HHsearch alignment for GI: 254780624 and conserved domain: COG1352

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].
Probab=98.48  E-value=3.3e-07  Score=66.61  Aligned_cols=120  Identities=22%  Similarity=0.274  Sum_probs=79.3

Q ss_pred             HHHHHHHHCC-CCCCCCEEEECCHHHH----HHHHHHHHHCCC----CCEEEEECCCCCCCCCCCCCHHC-----C----
Q ss_conf             9999852064-4679977986023355----777776641388----63278721332222111100000-----1----
Q gi|254780624|r   57 KEAMVTNLNP-RKSKDYRVLDVAGGTG----DVAFRIAEASDN----RSQIVVADINNEMLSVGRDRAFK-----E----  118 (265)
Q Consensus        57 r~~~i~~l~~-~~~~~~~iLDiGcGTG----~~~~~l~~~~~~----~~~v~giD~s~~Ml~~a~~r~~~-----~----  118 (265)
T Consensus        82 ~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~  161 (268)
T COG1352          82 RDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPP  161 (268)
T ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCCCHHHHHCCCCH
T ss_conf             99987998730469853999667689955899999999873322587438999979999999986288876676544998


Q ss_pred             -------------------CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC--HHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf             -------------------12222222222233345755446740366420132--13443201210004852117763
Q gi|254780624|r  119 -------------------NLQDCITFIEANAETLPFEANSFDACTLAFGIRNM--PHITLVLQEIYRILKCGGRLLVL  176 (265)
Q Consensus       119 -------------------~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~--~d~~~~l~e~~RvLKpGG~~~i~  176 (265)
T Consensus       162 ~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG  240 (268)
T COG1352         162 ELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG  240 (268)
T ss_pred             HHHHHHEEECCCCCEEECHHHHCCCEEEECCCCCCCCCCCCCCEEEECCEEEEECHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             9996337646998479876876243775357888754358988899841488637899999999999974899789982