HHsearch alignment for GI: 254780624 and conserved domain: COG1041
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair].
Probab=99.03 E-value=3.4e-10 Score=85.85 Aligned_cols=118 Identities=23% Similarity=0.317 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCC
Q ss_conf 17999999852064467997798602335577777664138863278721332222111100000112222222222233
Q gi|254780624|r 53 HRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAE 132 (265)
Q Consensus 53 ~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~ 132 (265)
T Consensus 182 ~P~lAR~mVNLa~v~~G~--~vlDPFcGTGgiLiEagl-~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~ 256 (347)
T COG1041 182 DPRLARAMVNLARVKRGE--LVLDPFCGTGGILIEAGL-M--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDAT 256 (347)
T ss_pred CHHHHHHHHHHHCCCCCC--EEECCCCCCCHHHHHHHH-C--CCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 989999987774164698--764576783488883664-2--75676032379998556641566276761688730221
Q ss_pred CCCCCCCCCCCCEE--EEEECC------CHH-HHHHHCCCCHHCCCCCEEEE
Q ss_conf 34575544674036--642013------213-44320121000485211776
Q gi|254780624|r 133 TLPFEANSFDACTL--AFGIRN------MPH-ITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 133 ~lp~~d~sfD~V~~--sf~l~~------~~d-~~~~l~e~~RvLKpGG~~~i 175 (265)
T Consensus 257 ~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf 308 (347)
T COG1041 257 NLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVF 308 (347)
T ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 2778877423588469987100245552899999999999987304848999