HHsearch alignment for GI: 254780624 and conserved domain: COG1352
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].
Probab=98.48 E-value=3.3e-07 Score=66.61 Aligned_cols=120 Identities=22% Similarity=0.274 Sum_probs=79.3
Q ss_pred HHHHHHHHCC-CCCCCCEEEECCHHHH----HHHHHHHHHCCC----CCEEEEECCCCCCCCCCCCCHHC-----C----
Q ss_conf 9999852064-4679977986023355----777776641388----63278721332222111100000-----1----
Q gi|254780624|r 57 KEAMVTNLNP-RKSKDYRVLDVAGGTG----DVAFRIAEASDN----RSQIVVADINNEMLSVGRDRAFK-----E---- 118 (265)
Q Consensus 57 r~~~i~~l~~-~~~~~~~iLDiGcGTG----~~~~~l~~~~~~----~~~v~giD~s~~Ml~~a~~r~~~-----~---- 118 (265)
T Consensus 82 ~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~ 161 (268)
T COG1352 82 RDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPP 161 (268)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCCCHHHHHCCCCH
T ss_conf 99987998730469853999667689955899999999873322587438999979999999986288876676544998
Q ss_pred -------------------CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC--HHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf -------------------12222222222233345755446740366420132--13443201210004852117763
Q gi|254780624|r 119 -------------------NLQDCITFIEANAETLPFEANSFDACTLAFGIRNM--PHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 119 -------------------~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~--~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
T Consensus 162 ~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 162 ELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred HHHHHHEEECCCCCEEECHHHHCCCEEEECCCCCCCCCCCCCCEEEECCEEEEECHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 9996337646998479876876243775357888754358988899841488637899999999999974899789982