HHsearch alignment for GI: 254780624 and conserved domain: PRK13168

>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed.
Probab=98.15  E-value=1.3e-06  Score=62.78  Aligned_cols=81  Identities=26%  Similarity=0.407  Sum_probs=61.7

Q ss_pred             HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC-CC--
Q ss_conf             998520644679977986023355777776641388632787213322221111000001122222222222333-45--
Q gi|254780624|r   59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET-LP--  135 (265)
Q Consensus        59 ~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~-lp--  135 (265)
T Consensus       285 ~a~~~l~~~~--~~~VlDLYcGvGtfsl~LA~~~---~~V~gvE~~~~av~~A~~Na~~n~i-~n~~f~~~d~~~~l~~~  358 (440)
T PRK13168        285 RALEWLDPQP--GDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVPAMVERARENARRNGL-DNVTFYHANLFEDFTDQ  358 (440)
T ss_pred             HHHHHHCCCC--CCEEEEEECCCCCCCHHHHHCC---CEEEEEECCHHHHHHHHHHHHHCCC-CCCEEEECCHHHHHHHH
T ss_conf             9999852678--9889986238562111135306---7688760579999999999997499-98789974645663557


Q ss_pred             -CCCCCCCCCE
Q ss_conf             -7554467403
Q gi|254780624|r  136 -FEANSFDACT  145 (265)
Q Consensus       136 -~~d~sfD~V~  145 (265)
T Consensus       359 ~~~~~~~D~vi  369 (440)
T PRK13168        359 PWAKGGFDKVL  369 (440)
T ss_pred             HHHCCCCCEEE
T ss_conf             86379999899