HHsearch alignment for GI: 254780624 and conserved domain: TIGR00417
>TIGR00417 speE spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (), spermine synthase () and putrescine N-methyltransferase () . The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain . The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) . ; GO: 0003824 catalytic activity.
Probab=98.17 E-value=1.7e-06 Score=62.08 Aligned_cols=157 Identities=14% Similarity=0.223 Sum_probs=107.5
Q ss_pred HHHHHHHCC-CCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHC----CCCCCCCCCCCCCCC
Q ss_conf 999852064-467997798602335577777664138863278721332222111100000----112222222222233
Q gi|254780624|r 58 EAMVTNLNP-RKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFK----ENLQDCITFIEANAE 132 (265)
Q Consensus 58 ~~~i~~l~~-~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~----~~~~~~i~~~~~da~ 132 (265)
T Consensus 62 hEMi~HvpL~~H~NPk~VLvIGGGDGG~lREV~KH~-sVE~~~lVdID~~VI~~srkyLP~~~~g~~dderv~~~i~DG~ 140 (284)
T TIGR00417 62 HEMIAHVPLFAHPNPKKVLVIGGGDGGVLREVVKHK-SVEKATLVDIDEKVIELSRKYLPKLAAGSFDDERVDLAIDDGF 140 (284)
T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEECC-CCCEEEEEECCHHHHHHHHHHCHHHHCCCCCCCEEEEEECCCH
T ss_conf 789987565368988547899638884687887559-8167999972747899988826121056658880358982517
Q ss_pred C-CCCC-----CCCCCCCEEEEEECCCHHH---------HHHHCCCCHHCCCCCEEEEEECCC-CCCCHHHHHHHHHHHC
Q ss_conf 3-4575-----5446740366420132134---------432012100048521177630554-4551011234565311
Q gi|254780624|r 133 T-LPFE-----ANSFDACTLAFGIRNMPHI---------TLVLQEIYRILKCGGRLLVLEFSE-VQGPVFKKIYDMWSFK 196 (265)
Q Consensus 133 ~-lp~~-----d~sfD~V~~sf~l~~~~d~---------~~~l~e~~RvLKpGG~~~i~df~~-p~~~~~~~~~~~y~~~ 196 (265)
T Consensus 141 ~fl~~~Gasdv~~~fDVIIv-D----stDPvGPa~~LF~~~Fy~~~~~aL~~~Gv~v~----Qss~s~~~~~~~------ 205 (284)
T TIGR00417 141 KFLRDTGASDVEKKFDVIIV-D----STDPVGPAETLFTKEFYELLKKALNEDGVIVA----QSSESPWLQLEL------ 205 (284)
T ss_pred HHHHHCCCCCCCCCCCEEEE-E----CCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE----ECCCCCCCCHHH------
T ss_conf 98976152222121447997-2----77895655410217999999985299988998----027884327488------
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEE-----ECCCCEEEEEEEEEE
Q ss_conf 13321025428876865789999968998999999997599537999-----855664999999811
Q gi|254780624|r 197 VIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFT-----NYTNGVVALHSGWKC 258 (265)
Q Consensus 197 iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~-----~~~~Gi~~i~~g~Kp 258 (265)
T Consensus 206 ----------------------------~~d~~r~~~~~~F~~~~~y~~~iPTYp~G~~~F~~~s~~ 244 (284)
T TIGR00417 206 ----------------------------IKDLKRKVKEVPFPITEYYTAAIPTYPSGLWSFIIASKN 244 (284)
T ss_pred ----------------------------HHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCC
T ss_conf ----------------------------887888775268975304664078650235453220242