HHsearch alignment for GI: 254780624 and conserved domain: PRK13168
>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed.
Probab=98.15 E-value=1.3e-06 Score=62.78 Aligned_cols=81 Identities=26% Similarity=0.407 Sum_probs=61.7
Q ss_pred HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC-CC--
Q ss_conf 998520644679977986023355777776641388632787213322221111000001122222222222333-45--
Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET-LP-- 135 (265)
Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~-lp-- 135 (265)
T Consensus 285 ~a~~~l~~~~--~~~VlDLYcGvGtfsl~LA~~~---~~V~gvE~~~~av~~A~~Na~~n~i-~n~~f~~~d~~~~l~~~ 358 (440)
T PRK13168 285 RALEWLDPQP--GDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVPAMVERARENARRNGL-DNVTFYHANLFEDFTDQ 358 (440)
T ss_pred HHHHHHCCCC--CCEEEEEECCCCCCCHHHHHCC---CEEEEEECCHHHHHHHHHHHHHCCC-CCCEEEECCHHHHHHHH
T ss_conf 9999852678--9889986238562111135306---7688760579999999999997499-98789974645663557
Q ss_pred -CCCCCCCCCE
Q ss_conf -7554467403
Q gi|254780624|r 136 -FEANSFDACT 145 (265)
Q Consensus 136 -~~d~sfD~V~ 145 (265)
T Consensus 359 ~~~~~~~D~vi 369 (440)
T PRK13168 359 PWAKGGFDKVL 369 (440)
T ss_pred HHHCCCCCEEE
T ss_conf 86379999899