HHsearch alignment for GI: 254780624 and conserved domain: COG0144
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis].
Probab=98.47 E-value=2.1e-07 Score=67.93 Aligned_cols=115 Identities=25% Similarity=0.399 Sum_probs=83.9
Q ss_pred HHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCE-EEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC---C
Q ss_conf 8520644679977986023355777776641388632-78721332222111100000112222222222233345---7
Q gi|254780624|r 61 VTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQ-IVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP---F 136 (265)
Q Consensus 61 i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~-v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp---~ 136 (265)
T Consensus 149 a~~L~p~pg--e~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~~ 225 (355)
T COG0144 149 ALVLDPKPG--ERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELLP 225 (355)
T ss_pred HHHCCCCCC--CEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCC-CEEEEECCCCCCCCCCC
T ss_conf 997199997--968880799976999999966899876997449878999999999971998-34899513301431134
Q ss_pred CCCCCCCCE-----EEEE-ECCCHH----------------HHHHHCCCCHHCCCCCEEEEEECCCC
Q ss_conf 554467403-----6642-013213----------------44320121000485211776305544
Q gi|254780624|r 137 EANSFDACT-----LAFG-IRNMPH----------------ITLVLQEIYRILKCGGRLLVLEFSEV 181 (265)
Q Consensus 137 ~d~sfD~V~-----~sf~-l~~~~d----------------~~~~l~e~~RvLKpGG~~~i~df~~p 181 (265)
T Consensus 226 ~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LV---YSTC 289 (355)
T COG0144 226 GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLV---YSTC 289 (355)
T ss_pred CCCCCCEEEECCCCCCCEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE---EEEC
T ss_conf 557778599879998771133581232038999999999999999999998448798899---9902