---qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l 312 (517) -|-.-|..|=|.-|.|||+++++.+.+-|||....+ T Consensus 709 GLaYIH~~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~ 747 (1351) T KOG1035 709 GLAYIHDQGIIHRDLKPRNIFLDSRNSVKIGDFGLATDL 747 (1351) T ss_pred HHHHHHHCCEEECCCCCCEEEECCCCCEEECCCCCCHHH T ss_conf 999987374341367754267758898001663220336 No 418 >KOG1027 consensus Probab=94.32 E-value=0.13 Score=31.77 Aligned_cols=126 Identities=16% Similarity=0.206 Sum_probs=71.4 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHH Q ss_conf 33469179999999887888655999988987202446---776643000010221783353002478632426773320 Q gi|254780623|r 183 MRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTV---KDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRAC 259 (517) Q Consensus 183 ~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~---~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~ 259 (517) .|.+-...++.|+.....+|++..+|-.+....=+.|. +....+| --|+|..+ -.+|++.- ..|.+ ... T Consensus 533 ~R~VAVKrll~e~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YI---alELC~~s--L~dlie~~-~~d~~--~~~ 604 (903) T KOG1027 533 GREVAVKRLLEEFFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYI---ALELCACS--LQDLIESS-GLDVE--MQS 604 (903) T ss_pred CCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEE---EEHHHHHH--HHHHHHCC-CCCHH--HCC T ss_conf 922059988667678999999988751579863789763157865899---80575610--99998423-10012--125 Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEEC---CC--CEEEEECCHHEECCHHHH Q ss_conf 02256899999999999897448661787862289802---89--535743403121698999 Q gi|254780623|r 260 GHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDS---KG--YIVAVDMGITGRLSKRER 317 (517) Q Consensus 260 ~~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~---dg--~i~~lDfG~vg~l~~~~r 317 (517) .+++..+....+.. +..+---|..|-|.-|.||+|.. +| +..+=|||.+.+++.... T Consensus 605 ~i~~~~~l~q~~~G-laHLHsl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~s 666 (903) T KOG1027 605 DIDPISVLSQIASG-LAHLHSLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGKS 666 (903) T ss_pred CCCHHHHHHHHHHH-HHHHHHCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCC T ss_conf 41289999999888-888775252104678734899714788625689604652013689941 No 419 >cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P Probab=94.30 E-value=0.03 Score=36.63 Aligned_cols=29 Identities=31% Similarity=0.614 Sum_probs=24.7 Q ss_pred CCCCCCEEEEECCCCEEEEECC-HHEECCH Q ss_conf 7878622898028953574340-3121698 Q gi|254780623|r 286 ADLHPGNLFVDSKGYIVAVDMG-ITGRLSK 314 (517) Q Consensus 286 aDPHpGNi~v~~dg~i~~lDfG-~vg~l~~ 314 (517) +|=|.||||++++|++.=|||| +.|..++ T Consensus 217 gDRHndNIml~~~GhlfHIDFG~iLG~~~~ 246 (366) T cd05165 217 GDRHNDNIMVKETGQLFHIDFGHILGNYKS 246 (366) T ss_pred CCCCCCCEEECCCCCEEEEEHHHHHCCCCC T ss_conf 666788456889999999863466367887 No 420 >KOG0666 consensus Probab=94.25 E-value=0.096 Score=32.67 Aligned_cols=187 Identities=18% Similarity=0.233 Sum_probs=103.8 Q ss_pred CHHHHHHHHH-HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH Q ss_conf 8999999867-666778888655550212888723687640310468877778899987532114685433469179999 Q gi|254780623|r 115 PIEELYCEFD-DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVR 193 (517) Q Consensus 115 ~~~~~F~~fd-ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~ 193 (517) .++.+|..-- .-|+++.-|-||+|+-++.+.-+ ..+.+ ++.+ +. ...... T Consensus 19 rve~l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr---------------~k~yA-iKkf----k~-~kd~tG-------- 69 (438) T KOG0666 19 RVEDLFEYEGIGKIGRGTYGKVYKAVRKNTNDKR---------------TKEYA-IKKF----KG-EKDGTG-------- 69 (438) T ss_pred HHHHHHHHHCCCEECCCCCCEEEEEEECCCCCCC---------------CHHHH-HHHH----HC-CCCCCC-------- T ss_conf 4788876303231246654125662005687533---------------21668-9887----25-567787-------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 99988788865599998898720244677664300001022178335300247863242677332002256899999999 Q gi|254780623|r 194 ALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQS 273 (517) Q Consensus 194 e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~ 273 (517) ++.+--+|+-+.+|.+| ..-|..-+|+-..-..--|+.||-+-- +-.+-..+.... .+.+-..++++ T Consensus 70 -iS~SAcREiaL~REl~h----------~nvi~Lv~Vfl~~d~~v~l~fdYAEhD-L~~II~fHr~~~-~~~lp~~mvKs 136 (438) T KOG0666 70 -ISMSACREIALLRELKH----------PNVISLVKVFLSHDKKVWLLFDYAEHD-LWHIIKFHRASK-AKQLPRSMVKS 136 (438) T ss_pred -CCHHHHHHHHHHHHHCC----------CCEEEHHHHHHCCCCEEEEEEHHHHHH-HHHHHHHHCCCH-HCCCCHHHHHH T ss_conf -18999999999987528----------761006677622674499982144406-999998742310-02388889999 Q ss_pred HHHHHHH-------CCEECCCCCCCEEEEECC----CCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCH------HHHH Q ss_conf 9998974-------486617878622898028----9535743403121698999999976699971872------7899 Q gi|254780623|r 274 FLLHTLR-------DGFFHADLHPGNLFVDSK----GYIVAVDMGITGRLSKRERRFLAEILYGFISRDY------QRVA 336 (517) Q Consensus 274 ~~~qi~~-------~GfFHaDPHpGNi~v~~d----g~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~------~~~~ 336 (517) .++|++. +=+.|-|.-|.||+|+-| |++-+-|+|.. +.+.+.+.-+.+.|. .++- T Consensus 137 ilwQil~Gv~YLH~NWvlHRDLKPaNIlvmgdgperG~VKIaDlGla--------R~~~~plkpl~s~d~VVVTiWYRAP 208 (438) T KOG0666 137 ILWQILDGVHYLHSNWVLHRDLKPANILVMGDGPERGRVKIADLGLA--------RLFNNPLKPLASLDPVVVTIWYRAP 208 (438) T ss_pred HHHHHHHHHHHHHHCCEEECCCCCCEEEEECCCCCCCEEEEECCCHH--------HHHHCCCCCCCCCCCEEEEEEECCH T ss_conf 99999733678763201133677110799535776672686131178--------8762514321148966999981386 Q ss_pred HHHHHHHCCCCCCCH Q ss_conf 999984126677893 Q gi|254780623|r 337 DVHFEAGYVPRHHNR 351 (517) Q Consensus 337 ~~l~~lg~~~~~~d~ 351 (517) +.++..-..++.+|. T Consensus 209 ELLLGa~hYT~AiDv 223 (438) T KOG0666 209 ELLLGARHYTKAIDV 223 (438) T ss_pred HHHCCCCCCCCHHHH T ss_conf 876055445425566 No 421 >cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de Probab=94.04 E-value=0.036 Score=36.03 Aligned_cols=38 Identities=24% Similarity=0.410 Sum_probs=28.3 Q ss_pred HHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHH Q ss_conf 899999999999897448661787862289802895357434031 Q gi|254780623|r 265 RLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGIT 309 (517) Q Consensus 265 ~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~v 309 (517) .+|.--+-+|+-| =+|=|.||||++++|++.=||||-+ T Consensus 199 ScAgYcV~TYvLg-------IgDRHndNIml~~~GhlfHIDFG~i 236 (362) T cd05173 199 SCAGYCVATYVLG-------IGDRHSDNIMVRKNGQLFHIDFGHI 236 (362) T ss_pred HHHHHHHHHHHHC-------CCCCCCCCEEECCCCEEEEEECHHH T ss_conf 8888999998602-------4666788557989873999874565 No 422 >cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Probab=93.97 E-value=0.044 Score=35.34 Aligned_cols=83 Identities=18% Similarity=0.125 Sum_probs=46.8 Q ss_pred CCCCCHHCCCHHCCCCEEEEECCCCCCC-CHH--HHHHHHCCC-------HHHHHHHHHHHHHHHHHHCCEECCCCCCCE Q ss_conf 6643000010221783353002478632-426--773320022-------568999999999998974486617878622 Q gi|254780623|r 223 QGFRVPKIDWNRTERDVITMEWIDGVKI-SDT--EKLRACGHD-------LERLSVTLVQSFLLHTLRDGFFHADLHPGN 292 (517) Q Consensus 223 ~~v~vP~vy~~~st~~VLvmE~i~G~~i-~d~--~~l~~~~~d-------~~~la~~l~~~~~~qi~~~GfFHaDPHpGN 292 (517) -.+..++|.+ .++++=..||++|..- .+. ..+.....+ ++..+..++-.. +..+=+-=+|=||+| T Consensus 65 l~~~~y~vip--ls~~~gliE~v~~~~tl~~~l~~~~~~~~~~~~~~~~~r~~F~~S~A~~s---v~~yvlgigDRH~~N 139 (219) T cd00142 65 LFLTTYSVIP--LSPRSGLIEVVPGSVTLEDDLSKWLKRKSPDEDEWQEARENFISSLAGYS---VAGYILGIGDRHPDN 139 (219) T ss_pred EEEEEEEEEE--ECCCCEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH---HHHHHEECCCCCCCC T ss_conf 4887016998--07982589987997408999999999888397999999999999999999---999831326899871 Q ss_pred EEEEC-CCCEEEEECCHHE Q ss_conf 89802-8953574340312 Q gi|254780623|r 293 LFVDS-KGYIVAVDMGITG 310 (517) Q Consensus 293 i~v~~-dg~i~~lDfG~vg 310 (517) |+++. +|+++-+|||.+- T Consensus 140 Ili~~~tG~v~hIDFg~~f 158 (219) T cd00142 140 IMIDLDTGKLFHIDFGFIF 158 (219) T ss_pred EEEECCCCCEEEEEEHHHH T ss_conf 8898388869999525542 No 423 >PTZ00296 choline kinase; Provisional Probab=93.88 E-value=0.59 Score=26.59 Aligned_cols=220 Identities=13% Similarity=0.155 Sum_probs=92.4 Q ss_pred HHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHH-HHH-HHHHHHHHHHHHHHHEECCC------CC Q ss_conf 71004598899999998874887899899999875404788999999-867-66677888865555021288------87 Q gi|254780623|r 75 ATRPDLIGKKLSEDLALLQDKMDFFPTNTARLSVASALKAPIEELYC-EFD-DPIAAASIAQVHPAVVHDIN------GY 146 (517) Q Consensus 75 stR~Dllp~~~~~eL~~Lqd~vpp~~~~~v~~~ie~elg~~~~~~F~-~fd-ePlasASiaQVh~A~l~d~~------~g 146 (517) +..-|+ |.-++|++.|.|.. .++.+-.+.. ..|..+=. .+. .-|-||---|.....|...+ -. T Consensus 66 ~~~~~~--~~~~~~fs~l~~p~------~i~~~c~~~v-~~w~~~~~~~~~v~qi~~gltnqlf~v~~~~~~~~~~~~~~ 136 (439) T PTZ00296 66 NKKNDI--PLCAQEFSDLTDPL------YIKKICLEKV-HDWHHCNEDDLCVKQILSGLTNQLFEVGIKEDTAIEYHIIR 136 (439) T ss_pred CCCCCC--CCHHHHHHHCCCCH------HHHHHHHHHC-CCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCC T ss_conf 056787--50377777436709------8999998528-87455887783399987421352289986314454565401 Q ss_pred CEEEEEEECCHHHHHHHHHHH--HHHHHHHHHCCCCCCCCCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHC Q ss_conf 236876403104688777788--999875321146854334691799999998-------87888655999988987202 Q gi|254780623|r 147 RKVAVKIIRPGVRKRFFRDIQ--VMYLIARIQEKLLPSMRRLCFSAVVRALEQ-------VTKMEMDLRLEAAAFSEMAE 217 (517) Q Consensus 147 ~~VaVKV~rP~i~~~i~~Dl~--~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~-------~l~~ElD~~~Ea~n~~~~~~ 217 (517) ++|-|.|==+|++..|.++-. +++.+.+. ...|.+-..-+.+-++||-. .+...-=...=|+++.+|+. T Consensus 137 ~kVLvRIYG~~td~fiDR~~E~~vF~lLSe~--glGPKLyG~FpnGRIEEFI~grtLtt~dLrdP~IS~~IA~kLaefH~ 214 (439) T PTZ00296 137 RHVLFRIYGKDVDALYNPISEFEVYKTMSKY--KIAPLLLNTFDGGRIEEWLYGDPLRIDDLKNKSILIGIANVLGKFHT 214 (439) T ss_pred CEEEEEECCCCCCEEECHHHHHHHHHHHHHC--CCCCEEEEECCCCEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHHC T ss_conf 5489997369955476728999999999867--99980799838956787407842796785698899999999999738 Q ss_pred CCCCCCCCCCHHCCCHHCCCCEEEEE-CCCCCCCCHHHHHHHHCCCHHHHH---HHHHH--HHHHHH----HHCCEECCC Q ss_conf 44677664300001022178335300-247863242677332002256899---99999--999989----744866178 Q gi|254780623|r 218 NTVKDQGFRVPKIDWNRTERDVITME-WIDGVKISDTEKLRACGHDLERLS---VTLVQ--SFLLHT----LRDGFFHAD 287 (517) Q Consensus 218 ~~~~~~~v~vP~vy~~~st~~VLvmE-~i~G~~i~d~~~l~~~~~d~~~la---~~l~~--~~~~qi----~~~GfFHaD 287 (517) .- .....|.- |+-+..-.-.|+ |... +.....+.....+..... +.... ....++ ---.|=|-| T Consensus 215 l~---~p~~~p~~-wdr~p~l~~~m~kW~~~--l~~~~~~~~~~~dl~~~~~e~e~~~~~l~l~s~l~~~~~~vvFCHND 288 (439) T PTZ00296 215 LS---RKRHLPEH-WDKTPCIFKMMDKWKLA--LSKYKNIDKVKLDIHKYIKESEKFIKFIKIYSKIDNIANAIVFCHND 288 (439) T ss_pred CC---CCCCCCCC-CCCCCHHHHHHHHHHHH--HHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC T ss_conf 76---65678987-65423599999999998--42145443200218777778999999999986412556873554132 Q ss_pred CCCCEEEEECCCCEEEEECCHHEEC Q ss_conf 7862289802895357434031216 Q gi|254780623|r 288 LHPGNLFVDSKGYIVAVDMGITGRL 312 (517) Q Consensus 288 PHpGNi~v~~dg~i~~lDfG~vg~l 312 (517) ...|||+ ..+..+.||||--+|.= T Consensus 289 L~~~NIl-~~~~~l~~IDfEY~~yN 312 (439) T PTZ00296 289 LQENNII-NTNKCLRLIDFEYSGFN 312 (439) T ss_pred CCCCCCC-CCCCCEEEEEECCCCCC T ss_conf 5302353-58884799985035667 No 424 >KOG0664 consensus Probab=93.76 E-value=0.13 Score=31.74 Aligned_cols=175 Identities=19% Similarity=0.284 Sum_probs=98.5 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) .||+-+-.|-|..-+ |..+|+.|+.| .-|++-.....--+.++-+. ++..+ .....++..++++ ---+| T Consensus 59 RPIGYGAFGVVWsVT--DPRdgrrvalk-K~pnvfq~L~s~krvFre~k-mLcfF-kHdNVLSaLDILQ------Pph~d 127 (449) T KOG0664 59 RPIGYGAFGVVWSVT--DPRSGKRVALK-KMPNVFQNLASCKRVFREIK-MLSSF-RHDNVLSLLDILQ------PANPS 127 (449) T ss_pred CCCCCCCEEEEEECC--CCCCCCEEEHH-HCCHHHHHHHHHHHHHHHHH-HHHHH-CCCCHHHHHHHCC------CCCCC T ss_conf 855545415898613--77665441075-42267787888888875557-76653-1221777876428------99810 Q ss_pred HHHHHHHHH-HHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH---- Q ss_conf 599998898-720244677664300001022178335300247863242677332002256899999999999897---- Q gi|254780623|r 205 LRLEAAAFS-EMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL---- 279 (517) Q Consensus 205 ~~~Ea~n~~-~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~---- 279 (517) |-.|.--.. .+...+ .+-|+-| ..+...-++.|+.||+ T Consensus 128 fFqEiYV~TELmQSDL--HKIIVSP-----------------------------------Q~Ls~DHvKVFlYQILRGLK 170 (449) T KOG0664 128 FFQELYVLTELMQSDL--HKIIVSP-----------------------------------QALTPDHVKVFVYQILRGLK 170 (449) T ss_pred HHHHHHHHHHHHHHHH--HHEECCC-----------------------------------CCCCCCHHHHHHHHHHHHHH T ss_conf 8999999999987535--5526168-----------------------------------77880155777999986667 Q ss_pred ---HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCH Q ss_conf ---448661787862289802895357434031216989999999766999718727899999984126677893 Q gi|254780623|r 280 ---RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNR 351 (517) Q Consensus 280 ---~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~ 351 (517) --|..|-|-.|||++|..+--+-+-|||....-+.+.+.++..=+. -.|.+.-+.+...-..+..+|. T Consensus 171 YLHsA~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d~~~hMTqEVV----TQYYRAPEiLMGaRhYs~AvDi 241 (449) T KOG0664 171 YLHTANILHRDIKPGNLLVNSNCILKICDFGLARTWDQRDRLNMTHEVV----TQYYRAPELLMGARRYTGAVDI 241 (449) T ss_pred HHHHCCHHHCCCCCCCEEECCCCEEEECCCCCCCCCCHHHHHHHHHHHH----HHHHCCHHHHHCCHHCCCCCCE T ss_conf 8754123323678763776167358852554321047356655379999----9873166876222000575200 No 425 >cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central Probab=93.39 E-value=0.06 Score=34.26 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=23.6 Q ss_pred EECCCCCCCEEEEE-CCCCEEEEECCHH Q ss_conf 66178786228980-2895357434031 Q gi|254780623|r 283 FFHADLHPGNLFVD-SKGYIVAVDMGIT 309 (517) Q Consensus 283 fFHaDPHpGNi~v~-~dg~i~~lDfG~v 309 (517) +-=+|=||+||+++ .+|+++-+|||.+ T Consensus 141 lglGDRH~~NIli~~~tG~vvHIDFg~~ 168 (237) T cd00892 141 LGLGDRHGENILFDSNTGDVVHVDFNCL 168 (237) T ss_pred HCCCCCCCCCEEEECCCCCEEEEECHHH T ss_conf 0347888765899858888898712133 No 426 >KOG0902 consensus Probab=93.38 E-value=0.05 Score=34.90 Aligned_cols=128 Identities=13% Similarity=0.093 Sum_probs=70.3 Q ss_pred CCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC Q ss_conf 78786228980289535743403121698999999976699971872789999998412667789368999999852100 Q gi|254780623|r 286 ADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRAIGEPI 365 (517) Q Consensus 286 aDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i~~~~~~~ 365 (517) -|-|-||||++++|+++-||||.+=+.+|.---++ +.+.+.--+...-||-..+ -..|.......+..| T Consensus 1657 KDRHNGNim~Dd~G~~iHIDFGf~~e~sPGgnl~f--------E~~fKLt~Em~~~mgG~~~---~~~f~~f~elcVk~y 1725 (1803) T KOG0902 1657 KDRHNGNIMIDDQGHIIHIDFGFMFESSPGGNLGF--------EPPFKLTKEMVMLMGGKME---AKPFKWFQELCVKGY 1725 (1803) T ss_pred CCCCCCCEEECCCCCEEEEEEEEEEEECCCCCCCC--------CCCCCCHHHHHHHHCCCCC---CCCHHHHHHHHHHHH T ss_conf 22468835672678789986226885069986665--------7873226999999589877---862899999999999 Q ss_pred CCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 133433311356899999754527971288899999999998849987688988899999999999986459 Q gi|254780623|r 366 HGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVARMLNPEFNMWVSSEPIVEEWIRDHLG 437 (517) Q Consensus 366 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~~~ll~r~l~~lEG~~~~LdP~~d~~~~~~p~~~~~l~~~~~ 437 (517) ...-.- .+-+-.+.+.+-.-|+.. +|.= +++..-.+..|+.+=-+ |.-|....+.+.+. T Consensus 1726 LA~R~~----~~~iv~~V~~mldsgLPC-------frg~-~i~nl~~RF~pemsere-Aa~fm~~vi~~~~~ 1784 (1803) T KOG0902 1726 LAARPY----MDAIVSLVQSMLDSGLPC-------FRGQ-TIGNLRARFAPEMSERE-AALFMLSVITDSYL 1784 (1803) T ss_pred HHHCHH----HHHHHHHHHHHHHCCCCC-------CCCC-HHHHHHHHHCCCCCHHH-HHHHHHHHHHHHHH T ss_conf 860467----888999999997159985-------0867-28889986096536688-99999999999998 No 427 >cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno Probab=93.13 E-value=0.077 Score=33.42 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=23.8 Q ss_pred EECCCCCCCEEEEE-CCCCEEEEECCHH Q ss_conf 66178786228980-2895357434031 Q gi|254780623|r 283 FFHADLHPGNLFVD-SKGYIVAVDMGIT 309 (517) Q Consensus 283 fFHaDPHpGNi~v~-~dg~i~~lDfG~v 309 (517) +-=||=||.||+++ .+|+++-+|||.+ T Consensus 211 lGLGDRH~~NILi~~~tG~vvHIDfg~~ 238 (307) T cd05170 211 IGLGDRHLDNVLIDLKTGEVVHIDYNVC 238 (307) T ss_pred HCCCCCCCCEEEEECCCCCEEEEECHHH T ss_conf 2367898640899868788899951233 No 428 >pfam00454 PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase. Some members of this family probably do not have lipid kinase activity and are protein kinases. Probab=93.10 E-value=0.064 Score=34.02 Aligned_cols=27 Identities=30% Similarity=0.593 Sum_probs=24.0 Q ss_pred EECCCCCCCEEEEE-CCCCEEEEECCHH Q ss_conf 66178786228980-2895357434031 Q gi|254780623|r 283 FFHADLHPGNLFVD-SKGYIVAVDMGIT 309 (517) Q Consensus 283 fFHaDPHpGNi~v~-~dg~i~~lDfG~v 309 (517) +--+|=|+|||+++ .+|+++=||||.+ T Consensus 134 lglgDRH~~NILi~~~~G~~vHIDfg~~ 161 (233) T pfam00454 134 LGNGDRHLDNILVDKTTGKLFHIDFGLC 161 (233) T ss_pred HCCCCCCCCCEEEECCCCCEEEECHHHH T ss_conf 1278888760789768994887623755 No 429 >smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain. subfamily of choline kinases Probab=93.02 E-value=0.084 Score=33.12 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=27.4 Q ss_pred EECCCCCCCEEEEECC--C---CEEEEECCHHEECCHHH Q ss_conf 6617878622898028--9---53574340312169899 Q gi|254780623|r 283 FFHADLHPGNLFVDSK--G---YIVAVDMGITGRLSKRE 316 (517) Q Consensus 283 fFHaDPHpGNi~v~~d--g---~i~~lDfG~vg~l~~~~ 316 (517) +-|||++.+|+|+..+ | .++++||-+++.-++.. T Consensus 122 l~HGD~w~nN~lf~~d~~g~~~~~~liDfQ~~~~g~p~~ 160 (196) T smart00587 122 LNHGDLWANNIMFKYDDEGKPEDVALIDFQLSHYGSPAE 160 (196) T ss_pred EECCCCCHHCEEEEECCCCCCCEEEEEECCCCCCCCCHH T ss_conf 771543431153510799983303664220304588299 No 430 >PRK09902 hypothetical protein; Provisional Probab=92.98 E-value=0.8 Score=25.56 Aligned_cols=117 Identities=17% Similarity=0.159 Sum_probs=71.9 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--------CEEEEECCCCCCCCHHHHHHHHC----CC---HHHH Q ss_conf 865599998898720244677664300001022178--------33530024786324267733200----22---5689 Q gi|254780623|r 202 EMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--------DVITMEWIDGVKISDTEKLRACG----HD---LERL 266 (517) Q Consensus 202 ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--------~VLvmE~i~G~~i~d~~~l~~~~----~d---~~~l 266 (517) |--|.+|-.|+.++++ -.|.+|+++ |++. -+||++-++|.- +++..-+.+ .. +..+ T Consensus 63 ~PTf~RE~~~i~~l~~-----lgI~v~~~v--f~~~rk~~g~~rAiLVT~aL~Gf~--~Ld~w~a~~~~~~~~~~~~~~~ 133 (216) T PRK09902 63 RPTIVREVAVIKELER-----AGVIVPKIV--FGEAVKIEGEWRALLVTEDMAGFI--SIADWYAQHAVSPYSDEVRQAM 133 (216) T ss_pred CCHHHHHHHHHHHHHH-----CCCCCCHHH--HHHHHCCCCCEEEEEEECCCCCCC--CHHHHHHCCCCCCCCHHHHHHH T ss_conf 8409999999999997-----599821436--655103578468999864456763--0899973334121479999999 Q ss_pred HHHHHHHHHHHHHHCCEECCCCCCCEEEEECC--CCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHH Q ss_conf 99999999998974486617878622898028--953574340312169899999997669997187278999 Q gi|254780623|r 267 SVTLVQSFLLHTLRDGFFHADLHPGNLFVDSK--GYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVAD 337 (517) Q Consensus 267 a~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~d--g~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~ 337 (517) ...+. .-+.++-..|.-|+=+=|--|||..+ +.+++||+- ..|..+. ....+.+|...+-+ T Consensus 134 L~~~a-~~l~rlH~~~~qHgclYpKHIFvr~~g~~e~aLIDLE-------K~R~rL~--~~~Aa~~Dl~QL~r 196 (216) T PRK09902 134 LKAVA-LAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLE-------KSRRRLR--RDKAINHDFRQLEK 196 (216) T ss_pred HHHHH-HHHHHHHHCCCCCCCCCCCEEEEECCCCCCEEEEEHH-------HHCHHHH--HHHHHHHHHHHHHH T ss_conf 99999-9999998678334677521699960687316886765-------4021343--77898866999997 No 431 >cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st Probab=92.91 E-value=0.076 Score=33.49 Aligned_cols=26 Identities=35% Similarity=0.509 Sum_probs=22.9 Q ss_pred ECCCCCCCEEEEE-CCCCEEEEECCHH Q ss_conf 6178786228980-2895357434031 Q gi|254780623|r 284 FHADLHPGNLFVD-SKGYIVAVDMGIT 309 (517) Q Consensus 284 FHaDPHpGNi~v~-~dg~i~~lDfG~v 309 (517) -=+|=||+||+++ .+|+++-+|||.+ T Consensus 139 glgDRH~~NIli~~~tG~vvHIDF~~~ 165 (235) T cd05172 139 GIGDRHLSNFLVDLETGGLVGIDFGHA 165 (235) T ss_pred CCCCCCCCCEEEECCCCCEEEECHHHH T ss_conf 236888764899869877887600121 No 432 >cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi Probab=92.84 E-value=0.075 Score=33.53 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=22.7 Q ss_pred ECCCCCCCEEEEEC-CCCEEEEECCHH Q ss_conf 61787862289802-895357434031 Q gi|254780623|r 284 FHADLHPGNLFVDS-KGYIVAVDMGIT 309 (517) Q Consensus 284 FHaDPHpGNi~v~~-dg~i~~lDfG~v 309 (517) -=||-||+||+++. +|+++-+|||++ T Consensus 184 GLGDRH~~NIli~~~tG~vvhIDF~~~ 210 (279) T cd05171 184 GLGDRHANNILIDEKTAEVVHIDLGIA 210 (279) T ss_pred CCCCCCCCCEEEECCCCCEEEECCHHH T ss_conf 157888652788758751999724776 No 433 >KOG0599 consensus Probab=92.84 E-value=0.095 Score=32.73 Aligned_cols=159 Identities=14% Similarity=0.241 Sum_probs=83.6 Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH Q ss_conf 99999867--6667788886555502128887236876403104688777788999875321146854334691799999 Q gi|254780623|r 117 EELYCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRA 194 (517) Q Consensus 117 ~~~F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e 194 (517) .+.|...+ +-++-+-.+-|-|+.-+. +|.+-++|+.--+. ....+ .. ..+ T Consensus 13 ~~fy~~y~pkeilgrgvss~vrRci~k~--t~~e~a~kii~~~a------------------t~~~~-------e~-~~~ 64 (411) T KOG0599 13 KGFYAKYEPKEILGRGVSSVVRRCIHKE--TGKEFAVKIIDVTA------------------TTESG-------ET-PYE 64 (411) T ss_pred HHHHHHCCHHHHHCCCCHHHHHHHHHCC--CCCCEEEEEEEECC------------------CCCCC-------CC-HHH T ss_conf 6677634837776166216666555236--66512699998415------------------66578-------56-899 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHH--HHCCCHHHHHHH Q ss_conf 9988788865599998898720244677664-3000010221783--3530024786324267733--200225689999 Q gi|254780623|r 195 LEQVTKMEMDLRLEAAAFSEMAENTVKDQGF-RVPKIDWNRTERD--VITMEWIDGVKISDTEKLR--ACGHDLERLSVT 269 (517) Q Consensus 195 ~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v-~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~--~~~~d~~~la~~ 269 (517) +.....+|++-.+- ..+.|.| .+-.+| -|+. -||-|-+.---+-|.-.-+ -.......+++. T Consensus 65 ~~EaT~~Ev~ILRq----------v~GHP~II~l~D~y---es~sF~FlVFdl~prGELFDyLts~VtlSEK~tR~iMrq 131 (411) T KOG0599 65 MREATRQEISILRQ----------VMGHPYIIDLQDVY---ESDAFVFLVFDLMPRGELFDYLTSKVTLSEKETRRIMRQ 131 (411) T ss_pred HHHHHHHHHHHHHH----------HCCCCCEEEEEEEC---CCCCHHHHHHHHCCCCHHHHHHHHHEEECHHHHHHHHHH T ss_conf 99999999999998----------62998378755402---476311334243345128877543144117889999999 Q ss_pred HHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHH Q ss_conf 999999989744866178786228980289535743403121698999 Q gi|254780623|r 270 LVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRER 317 (517) Q Consensus 270 l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r 317 (517) +++..-. +--.+..|-|..|-||+.+++-+|.+-|||...+|.+..+ T Consensus 132 lfegVey-lHa~~IVHRDLKpENILlddn~~i~isDFGFa~~l~~Gek 178 (411) T KOG0599 132 LFEGVEY-LHARNIVHRDLKPENILLDDNMNIKISDFGFACQLEPGEK 178 (411) T ss_pred HHHHHHH-HHHHHHHHCCCCHHHEEECCCCCEEEECCCEEECCCCCHH T ss_conf 9999999-9874344223686456431566358732540212687416 No 434 >cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with Probab=92.66 E-value=0.093 Score=32.79 Aligned_cols=27 Identities=30% Similarity=0.587 Sum_probs=23.3 Q ss_pred EECCCCCCCEEEEE-CCCCEEEEECCHH Q ss_conf 66178786228980-2895357434031 Q gi|254780623|r 283 FFHADLHPGNLFVD-SKGYIVAVDMGIT 309 (517) Q Consensus 283 fFHaDPHpGNi~v~-~dg~i~~lDfG~v 309 (517) +-=||=||+||+++ .+|+++-+|||.+ T Consensus 183 lGlGDRH~~NILi~~~tG~vvHIDFg~~ 210 (280) T cd05169 183 LGLGDRHPSNIMIDRLTGKVIHIDFGDC 210 (280) T ss_pred EECCCCCCCCEEEECCCCCEEEEECHHH T ss_conf 1316898643799868787899841665 No 435 >pfam07914 DUF1679 Protein of unknown function (DUF1679). The region featured in this family is found in a number of C. elegans proteins, in one case as a repeat. In many of the family members, this region is associated with the CHK region described by SMART as being found in ZnF_C4 and HLH domain-containing kinases. In fact, one member of this family is annotated as being a member of the nuclear hormone receptor family, and contains regions typical of such proteins (Interpro:IPR000536, Interpro:IPR008946, and Interpro:IPR001628). Probab=92.57 E-value=0.89 Score=25.17 Aligned_cols=210 Identities=13% Similarity=0.163 Sum_probs=99.0 Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHH--HHHHHH-----HH--HHHHHHHE-ECCCCCCEEEEEEECCHHHHHHHHHHH Q ss_conf 899899999875404788999999867--666778-----88--86555502-128887236876403104688777788 Q gi|254780623|r 98 FFPTNTARLSVASALKAPIEELYCEFD--DPIAAA-----SI--AQVHPAVV-HDINGYRKVAVKIIRPGVRKRFFRDIQ 167 (517) Q Consensus 98 p~~~~~v~~~ie~elg~~~~~~F~~fd--ePlasA-----Si--aQVh~A~l-~d~~~g~~VaVKV~rP~i~~~i~~Dl~ 167 (517) .+-|++|+..+++.+|.... |-.-. ++|+-+ -| .|.|.-.- .+.+=..++|+||--+ +. T Consensus 12 HVtweDVe~~iq~~~~T~ak--~G~n~k~~nI~D~~GFmSrI~lVe~dW~~~~~~~~LP~kf~lKIsS~---------l~ 80 (413) T pfam07914 12 HVTWEDVEKAIQEQLGTEAK--FGENKKATNIGDGKGFMSRIALVEPDWTNVEPSKNLPKKFALKISSQ---------LA 80 (413) T ss_pred EEEHHHHHHHHHHHHCCCCC--CCCCCEEEECCCCCCHHHEEEEEECCCCCCCCCCCCCCCEEEEECCH---------HH T ss_conf 04599999999998488762--16884366653673544503686048603787766874179985035---------77 Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCH------HCCCCEEE Q ss_conf 999875321146854334691799999998878886559999889872024467766430000102------21783353 Q gi|254780623|r 168 VMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWN------RTERDVIT 241 (517) Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~------~st~~VLv 241 (517) +..++.... . .....+.-......|...++.== .+|..--+-+.+ +. .+.+-.|+||-- --++-+++ T Consensus 81 -~~~l~~~~~-~-~~~~~~~~e~~~~~f~~~~~~~H--NrEVn~Ykil~k-~n-~~~i~~pKVY~~kkfd~en~~KG~Ii 153 (413) T pfam07914 81 -LVALSKKMK-F-EGGNGFTEEKELKHFESSTRELH--NREVNFYKILEK-FN-HPDIPYTKVYFLKKFDDENDLKGYII 153 (413) T ss_pred -HHHHHHHHH-C-CCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-CC-CCCCCCCCEEEECCCCCCCCCCCEEE T ss_conf -999999974-1-37788876899999999878765--479999999997-06-87898740123024565677777788 Q ss_pred EECCCCCCCCHH----------------HHHHHHCCC-----HHHH-----HHHH---------HHHHHHHH-------- Q ss_conf 002478632426----------------773320022-----5689-----9999---------99999989-------- Q gi|254780623|r 242 MEWIDGVKISDT----------------EKLRACGHD-----LERL-----SVTL---------VQSFLLHT-------- 278 (517) Q Consensus 242 mE~i~G~~i~d~----------------~~l~~~~~d-----~~~l-----a~~l---------~~~~~~qi-------- 278 (517) |||++++..-+. +.+.+.+.. .+.+ .+.. ++.++.|+ T Consensus 154 mE~v~ni~~~~~y~ni~~deL~~vv~~iA~fqA~~~~LseEE~k~i~g~df~~~~~~~~~~~~~~~~~f~~lr~~~g~~~ 233 (413) T pfam07914 154 MEYVPNIHTRHMYENIPADELIPVLRAIATFQALGESLSEEEKKSANGADFLEQMFETFMSEEGLKGIFDQLRNIFGAEY 233 (413) T ss_pred EEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH T ss_conf 88248846872548989899999999999999864349989975356757999999987236779999999975411123 Q ss_pred ----------HHC----------------------CEECCCCCCCEEEEECC--CCE---EEEECCHHEECCHHHHHHHH Q ss_conf ----------744----------------------86617878622898028--953---57434031216989999999 Q gi|254780623|r 279 ----------LRD----------------------GFFHADLHPGNLFVDSK--GYI---VAVDMGITGRLSKRERRFLA 321 (517) Q Consensus 279 ----------~~~----------------------GfFHaDPHpGNi~v~~d--g~i---~~lDfG~vg~l~~~~r~~l~ 321 (517) +.+ =+-|+|+-+.||+...+ |++ .+|||-++...+|.. -+. T Consensus 234 ~ekv~e~~~~~~~y~~~~~~~~k~~ni~~~lG~k~Vl~HgDlw~~NiL~~~~~~g~~~~~aiID~Q~~~~g~p~~--Dl~ 311 (413) T pfam07914 234 PEKVEELVDIFEHYGPEILIFKKYTNLSKVLGIKPVLVHGDLWQSNILWSLDNDGKLKLKAIIDYQTVHMGNPAE--DLV 311 (413) T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHEEECCCCCCCCEEHHEEEHHHHCCCCHHH--HHH T ss_conf 899987789998737234458988747875187544104751576501213778760001111101205688488--899 Q ss_pred HHHHHH Q ss_conf 766999 Q gi|254780623|r 322 EILYGF 327 (517) Q Consensus 322 ~l~~a~ 327 (517) +++... T Consensus 312 rl~~~~ 317 (413) T pfam07914 312 RLLLSC 317 (413) T ss_pred HHHHHC T ss_conf 999835 No 436 >KOG0903 consensus Probab=92.40 E-value=0.078 Score=33.39 Aligned_cols=123 Identities=18% Similarity=0.231 Sum_probs=61.7 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHH- Q ss_conf 5433469179999999887888655999988987202446776-64300001022178--3353002478632426773- Q gi|254780623|r 181 PSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQ-GFRVPKIDWNRTER--DVITMEWIDGVKISDTEKL- 256 (517) Q Consensus 181 ~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~-~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l- 256 (517) +....+++..++---.+.+++| ..-.+-+..|.+.|.... .+++ ++|.=|+|. .=|+..-++..+|-.+..- T Consensus 580 g~~pnWdL~SVIVKtGdDLrQE---~fA~Qli~~f~~IW~EegvplWl-RpykIlvtss~sGLIEtI~da~SIHsIKk~l 655 (847) T KOG0903 580 GHLPNWDLRSVIVKTGDDLRQE---LFAYQLISAFKDIWQEEGVPLWL-RPYKILVTSSDSGLIETIVDAMSIHSIKKRL 655 (847) T ss_pred CCCCCCCEEEEEEECCCHHHHH---HHHHHHHHHHHHHHHHCCCCCEE-EEEEEEEEECCCCCEEECCCHHHHHHHHHHC T ss_conf 6678862577752048167799---99999999999999973996125-4579999706865424322136489998853 Q ss_pred ------H----HHCC-C---H--------HHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf ------3----2002-2---5--------689999999999989744866178786228980289535743403121698 Q gi|254780623|r 257 ------R----ACGH-D---L--------ERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 257 ------~----~~~~-d---~--------~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) + +.|- + . ..+|.--+-+|+-|+ -|=|-|||+++.+|.|+-||||.|-.=+| T Consensus 656 ~~~~~l~~F~~~~g~~NS~~yk~AQrNFvqSlagYSLvcYlLQv-------KDRHNGNILiD~EGHIIHIDFGFmLsnsP 728 (847) T KOG0903 656 PNLASLRHFFAAFGKPNSEKYKSAQRNFVQSLAGYSLVCYLLQV-------KDRHNGNILIDEEGHIIHIDFGFMLSNSP 728 (847) T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCCCCCEEECCCCCEEEEEEEEEECCCC T ss_conf 00244889999857888399999999999998889999886302-------12457735763788779986346724899 No 437 >KOG0665 consensus Probab=92.31 E-value=0.18 Score=30.61 Aligned_cols=130 Identities=19% Similarity=0.280 Sum_probs=78.3 Q ss_pred CCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHH--HHHHHHHHCCEECCCCCCCEEEEECCCC Q ss_conf 66430000102217833530024786324267733200225689999999--9999897448661787862289802895 Q gi|254780623|r 223 QGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQ--SFLLHTLRDGFFHADLHPGNLFVDSKGY 300 (517) Q Consensus 223 ~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~--~~~~qi~~~GfFHaDPHpGNi~v~~dg~ 300 (517) -.+.-|.-..+--.+--+|||++++ .+..+..++ .|-+.+...+.. +-.+-+...|+.|-|.-|-||.+..++. T Consensus 81 ~n~ftP~~~l~~f~e~y~vme~m~~-nl~~vi~~e---lDH~tis~i~yq~~~~ik~lhs~~IihRdLkPsnivv~~~~~ 156 (369) T KOG0665 81 LNVFTPQKTLEEFQEVYLVMELMDA-NLCQVILME---LDHETISYILYQMLCGIKHLHSAGIIHRDLKPSNIVVNSDCT 156 (369) T ss_pred EECCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCEECCHHH T ss_conf 1105764248988777888885122-788888874---130888999998788889988525143356764414146320 Q ss_pred EEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH Q ss_conf 357434031216989999999766999718727899999984126677893689999998521 Q gi|254780623|r 301 IVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRAIGE 363 (517) Q Consensus 301 i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i~~~~~ 363 (517) +-++|||..-+-++.++ ..-.+..-+.++.++.+.+| ..+.+|.-..--.+.+++. T Consensus 157 lKi~dfg~ar~e~~~~~------mTpyVvtRyyrapevilg~~-~ke~vdiwSvGci~gEli~ 212 (369) T KOG0665 157 LKILDFGLARTEDTDFM------MTPYVVTRYYRAPEVILGMG-YKENVDIWSVGCIMGELIL 212 (369) T ss_pred EEECCCHHHCCCCCCCC------CCCHHHEEECCCCHHEECCC-CCCCCHHHHHHHHHHHHHH T ss_conf 56423011021476423------67343302102731010367-7420022544358887750 No 438 >pfam02958 DUF227 Domain of unknown function (DUF227). This family includes a large number of drosophila proteins of unknown function. The family also includes several C. elegans proteins. The alignment contains many histidines and aspartates that are conserved, suggesting a metal binding and possibly a phosphoesterase function (A Bateman pers. obs.). Probab=91.92 E-value=0.49 Score=27.17 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=27.0 Q ss_pred EECCCCCCCEEEEE--CCC---CEEEEECCHHEECCHHH Q ss_conf 66178786228980--289---53574340312169899 Q gi|254780623|r 283 FFHADLHPGNLFVD--SKG---YIVAVDMGITGRLSKRE 316 (517) Q Consensus 283 fFHaDPHpGNi~v~--~dg---~i~~lDfG~vg~l~~~~ 316 (517) +-|||.|.+|+|+. ++| .++++||-+++.-++.. T Consensus 216 l~HGD~w~nN~mf~~d~~g~~~~~~lvDfQ~~~~g~p~~ 254 (293) T pfam02958 216 LNHGDLWVNNIMFKYDEEGEPEDVILVDFQLSRYGSPAL 254 (293) T ss_pred EECCCCCHHHEEEEECCCCCEEEEEEEECCCCCCCCHHH T ss_conf 884654643064642799986318999378578188099 No 439 >COG3281 Ble Uncharacterized protein, probably involved in trehalose biosynthesis [Carbohydrate transport and metabolism] Probab=91.90 E-value=0.22 Score=29.92 Aligned_cols=36 Identities=28% Similarity=0.518 Sum_probs=26.7 Q ss_pred HHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECC Q ss_conf 8999999999998974486617878622898028953574340 Q gi|254780623|r 265 RLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMG 307 (517) Q Consensus 265 ~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG 307 (517) +++.......+.+ .|+|.|-|.+++.+ |+..+|||- T Consensus 274 ~la~~algg~l~R------vHGDLHLgQVLvt~-g~~~liDFE 309 (438) T COG3281 274 KLAREALGGVLQR------VHGDLHLGQVLVTP-GRALLIDFE 309 (438) T ss_pred HHHHHHHHHHHHH------HHCCCEEHHEEEEC-CCEEEEECC T ss_conf 9987654357988------70540004046307-837998447 No 440 >KOG4717 consensus Probab=91.39 E-value=1.2 Score=24.21 Aligned_cols=146 Identities=18% Similarity=0.177 Sum_probs=83.3 Q ss_pred HHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 76667788886555502128887236876403104688777788999875321146854334691799999998878886 Q gi|254780623|r 124 DDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM 203 (517) Q Consensus 124 dePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El 203 (517) |+.++.+-.|-|--|+--- +|++|||||.-..- +|-. -...+ T Consensus 23 ekTlG~GHFAVVKLArHVF--TGekVAVKviDKTK---------------------------lD~~-----st~hl---- 64 (864) T KOG4717 23 EKTLGRGHFAVVKLARHVF--TGEKVAVKVIDKTK---------------------------LDTL-----STGHL---- 64 (864) T ss_pred HHHHCCCCEEEHHHHHHHC--CCCEEEEEEECCCC---------------------------CCHH-----HHHHH---- T ss_conf 6651677211011344641--46636899841333---------------------------1124-----56778---- Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH--- Q ss_conf 55999988987202446776643000010221783353002478632426773320022568999999999998974--- Q gi|254780623|r 204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLR--- 280 (517) Q Consensus 204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~--- 280 (517) -.|.+.|+....- .-|+.=+|++ --|+--|+.|.=+|--+-|.---++.|. .+.+.+-||.||+. T Consensus 65 --fqEVRCMKLVQHp----NiVRLYEViD-TQTKlyLiLELGD~GDl~DyImKHe~Gl-----~E~La~kYF~QI~~AI~ 132 (864) T KOG4717 65 --FQEVRCMKLVQHP----NIVRLYEVID-TQTKLYLILELGDGGDLFDYIMKHEEGL-----NEDLAKKYFAQIVHAIS 132 (864) T ss_pred --HHHHHHHHHHCCC----CEEEEEEECC-CCCEEEEEEEECCCCCHHHHHHHHCCCC-----CHHHHHHHHHHHHHHHH T ss_conf --8998999874277----7455223002-5533899998167730899998610220-----47889999999999998 Q ss_pred ----CCEECCCCCCCEE-EEECCCCEEEEECCHHEECCHHHHHH Q ss_conf ----4866178786228-98028953574340312169899999 Q gi|254780623|r 281 ----DGFFHADLHPGNL-FVDSKGYIVAVDMGITGRLSKRERRF 319 (517) Q Consensus 281 ----~GfFHaDPHpGNi-~v~~dg~i~~lDfG~vg~l~~~~r~~ 319 (517) -.+.|-|..|-|. |+.+-|-+-+-|||.--.+-|..+-. T Consensus 133 YCHqLHVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG~kL~ 176 (864) T KOG4717 133 YCHQLHVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPGKKLT 176 (864) T ss_pred HHHHHHHEECCCCCCEEEEEEECCCEEEECCCCCCCCCCCCHHH T ss_conf 87665400034785305776513805740035455678861120 No 441 >PRK09188 serine/threonine protein kinase; Provisional Probab=91.03 E-value=1.3 Score=23.96 Aligned_cols=99 Identities=22% Similarity=0.315 Sum_probs=70.8 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEE Q ss_conf 59999889872024467766430000102217833530024786324267733200225689999999999989744866 Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFF 284 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfF 284 (517) +.+|++.+++.+.. ..+|...+ ...+-|+-.|++|+++--. ...-|..- -+-.+..++++-.-|+- T Consensus 68 a~rE~~AL~~~~g~------~~~P~Ll~--~d~~~L~R~~~~G~~l~la----~P~gd~a~--frsA~r~Lr~lhRaGv~ 133 (365) T PRK09188 68 AAREIRALKTVRGI------VVVPQLLA--TGKDGLVRGWIEGVPLHLA----RPHGDPKW--FRSAHRALRDLHRAGVT 133 (365) T ss_pred HHHHHHHHHHHCCC------CCCCCEEE--ECCCCEEHHHHCCCCCCCC----CCCCCHHH--HHHHHHHHHHHHHCCCC T ss_conf 99999999972377------88871245--0763001011047521016----99886799--99999999999970666 Q ss_pred CCCC-CCCEEEEECCCCEEEEECCHHEECCHHHH Q ss_conf 1787-86228980289535743403121698999 Q gi|254780623|r 285 HADL-HPGNLFVDSKGYIVAVDMGITGRLSKRER 317 (517) Q Consensus 285 HaDP-HpGNi~v~~dg~i~~lDfG~vg~l~~~~r 317 (517) |-|. .|-|.++.+||+-.++||-.....++.-+ T Consensus 134 HNDLAK~qNWL~~~dG~a~viDFQLA~~~~rR~~ 167 (365) T PRK09188 134 HNDLAKPQNWLMGPDGEAAVIDFQLASVFRRRSA 167 (365) T ss_pred CCCCCCHHCCEECCCCCEEEEEEEECCCCCCHHH T ss_conf 4300120021036889856676330025573228 No 442 >KOG0671 consensus Probab=91.03 E-value=0.62 Score=26.43 Aligned_cols=129 Identities=17% Similarity=0.174 Sum_probs=77.2 Q ss_pred HHHHHHHHHCCC-CCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCH------HHHHHHHHHHHHHHHHH Q ss_conf 998898720244-67766430000102217833530024786324267733200225------68999999999998974 Q gi|254780623|r 208 EAAAFSEMAENT-VKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDL------ERLSVTLVQSFLLHTLR 280 (517) Q Consensus 208 Ea~n~~~~~~~~-~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~------~~la~~l~~~~~~qi~~ 280 (517) |.+-++++.+.= .+.-.+..=.=|-||-+.-++|-|-+ |.++-| -+++.++-+ ..+|..+.++.-. +-. T Consensus 135 Ei~vLqki~~~DP~g~~rcv~m~~wFdyrghiCivfell-G~S~~d--Flk~N~y~~fpi~~ir~m~~QL~~sv~f-Lh~ 210 (415) T KOG0671 135 EIEVLQKINESDPNGKFRCVQMRDWFDYRGHICIVFELL-GLSTFD--FLKENNYIPFPIDHIRHMGYQLLESVAF-LHD 210 (415) T ss_pred HHHHHHHHHCCCCCCCEEEEEEEHHHHCCCCEEEEEECC-CHHHHH--HHCCCCCCCCCHHHHHHHHHHHHHHHHH-HHH T ss_conf 999999987039987547886400352168537998246-765887--7344786566368999999999999999-875 Q ss_pred CCEECCCCCCCEEEEEC--------------------CCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHH Q ss_conf 48661787862289802--------------------8953574340312169899999997669997187278999999 Q gi|254780623|r 281 DGFFHADLHPGNLFVDS--------------------KGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHF 340 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~--------------------dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~ 340 (517) .+..|.|.-|-||++.. ...|.+||||-...-.+.. ..++.-.-.++-+.++ T Consensus 211 ~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e~h--------s~iVsTRHYRAPEViL 282 (415) T KOG0671 211 LKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAIKVIDFGSATFDHEHH--------STIVSTRHYRAPEVIL 282 (415) T ss_pred CCEEECCCCHHHEEEECCCEEEEECCCCCCCEECCCCCCCEEEEECCCCCCCCCCC--------CEEEECCCCCCCHHEE T ss_conf 46035378710078852532787526775210015677645888548752104676--------4244203457732113 Q ss_pred HHHCCCCC Q ss_conf 84126677 Q gi|254780623|r 341 EAGYVPRH 348 (517) Q Consensus 341 ~lg~~~~~ 348 (517) .+|+..+. T Consensus 283 gLGwS~pC 290 (415) T KOG0671 283 GLGWSQPC 290 (415) T ss_pred CCCCCCCC T ss_conf 16767755 No 443 >pfam12260 PIP49_C Pancreatitis induced protein 49 C terminal. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 344 to 431 amino acids in length. This protein has a single completely conserved residue C that may be functionally important. PIP49 is a putative transmembrane protein which is induced to express during pancreatitis. Probab=90.58 E-value=1.4 Score=23.66 Aligned_cols=85 Identities=16% Similarity=0.182 Sum_probs=50.2 Q ss_pred CCHHCCCHHCCCCEEEEECCCCCCCCHH------HHHHHHC-------------CCHHHHHHHHHHHHHHHHHHCCE--- Q ss_conf 3000010221783353002478632426------7733200-------------22568999999999998974486--- Q gi|254780623|r 226 RVPKIDWNRTERDVITMEWIDGVKISDT------EKLRACG-------------HDLERLSVTLVQSFLLHTLRDGF--- 283 (517) Q Consensus 226 ~vP~vy~~~st~~VLvmE~i~G~~i~d~------~~l~~~~-------------~d~~~la~~l~~~~~~qi~~~Gf--- 283 (517) ++|+++- +|+ ..-++||++-.++-.. +.+-..+ -.+.++|-.+++. +..+| +|+ T Consensus 26 h~pkllG-~CG-~~YavE~v~~~~l~g~~lp~~l~~~~p~~~~~~~~q~~~p~W~~rakIalg~Le~-vee~f-~~~~g~ 101 (205) T pfam12260 26 HTPKLLG-FCG-DLYVTERVPHGSLYGISLPWPLEVLIPSGLRRSMDQWFTPSWPRKAKIAIGLLEF-VEDIF-HGTYGS 101 (205) T ss_pred CCHHHHC-CCC-CEEEEEECCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHHH-CCCCCC T ss_conf 4702300-145-6036842046652123476166541763788888876065404789999999999-99980-698775 Q ss_pred -ECCCCCCCEEEEECCCCEEEEECCHHEECCHHH Q ss_conf -617878622898028953574340312169899 Q gi|254780623|r 284 -FHADLHPGNLFVDSKGYIVAVDMGITGRLSKRE 316 (517) Q Consensus 284 -FHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~ 316 (517) ..+|-+|+|+.++.+.++.++|--++ .++.. T Consensus 102 ~~mCDv~~~nfG~~~~~~~k~iD~d~v--~~E~~ 133 (205) T pfam12260 102 FLMCDTSAKNFGYNEKYDLKMVDLRKV--VPEAT 133 (205) T ss_pred EEEECCCCCCCCCCCCCCEEEEEHHHH--CCHHH T ss_conf 677514321015458885699866664--32899 No 444 >PRK10271 thiK thiamine kinase; Provisional Probab=90.47 E-value=1.3 Score=23.94 Aligned_cols=40 Identities=28% Similarity=0.383 Sum_probs=31.6 Q ss_pred HHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHH Q ss_conf 89744866178786228980289535743403121698999 Q gi|254780623|r 277 HTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRER 317 (517) Q Consensus 277 qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r 317 (517) ..+....-|-|.||||+..+++| +.+|||--.+--|+..- T Consensus 73 ~~lkla~~H~D~~~~Nli~~~~g-~~liDWEYAa~~d~~l~ 112 (188) T PRK10271 73 RPLRLAPLHMDVHAGNLVHSASG-LRLIDWEYAGDGDIALE 112 (188) T ss_pred CCCCCCCCCCCCCCCCEEECCCC-CEEEEECCCCCCCHHHH T ss_conf 85232200002565414551787-46875411245676889 No 445 >KOG0690 consensus Probab=89.31 E-value=0.67 Score=26.15 Aligned_cols=70 Identities=24% Similarity=0.421 Sum_probs=42.1 Q ss_pred EEEEECCCCCCCC-HHHHHHHHCCCHHHH-HHHHHH--HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEE Q ss_conf 3530024786324-267733200225689-999999--999989744866178786228980289535743403121 Q gi|254780623|r 239 VITMEWIDGVKIS-DTEKLRACGHDLERL-SVTLVQ--SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517) Q Consensus 239 VLvmE~i~G~~i~-d~~~l~~~~~d~~~l-a~~l~~--~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517) +.||||..|--+- .+..-+-...+|.+. +..++. -|+ --.+..--|..--|+++++||.|-+-|||.|.+ T Consensus 244 CFVMeyanGGeLf~HLsrer~FsE~RtRFYGaEIvsAL~YL---Hs~~ivYRDlKLENLlLDkDGHIKitDFGLCKE 317 (516) T KOG0690 244 CFVMEYANGGELFFHLSRERVFSEDRTRFYGAEIVSALGYL---HSRNIVYRDLKLENLLLDKDGHIKITDFGLCKE 317 (516) T ss_pred EEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHH---HHCCEEEEECHHHHHEECCCCCEEEEECCCCCC T ss_conf 99999724855777601101145313334158999986555---317756530024453016679667500232310 No 446 >cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat Probab=88.95 E-value=0.29 Score=29.02 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=23.2 Q ss_pred EECCCCCCCEEEEE-CCCCEEEEECCHH Q ss_conf 66178786228980-2895357434031 Q gi|254780623|r 283 FFHADLHPGNLFVD-SKGYIVAVDMGIT 309 (517) Q Consensus 283 fFHaDPHpGNi~v~-~dg~i~~lDfG~v 309 (517) +.-||=||.||+++ .+|+++-+|||.+ T Consensus 156 lGlGDRh~~Nili~~~tG~vvhiDf~~~ 183 (253) T cd05163 156 LSINNRNPDKIFISRDTGNVYQSDLLPS 183 (253) T ss_pred HCCCCCCHHHEEEECCCCCEEEEEECHH T ss_conf 4168998566799868777899853322 No 447 >KOG0576 consensus Probab=88.92 E-value=0.44 Score=27.59 Aligned_cols=212 Identities=13% Similarity=0.124 Sum_probs=105.2 Q ss_pred HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 66778888655550212888723687640310468877778899987532114685433469179999999887888655 Q gi|254780623|r 126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL 205 (517) Q Consensus 126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~ 205 (517) -++|++-|-||+|+=+. +|+-+||||..=.--+.+..+ .. =....+.-+-+.++--| T Consensus 22 rvgsgTygdvyKaRd~~--s~elaavkvVkLep~dd~~~i----qq-------ei~~~~dc~h~nivay~---------- 78 (829) T KOG0576 22 RVGSGTYGDVYKARDKR--SGELAAVKVVKLEPGDDFSGI----QQ-------EIGMLRDCRHPNIVAYF---------- 78 (829) T ss_pred EECCCCCCCHHHHCCCC--CCCHHHHEEEECCCCCCCCCC----CC-------CEEEEECCCCCCHHHHH---------- T ss_conf 42378632022220123--576223123422578640000----32-------10355037785728887---------- Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCC-CHHHHH---HHHHHHHHHHHHHC Q ss_conf 99998898720244677664300001022178335300247863242677332002-256899---99999999989744 Q gi|254780623|r 206 RLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGH-DLERLS---VTLVQSFLLHTLRD 281 (517) Q Consensus 206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~-d~~~la---~~l~~~~~~qi~~~ 281 (517) +...+.+ +-.++|||..|-++-|+... .|. .-.++| +.-.. -++-+.-- T Consensus 79 ----------gsylr~d--------------klwicMEycgggslQdiy~~--TgplselqiayvcRetl~-gl~ylhs~ 131 (829) T KOG0576 79 ----------GSYLRRD--------------KLWICMEYCGGGSLQDIYHV--TGPLSELQIAYVCRETLQ-GLKYLHSQ 131 (829) T ss_pred ----------HHHHHHC--------------CCEEEEEECCCCCCCCEEEE--CCCCHHHHHHHHHHHHHC-CCHHHHCC T ss_conf ----------5432314--------------76799996289862200252--132156788888762011-11244417 Q ss_pred CEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHH---------HHHHHH-------CCCHHHHHHHHHHHHCC Q ss_conf 86617878622898028953574340312169899999997---------669997-------18727899999984126 Q gi|254780623|r 282 GFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAE---------ILYGFI-------SRDYQRVADVHFEAGYV 345 (517) Q Consensus 282 GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~---------l~~a~~-------~~D~~~~~~~l~~lg~~ 345 (517) |-.|-|-..|||+.+..|.+-+-|||.-+.+....-..-.- =+.|+- .-|...+....+++|.. T Consensus 132 gk~hRdiKGanilltd~gDvklaDfgvsaqitati~KrksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eL 211 (829) T KOG0576 132 GKIHRDIKGANILLTDEGDVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGEL 211 (829) T ss_pred CCCCCCCCCCCEEECCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHC T ss_conf 75024455662431466753313467402333222121102588442224678887504610104430145415445421 Q ss_pred -CCCCCHHHHHHHHHHHHHHCCCCCHHH-CCHHHHHHHHHHHHH Q ss_conf -677893689999998521001334333-113568999997545 Q gi|254780623|r 346 -PRHHNRFSFAQAIRAIGEPIHGQSSDV-ISMGKLLTMLFEITE 387 (517) Q Consensus 346 -~~~~d~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 387 (517) ++..|...++.-.-.--..|....+++ ....+.+.++.+.+. T Consensus 212 qpplfdlhpmr~l~LmTkS~~qpp~lkDk~kws~~fh~fvK~al 255 (829) T KOG0576 212 QPPLFDLHPMRALFLMTKSGFQPPTLKDKTKWSEFFHNFVKGAL 255 (829) T ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 88432202678888762258989855577632388999988871 No 448 >TIGR02457 TreS_Cterm trehalose synthase-fused probable maltokinase; InterPro: IPR012811 Three pathways exist for the biosynthesis of trehalose, an osmoprotectant that in some species is also a precursor of certain cell wall glycolipids. Trehalose synthase, TreS, can interconvert maltose and trehalose, but while the equilibrium favours trehalose, physiological concentrations of trehalose may be much greater than that of maltose, and TreS may act largely in its degradation. This entry describes a domain found only as a C-terminal fusion to TreS proteins. The most closely related proteins outside this family, Pep2 of Streptomyces coelicolor and Mak1 of Actinoplanes missouriensis, have known maltokinase activity. We suggest this domain acts as a maltokinase and helps drive conversion of trehalose to maltose.. Probab=88.69 E-value=0.77 Score=25.68 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=19.2 Q ss_pred CHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC Q ss_conf 031216989999999766999718727899999984126677 Q gi|254780623|r 307 GITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRH 348 (517) Q Consensus 307 G~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~ 348 (517) |.++.+|+-..+.....+..++-.=++++++.+..++...++ T Consensus 296 G~~~~~PE~~~E~~~~~Y~~fag~~G~RLAelH~aLA~~~~D 337 (568) T TIGR02457 296 GSASKLPELIAEQILAGYLEFAGLLGRRLAELHLALAAATED 337 (568) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 755568534557751228999999999899999985589987 No 449 >KOG0662 consensus Probab=88.27 E-value=0.55 Score=26.78 Aligned_cols=134 Identities=24% Similarity=0.350 Sum_probs=77.8 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) |-|+-+.-|-|.+|+-++ +++-||.|-.|-+-. +.-+| .+.++|+- T Consensus 8 ekigegtygtvfkarn~~--t~eivalkrvrlddd-----------------degvp---------------ssalreic 53 (292) T KOG0662 8 EKIGEGTYGTVFKARNRE--THEIVALKRVRLDDD-----------------DEGVP---------------SSALREIC 53 (292) T ss_pred HHHCCCCCEEEEECCCCC--CCCEEEEEEEECCCC-----------------CCCCC---------------HHHHHHHH T ss_conf 864687632467615677--530688998861677-----------------77895---------------79999999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHH-HHHHCCCHHHHHHHHHHHHHHHHHH- Q ss_conf 5999988987202446776643000010221783--35300247863242677-3320022568999999999998974- Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEK-LRACGHDLERLSVTLVQSFLLHTLR- 280 (517) Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~-l~~~~~d~~~la~~l~~~~~~qi~~- 280 (517) ...|.++ ..-|+ .|+-+-+++ .||.||++- |+.. .+..+ -.+--..+++|+-|++. T Consensus 54 llkelkh----------knivr---l~dvlhsdkkltlvfe~cdq----dlkkyfdsln---g~~d~~~~rsfmlqllrg 113 (292) T KOG0662 54 LLKELKH----------KNIVR---LHDVLHSDKKLTLVFEFCDQ----DLKKYFDSLN---GDLDPEIVRSFMLQLLRG 113 (292) T ss_pred HHHHHHC----------CCEEE---HHHHHCCCCEEEEEHHHHHH----HHHHHHHHCC---CCCCHHHHHHHHHHHHHH T ss_conf 9988610----------45431---44454257625875897668----8999988617---866899999999999853 Q ss_pred ------CCEECCCCCCCEEEEECCCCEEEEECCHHEEC Q ss_conf ------48661787862289802895357434031216 Q gi|254780623|r 281 ------DGFFHADLHPGNLFVDSKGYIVAVDMGITGRL 312 (517) Q Consensus 281 ------~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l 312 (517) +++.|-|..|-|++|..+|.+-+-|||...-+ T Consensus 114 l~fchshnvlhrdlkpqnllin~ngelkladfglaraf 151 (292) T KOG0662 114 LGFCHSHNVLHRDLKPQNLLINRNGELKLADFGLARAF 151 (292) T ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCEEECCCCHHHHC T ss_conf 20332324664037711077536883875000335541 No 450 >KOG1152 consensus Probab=88.26 E-value=0.59 Score=26.54 Aligned_cols=150 Identities=17% Similarity=0.338 Sum_probs=88.8 Q ss_pred HHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 99867--6667788886555502128887236876403104688777788999875321146854334691799999998 Q gi|254780623|r 120 YCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ 197 (517) Q Consensus 120 F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 197 (517) |++|. .|++++--|||..|+-+.+ ..+||||-.. .++|-.|-. +-++-.+ .+--|+ T Consensus 560 ~s~yttlq~lG~GAyGkV~lai~K~n--~~eVViK~I~---KeRIL~DtW-------vrDrkLG--------tVp~EI-- 617 (772) T KOG1152 560 FSDYTTLQPLGEGAYGKVNLAIHKEN--NYEVVIKMIF---KERILVDTW-------VRDRKLG--------TVPSEI-- 617 (772) T ss_pred CCCCEEEEECCCCCCCEEEEEEECCC--CEEEEEEEHH---HHHHHHHHH-------HCCCCCC--------CCCHHH-- T ss_conf 23413530136665305787663366--5389866312---445434342-------0056457--------662567-- Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 87888655999988987202446776643000010221783353002478632426773320022568999999999998 Q gi|254780623|r 198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH 277 (517) Q Consensus 198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q 277 (517) +|+.-++ .+--.|+-++-..|.++...++ +|| +.|.-|+=.+-.+ . ...+.+......|+| T Consensus 618 qIla~l~-~~sH~NIlKlLdfFEddd~yyl-------------~te-~hg~gIDLFd~IE-~---kp~m~E~eAk~IFkQ 678 (772) T KOG1152 618 QILATLN-KHSHENILKLLDFFEDDDYYYL-------------ETE-VHGEGIDLFDFIE-F---KPRMDEPEAKLIFKQ 678 (772) T ss_pred HHHHHHH-HCCCCCHHHHHHEEECCCEEEE-------------EEC-CCCCCCCHHHHHH-C---CCCCCHHHHHHHHHH T ss_conf 7998864-2475116545220105871699-------------744-7778752566534-1---676560788889999 Q ss_pred H-------HHCCEECCCCCCCEEEEECCCCEEEEECCHHE Q ss_conf 9-------74486617878622898028953574340312 Q gi|254780623|r 278 T-------LRDGFFHADLHPGNLFVDSKGYIVAVDMGITG 310 (517) Q Consensus 278 i-------~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg 310 (517) + -..|..|-|-.--|..++..|-.-+||||... T Consensus 679 V~agi~hlh~~~ivhrdikdenvivd~~g~~klidfgsaa 718 (772) T KOG1152 679 VVAGIKHLHDQGIVHRDIKDENVIVDSNGFVKLIDFGSAA 718 (772) T ss_pred HHHCCCCCCCCCCEECCCCCCCEEEECCCEEEEEECCCHH T ss_conf 8733101232572302456554798268738986426355 No 451 >KOG0200 consensus Probab=88.04 E-value=0.61 Score=26.47 Aligned_cols=52 Identities=17% Similarity=0.381 Sum_probs=35.5 Q ss_pred HHHHHHHHHHHHHHHHHHEECCCC-----CCEEEEEEECCHHHH----HHHHHHHHHHHHH Q ss_conf 867666778888655550212888-----723687640310468----8777788999875 Q gi|254780623|r 122 EFDDPIAAASIAQVHPAVVHDING-----YRKVAVKIIRPGVRK----RFFRDIQVMYLIA 173 (517) Q Consensus 122 ~fdePlasASiaQVh~A~l~d~~~-----g~~VaVKV~rP~i~~----~i~~Dl~~l~~~~ 173 (517) .|.++++++-.|||++|.++.... ...||||.......+ .+...+.+|+.+. T Consensus 299 ~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~l~~El~~m~~~g 359 (609) T KOG0200 299 KLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELG 359 (609) T ss_pred CCCEEEEECCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHC T ss_conf 3112664236775887888513466666635999984365434788999999999999853 No 452 >KOG0669 consensus Probab=87.55 E-value=0.5 Score=27.15 Aligned_cols=141 Identities=18% Similarity=0.279 Sum_probs=77.1 Q ss_pred HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 66778888655550212888723687640310468877778899987532114685433469179999999887888655 Q gi|254780623|r 126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL 205 (517) Q Consensus 126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~ 205 (517) -++++..|.|.+|+-++ +|++|++|.. +.+.- .. .+...+ .+|++. T Consensus 24 kigqGtfgeVFkAr~~n--~~kkvalkkv--------------------lmene-Ke--Gfpita---------lreiki 69 (376) T KOG0669 24 KIGQGTFGEVFKARSKN--TGKKVALKKV--------------------LMENE-KE--GFPITA---------LREIKI 69 (376) T ss_pred HCCCCHHHHHHHHHHCC--CCCHHHHHHH--------------------HHHCC-CC--CCCHHH---------HHHHHH T ss_conf 51774077899875257--6623578899--------------------87424-45--884788---------999899 Q ss_pred HH----H-HHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHC-C-----CHHHHHHHHHHHH Q ss_conf 99----9-9889872024467766430000102217833530024786324267733200-2-----2568999999999 Q gi|254780623|r 206 RL----E-AAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACG-H-----DLERLSVTLVQSF 274 (517) Q Consensus 206 ~~----E-a~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~-~-----d~~~la~~l~~~~ 274 (517) .. | ..|+-.+-+.++ .+... +-+.--||+.+++. |++.+-... + .-+++...+.. - T Consensus 70 L~~lkHenv~nliEic~tk~-Tp~~r-------~r~t~ylVf~~ceh----DLaGlLsn~~vr~sls~Ikk~Mk~Lm~-G 136 (376) T KOG0669 70 LQLLKHENVVNLIEICRTKA-TPTNR-------DRATFYLVFDFCEH----DLAGLLSNRKVRFSLSEIKKVMKGLMN-G 136 (376) T ss_pred HHHHCCHHHHHHHHHHHHCC-CCCCC-------CCCEEEEEHHHHHH----HHHHHHCCCCCCCCHHHHHHHHHHHHH-H T ss_conf 98724413787999986216-87656-------65136642676531----477774585200368999999999998-8 Q ss_pred HHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf 998974486617878622898028953574340312169 Q gi|254780623|r 275 LLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 275 ~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) +.-|-...+.|-|..|.|++|+.||.+++-|||...-++ T Consensus 137 L~~iHr~kilHRDmKaaNvLIt~dgilklADFGlar~fs 175 (376) T KOG0669 137 LYYIHRNKILHRDMKAANVLITKDGILKLADFGLARAFS 175 (376) T ss_pred HHHHHHHHHHHHCCCHHHEEECCCCEEEEECCCCCCCCC T ss_conf 899987367650034754787378638860244431000 No 453 >PRK05250 S-adenosylmethionine synthetase; Validated Probab=85.93 E-value=2.6 Score=21.51 Aligned_cols=80 Identities=20% Similarity=0.378 Sum_probs=55.7 Q ss_pred CHHCCCHHCCCCEEEEECCCCCCCC--HH--HHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEE Q ss_conf 0000102217833530024786324--26--7733200225689999999999989744866178786228980289535 Q gi|254780623|r 227 VPKIDWNRTERDVITMEWIDGVKIS--DT--EKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIV 302 (517) Q Consensus 227 vP~vy~~~st~~VLvmE~i~G~~i~--d~--~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~ 302 (517) +|-.-+| ++.=.++||-+|.|+. .+ ..-+..+++.+++-+.+.+...+.++....++.| -+++|.|.|+.+ T Consensus 159 ~~~L~PD--~KsQVTveY~~~~P~ri~tIViS~QH~~~v~~~~l~~~i~e~VI~~vl~~~~l~~~---t~~~INPtG~Fv 233 (386) T PRK05250 159 LPYLRPD--AKSQVTVEYEDGKPVRIDTVVLSTQHDPDISQEDLREDVIEEVIKPVLPAELLDPD---TKFLINPTGRFV 233 (386) T ss_pred CCCCCCC--CCEEEEEEEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCC---CEEEECCCCCEE T ss_conf 8754788--73589999758985158899997526886799999998777789875223116878---679987999835 Q ss_pred E----EECCHHEE Q ss_conf 7----43403121 Q gi|254780623|r 303 A----VDMGITGR 311 (517) Q Consensus 303 ~----lDfG~vg~ 311 (517) . -|.|++|| T Consensus 234 iGGP~~D~GlTGR 246 (386) T PRK05250 234 IGGPQGDAGLTGR 246 (386) T ss_pred ECCCCCCCCCCCC T ss_conf 3786212455664 No 454 >COG2187 Uncharacterized protein conserved in bacteria [Function unknown] Probab=85.88 E-value=0.43 Score=27.64 Aligned_cols=111 Identities=16% Similarity=0.135 Sum_probs=55.1 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCC---CHHCCCHHCCCCEEEEECCCCCCCCH--HHHHHHHCCCHHHHHHHHHHH Q ss_conf 7888655999988987202446776643---00001022178335300247863242--677332002256899999999 Q gi|254780623|r 199 TKMEMDLRLEAAAFSEMAENTVKDQGFR---VPKIDWNRTERDVITMEWIDGVKISD--TEKLRACGHDLERLSVTLVQS 273 (517) Q Consensus 199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~---vP~vy~~~st~~VLvmE~i~G~~i~d--~~~l~~~~~d~~~la~~l~~~ 273 (517) ...|-+...=|+...+|...-..++.+. =+.+.+.-..+|..-.+.--|.+++. ++.++.. .+..-++.... T Consensus 123 ~lt~~~l~~lak~vA~fH~~a~~n~~i~~~G~~~~~~~~~~eN~~q~~~~l~~~~s~~~~d~i~~~---t~~f~e~~~~l 199 (337) T COG2187 123 KLTESLLDALAKVVARFHQRAPRNPCIDSFGEVGAVAYRVRENFAQTRKYLGIVQSKQQIDRIEHM---TEEFLERHGPL 199 (337) T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHHHHHHHHH T ss_conf 998799999999999996048878520026877778757875599874103754688999999999---99999862089 Q ss_pred HHHHHHHCCE---ECCCCCCCEEEEECCCCEEEEECCHHEECCHHHH Q ss_conf 9998974486---6178786228980289535743403121698999 Q gi|254780623|r 274 FLLHTLRDGF---FHADLHPGNLFVDSKGYIVAVDMGITGRLSKRER 317 (517) Q Consensus 274 ~~~qi~~~Gf---FHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r 317 (517) |= -=...|| =|||.|-|||.+ -||++++.|| -+.++..| T Consensus 200 f~-~R~~~g~IRecHGDLhl~ni~l-~dg~~~LFDC---IEFNd~fr 241 (337) T COG2187 200 FD-RRIAEGFIRECHGDLHLRNICL-WDGEPALFDC---IEFNDPFR 241 (337) T ss_pred HH-HHHHCCCCEECCCCHHHCCEEE-ECCCCEEEEE---EECCCCCH T ss_conf 99-8886597121544010055556-5486158877---52178512 No 455 >KOG2052 consensus Probab=85.38 E-value=2.2 Score=22.07 Aligned_cols=143 Identities=19% Similarity=0.281 Sum_probs=88.0 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517) |-++.+--|.|-|+..+ |+.|||||=...=++.-.++ .++.+ ..+ T Consensus 217 e~IGkGRyGEVwrG~wr----Ge~VAVKiF~srdE~SWfrE-----------------------tEIYq---Tvm----- 261 (513) T KOG2052 217 EIIGKGRFGEVWRGRWR----GEDVAVKIFSSRDERSWFRE-----------------------TEIYQ---TVM----- 261 (513) T ss_pred EEECCCCCCCEEECCCC----CCCEEEEEECCCCHHHHHHH-----------------------HHHHH---HHH----- T ss_conf 88627665205303112----77268998414643655537-----------------------88988---877----- Q ss_pred HHHHHHHHHHH-HCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHH---HHHH---HHHHHHHHH Q ss_conf 59999889872-0244677664300001022178335300247863242677332002256---8999---999999998 Q gi|254780623|r 205 LRLEAAAFSEM-AENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLE---RLSV---TLVQSFLLH 277 (517) Q Consensus 205 ~~~Ea~n~~~~-~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~---~l~~~~~~q 277 (517) ++.| |.-.| +...++. .-+|+=.||.+|-+--++.|. |....++.+ ++|. .|+...--+ T Consensus 262 LRHE--NILgFIaaD~~~~----------gs~TQLwLvTdYHe~GSL~Dy--L~r~tv~~~~ml~LalS~AsGLaHLH~e 327 (513) T KOG2052 262 LRHE--NILGFIAADNKDN----------GSWTQLWLVTDYHEHGSLYDY--LNRNTVTTEGMLKLALSIASGLAHLHME 327 (513) T ss_pred HCCC--HHHHHHHCCCCCC----------CCEEEEEEEEEECCCCCHHHH--HHHCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 3240--1454421145579----------815888875300457739888--7535577999999999986638888898 Q ss_pred HHH----CCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHH Q ss_conf 974----486617878622898028953574340312169899 Q gi|254780623|r 278 TLR----DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRE 316 (517) Q Consensus 278 i~~----~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~ 316 (517) |+. -+.=|-|.-.-||+|.++|.=++-|+|..-+-+... T Consensus 328 I~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv~h~~~t 370 (513) T KOG2052 328 IVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSDT 370 (513) T ss_pred HHCCCCCCHHHCCCCCCCCEEECCCCCEEEEECEEEEEECCCC T ss_conf 8467888512104543252797658837986030147723668 No 456 >KOG0580 consensus Probab=85.03 E-value=0.58 Score=26.64 Aligned_cols=151 Identities=16% Similarity=0.280 Sum_probs=86.6 Q ss_pred HHHHH-H-HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 99867-6-667788886555502128887236876403104688777788999875321146854334691799999998 Q gi|254780623|r 120 YCEFD-D-PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ 197 (517) Q Consensus 120 F~~fd-e-PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 197 (517) -.+|| . |++-|-.|+||-|+-+. ++--||+||.--.- +. ..+... T Consensus 21 l~dfeigr~LgkgkFG~vYlarekk--s~~IvalKVlfKsq---------i~----------------------~~~v~~ 67 (281) T KOG0580 21 LDDFEIGRPLGKGKFGNVYLAREKK--SLFIVALKVLFKSQ---------IL----------------------KTQVEH 67 (281) T ss_pred HHHCCCCCCCCCCCCCCEEEEEECC--CCCEEEEEEEEHHH---------HH----------------------HHCCHH T ss_conf 1121136654677566276764226--78479987301888---------88----------------------743065 Q ss_pred HHHHHHHHHHH--HHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCC-CHHH--HHHHHCC-----CHHHHH Q ss_conf 87888655999--988987202446776643000010221783353002478632-4267--7332002-----256899 Q gi|254780623|r 198 VTKMEMDLRLE--AAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKI-SDTE--KLRACGH-----DLERLS 267 (517) Q Consensus 198 ~l~~ElD~~~E--a~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i-~d~~--~l~~~~~-----d~~~la 267 (517) ++.+|+.-.-- --|+-+....|-++.. -.|.+||-.+-.+ .++- ..+..+. -..++| T Consensus 68 qlrREiEIqs~L~hpnilrlY~~fhd~~r-------------iyLilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A 134 (281) T KOG0580 68 QLRREIEIQSHLRHPNILRLYGYFHDSKR-------------IYLILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLA 134 (281) T ss_pred HHHHEEEEECCCCCCCHHHHHHHEECCCE-------------EEEEEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHH T ss_conf 52102575304688327766451103422-------------68898744884189999755256646622558999998 Q ss_pred HHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHH Q ss_conf 999999999897448661787862289802895357434031216989999999 Q gi|254780623|r 268 VTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLA 321 (517) Q Consensus 268 ~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~ 321 (517) ..+..+ ...++.|-|--|-|+++..+|.+-+-|||=--.-+...|..+. T Consensus 135 ~Al~y~-----h~k~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p~~kR~tlc 183 (281) T KOG0580 135 NALLYC-----HLKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSNKRKTLC 183 (281) T ss_pred HHHHHH-----HCCCCCCCCCCHHHHCCCCCCCEECCCCCCEEECCCCCCEEEE T ss_conf 999875-----0387206989778736488897002678614343788740311 No 457 >KOG0590 consensus Probab=84.43 E-value=0.95 Score=24.97 Aligned_cols=64 Identities=23% Similarity=0.366 Sum_probs=44.1 Q ss_pred EECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH-------HCCEECCCCCCCEEEEECCCCEEEEECCHHEEC Q ss_conf 00247863242677332002256899999999999897-------448661787862289802895357434031216 Q gi|254780623|r 242 MEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL-------RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL 312 (517) Q Consensus 242 mE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~-------~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l 312 (517) |||+++ -+-.. +... ..+-..=+++|++|+. ..|+-|-|.-|-|+++...|.+-++|||...-. T Consensus 400 mE~~~~-Dlf~~--~~~~----~~~~~~e~~c~fKqL~~Gv~y~h~~GiahrdlK~enll~~~~g~lki~Dfg~~~vf 470 (601) T KOG0590 400 MEYCPY-DLFSL--VMSN----GKLTPLEADCFFKQLLRGVKYLHSMGLAHRDLKLENLLVTENGILKIIDFGAASVF 470 (601) T ss_pred CCCCCH-HHHHH--HHCC----CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEEECCCEEEEEECCCHHHC T ss_conf 103637-78788--7604----54433033557888888889999728416437765468863770555305761421 No 458 >TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172. Probab=83.91 E-value=0.77 Score=25.67 Aligned_cols=159 Identities=16% Similarity=0.195 Sum_probs=79.3 Q ss_pred CCEEEEEEECC-H--HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH---------------HHHHHHHHHHHHHH Q ss_conf 72368764031-0--468877778899987532114685433469179999---------------99988788865599 Q gi|254780623|r 146 YRKVAVKIIRP-G--VRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVR---------------ALEQVTKMEMDLRL 207 (517) Q Consensus 146 g~~VaVKV~rP-~--i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------e~~~~l~~ElD~~~ 207 (517) +...-.|+..| + =++.|..|..+=+.++.+-= -.|. .+++.+.-+ -|++.+-+|=.=.. T Consensus 23 ~~~~~lKL~~P~~~s~~~~~~~E~~~sr~~~~LGi-pTP~--~~~lV~~g~sGR~G~~YE~I~gKrSfSRiis~~P~~L~ 99 (234) T TIGR02172 23 GKDILLKLYNPGECSDKETIKREFDASRKVFSLGI-PTPK--PIDLVEDGDSGRLGLIYELIKGKRSFSRIISDNPSRLE 99 (234) T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHCCEEECCC-CCCC--CEEEEEECCCCCCCEEEEEEECCEEEEEEECCCCCHHH T ss_conf 86325441768998888999999886210453168-8885--34778766876411178887175444233158832278 Q ss_pred H-----HHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHC Q ss_conf 9-----9889872024467766430000102217833530024786324267733200225689999999999989-744 Q gi|254780623|r 208 E-----AAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT-LRD 281 (517) Q Consensus 208 E-----a~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi-~~~ 281 (517) | |+.+++++.--.+-..+ .|++... .-.++- +++. . .+.++ -++++++.| =.. T Consensus 100 E~~k~fAe~akkLH~~~cdt~~f--------~s~ke~~-~~~i~e---k~fv---p--~~~k~----~~~a~i~~vPd~~ 158 (234) T TIGR02172 100 EIAKIFAEMAKKLHSTKCDTSKF--------QSYKEKI-RKFIEE---KDFV---P--DDYKE----KARAFIEEVPDTK 158 (234) T ss_pred HHHHHHHHHHHHHCCCCCCCCCC--------CCHHHHH-HHHHHH---HCCC---C--HHHHH----HHHHHHHHCCCCC T ss_conf 99999998768746866898766--------4578998-751033---2157---3--36899----9999986268988 Q ss_pred CEECCCCCCCEEEEECCC-CEEEEECCHHEECCHHHHHHHHHHHHHHH Q ss_conf 866178786228980289-53574340312169899999997669997 Q gi|254780623|r 282 GFFHADLHPGNLFVDSKG-YIVAVDMGITGRLSKRERRFLAEILYGFI 328 (517) Q Consensus 282 GfFHaDPHpGNi~v~~dg-~i~~lDfG~vg~l~~~~r~~l~~l~~a~~ 328 (517) +..|+|.=+||+.++.+| +-.+||.|==|.=+|..=-++.=++..+. T Consensus 159 tCLHGD~Q~GN~I~~g~~G~~yWIDlG~FgyG~P~fDlg~~f~~~~~~ 206 (234) T TIGR02172 159 TCLHGDLQIGNLITSGKGGKTYWIDLGDFGYGSPLFDLGLLFMFCNVL 206 (234) T ss_pred CCEECCCCCCCEEEECCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCC T ss_conf 831012354416882898841145657757797668999999985568 No 459 >TIGR00938 thrB_alt homoserine kinase; InterPro: IPR005280 Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase. . Probab=83.69 E-value=3.3 Score=20.80 Aligned_cols=76 Identities=18% Similarity=0.142 Sum_probs=56.1 Q ss_pred HHCCEECCCCCCCEEEEECCC-CEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHH Q ss_conf 744866178786228980289-5357434031216989999999766999718727899999984126677893689999 Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKG-YIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQA 357 (517) Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg-~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~ 357 (517) +=-|+.|||.=|=|++.+.|+ -=++||| ++|+.+.=...++=++-++++-.++ .-.... T Consensus 189 LP~gvIHADlF~DNVL~~g~~k~~g~IDF-----------------YfAC~~~~~YD~Ait~n~Wc~~ad~---~l~~~~ 248 (312) T TIGR00938 189 LPRGVIHADLFPDNVLFDGDKKVAGVIDF-----------------YFACDDAYAYDLAITVNAWCFEADD---KLDAAA 248 (312) T ss_pred CCCCEEEECCCCCCEEECCCCEEEEEEEH-----------------HHHCCCHHHHHHHHHHHHHHHHHCC---CHHHHH T ss_conf 78623642247774565078744556511-----------------3133502578999999689862113---147999 Q ss_pred HHHHHHHCCC-CCHHHCC Q ss_conf 9985210013-3433311 Q gi|254780623|r 358 IRAIGEPIHG-QSSDVIS 374 (517) Q Consensus 358 i~~~~~~~~~-~~~~~~~ 374 (517) .+.+++-|.. .|+++.+ T Consensus 249 ~kAll~GY~~~rpLs~eE 266 (312) T TIGR00938 249 AKALLDGYERVRPLSEEE 266 (312) T ss_pred HHHHHHHHHCCCCCCHHH T ss_conf 999873121147888878 No 460 >KOG0904 consensus Probab=83.42 E-value=0.86 Score=25.30 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=22.2 Q ss_pred CCCCCCEEEEECCCCEEEEECCHH Q ss_conf 787862289802895357434031 Q gi|254780623|r 286 ADLHPGNLFVDSKGYIVAVDMGIT 309 (517) Q Consensus 286 aDPHpGNi~v~~dg~i~~lDfG~v 309 (517) ||=|.-||||.++|++--||||-+ T Consensus 928 gDRHsDNIMvke~GqlFHIDFGHi 951 (1076) T KOG0904 928 GDRHSDNIMVKETGQLFHIDFGHI 951 (1076) T ss_pred CCCCCCCEEEECCCCEEEEEHHHH T ss_conf 554567557822785898870233 No 461 >KOG4279 consensus Probab=83.31 E-value=3.4 Score=20.69 Aligned_cols=71 Identities=21% Similarity=0.311 Sum_probs=52.0 Q ss_pred EEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH-------HCCEECCCCCCCEEEEEC-CCCEEEEECCHHE Q ss_conf 35300247863242677332002256899999999999897-------448661787862289802-8953574340312 Q gi|254780623|r 239 VITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL-------RDGFFHADLHPGNLFVDS-KGYIVAVDMGITG 310 (517) Q Consensus 239 VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~-------~~GfFHaDPHpGNi~v~~-dg~i~~lDfG~vg 310 (517) -+-||-++|-+++++-.-+.... +=-+.-+..|-+||+ +....|-|-..-|.+|.. .|-+-+=|||-.. T Consensus 648 kIFMEqVPGGSLSsLLrskWGPl---KDNEstm~fYtkQILeGLkYLHen~IVHRDIKGDNVLvNTySGvlKISDFGTsK 724 (1226) T KOG4279 648 KIFMEQVPGGSLSSLLRSKWGPL---KDNESTMNFYTKQILEGLKYLHENKIVHRDIKGDNVLVNTYSGVLKISDFGTSK 724 (1226) T ss_pred EEEEECCCCCCHHHHHHHCCCCC---CCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCEEEEECCCEEEECCCCCCH T ss_conf 88730079974899988514787---665567878899999886565424445303567707986034348851365302 Q ss_pred EC Q ss_conf 16 Q gi|254780623|r 311 RL 312 (517) Q Consensus 311 ~l 312 (517) +| T Consensus 725 RL 726 (1226) T KOG4279 725 RL 726 (1226) T ss_pred HH T ss_conf 32 No 462 >COG3178 Predicted phosphotransferase related to Ser/Thr protein kinases [General function prediction only] Probab=83.13 E-value=3.4 Score=20.64 Aligned_cols=71 Identities=21% Similarity=0.331 Sum_probs=46.5 Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECC----CCEEEEECC--HHEECCHHHHH Q ss_conf 478632426773320022568999999999998974486617878622898028----953574340--31216989999 Q gi|254780623|r 245 IDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSK----GYIVAVDMG--ITGRLSKRERR 318 (517) Q Consensus 245 i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~d----g~i~~lDfG--~vg~l~~~~r~ 318 (517) .-|.++++-+.. .-+++-..++..-..| ...+.|=|=||-|||.+.+ +++++|||- |+|...=+.-. T Consensus 171 ~~g~~l~~~~r~-----~~~aiwd~Lid~~~~~--~~vlvhRDfh~~NLmw~~~~~g~~rvGvlDFQDA~iGP~aYDvas 243 (351) T COG3178 171 HLGRPLTDAERQ-----AWEAIWDGLIDSLLAQ--PKVLVHRDFHSRNLMWTADRAGADRVGVLDFQDALIGPIAYDVAS 243 (351) T ss_pred HHCCCCCHHHHH-----HHHHHHHHHHHHHHCC--CCEEEECCCCCCCCEECCCCCCCCCCCEEEHHHHHCCCCHHHHHH T ss_conf 718988879999-----9999999998887428--705644134675423347766788876553244423851133999 Q ss_pred HHHH Q ss_conf 9997 Q gi|254780623|r 319 FLAE 322 (517) Q Consensus 319 ~l~~ 322 (517) .+.+ T Consensus 244 L~~D 247 (351) T COG3178 244 LLRD 247 (351) T ss_pred HHHH T ss_conf 9762 No 463 >KOG1025 consensus Probab=81.63 E-value=3.1 Score=20.99 Aligned_cols=203 Identities=16% Similarity=0.139 Sum_probs=120.2 Q ss_pred HHHHHHHHHHHHHHHHEECCCCCC----EEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 766677888865555021288872----3687640310468877778899987532114685433469179999999887 Q gi|254780623|r 124 DDPIAAASIAQVHPAVVHDINGYR----KVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT 199 (517) Q Consensus 124 dePlasASiaQVh~A~l~d~~~g~----~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 199 (517) +.-|+|+-.|-||++..-.. |+ +||+||.+-.--. +.-.. T Consensus 701 ~kvLGsgAfGtV~kGiw~Pe--ge~vKipVaiKvl~~~t~~--~~s~e-------------------------------- 744 (1177) T KOG1025 701 DKVLGSGAFGTVYKGIWIPE--GENVKIPVAIKVLIEFTSP--KASIE-------------------------------- 744 (1177) T ss_pred HCEECCCCCEEEEEEEEECC--CCEECCEEEEEEEECCCCC--HHHHH-------------------------------- T ss_conf 21213565315773058358--8623340588874116772--03699-------------------------------- Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH- Q ss_conf 8886559999889872024467766430000102217833530024786324267733200225689999999999989- Q gi|254780623|r 200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHT- 278 (517) Q Consensus 200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi- 278 (517) +..||-+|..+..- .-++.=.|- .++.=.||.+|+++-.+-|....+.. .+..+..-.|..|| T Consensus 745 -----~LdeAl~masldHp----nl~RLLgvc--~~s~~qlvtq~mP~G~LlDyvr~hr~-----~igsq~lLnw~~QIA 808 (1177) T KOG1025 745 -----LLDEALRMASLDHP----NLLRLLGVC--MLSTLQLVTQLMPLGCLLDYVREHRD-----NIGSQDLLNWCYQIA 808 (1177) T ss_pred -----HHHHHHHHHCCCCC----HHHHHHHHC--CCCHHHHHHHHCCCCHHHHHHHHHHC-----CCCHHHHHHHHHHHH T ss_conf -----99999987427880----077776444--56438899886466349999997203-----536799999999999 Q ss_pred ------HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHH Q ss_conf ------74486617878622898028953574340312169899999997669997187278999999841266778936 Q gi|254780623|r 279 ------LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRF 352 (517) Q Consensus 279 ------~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~ 352 (517) =+.+..|.|.-.-|.+|.....+-.-|||...-+.++..+..+. ...--...++=..+.....++..|.= T Consensus 809 kgM~YLe~qrlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~~ey~~~----~gK~pikwmale~i~~~~~thqSDVW 884 (1177) T KOG1025 809 KGMKYLEEQRLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDEKEYSAP----GGKVPIKWMALESIRIRKYTHQSDVW 884 (1177) T ss_pred HHHHHHHHCCHHHHHHHHHHEEECCCCEEEEEECCHHHCCCCCCCCCCCC----CCCCCCHHHHHHHHHCCCCCCHHHHH T ss_conf 98878876541212023431441488757887504011267654211266----66547189988876526877510124 Q ss_pred HHHHHHHHHH----HHCCCCCHHHCCHHHHHHHHHHHHHH Q ss_conf 8999999852----10013343331135689999975452 Q gi|254780623|r 353 SFAQAIRAIG----EPIHGQSSDVISMGKLLTMLFEITEL 388 (517) Q Consensus 353 ~~~~~i~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~ 388 (517) .|--.+=+++ .+|.+.+.+++ -++++...+ T Consensus 885 sfGVtiWElmTFGa~Py~gi~~~eI------~dlle~geR 918 (1177) T KOG1025 885 SFGVTIWELMTFGAKPYDGIPAEEI------PDLLEKGER 918 (1177) T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHH------HHHHHCCCC T ss_conf 4332698887347885689877886------688755234 No 464 >KOG0604 consensus Probab=81.55 E-value=3.5 Score=20.60 Aligned_cols=72 Identities=18% Similarity=0.285 Sum_probs=42.5 Q ss_pred EEEEECCCCCCCCHHHHHHHHCC---CHHH---HHHHHHHHHHHHHHHCCEECCCCCCCEEEEECC---CCEEEEECCHH Q ss_conf 35300247863242677332002---2568---999999999998974486617878622898028---95357434031 Q gi|254780623|r 239 VITMEWIDGVKISDTEKLRACGH---DLER---LSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSK---GYIVAVDMGIT 309 (517) Q Consensus 239 VLvmE~i~G~~i~d~~~l~~~~~---d~~~---la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~d---g~i~~lDfG~v 309 (517) .+|||.++|--+-. .....|. .-++ +.+.+..+. .-+-..+.=|-|.-|-|+++... --+-+-|||.. T Consensus 135 LiVmE~meGGeLfs--riq~~g~~afTErea~eI~~qI~~Av-~~lH~~nIAHRDlKpENLLyt~t~~na~lKLtDfGFA 211 (400) T KOG0604 135 LIVMECMEGGELFS--RIQDRGDQAFTEREASEIMKQIGLAV-RYLHSMNIAHRDLKPENLLYTTTSPNAPLKLTDFGFA 211 (400) T ss_pred EEEEECCCCHHHHH--HHHHCCCCCCHHHHHHHHHHHHHHHH-HHHHHCCHHHCCCCHHHEEEECCCCCCCEEECCCCCC T ss_conf 87422121068899--99870666432878999999999999-9998642132137766634303789862572255520 Q ss_pred EECC Q ss_conf 2169 Q gi|254780623|r 310 GRLS 313 (517) Q Consensus 310 g~l~ 313 (517) .+-. T Consensus 212 K~t~ 215 (400) T KOG0604 212 KETQ 215 (400) T ss_pred CCCC T ss_conf 2567 No 465 >PRK10593 hypothetical protein; Provisional Probab=81.45 E-value=2 Score=22.47 Aligned_cols=128 Identities=16% Similarity=0.215 Sum_probs=66.8 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHCCC-----HHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 999988987202446776643000010-----221783353002478632426773320022568999999999998974 Q gi|254780623|r 206 RLEAAAFSEMAENTVKDQGFRVPKIDW-----NRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLR 280 (517) Q Consensus 206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy~-----~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~ 280 (517) ..||-.+.-.++ ...|.+|.||- +--...||-||++.|+++.......+ .-+.+.+..++..+. T Consensus 55 ~qea~klsmLaR----~gtvr~P~VYg~~~~~q~p~~dvlLmErL~Gvsveap~rtp~---rwe~l~eqiveglLa---- 123 (297) T PRK10593 55 QQEAWKLSMLAR----SGTVRMPTVYGVVTHEEHPGPDVLLLERLRGVSVEAPARTPE---RWEQLKDQIVEGLLA---- 123 (297) T ss_pred HHHHHHHHHHHC----CCCEECCEEEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCHH---HHHHHHHHHHHHHHH---- T ss_conf 999999888750----684321345687741247764010446751886557766878---999999999999988---- Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC-CCCHHHHHHH-- Q ss_conf 4866178786228980289535743403121698999999976699971872789999998412667-7893689999-- Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPR-HHNRFSFAQA-- 357 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~-~~d~~~~~~~-- 357 (517) . -|-|-| |+||..+...-. ..-+...+-++-+-..+-.+....- -.|+..+.+. T Consensus 124 w--Hr~DS~-----------------Gcvg~vdstqen----~w~~wyqqrveVLw~tL~~~~~~~ltm~Dr~~L~r~r~ 180 (297) T PRK10593 124 W--HRQDSR-----------------GCVGAVDSTQEN----LWPSWYQQRVEVLWTTLNQFNNTGLTMQDRRILFRTRE 180 (297) T ss_pred H--HHCCCC-----------------CCCCCCCCCCCC----CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH T ss_conf 7--732355-----------------750566312004----56899999999999998721787876157899999898 Q ss_pred -HHHHHHHCCC Q ss_conf -9985210013 Q gi|254780623|r 358 -IRAIGEPIHG 367 (517) Q Consensus 358 -i~~~~~~~~~ 367 (517) +..++..|.+ T Consensus 181 ~l~~lf~~fnd 191 (297) T PRK10593 181 CLPALFEGFND 191 (297) T ss_pred HHHHHHCCCCC T ss_conf 99999636799 No 466 >KOG0033 consensus Probab=79.48 E-value=4.5 Score=19.73 Aligned_cols=95 Identities=19% Similarity=0.296 Sum_probs=61.0 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH---- Q ss_conf 99998898720244677664300001022178--335300247863242677332002256899999999999897---- Q gi|254780623|r 206 RLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL---- 279 (517) Q Consensus 206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~---- 279 (517) .+||+-... ++. | +|-+..+.+|+. +-||-|+++|--+-. .. +.|....+.-+..|.+|++ T Consensus 58 ~rEarIC~~----LkH-p--~IvrL~~sis~~~~~ylvFe~~~G~dl~~--eI----V~R~~ySEa~aSH~~~QiLeAl~ 124 (355) T KOG0033 58 EREARICRK----LQH-P--NIVRLHDSIQEESFHYLVFDLVTGGELFE--DI----VAREFYSEADASHCIQQILEALA 124 (355) T ss_pred HHHHHHHHH----CCC-C--CEEEHHHHHCCCCEEEEEEECCCCHHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 899999985----479-7--26414334231543578876155207999--99----99999889889999999999998 Q ss_pred ---HCCEECCCCCCCEEEEECC---CCEEEEECCHHEECC Q ss_conf ---4486617878622898028---953574340312169 Q gi|254780623|r 280 ---RDGFFHADLHPGNLFVDSK---GYIVAVDMGITGRLS 313 (517) Q Consensus 280 ---~~GfFHaDPHpGNi~v~~d---g~i~~lDfG~vg~l~ 313 (517) ..|..|-|..|-|+++-.. --+-+-|||..-.++ T Consensus 125 yCH~~~ivHRD~kP~nllLASK~~~A~vKL~~FG~Aie~~ 164 (355) T KOG0033 125 YCHSNGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVN 164 (355) T ss_pred HHHHCCEEECCCCCCCEEEEECCCCCCEEECCCEEEEEEC T ss_conf 7643571114577201477424678863313640589837 No 467 >PHA00451 protein kinase Probab=78.41 E-value=1.2 Score=24.15 Aligned_cols=177 Identities=17% Similarity=0.221 Sum_probs=77.2 Q ss_pred CHHHHHHHHHHHCCCCHHHHHHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHH-HHHHHHHHH Q ss_conf 9899999875404788999999867--6667788886555502128887236876403104688777788-999875321 Q gi|254780623|r 100 PTNTARLSVASALKAPIEELYCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQ-VMYLIARIQ 176 (517) Q Consensus 100 ~~~~v~~~ie~elg~~~~~~F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~-~l~~~~~~~ 176 (517) .+.+++..++---.-|+.++ | +|+-.|-.|-.--+...||+ ..- ---|.+ ..|.. .+.-+.+=+ T Consensus 2 nyTdiqarl~~Ik~LPI~eL----dkRQplLVaLaadiVN~ET~DG~---~T~---g~~gLE---~qD~W~tL~~~mrDa 68 (364) T PHA00451 2 NYTDIQARLAAIKNLPICEL----DKRQPMLVALAADIVNAETQDGN---LTD---GNKGLE---YQDWWQTLGALMRDA 68 (364) T ss_pred CHHHHHHHHHHHHCCCHHHH----CCCCHHHHHHHHHHHCCCCCCCC---CCC---CCCCCH---HHHHHHHHHHHHHCC T ss_conf 77889999999972882654----12341799999998535457886---565---543205---657999999998511 Q ss_pred C-CCCCCCCCCCHHHHHHHHHHHHHHH--------HHHHHH--HHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEE Q ss_conf 1-4685433469179999999887888--------655999--98898720244677664300001022178--335300 Q gi|254780623|r 177 E-KLLPSMRRLCFSAVVRALEQVTKME--------MDLRLE--AAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITME 243 (517) Q Consensus 177 ~-~~~~~~~~~~~~~~~~e~~~~l~~E--------lD~~~E--a~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE 243 (517) . ...+.+ .|+..-..| .-|..| .+....|.+...+ ..-||.||.---.. -..|.+ T Consensus 69 GF~~LGNG----------HFSAAysH~lLPgrVIKVGFKKEDSGAAYtAFCRMhQG--R~GIPnVY~v~RHaGCYTVVLD 136 (364) T PHA00451 69 GFNLLGNG----------HFSAAYSHELLPGRVIKVGFKKEDSGAAYTAFCRMHQG--RAGIPNVYDVQRHAGCYTVVLD 136 (364) T ss_pred CHHEECCC----------CCHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCC--CCCCCCHHHHHHHCCCEEEEHH T ss_conf 43000575----------30655303558985567112345654289999987069--8899707887650683577262 Q ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHH------------------HHHHHHHHH--HHCCEECCCCCCCEEEEECCCCEEE Q ss_conf 24786324267733200225689999------------------999999989--7448661787862289802895357 Q gi|254780623|r 244 WIDGVKISDTEKLRACGHDLERLSVT------------------LVQSFLLHT--LRDGFFHADLHPGNLFVDSKGYIVA 303 (517) Q Consensus 244 ~i~G~~i~d~~~l~~~~~d~~~la~~------------------l~~~~~~qi--~~~GfFHaDPHpGNi~v~~dg~i~~ 303 (517) ++.-+.-..-+... ....+|.. .++. +++| |-.|.=-=|.|.||||.+++|+.++ T Consensus 137 ~L~~C~r~~nd~h~----~ya~~A~~~ie~~~~d~~~~~~~~~~FIET-CkmIRkFF~GIASFDmHSGNiMf~~~g~p~I 211 (364) T PHA00451 137 YLNPCYRDSNDVHH----HYADAAREIIECDCFDAAEEAPISDEFIET-CKMIRKFFYGIASFDMHSGNIMFDKMGVPYI 211 (364) T ss_pred HCCCCCCCCCHHHH----HHHHHHHHHHHCCCCCHHHHCCCCHHHHHH-HHHHHHHHHHHHCCCCCCCCEEECCCCCEEE T ss_conf 03544354424788----999999999845687366526776248999-9999999843310123578434678997455 Q ss_pred EEC Q ss_conf 434 Q gi|254780623|r 304 VDM 306 (517) Q Consensus 304 lDf 306 (517) -|- T Consensus 212 TDP 214 (364) T PHA00451 212 TDP 214 (364) T ss_pred CCC T ss_conf 278 No 468 >PRK02946 aceK bifunctional isocitrate dehydrogenase kinase/phosphatase protein; Validated Probab=77.54 E-value=3.3 Score=20.76 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=13.5 Q ss_pred HHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHE Q ss_conf 98974486617878622898028953574340312 Q gi|254780623|r 276 LHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITG 310 (517) Q Consensus 276 ~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg 310 (517) +|+---+.|-||+-.-|+.|+..||++|+|+--++ T Consensus 452 k~laaaNIFpgDml~kNFGVtrhgrVvfYDYDei~ 486 (580) T PRK02946 452 KQLAAANIFPGDMLLKNFGVTRHGRVVFYDYDEIC 486 (580) T ss_pred HHHHHHCCCCCCCHHHCCCCCCCCEEEEECHHHHE T ss_conf 99997368874201211574566559996105612 No 469 >KOG0606 consensus Probab=76.69 E-value=5.3 Score=19.16 Aligned_cols=201 Identities=17% Similarity=0.196 Sum_probs=98.4 Q ss_pred HCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEEC Q ss_conf 10045988999999988748878998999998754047889999998676667788886555502128887236876403 Q gi|254780623|r 76 TRPDLIGKKLSEDLALLQDKMDFFPTNTARLSVASALKAPIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIR 155 (517) Q Consensus 76 tR~Dllp~~~~~eL~~Lqd~vpp~~~~~v~~~ie~elg~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~r 155 (517) .+++++.-.|--|++ ||+.-+-.|+ ....+|- ..+|.+.-.+..=+.|- +....+...++-+. T Consensus 14 s~~~lits~yf~e~~-l~~~~~~~~~--parllec----epeefy~lle~aeg~~~-----~p~~~~s~~~~~as----- 76 (1205) T KOG0606 14 SQPTLITSQYFYEMS-LQEAHEKSPS--PARLLEC----EPEEFYHLLEAAEGHAR-----KPMTDESPESRGAS----- 76 (1205) T ss_pred CCCCEEECCHHHHHH-HHHHHHCCCC--CHHHCCC----CHHHHHHHHHHHHCCCC-----CCCCCCCCCCCCCC----- T ss_conf 777635420132202-0343113687--2443037----88998888876303455-----88999984446644----- Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCH Q ss_conf 104688777788999875321146854334691--799999998878886559999889872024467766430000102 Q gi|254780623|r 156 PGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCF--SAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWN 233 (517) Q Consensus 156 P~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~--~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~ 233 (517) ...-.+.|+..++.+..=+ + ++.+.. .+.-+-|..-+.++ ..-++|... |++++.|+ T Consensus 77 --~~~p~e~df~~IklisngA--y---gavylvrh~~trqrfa~kiNkq---~lilRnilt----~a~npfvv------- 135 (1205) T KOG0606 77 --RRAPSESDFNTIKLISNGA--Y---GAVYLVRHKETRQRFAMKINKQ---NLILRNILT----FAGNPFVV------- 135 (1205) T ss_pred --CCCCCCCCCCEEEEECCCC--C---CCEEEEECCCCCCCHHHCCCCC---CHHHHCCCC----CCCCCCEE------- T ss_conf --4578746665368621688--7---7525642322133210033401---033422322----26786300------- Q ss_pred HCCCCEEEEECCCCCCCCHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC Q ss_conf 2178335300247863242677-332002256899999999999897448661787862289802895357434031216 Q gi|254780623|r 234 RTERDVITMEWIDGVKISDTEK-LRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL 312 (517) Q Consensus 234 ~st~~VLvmE~i~G~~i~d~~~-l~~~~~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l 312 (517) .|... ++..|--+-.. .+.--|+ -.+|..|.|.-|-|++|+.=|.+-+-|||... T Consensus 136 -----------------gDc~tllk~~g~lPvdm--vla~Eyl---h~ygivhrdlkpdnllIT~mGhiKlTDfgLsk-- 191 (1205) T KOG0606 136 -----------------GDCATLLKNIGPLPVDM--VLAVEYL---HSYGIVHRDLKPDNLLITSMGHIKLTDFGLSK-- 191 (1205) T ss_pred -----------------CHHHHHCCCCCCCCCHH--HHHHHHH---CCCCEECCCCCCCCCEEEECCCCCCCCHHHHH-- T ss_conf -----------------01232114688875125--6776763---15770057888975144430433224024656-- Q ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 9899999997669997187278999999841 Q gi|254780623|r 313 SKRERRFLAEILYGFISRDYQRVADVHFEAG 343 (517) Q Consensus 313 ~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg 343 (517) .++..+-..+..++.+..++-+.+=+ T Consensus 192 -----~GLms~atnl~eg~I~k~t~Ef~dKq 217 (1205) T KOG0606 192 -----KGLMSLATNLKEGHIEKDTHEFQDKQ 217 (1205) T ss_pred -----HHHHHCCCHHHHCCHHHHHHHHHHCC T ss_conf -----54430441232022377777741035 No 470 >KOG0614 consensus Probab=76.62 E-value=5.4 Score=19.14 Aligned_cols=88 Identities=24% Similarity=0.367 Sum_probs=46.1 Q ss_pred HHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCC-C--HH-HHHHHHHHHHHHHHHHCCEECCCC Q ss_conf 8720244677664300001022178335300247863242677332002-2--56-899999999999897448661787 Q gi|254780623|r 213 SEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGH-D--LE-RLSVTLVQSFLLHTLRDGFFHADL 288 (517) Q Consensus 213 ~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~-d--~~-~la~~l~~~~~~qi~~~GfFHaDP 288 (517) -++.+-|+++++|+. -||-+=|--+-.+ +...|. | .. -.+.-.+++| .-+-..|+.--|. T Consensus 483 vrLYrTfrd~kyvYm-------------LmEaClGGElWTi--LrdRg~Fdd~tarF~~acv~EAf-eYLH~k~iIYRDL 546 (732) T KOG0614 483 VRLYRTFRDSKYVYM-------------LMEACLGGELWTI--LRDRGSFDDYTARFYVACVLEAF-EYLHRKGIIYRDL 546 (732) T ss_pred HHHHHHHCCCHHHHH-------------HHHHHCCCHHHHH--HHHCCCCCCCHHHHHHHHHHHHH-HHHHHCCCEECCC T ss_conf 999987434423446-------------5886627516466--44127755520235577899999-9998648044147 Q ss_pred CCCEEEEECCCCEEEEECCHHEECCHHH Q ss_conf 8622898028953574340312169899 Q gi|254780623|r 289 HPGNLFVDSKGYIVAVDMGITGRLSKRE 316 (517) Q Consensus 289 HpGNi~v~~dg~i~~lDfG~vg~l~~~~ 316 (517) .|-|++++.+|-+-+.|||....+.... T Consensus 547 KPENllLd~~Gy~KLVDFGFAKki~~g~ 574 (732) T KOG0614 547 KPENLLLDNRGYLKLVDFGFAKKIGSGR 574 (732) T ss_pred CHHHEEECCCCCEEEEEHHHHHHHCCCC T ss_conf 7566254568856775104677751688 No 471 >PRK00029 hypothetical protein; Validated Probab=76.27 E-value=5.5 Score=19.08 Aligned_cols=130 Identities=14% Similarity=0.118 Sum_probs=65.1 Q ss_pred HHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHH-----------HHHHCCCH Q ss_conf 6899999999999897448661787862289802895357434031216989999999766-----------99971872 Q gi|254780623|r 264 ERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEIL-----------YGFISRDY 332 (517) Q Consensus 264 ~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~-----------~a~~~~D~ 332 (517) +.++++-++.. -+-...||.||=+.--|.-|.-. =||||=++-++...-.....-+ =.++.-|- T Consensus 227 ~~v~~r~A~lv-A~W~~vGFvHGVmNTDNmsI~Ge----TiDYGP~aFmd~ydp~~v~n~~D~~GRYaf~nQP~i~~WNL 301 (487) T PRK00029 227 EEVVERTAELI-AQWQAVGFVHGVMNTDNMSILGE----TFDYGPYGFLDDYDPGFTCNHSDHQGRYAFGNQPAIALWNL 301 (487) T ss_pred HHHHHHHHHHH-HHHHHHCCCCCCCCCCCCEEEEE----ECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH T ss_conf 99999999999-99998622045123688600134----23677601254358666665638987743577759999999 Q ss_pred HHHHHHHHHHHCCCCCCCHHHHH-----------HHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 78999999841266778936899-----------9999852100133433311356899999754527971288899999 Q gi|254780623|r 333 QRVADVHFEAGYVPRHHNRFSFA-----------QAIRAIGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQ 401 (517) Q Consensus 333 ~~~~~~l~~lg~~~~~~d~~~~~-----------~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~~~ll~ 401 (517) .++++++.-+- +.+.++ +.....+..-.|.+-.+-.=.+++.++++++..+++ +|+..+ T Consensus 302 ~~LaeaL~pLi------~~~~~~~~L~~f~~~~~~~~~~~m~~KLGL~~~~~~D~~LI~~LL~lM~~~~~----DyT~~F 371 (487) T PRK00029 302 QRLAQALLPLI------AVEALQAALDRFGDAYQAAYLRRMRAKLGLFTEQEEDEALVNALLALMARSGA----DYTLTF 371 (487) T ss_pred HHHHHHHHHHH------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC----CHHHHH T ss_conf 99999878761------83689999987899999999999999638887782079999999999998099----668999 Q ss_pred HHHHHHH Q ss_conf 9999988 Q gi|254780623|r 402 KTMVVVE 408 (517) Q Consensus 402 r~l~~lE 408 (517) |.|+..+ T Consensus 372 R~Ls~~~ 378 (487) T PRK00029 372 RRLSLLE 378 (487) T ss_pred HHHHCCC T ss_conf 9985577 No 472 >KOG4278 consensus Probab=74.50 E-value=3.9 Score=20.23 Aligned_cols=123 Identities=20% Similarity=0.267 Sum_probs=75.4 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHCCCHHCCC---CEEEEECCCCCCCCHH Q ss_conf 4685433469179999999887888655999988987202-44677664300001022178---3353002478632426 Q gi|254780623|r 178 KLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAE-NTVKDQGFRVPKIDWNRTER---DVITMEWIDGVKISDT 253 (517) Q Consensus 178 ~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~-~~~~~~~v~vP~vy~~~st~---~VLvmE~i~G~~i~d~ 253 (517) -+.+..+++++.-.|..+.....+--.|..||+-|+.++. |+-.- -..||. --++.||+.--.+-|. T Consensus 283 VYeGvWKkyslTvAVKtLKEDtMeveEFLkEAAvMKeikHpNLVqL---------LGVCT~EpPFYIiTEfM~yGNLLdY 353 (1157) T KOG4278 283 VYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQL---------LGVCTHEPPFYIITEFMCYGNLLDY 353 (1157) T ss_pred EEEEEEECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH---------HHHHCCCCCEEEEEEECCCCCHHHH T ss_conf 2232221120453233331000569999999898876048108777---------5011268970798750237419999 Q ss_pred HHHHHHCCCHHHHHHHH-------HHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC Q ss_conf 77332002256899999-------9999998974486617878622898028953574340312169 Q gi|254780623|r 254 EKLRACGHDLERLSVTL-------VQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517) Q Consensus 254 ~~l~~~~~d~~~la~~l-------~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517) |.++ ++..+-... +.+-+.-+=..+|+|-|.-.-|-+|.++.-+-.-|||+..-+. T Consensus 354 --LRec--nr~ev~avvLlyMAtQIsSaMeYLEkknFIHRDLAARNCLVgEnhiVKvADFGLsRlMt 416 (1157) T KOG4278 354 --LREC--NRSEVPAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHIVKVADFGLSRLMT 416 (1157) T ss_pred --HHHH--CHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHC T ss_conf --9872--34426655789999888889999986321555456551211346357752111566513 No 473 >PRK10345 hypothetical protein; Provisional Probab=74.42 E-value=6 Score=18.74 Aligned_cols=93 Identities=12% Similarity=0.089 Sum_probs=57.6 Q ss_pred CCCCCCHHCCCHHCCCC--EEEEECCCC---CCCCHHHH-HHHHCCCHH-HHHHHHHHHHHHHHHHCCEECCCCCCCEEE Q ss_conf 76643000010221783--353002478---63242677-332002256-899999999999897448661787862289 Q gi|254780623|r 222 DQGFRVPKIDWNRTERD--VITMEWIDG---VKISDTEK-LRACGHDLE-RLSVTLVQSFLLHTLRDGFFHADLHPGNLF 294 (517) Q Consensus 222 ~~~v~vP~vy~~~st~~--VLvmE~i~G---~~i~d~~~-l~~~~~d~~-~la~~l~~~~~~qi~~~GfFHaDPHpGNi~ 294 (517) .++-++|+.|-.--|.- =+|.|.|.. ..--.++. +...+.... .-.+..++.|.+-++++...-.|.+|+||. T Consensus 58 ~~w~~lar~yG~VeT~~G~G~v~ElI~d~dG~ia~TLe~yl~~~~~~e~~~~i~~al~~f~~~L~~~~Ilt~dl~p~NIV 137 (210) T PRK10345 58 IDWSMIPRYYGTVETDCGTGYVYDLIADFDGSPSITLTEFAEQCRYEEDAAQLRQLLKKLKRYLLDNRIVTMSLKPQNIL 137 (210) T ss_pred CCCHHCCCEEEEEECCCCEEEEEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCCCCCEEE T ss_conf 98022165101575277327999987779989114399999807987569999999999999999769145367615279 Q ss_pred EEC--C--CCEEEEE-CCHHEECCH Q ss_conf 802--8--9535743-403121698 Q gi|254780623|r 295 VDS--K--GYIVAVD-MGITGRLSK 314 (517) Q Consensus 295 v~~--d--g~i~~lD-fG~vg~l~~ 314 (517) +.. + .+++++| +|...-+|= T Consensus 138 ~~~~~~~~~~lviIDGlG~~~fIPL 162 (210) T PRK10345 138 CQRISESEVIPVVCDNIGESTFIPL 162 (210) T ss_pred EEECCCCCEEEEEEECCCCCCEEEH T ss_conf 9853799768999969997355218 No 474 >TIGR01212 TIGR01212 radical SAM protein, TIGR01212 family; InterPro: IPR005911 This uncharacterised protein family shows significant similarity to IPR005910 from INTERPRO, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.. Probab=74.31 E-value=2.1 Score=22.34 Aligned_cols=168 Identities=16% Similarity=0.186 Sum_probs=75.5 Q ss_pred HHHHHHHHHHH-CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCH--------HHHHHHHHHHCCCCHHHHHHHH Q ss_conf 78999999960-42899999999710045988999999988748878998--------9999987540478899999986 Q gi|254780623|r 53 SDRLARAMNRL-GPSYVKMGQFLATRPDLIGKKLSEDLALLQDKMDFFPT--------NTARLSVASALKAPIEELYCEF 123 (517) Q Consensus 53 ~~rlr~~le~L-GptfiKlGQ~lstR~Dllp~~~~~eL~~Lqd~vpp~~~--------~~v~~~ie~elg~~~~~~F~~f 123 (517) .+.||...|.- ---=| +|==.|||||.+|++..+=|+.+.++-=-+.- +.....|.|.-+ |+.| T Consensus 95 ve~Lk~~y~~aL~~~~v-VGlsvgTRPDC~P~~VLDlL~ey~~~GyevWvELGLQtah~~TL~~INRgHd------~~~y 167 (307) T TIGR01212 95 VEVLKEMYEQALSEDDV-VGLSVGTRPDCVPDEVLDLLAEYKERGYEVWVELGLQTAHDRTLKKINRGHD------FACY 167 (307) T ss_pred HHHHHHHHHHHHHHCCE-EEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHCCCCC------HHHH T ss_conf 68888999987632780-5775368898774789999999954975899960535655899998514378------7899 Q ss_pred HHHHHHHHHHHHHHHHEECCCCCCEEEEEEEC--CHHHHHHHHHHHHHHHHHHHH-C--CCCCCCCCCCHHHHHHHHHHH Q ss_conf 76667788886555502128887236876403--104688777788999875321-1--468543346917999999988 Q gi|254780623|r 124 DDPIAAASIAQVHPAVVHDINGYRKVAVKIIR--PGVRKRFFRDIQVMYLIARIQ-E--KLLPSMRRLCFSAVVRALEQV 198 (517) Q Consensus 124 dePlasASiaQVh~A~l~d~~~g~~VaVKV~r--P~i~~~i~~Dl~~l~~~~~~~-~--~~~~~~~~~~~~~~~~e~~~~ 198 (517) -+ -|-+++-+ |-+|..=|.= || +..+.=+...+.++.+= + +..| +-.+.=+.+.+.+.+- T Consensus 168 ~~--------a~~~~~kr----GikVC~H~I~GLPg--E~~~~~~eTak~~~~l~vdGiKiH~-LhvvkGt~m~k~Y~~G 232 (307) T TIGR01212 168 VD--------AVKRARKR----GIKVCSHVILGLPG--EDREEMLETAKIVASLDVDGIKIHP-LHVVKGTKMAKQYEKG 232 (307) T ss_pred HH--------HHHHHHHC----CCEEEEEEEECCCC--CCHHHHHHHHHHHHHCCCCEEEEEE-EEEEECCHHHHHHHCC T ss_conf 99--------99999765----98899998742898--8888999999999837988488720-1787357578875457 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCC-CCCCCCHHCCCH-HCCCCEEEEECC Q ss_conf 78886559999889872024467-766430000102-217833530024 Q gi|254780623|r 199 TKMEMDLRLEAAAFSEMAENTVK-DQGFRVPKIDWN-RTERDVITMEWI 245 (517) Q Consensus 199 l~~ElD~~~Ea~n~~~~~~~~~~-~~~v~vP~vy~~-~st~~VLvmE~i 245 (517) =.+=| .+=...+...+.+.. .|.|.|=++-.+ ---+..|-=+|. T Consensus 233 ~~~~l---~~e~Y~~~~~d~le~lpP~vv~HRi~~dk~~~~~~i~P~W~ 278 (307) T TIGR01212 233 ELKTL---SLEEYISLACDFLEHLPPEVVVHRISGDKAPRETLIAPEWC 278 (307) T ss_pred CEEEC---CHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEECCCCH T ss_conf 40104---76779999999985089855998412777884515567402 No 475 >pfam04655 APH_6_hur Aminoglycoside/hydroxyurea antibiotic resistance kinase. The aminoglycoside phosphotransferases achieve inactivation of their antibiotic substrates by phosphorylation utilising ATP. Likewise hydroxyurea is inactivated by phosphorylation of the hydroxy group in the hydroxylamine moiety. Probab=74.28 E-value=1.1 Score=24.50 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=24.5 Q ss_pred HHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHH Q ss_conf 766677888865555021288872368764031046 Q gi|254780623|r 124 DDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVR 159 (517) Q Consensus 124 dePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~ 159 (517) +.|...++-+.|..++..| |.++|.|+..|+-+ T Consensus 7 dg~~~~g~~s~V~pV~~~d---G~pAvLKl~~p~~~ 39 (253) T pfam04655 7 DGEVAATHSSLVLPVLRAD---GTPAVLKLAKPREE 39 (253) T ss_pred CCCCCCCCCEEEEEEECCC---CCEEEEEECCCCCC T ss_conf 8877777625899998689---99558883589764 No 476 >pfam06315 AceK Isocitrate dehydrogenase kinase/phosphatase (AceK). This family consists of several bacterial isocitrate dehydrogenase kinase/phosphatase (AceK) proteins (EC:2.7.1.116). Probab=73.32 E-value=4.5 Score=19.71 Aligned_cols=41 Identities=20% Similarity=0.190 Sum_probs=26.1 Q ss_pred HHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH Q ss_conf 99989744866178786228980289535743403121698 Q gi|254780623|r 274 FLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517) Q Consensus 274 ~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517) -.+|+---+.|-||+-.-|+.|+..||++|+|+--++.+++ T Consensus 438 aIk~laaaNIFpgDml~KNFGVtrhgrVvfYDYDei~~ltd 478 (562) T pfam06315 438 AIKQLAAANIFPGDMLLKNFGVTRHGRVVFYDYDEIEYLTD 478 (562) T ss_pred HHHHHHHHCCCCCCCCHHCCCCCCCCEEEEEEHHHHHHHCC T ss_conf 99999983588753101016734565599960267411100 No 477 >KOG1033 consensus Probab=72.02 E-value=1.1 Score=24.34 Aligned_cols=74 Identities=23% Similarity=0.395 Sum_probs=46.8 Q ss_pred EEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH----CCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf 53002478632426773320022568999999999998974----48661787862289802895357434031216989 Q gi|254780623|r 240 ITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLR----DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 240 LvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~----~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) +.|++++--.+.|--.-...+. ... ..+..-+++|+-. -|+.|=|.-|+||+...|+.+-+.|||.+...+.. T Consensus 333 I~Mn~c~~~tledWl~rr~~~e-~~s--~s~~~~~~~q~~~~~~yk~~ihrdlkp~nif~~~d~q~kIgDFgl~ts~~~~ 409 (516) T KOG1033 333 IQMNLCEKETLEDWLRRRRTGE-ERS--LSLMLDIFKQIAPAVEYKGLIHRDLKPSNIFFSDDDQLKIGDFGLVTSQDKD 409 (516) T ss_pred HHHHHHHHHHHHHHHHCCCCCC-CCC--HHHHHHHHHHHCCCHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHEEECCCC T ss_conf 4555543656888861787655-554--0478889986164021033355533532343454204665444401203457 Q ss_pred H Q ss_conf 9 Q gi|254780623|r 316 E 316 (517) Q Consensus 316 ~ 316 (517) - T Consensus 410 ~ 410 (516) T KOG1033 410 E 410 (516) T ss_pred C T ss_conf 7 No 478 >KOG4257 consensus Probab=71.75 E-value=6.9 Score=18.29 Aligned_cols=141 Identities=18% Similarity=0.221 Sum_probs=65.0 Q ss_pred HHHHHHHHHHHHHHHEECCCCCCE--EEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 666778888655550212888723--687640310468877778899987532114685433469179999999887888 Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRK--VAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME 202 (517) Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~--VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E 202 (517) +-|+.|-.|-||.|+..+...|+. ||||+-+-+- .|+ + - T Consensus 395 r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~---------------------t~d-------~-----------t 435 (974) T KOG4257 395 RLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDC---------------------TPD-------D-----------T 435 (974) T ss_pred HHHCCCCCCCEEEEEECCCCCCCCEEEEEEHHCCCC---------------------CHH-------H-----------H T ss_conf 762677455255567506656861465421013679---------------------802-------6-----------8 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH--- Q ss_conf 65599998898720244677664300001022178335300247863242677332002256899999999999897--- Q gi|254780623|r 203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL--- 279 (517) Q Consensus 203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~--- 279 (517) =.|..||--|+.|.. ..-|+.=.|..+ .+-.+|||-.. +.++...-+.+.+.-.+ ..+-.|..|+- T Consensus 436 ekflqEa~iMrnfdH----phIikLIGv~~e--~P~WivmEL~~---~GELr~yLq~nk~sL~l--~tL~ly~~Qi~tal 504 (974) T KOG4257 436 EKFLQEASIMRNFDH----PHIIKLIGVCVE--QPMWIVMELAP---LGELREYLQQNKDSLPL--RTLTLYCYQICTAL 504 (974) T ss_pred HHHHHHHHHHHHCCC----CCHHHEEEEEEC--CCEEEEEECCC---CHHHHHHHHHCCCCCHH--HHHHHHHHHHHHHH T ss_conf 999999999871788----211102566504--64267775142---46689999844353307--89999999998999 Q ss_pred ----HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH Q ss_conf ----448661787862289802895357434031216989 Q gi|254780623|r 280 ----RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517) Q Consensus 280 ----~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517) -..|.|-|--.-||+|.....+-+-|||.-..++.+ T Consensus 505 aYLeSkrfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~ 544 (974) T KOG4257 505 AYLESKRFVHRDIAARNILVSSPQCVKLADFGLSRYLEDD 544 (974) T ss_pred HHHHHHCHHHHHHHHHHEEECCCCEEEECCCCHHHHCCCC T ss_conf 9988611132323555345137441550002414322430 No 479 >cd05124 AFK Actin-Fragmin Kinase (AFK); catalytic domain. The AFK catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). AFK is found in slime molds, ciliates, and flowering plants. It catalyzes the transfer of the gamma-phosphoryl group from ATP specifically to threonine residues in the actin-fragmin complex. The phosphorylation sites are located at a minor contact site for DNase I and at an actin-actin contact site. Fragmin is an actin-binding protein that functions as a regulator of the microfilament system. It interferes with the growth of F-actin by severing actin filaments and capping their ends. The phosphorylation of the actin-fragmin complex inhibits its nucleation activity and results in calcium-dependent capping activity. Thus, AFK plays a role in regulating ac Probab=70.18 E-value=4.5 Score=19.70 Aligned_cols=148 Identities=15% Similarity=0.200 Sum_probs=76.7 Q ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 23687640310468877778899987532114685433469179999999887888655999988987202446776643 Q gi|254780623|r 147 RKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFR 226 (517) Q Consensus 147 ~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~ 226 (517) ..+||| .-|.|. .+. -...++.++.--.|.+|.+...+. ||..... |++.++. ....- T Consensus 23 g~iVvK-~s~tia----~E~-y~~~L~~~Lgv~~Pq~R~l~~~s~--E~~~m~~----------~L~~a~~----~~~~l 80 (238) T cd05124 23 GAIVVK-SSPNIA----SEY-FLSKLAKILGLPIPQMRVLEWNSS--EFTEMSE----------NLLKASS----EDECL 80 (238) T ss_pred CEEEEE-CCCCHH----HHH-HHHHHHHHHCCCCCCEEEECCCCH--HHHHHHH----------HHHHHHC----CCHHH T ss_conf 679997-377357----999-999999985999982586505687--8999999----------9999860----35267 Q ss_pred CHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEC-----------CCCCCCEEEE Q ss_conf 00001022178335300247863242677332002256899999999999897448661-----------7878622898 Q gi|254780623|r 227 VPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFH-----------ADLHPGNLFV 295 (517) Q Consensus 227 vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFH-----------aDPHpGNi~v 295 (517) -+++=-++.-...+.|||++|.++.......+.+..-++.+..+-.. +--|=|.| --=|+-||++ T Consensus 81 ~~~i~~el~~a~flimEYvpG~~l~~~~~~~~~~~~~~~~l~~LG~i----i~lDi~inN~DRlPl~~w~~~GN~~NIl~ 156 (238) T cd05124 81 ERRITLELEKAYLLIMEYVPGITLFKMTTHRASEYKGEERLIQLGKI----IALDIFINNSDRLPLAIWRNSGNFDNIIL 156 (238) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCHHHHHHHCCE----EEEEEEECCCCCCCCCCCCCCCCHHHEEE T ss_conf 79999998765654887607964002245345665567899972570----79898741787677553158888504799 Q ss_pred EC----CC-CEEEE---------ECCHHEECCHHHHHHH Q ss_conf 02----89-53574---------3403121698999999 Q gi|254780623|r 296 DS----KG-YIVAV---------DMGITGRLSKRERRFL 320 (517) Q Consensus 296 ~~----dg-~i~~l---------DfG~vg~l~~~~r~~l 320 (517) .. +| ...++ |++.++.+++..+..- T Consensus 157 ~~~~~~~~~~~~l~d~n~~~~~~~~e~i~~~~~~~~~k~ 195 (238) T cd05124 157 KDIPNKNGATEDLIDSNNTSLNNHYETIRSLDRTLIAKP 195 (238) T ss_pred ECCCCCCCCEEEECCCCCCCCCCCCEEEEEECHHHHHCC T ss_conf 631587886785012655335688103665133454076 No 480 >KOG0695 consensus Probab=70.06 E-value=7.5 Score=18.03 Aligned_cols=157 Identities=17% Similarity=0.202 Sum_probs=74.4 Q ss_pred CCEEEEECCCCCCCCHHHHHHHHCCCHHH-----HHHH-HHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHE Q ss_conf 83353002478632426773320022568-----9999-99999998974486617878622898028953574340312 Q gi|254780623|r 237 RDVITMEWIDGVKISDTEKLRACGHDLER-----LSVT-LVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITG 310 (517) Q Consensus 237 ~~VLvmE~i~G~~i~d~~~l~~~~~d~~~-----la~~-l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg 310 (517) +-..|.||+.|--+-=. +..+..-+++ -|+. ++-.| +-+-|..--|..--|.+++..|.|-+-|+||+. T Consensus 325 rlffvieyv~ggdlmfh--mqrqrklpeeharfys~ei~lal~f---lh~rgiiyrdlkldnvlldaeghikltdygmck 399 (593) T KOG0695 325 RLFFVIEYVNGGDLMFH--MQRQRKLPEEHARFYSAEICLALNF---LHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCK 399 (593) T ss_pred EEEEEEEEECCCCEEEE--HHHHHCCCHHHHHHHHHHHHHHHHH---HHHCCEEEEECCCCCEEECCCCCEEECCCCHHH T ss_conf 37999997248533665--6534138487742424669999988---865471553032120677266846532042243 Q ss_pred E-CCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH---H--CCCCCHHHCCHHHHHHHHH Q ss_conf 1-6989-999999766999718727899999984126677893689999998521---0--0133433311356899999 Q gi|254780623|r 311 R-LSKR-ERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRAIGE---P--IHGQSSDVISMGKLLTMLF 383 (517) Q Consensus 311 ~-l~~~-~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i~~~~~---~--~~~~~~~~~~~~~~~~~l~ 383 (517) + +.+. +...+. +-..-++-.++.=....-.+|--.+---+-+++. + +.|..-.+.+.. ..++ T Consensus 400 e~l~~gd~tstfc--------gtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n~d~nte---dylf 468 (593) T KOG0695 400 EGLGPGDTTSTFC--------GTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNPDMNTE---DYLF 468 (593) T ss_pred CCCCCCCCCCCCC--------CCCCCCCHHHHCCCCCCCEEHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHH---HHHH T ss_conf 1789986434335--------8975456365356424730219999999999971799634415788663437---7899 Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 7545279712888999999999988499 Q gi|254780623|r 384 EITELFDMMTRPELVMLQKTMVVVEGVA 411 (517) Q Consensus 384 ~~~~~~~~~~P~~~~ll~r~l~~lEG~~ 411 (517) ++.-...+++|+.+. .|+-.+|-|.. T Consensus 469 qvilekqiriprsls--vkas~vlkgfl 494 (593) T KOG0695 469 QVILEKQIRIPRSLS--VKASHVLKGFL 494 (593) T ss_pred HHHHHHHCCCCCCEE--HHHHHHHHHHH T ss_conf 999998606772100--14677888762 No 481 >PTZ00104 S-adenosylmethionine synthetase; Provisional Probab=69.89 E-value=7.5 Score=18.00 Aligned_cols=138 Identities=16% Similarity=0.194 Sum_probs=73.7 Q ss_pred EEEEEEECCHHHHHHHHHHHHHHHH-------HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCC Q ss_conf 3687640310468877778899987-------532114685433469179999999887888655999-98898720244 Q gi|254780623|r 148 KVAVKIIRPGVRKRFFRDIQVMYLI-------ARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLE-AAAFSEMAENT 219 (517) Q Consensus 148 ~VaVKV~rP~i~~~i~~Dl~~l~~~-------~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~E-a~n~~~~~~~~ 219 (517) .+.+.-|-|+|..-+..+...-..- ..++..=.|. .+-..+.|.++ ++.+...|++- T Consensus 95 ~~~i~~QSpDIa~GVd~~~~~~~~GAGDQGiMFGYA~~ET~~---------------lMPlpi~lAh~L~~~l~~~Rk~g 159 (391) T PTZ00104 95 LVAIEQQSPDIAQGVGVDFGGEEIGAGDQGMMFGYATDETET---------------LMPLTHELARGLAMRLSELRRNG 159 (391) T ss_pred EEEEECCCHHHHHHHCCCCCHHHCCCCCCCEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHHHHHCC T ss_conf 898844581665311358641102777541577676279611---------------37739999999999999999659 Q ss_pred CCCCCCCCHHCCCHHCCCCEEEEECCCCC------C--CCHH--HHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCC Q ss_conf 67766430000102217833530024786------3--2426--773320022568999999999998974486617878 Q gi|254780623|r 220 VKDQGFRVPKIDWNRTERDVITMEWIDGV------K--ISDT--EKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLH 289 (517) Q Consensus 220 ~~~~~v~vP~vy~~~st~~VLvmE~i~G~------~--i~d~--~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFHaDPH 289 (517) .+|-.-+| ++.=.|+||-++- | ++.+ ..-+..+++.+++-+.+.+-..+.++...++..|- T Consensus 160 ------~l~~LrPD--~KsQVTv~Y~~~~~~~~~~P~ri~tVViStQH~~~v~~~~lr~~i~e~vi~~v~~~~~l~~~t- 230 (391) T PTZ00104 160 ------ILPWARPD--AKTQVTVEYEYDTRGGKLTPKRVHTILISTQHDEGVTNETIREDLMEKVIKAVIPAKLLDENT- 230 (391) T ss_pred ------CCCCCCCC--CCEEEEEEEECCCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCC- T ss_conf ------98654788--723699996168766676406898899960478867999999999998998753031289785- Q ss_pred CCEEEEECCCCEEE----EECCHHEE Q ss_conf 62289802895357----43403121 Q gi|254780623|r 290 PGNLFVDSKGYIVA----VDMGITGR 311 (517) Q Consensus 290 pGNi~v~~dg~i~~----lDfG~vg~ 311 (517) +++|.|.|+.+. -|.|++|| T Consensus 231 --~~~INPtG~FviGGP~~D~GLTGR 254 (391) T PTZ00104 231 --KYHLNPSGRFVIGGPHGDAGLTGR 254 (391) T ss_pred --EEEECCCCCEEECCCCCCCCCCCC T ss_conf --799889999642898645577777 No 482 >TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases; InterPro: IPR004507 This family contains flavoproteins, which are aromatic acid decarboxylases. An example is the Saccharomyces cerevisiae gene, PAD1 that encodes phenylacrylic acid decarboxylase. Mutations of this gene are viable and confer resistance to cinnamic acid. ; GO: 0016831 carboxy-lyase activity. Probab=69.61 E-value=3.1 Score=21.01 Aligned_cols=56 Identities=27% Similarity=0.274 Sum_probs=40.1 Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHH-------HHHHH-H-HHHHHHHH Q ss_conf 9999710045988999999988748878998999998754047889999-------99867-6-66778888 Q gi|254780623|r 71 GQFLATRPDLIGKKLSEDLALLQDKMDFFPTNTARLSVASALKAPIEEL-------YCEFD-D-PIAAASIA 133 (517) Q Consensus 71 GQ~lstR~Dllp~~~~~eL~~Lqd~vpp~~~~~v~~~ie~elg~~~~~~-------F~~fd-e-PlasASia 133 (517) ||+++.| +.+.|+.+=-+|--+=...++.++..|+|-.+.++ |+.=| - ||+|||-- T Consensus 11 GvI~G~R-------LL~~Lk~~GvE~~LviS~~A~~tiK~Etd~~~~~v~~LAT~~Y~~~D~~a~i~SGSf~ 75 (181) T TIGR00421 11 GVIYGIR-------LLEVLKELGVEVHLVISKWAKKTIKYETDYDPGEVEELATKYYDEDDFAAPIASGSFK 75 (181) T ss_pred HHHHHHH-------HHHHHHHCCCEEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCC T ss_conf 8999999-------9999986793687863558999998853899889999967532611211000157867 No 483 >KOG0905 consensus Probab=68.24 E-value=8.1 Score=17.76 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.5 Q ss_pred CCCCCCCEEEEECCCCEEEEECCH Q ss_conf 178786228980289535743403 Q gi|254780623|r 285 HADLHPGNLFVDSKGYIVAVDMGI 308 (517) Q Consensus 285 HaDPHpGNi~v~~dg~i~~lDfG~ 308 (517) -||=|--|||.+..|..--||||- T Consensus 1200 IcDRHNDNIMl~~sGHmFHIDFGK 1223 (1639) T KOG0905 1200 ICDRHNDNIMLTKSGHMFHIDFGK 1223 (1639) T ss_pred CCCCCCCCEEEECCCCEEEEEHHH T ss_conf 022567725783057379974333 No 484 >COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only] Probab=67.84 E-value=8.2 Score=17.70 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=5.7 Q ss_pred CCHHHHHHHHHHHHC Q ss_conf 872789999998412 Q gi|254780623|r 330 RDYQRVADVHFEAGY 344 (517) Q Consensus 330 ~D~~~~~~~l~~lg~ 344 (517) .|++.++..+...|. T Consensus 447 ~~~~~lv~~i~q~g~ 461 (637) T COG4248 447 MDYDHLVAQIQQRGG 461 (637) T ss_pred CCHHHHHHHHHHHHH T ss_conf 011699999986302 No 485 >cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide. Probab=67.56 E-value=7.8 Score=17.86 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=24.4 Q ss_pred CEEEEECCCCEEEEECCH--------------HEECCHHHHHHHHHHHHHH Q ss_conf 228980289535743403--------------1216989999999766999 Q gi|254780623|r 291 GNLFVDSKGYIVAVDMGI--------------TGRLSKRERRFLAEILYGF 327 (517) Q Consensus 291 GNi~v~~dg~i~~lDfG~--------------vg~l~~~~r~~l~~l~~a~ 327 (517) .|-- ..+|.++++|+|. +|..++..++.+..++.|. T Consensus 75 ~~~~-i~~gdlvLiD~G~~Y~gy~SDiTRT~~~G~~s~~~~~~Y~~Vl~a~ 124 (224) T cd01085 75 SNRK-ISPDGLYLIDSGGQYLDGTTDITRTVHLGEPTAEQKRDYTLVLKGH 124 (224) T ss_pred CCCC-CCCCCEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH T ss_conf 6733-3689836772792251644665534206999999999999999999 No 486 >cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). Probab=66.63 E-value=8.5 Score=17.61 Aligned_cols=91 Identities=18% Similarity=0.297 Sum_probs=43.8 Q ss_pred HHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH-HHHCCEECCCC--CCCEEEE-ECCCCEEEEECCH Q ss_conf 221783353002478632426773320022568999999999998-97448661787--8622898-0289535743403 Q gi|254780623|r 233 NRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLH-TLRDGFFHADL--HPGNLFV-DSKGYIVAVDMGI 308 (517) Q Consensus 233 ~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~q-i~~~GfFHaDP--HpGNi~v-~~dg~i~~lDfG~ 308 (517) +++.+.=+.-+|++|.+++|.+.++-.-.---.+-..+ .+.+.| .-..|...++. -.||+.. .|-|.+-=+|+|. T Consensus 64 ~~l~~~gi~~~fv~G~RVTd~~tl~vv~~~~G~vn~~i-~a~ls~g~~~~g~~g~~~~~~~g~~i~a~p~g~~dgiD~G~ 142 (280) T cd04237 64 QRLAERGLEPRYHRGLRITDAAALECVKEAAGAVRLEI-EALLSMGLPNSPMAGARIRVVSGNFVTARPLGVVDGVDFGH 142 (280) T ss_pred HHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCC T ss_conf 99998699746217877799999999999999999999-99997053435653557234058658988865314744467 Q ss_pred HEECCHHHHHHHHHHH Q ss_conf 1216989999999766 Q gi|254780623|r 309 TGRLSKRERRFLAEIL 324 (517) Q Consensus 309 vg~l~~~~r~~l~~l~ 324 (517) ||++..-....+..++ T Consensus 143 vG~v~~Vn~~~l~~ll 158 (280) T cd04237 143 TGEVRRIDADAIRRQL 158 (280) T ss_pred CCCCCEEEHHHHHHHH T ss_conf 9830266499998687 No 487 >PTZ00303 phosphatidylinositol kinase; Provisional Probab=66.60 E-value=8.7 Score=17.52 Aligned_cols=32 Identities=25% Similarity=0.447 Sum_probs=27.2 Q ss_pred HHHCCEECCCCCCCEEEEECCCCEEEEECCHH Q ss_conf 97448661787862289802895357434031 Q gi|254780623|r 278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGIT 309 (517) Q Consensus 278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~v 309 (517) ++.+=|--+|-|-||.||-+.|-|--|||-.+ T Consensus 1142 LLNYIFsIGDRHk~NVlI~~nGAllHIDfrfi 1173 (1374) T PTZ00303 1142 LLNYIFSIGDRHKGNVLIGTNGALLHIDFRFI 1173 (1374) T ss_pred HHHHHHHCCCCCCCCEEECCCCCEEEEEEEEE T ss_conf 99988741542458568747761799888888 No 488 >KOG0986 consensus Probab=65.07 E-value=9.2 Score=17.31 Aligned_cols=104 Identities=18% Similarity=0.258 Sum_probs=65.1 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCC-HHHHHHHHCCCHHHH--HHHHHHHHHHHHHH Q ss_conf 999988987202446776643000010221783--3530024786324-267733200225689--99999999998974 Q gi|254780623|r 206 RLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKIS-DTEKLRACGHDLERL--SVTLVQSFLLHTLR 280 (517) Q Consensus 206 ~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~-d~~~l~~~~~d~~~l--a~~l~~~~~~qi~~ 280 (517) .+|..++++...- ++|--.|. |-|+. +|||.-+.|--+. .+-.+-..|.+-++. =..=+-+-++.+-. T Consensus 233 LnEk~iL~kV~s~------FiVslaYA-feTkd~LClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~ 305 (591) T KOG0986 233 LNEKQILEKVSSP------FIVSLAYA-FETKDALCLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHR 305 (591) T ss_pred HHHHHHHHHHCCC------CEEEEEEE-ECCCCCEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 6799999874567------37998661-1377733898982038731477111589888657889999999864798874 Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHH Q ss_conf 486617878622898028953574340312169899 Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRE 316 (517) Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~ 316 (517) .+..--|.-|-||++++.|.+-+=|.|....+++.. T Consensus 306 ~~iVYRDLKPeNILLDd~GhvRISDLGLAvei~~g~ 341 (591) T KOG0986 306 RRIVYRDLKPENILLDDHGHVRISDLGLAVEIPEGK 341 (591) T ss_pred CCEEECCCCHHHEEECCCCCEEEECCCEEEECCCCC T ss_conf 553430378656545468976760351477647897 No 489 >PRK09566 nirA ferredoxin-nitrite reductase; Reviewed Probab=65.02 E-value=1.3 Score=23.80 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=12.4 Q ss_pred HHHHCCCC-----CCHHHHHHHHHHHH Q ss_conf 99710045-----98899999998874 Q gi|254780623|r 73 FLATRPDL-----IGKKLSEDLALLQD 94 (517) Q Consensus 73 ~lstR~Dl-----lp~~~~~eL~~Lqd 94 (517) -+.||.++ ..++..+-++.|++ T Consensus 99 ~iTTRQniQlh~I~~~d~~~i~~~L~~ 125 (513) T PRK09566 99 DITTRQNLQLRGILLEDLPEILNRLKA 125 (513) T ss_pred EEECCCCHHHCCCCHHHHHHHHHHHHH T ss_conf 997371121158777889999999998 No 490 >KOG4720 consensus Probab=64.99 E-value=9.3 Score=17.30 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=67.5 Q ss_pred EECCCCCCCEEEEE-CCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-----CCCCHHHHHH Q ss_conf 66178786228980-28953574340312169899999997669997187278999999841266-----7789368999 Q gi|254780623|r 283 FFHADLHPGNLFVD-SKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVP-----RHHNRFSFAQ 356 (517) Q Consensus 283 fFHaDPHpGNi~v~-~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~-----~~~d~~~~~~ 356 (517) |-|-|.--|||+++ ..|.+-||||--.| .+-....+..-+-+++-+. ...+++.=.+ T Consensus 250 FcHNDLL~~Niiy~~~~~~v~fIDYEYa~-----------------yNY~afDIgNHFnE~aGv~evDYSlyp~rE~Q~q 312 (391) T KOG4720 250 FCHNDLLCGNIIYDSEKGSVEFIDYEYAG-----------------YNYQAFDIGNHFNEYAGVEEVDYSLYPTREEQLQ 312 (391) T ss_pred EEECCHHHCCEEECCCCCCEEEEEECCCC-----------------CCHHHEEHHHHHHHHCCCCCCCHHCCCCHHHHHH T ss_conf 86044221235330566837888611466-----------------6511100566678653887664101878889999 Q ss_pred HHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH Q ss_conf 9998521001334333113568999997545279712888999999999988499876889888999 Q gi|254780623|r 357 AIRAIGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVARMLNPEFNMWVS 423 (517) Q Consensus 357 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~~~ll~r~l~~lEG~~~~LdP~~d~~~~ 423 (517) -++..++.+.+...++-.+..++-++..-+ +-+.+.--+=+++..+-. --|||+... T Consensus 313 wl~~YLq~~kg~evs~~eVe~lfvqvn~Fa------lAsHlfWavWAllQA~~S----tIdFdylgY 369 (391) T KOG4720 313 WLRDYLQAYKGKEVSDTEVETLFVQVNQFA------LASHLFWAVWALLQAQNS----TIDFDYLGY 369 (391) T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHCC----CCCCCCHHH T ss_conf 999997540675578899999999988898------887899999999986407----502332026 No 491 >pfam05542 DUF760 Protein of unknown function (DUF760). This family contains several uncharacterized plant proteins. Probab=64.84 E-value=6.1 Score=18.70 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=23.5 Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHCC Q ss_conf 999997100459889999999887488 Q gi|254780623|r 70 MGQFLATRPDLIGKKLSEDLALLQDKM 96 (517) Q Consensus 70 lGQ~lstR~Dllp~~~~~eL~~Lqd~v 96 (517) |-|+|-+.|.|||.+.-++|++||++- T Consensus 9 Ls~iL~~~PhL~paAv~qqLe~L~~dr 35 (328) T pfam05542 9 LSQILRTHPHLLPAAVDQQLEQLQTDR 35 (328) T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHH T ss_conf 999997287433599999999988888 No 492 >PRK13028 tryptophan synthase subunit beta; Provisional Probab=62.34 E-value=8.8 Score=17.46 Aligned_cols=78 Identities=14% Similarity=0.206 Sum_probs=57.7 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHCCCCHHHHHHHHH--HHH Q ss_conf 078999999960428999999997100459889999999887488--7899899999875404788999999867--666 Q gi|254780623|r 52 RSDRLARAMNRLGPSYVKMGQFLATRPDLIGKKLSEDLALLQDKM--DFFPTNTARLSVASALKAPIEELYCEFD--DPI 127 (517) Q Consensus 52 ~~~rlr~~le~LGptfiKlGQ~lstR~Dllp~~~~~eL~~Lqd~v--pp~~~~~v~~~ie~elg~~~~~~F~~fd--ePl 127 (517) .|+-|..+|+||--.|-|. .=.++|.+||..+..+- .|-|.-.++. +++++|. -++|-..| .|- T Consensus 23 vpe~l~~~l~el~~~~~~~---------~~d~~F~~e~~~~~~~y~GRPTPL~~A~~-Ls~~lgg--a~IylKrEdln~t 90 (403) T PRK13028 23 VPPELKPALDEIEAAYEEI---------KKDPDFINELRYLLKHYVGRPTPLYHAKR-LSEKLGG--AQIYLKREDLNHT 90 (403) T ss_pred CCHHHHHHHHHHHHHHHHH---------HCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHCCC--CEEEEEECCCCCC T ss_conf 8598999999999999999---------66999999999999864899866577777-7865698--6799985057877 Q ss_pred HH----HHHHHHHHHHEE Q ss_conf 77----888865555021 Q gi|254780623|r 128 AA----ASIAQVHPAVVH 141 (517) Q Consensus 128 as----ASiaQVh~A~l~ 141 (517) +| ..|+|++.|+-. T Consensus 91 GSHKiNnai~QallAk~~ 108 (403) T PRK13028 91 GAHKINHCLGEALLAKRM 108 (403) T ss_pred CCCCHHHHHHHHHHHHHC T ss_conf 775233089999999983 No 493 >PRK12459 S-adenosylmethionine synthetase; Provisional Probab=62.14 E-value=10 Score=16.93 Aligned_cols=80 Identities=21% Similarity=0.391 Sum_probs=52.0 Q ss_pred CHHCCCHHCCCCEEEEECCCCCCC--CHH--HHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEE Q ss_conf 000010221783353002478632--426--7733200225689999999999989744866178786228980289535 Q gi|254780623|r 227 VPKIDWNRTERDVITMEWIDGVKI--SDT--EKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIV 302 (517) Q Consensus 227 vP~vy~~~st~~VLvmE~i~G~~i--~d~--~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~ 302 (517) +|-.-+| ++.=.|+||-+|.|+ +.+ ..-+..+.+.+.+-+.+.+...+.++...+..- .=+++|.|.|+.+ T Consensus 158 ~~~LrPD--~KsQVTv~Y~~~kP~ri~tVViS~QH~~~v~~~~l~~~I~~~Vi~~v~~~~~~~~---~t~~~INPtGrFv 232 (383) T PRK12459 158 LPGLLPD--GKTQVTVEYEDGRPVRVDTIVVSAQHDEDVDLATLRRDVIENVIKPVFEDFWLDD---ETRILVNPTGRFV 232 (383) T ss_pred CCCCCCC--CCEEEEEEEECCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCHHHCCCC---CCEEEECCCCCEE T ss_conf 8754788--7448999861698648989999406787478999999999999987363226898---8479988989967 Q ss_pred E----EECCHHEE Q ss_conf 7----43403121 Q gi|254780623|r 303 A----VDMGITGR 311 (517) Q Consensus 303 ~----lDfG~vg~ 311 (517) . -|.|++|| T Consensus 233 iGGP~~D~GLTGR 245 (383) T PRK12459 233 VGGPAADTGLTGR 245 (383) T ss_pred ECCCCCCCCCCCC T ss_conf 6887645577777 No 494 >COG1561 Uncharacterized stress-induced protein [Function unknown] Probab=62.08 E-value=8.9 Score=17.44 Aligned_cols=14 Identities=14% Similarity=0.116 Sum_probs=4.7 Q ss_pred CHHHHHHHHHHHHH Q ss_conf 98999999976699 Q gi|254780623|r 313 SKRERRFLAEILYG 326 (517) Q Consensus 313 ~~~~r~~l~~l~~a 326 (517) +...-..+..+..- T Consensus 81 n~~ll~~~~~~~~~ 94 (290) T COG1561 81 NEDLLKQLVTLLKE 94 (290) T ss_pred CHHHHHHHHHHHHH T ss_conf 89999999999999 No 495 >COG4579 Isocitrate dehydrogenase kinase/phosphatase [Signal transduction mechanisms] Probab=61.97 E-value=3.7 Score=20.42 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=5.6 Q ss_pred HHHHHHHCCCCCCHHH Q ss_conf 9999971004598899 Q gi|254780623|r 70 MGQFLATRPDLIGKKL 85 (517) Q Consensus 70 lGQ~lstR~Dllp~~~ 85 (517) +-|.+..|-.+..+-. T Consensus 43 ~Qqa~~~RI~lYd~~V 58 (578) T COG4579 43 VQQAMKNRIHLYDHHV 58 (578) T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999997778888889 No 496 >pfam11517 Nab2 Nuclear abundant poly(A) RNA-bind protein 2 (Nab2). Nab2 is a yeast heterogeneous nuclear ribonucleoprotein that modulates poly(A) tail length and mRNA. This is the N terminal domain of the protein which mediates interactions with the C-terminal globular domain, Myosin-like protein 1 and the mRNA export factor, Gfd1.The N-terminal domain of Nab2 shows a structure of a helical fold. The N terminal domain of Nab2 is thought to mediate protein protein interactions that facilitate the nuclear export of mRNA. An essential hydrophobic Phe73 patch on the N terminal domain is thought to be a important component of the interface between Nab2 and Mlp1. Probab=61.76 E-value=9.2 Score=17.34 Aligned_cols=42 Identities=17% Similarity=0.227 Sum_probs=32.0 Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHC-----CCCHHHHHHHHH Q ss_conf 899999998874887899899999875404-----788999999867 Q gi|254780623|r 83 KKLSEDLALLQDKMDFFPTNTARLSVASAL-----KAPIEELYCEFD 124 (517) Q Consensus 83 ~~~~~eL~~Lqd~vpp~~~~~v~~~ie~el-----g~~~~~~F~~fd 124 (517) +.+++||..|.|.|++-.+..+-++--..+ |.+++.+++.+. T Consensus 48 esvvqELtsLFDsVs~eal~dVVqtaf~ale~Lq~Gd~~e~i~~Kl~ 94 (107) T pfam11517 48 ESIVQELTSLFDSVSTQALADVVQTAFFALELLQQGDDLETVYSKLR 94 (107) T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 78999999996048999999999999999999975780999999999 No 497 >KOG2464 consensus Probab=60.70 E-value=4.7 Score=19.60 Aligned_cols=20 Identities=45% Similarity=0.815 Sum_probs=18.2 Q ss_pred HCCEECCCCCCCEEEEECCC Q ss_conf 44866178786228980289 Q gi|254780623|r 280 RDGFFHADLHPGNLFVDSKG 299 (517) Q Consensus 280 ~~GfFHaDPHpGNi~v~~dg 299 (517) ..||=|=|.|+|||++.+.+ T Consensus 156 ~~~~~hrdl~~gnili~k~~ 175 (246) T KOG2464 156 SLGFEHRDLHLGNILIKKTG 175 (246) T ss_pred HCCCEEECCCCCCEEEECCC T ss_conf 23404640214727984156 No 498 >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit; InterPro: IPR005892 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits this transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L. lactis functionally complements an Escherichia coli proU mutant. The complementing locus is similar to a opuA locus in Bacillus subtlis. This clarifies the differences in nomenclature.; GO: 0005524 ATP binding, 0015171 amino acid transmembrane transporter activity, 0006865 amino acid transport, 0016020 membrane. Probab=60.02 E-value=9.2 Score=17.32 Aligned_cols=41 Identities=24% Similarity=0.320 Sum_probs=19.1 Q ss_pred HHHHHHHHCCCC-------------CCHHHHHHHHHHHHCCC------CCCHHHHHHHHH Q ss_conf 999999710045-------------98899999998874887------899899999875 Q gi|254780623|r 69 KMGQFLATRPDL-------------IGKKLSEDLALLQDKMD------FFPTNTARLSVA 109 (517) Q Consensus 69 KlGQ~lstR~Dl-------------lp~~~~~eL~~Lqd~vp------p~~~~~v~~~ie 109 (517) =+..-|+.-||+ .-.++-+||.+||+++. .++.+|+-++-. T Consensus 140 Gl~RALa~~PdilLMDEaFsALDPliR~~lQdEl~kLq~~~~kTIvFitHDlDEA~rigD 199 (372) T TIGR01186 140 GLARALAAEPDILLMDEAFSALDPLIRDSLQDELKKLQATLQKTIVFITHDLDEALRIGD 199 (372) T ss_pred HHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHH T ss_conf 999987438780540476433571001678899999998609808999417678876751 No 499 >COG3570 StrB Streptomycin 6-kinase [Defense mechanisms] Probab=58.02 E-value=12 Score=16.43 Aligned_cols=53 Identities=23% Similarity=0.338 Sum_probs=30.6 Q ss_pred HHHHHHHHHHHHCCEECCCCCCCEEEEECC-CCEEEEECCHHEECCHHHHHHHH Q ss_conf 999999998974486617878622898028-95357434031216989999999 Q gi|254780623|r 269 TLVQSFLLHTLRDGFFHADLHPGNLFVDSK-GYIVAVDMGITGRLSKRERRFLA 321 (517) Q Consensus 269 ~l~~~~~~qi~~~GfFHaDPHpGNi~v~~d-g~i~~lDfG~vg~l~~~~r~~l~ 321 (517) +..+..+.+-=+-+-.|+|.|-|||+=.+. |=+++=--|.+|.=.=+.-..|. T Consensus 149 ~~A~~LL~~p~di~pLHGDlHH~Nild~~~rGWlvIDPkgl~Gdrg~D~ANlf~ 202 (274) T COG3570 149 RAAQTLLDTPRDIRPLHGDLHHGNILDGDRRGWLVIDPKGLIGDRGFDYANLFC 202 (274) T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHC T ss_conf 999998648664656766444543146886751787654445865522676524 No 500 >pfam07387 Seadorna_VP7 Seadornavirus VP7. This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length. The function of this family is unknown. However, it appears to be distantly related to protein kinases. Probab=57.80 E-value=6.5 Score=18.47 Aligned_cols=27 Identities=41% Similarity=0.673 Sum_probs=0.0 Q ss_pred CEECCCCCCCEEEEECCCCEEEEECCH Q ss_conf 866178786228980289535743403 Q gi|254780623|r 282 GFFHADLHPGNLFVDSKGYIVAVDMGI 308 (517) Q Consensus 282 GfFHaDPHpGNi~v~~dg~i~~lDfG~ 308 (517) |..|||-.|-|||-++.|-+-+.|-+. T Consensus 163 ~~lHGDcnp~niMcDk~G~lKlVDP~~ 189 (308) T pfam07387 163 GTLHGDCNPQNLMCDKNGYLKLVDPVC 189 (308) T ss_pred CEECCCCCHHHEEECCCCCEEECCHHH T ss_conf 713367787775346889778607466 Done!