HHsearch alignment for GI: 254780624 and conserved domain: PRK11088
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional.
Probab=99.62 E-value=9.1e-16 Score=121.75 Aligned_cols=107 Identities=26% Similarity=0.392 Sum_probs=81.3
Q ss_pred HHHHHHHCCC-CCCCCEEEECCHHHHHHHHHHHHHCCC--CCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC
Q ss_conf 9998520644-679977986023355777776641388--6327872133222211110000011222222222223334
Q gi|254780624|r 58 EAMVTNLNPR-KSKDYRVLDVAGGTGDVAFRIAEASDN--RSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL 134 (265)
Q Consensus 58 ~~~i~~l~~~-~~~~~~iLDiGcGTG~~~~~l~~~~~~--~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l 134 (265)
T Consensus 72 ~~i~~~~~~~~~~~~~~ilD~GCGEGyYl~~l~~~l~~~~~~~~~G~DiSK~ai~~Aak~------~~~~~~~Va~~~~l 145 (272)
T PRK11088 72 DAVANLLAERLDEKATAILDIGCGEGYYTHALADALPEVTTCQLFGLDISKVAIKYAAKR------YPQVTFCVASSHRL 145 (272)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHCC------CCCCEEEEEECCCC
T ss_conf 999999997567778648881587778999999974115787379981179999999626------88854999610018
Q ss_pred CCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEE
Q ss_conf 5755446740366420132134432012100048521177630
Q gi|254780624|r 135 PFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLE 177 (265)
Q Consensus 135 p~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~d 177 (265)
T Consensus 146 P~~d~s~D~vl~vFsP~-------~~~Ef~RvLkp~G~li~V~ 181 (272)
T PRK11088 146 PFADQSLDAIIRIYAPC-------KAEELARVVKPGGIVITVT 181 (272)
T ss_pred CCCCCCCEEEEEEECCC-------CHHHHHHEECCCCEEEEEE
T ss_conf 88766540899984378-------8588612463797899997