HHsearch alignment for GI: 254780624 and conserved domain: PRK03522

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed.
Probab=98.38  E-value=2.7e-07  Score=67.17  Aligned_cols=81  Identities=12%  Similarity=0.165  Sum_probs=61.2

Q ss_pred             HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC-CC
Q ss_conf             99852064467997798602335577777664138863278721332222111100000112222222222233345-75
Q gi|254780624|r   59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP-FE  137 (265)
Q Consensus        59 ~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp-~~  137 (265)
T Consensus       224 ~~~~~~~~~~--~~~vlDlycG~G~~sl~lA~~~---~~V~gvE~~~~av~~A~~na~~ngi-~nv~f~~~d~~~~~~~~  297 (375)
T PRK03522        224 TARDWVRELP--PKSMWDLFCGVGGFGLHCATPD---MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQ  297 (375)
T ss_pred             HHHHHHHCCC--CCEEEEECCCCCHHHHHHHHCC---CEEEEEEECHHHHHHHHHHHHHCCC-CCEEEEECCHHHHHHHC
T ss_conf             9999863158--9789996578538889876417---8899998459999999999998699-87699973778887634


Q ss_pred             CCCCCCCE
Q ss_conf             54467403
Q gi|254780624|r  138 ANSFDACT  145 (265)
Q Consensus       138 d~sfD~V~  145 (265)
T Consensus       298 ~~~~d~vv  305 (375)
T PRK03522        298 GEVPELVL  305 (375)
T ss_pred             CCCCCEEE
T ss_conf             56897899