HHsearch alignment for GI: 254780623 and conserved domain: smart00090

>smart00090 RIO RIO-like kinase.
Probab=99.15  E-value=5.2e-10  Score=96.74  Aligned_cols=198  Identities=22%  Similarity=0.286  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCHHHHHHHHHHH
Q ss_conf             986766677888865555021288872368764031046887777889998753211--468543346917999999988
Q gi|254780623|r  121 CEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQE--KLLPSMRRLCFSAVVRALEQV  198 (517)
Q Consensus       121 ~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~--~~~~~~~~~~~~~~~~e~~~~  198 (517)
T Consensus        30 ~~l~~~I~~GKEa~Vy~a~~~~~~-g~~vavKi~r~~~~-----~Fk~~~---~y~~gd~Rf~-~~~~~~~~~~~~wA--   97 (237)
T smart00090       30 SAIGGCISTGKEANVYHALDFDGS-GKERAVKIYRTGTL-----EFKRRD---RYVDGDFRFK-YRKINPRKLVRLWA--   97 (237)
T ss_pred             HHHCCEEECCCCCEEEEEEEECCC-CCEEEEEEEECCCC-----CCCCHH---HHCCCCCCCC-CCCCCHHHHHHHHH--
T ss_conf             553975402417037999844799-98899999774752-----305376---6336541025-68889889999999--


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCC---CHHHHHHHHHHHHH
Q ss_conf             788865599998898720244677664300001022178335300247863242677332002---25689999999999
Q gi|254780623|r  199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGH---DLERLSVTLVQSFL  275 (517)
Q Consensus       199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~---d~~~la~~l~~~~~  275 (517)
T Consensus        98 -------~kEf~nL~rl~~-----aGv~VP~Pi--~~~~nvlvMefIg~~~~pa-p~L~d~~~~~~~~~~~~~~il~~~-  161 (237)
T smart00090       98 -------EKEFRNLQRLYE-----AGVPVPKPI--AWRRNVLVMEFIGGDGLPA-PRLKDVEPEEEEEFELYDDILEEM-  161 (237)
T ss_pred             -------HHHHHHHHHHHH-----CCCCCCCEE--EEECCEEEEEEECCCCCCC-CCHHCCCCCHHHHHHHHHHHHHHH-
T ss_conf             -------999999999998-----599999848--9648989999746889745-432116888577999999999999-


Q ss_pred             HHHHHCC-EECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             9897448-661787862289802895357434031216989999999766999718727899999984126677893689
Q gi|254780623|r  276 LHTLRDG-FFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSF  354 (517)
Q Consensus       276 ~qi~~~G-fFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~  354 (517)
T Consensus       162 ~~~y~~g~lVHgDLSEyNIL~~-~~~~~iID~~QaV~~~hp~-------A~~~L~RDi~nI~~fF~k~g~~~~--~~~e~  231 (237)
T smart00090      162 RKLYKEGELVHGDLSEYNILVH-DGKVVIIDVSQSVELDHPM-------ALEFLERDIRNIIRFFRRKGVDEL--DEEEL  231 (237)
T ss_pred             HHHHHHCCEEECCHHHHHHEEE-CCCEEEEECCCCCCCCCCC-------HHHHHHHHHHHHHHHHHHCCCCCC--CHHHH
T ss_conf             9999827952036046551420-8967999467523689988-------899999999999999987399979--99999


Q ss_pred             HH
Q ss_conf             99
Q gi|254780623|r  355 AQ  356 (517)
Q Consensus       355 ~~  356 (517)
T Consensus       232 ~~  233 (237)
T smart00090      232 FE  233 (237)
T ss_pred             HH
T ss_conf             87