BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780623|ref|YP_003065036.1| 2-polyprenylphenol
6-hydroxylase [Candidatus Liberibacter asiaticus str. psy62]
         (517 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780623|ref|YP_003065036.1| 2-polyprenylphenol 6-hydroxylase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 517

 Score = 1060 bits (2742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/517 (100%), Positives = 517/517 (100%)

Query: 1   MKEYYELFRIAWILIREGVIVSLPSDRLPPIIVFGKKIASLFVRRNIKKCQRSDRLARAM 60
           MKEYYELFRIAWILIREGVIVSLPSDRLPPIIVFGKKIASLFVRRNIKKCQRSDRLARAM
Sbjct: 1   MKEYYELFRIAWILIREGVIVSLPSDRLPPIIVFGKKIASLFVRRNIKKCQRSDRLARAM 60

Query: 61  NRLGPSYVKMGQFLATRPDLIGKKLSEDLALLQDKMDFFPTNTARLSVASALKAPIEELY 120
           NRLGPSYVKMGQFLATRPDLIGKKLSEDLALLQDKMDFFPTNTARLSVASALKAPIEELY
Sbjct: 61  NRLGPSYVKMGQFLATRPDLIGKKLSEDLALLQDKMDFFPTNTARLSVASALKAPIEELY 120

Query: 121 CEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLL 180
           CEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLL
Sbjct: 121 CEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLL 180

Query: 181 PSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVI 240
           PSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVI
Sbjct: 181 PSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVI 240

Query: 241 TMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGY 300
           TMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGY
Sbjct: 241 TMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGY 300

Query: 301 IVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRA 360
           IVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRA
Sbjct: 301 IVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRA 360

Query: 361 IGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVARMLNPEFNM 420
           IGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVARMLNPEFNM
Sbjct: 361 IGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVARMLNPEFNM 420

Query: 421 WVSSEPIVEEWIRDHLGAKSCVVDFQDGIKTAFRLVQAAPQLSISVEKILKSLVESSVKD 480
           WVSSEPIVEEWIRDHLGAKSCVVDFQDGIKTAFRLVQAAPQLSISVEKILKSLVESSVKD
Sbjct: 421 WVSSEPIVEEWIRDHLGAKSCVVDFQDGIKTAFRLVQAAPQLSISVEKILKSLVESSVKD 480

Query: 481 KYLDFPKKESSRVYDFLNKLVLWSIFGALLYIISIMR 517
           KYLDFPKKESSRVYDFLNKLVLWSIFGALLYIISIMR
Sbjct: 481 KYLDFPKKESSRVYDFLNKLVLWSIFGALLYIISIMR 517


>gi|254780663|ref|YP_003065076.1| carbonate dehydratase [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 207

 Score = 25.4 bits (54), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 13/58 (22%)

Query: 19 VIVSLPSDRLPPIIVFGKKIASLFVRRNIKKCQRSDRLARAMNRLGPSYVKMGQFLAT 76
          +I+S    R+ P  +F  K   LFV RN+               + P Y   GQ  AT
Sbjct: 37 MIISCCDSRVAPETIFNAKPGELFVVRNVAN-------------IVPPYEPDGQHHAT 81


>gi|254781103|ref|YP_003065516.1| penicillin-binding transmembrane protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 598

 Score = 25.0 bits (53), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 197 QVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITM 242
           Q  ++ +DLR++     E+ EN  K     V  +  N +  +VI+M
Sbjct: 254 QPIRLALDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISM 299


>gi|254781163|ref|YP_003065576.1| hypothetical protein CLIBASIA_05350 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 214

 Score = 24.6 bits (52), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 129 AASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFR 164
           A  IAQ+   + +  NGY +   KI +  V K FF 
Sbjct: 109 AKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDFFN 144


>gi|254780826|ref|YP_003065239.1| phosphoenolpyruvate carboxykinase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 509

 Score = 24.6 bits (52), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 238 DVITMEWIDGVKISDT--EKLRACGHDLERLSVTLVQSFLLHTL 279
           D +  + +D +K  D   + L AC H    +SV +V  +  H+L
Sbjct: 80  DTLKADMLDYIKDKDLFLQDLVACPHTKNAISVCVVTQYAWHSL 123


>gi|254781187|ref|YP_003065600.1| putative phage terminase, large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 367

 Score = 24.6 bits (52), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 5/46 (10%)

Query: 206 RLEAAAFSEMAENTVKDQG-----FRVPKIDWNRTERDVITMEWID 246
            L    F  M  NT +  G     F +P  DW R + D  T+E ID
Sbjct: 217 ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262


>gi|254781024|ref|YP_003065437.1| electron transfer flavoprotein-ubiquinone oxidoreductase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 554

 Score = 23.9 bits (50), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 8/29 (27%), Positives = 18/29 (62%)

Query: 474 VESSVKDKYLDFPKKESSRVYDFLNKLVL 502
           +E++ + K +D+PK +    +D ++ L L
Sbjct: 435 LEAASQHKKIDYPKPDGKLTFDIMSSLFL 463


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.326    0.139    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 305,301
Number of Sequences: 1233
Number of extensions: 11677
Number of successful extensions: 46
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 8
length of query: 517
length of database: 328,796
effective HSP length: 78
effective length of query: 439
effective length of database: 232,622
effective search space: 102121058
effective search space used: 102121058
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 40 (20.0 bits)