HHsearch alignment for GI: 254780624 and conserved domain: TIGR00478
>TIGR00478 tly hemolysin A; InterPro: IPR004538 Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture. The mechanism of action is not well defined. Hemolysin A is induced by sodium ribonucleate, and is produced by pathogenic bacterial strains. Hemolysin A from Treponema hyodysenteriae causes swine dysentry.; GO: 0003723 RNA binding, 0019836 hemolysis by symbiont of host red blood cells.
Probab=96.15 E-value=0.0076 Score=38.50 Aligned_cols=126 Identities=17% Similarity=0.219 Sum_probs=76.8
Q ss_pred HHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCC--CCCC
Q ss_conf 76148017999999852064467997798602335577777664138863278721332222111100000112--2222
Q gi|254780624|r 47 LMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENL--QDCI 124 (265)
Q Consensus 47 ~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~--~~~i 124 (265)
T Consensus 57 fVSRGG~KL--~~~L~~F~~~vk-~ki~lD~GsS~GGFtd~aL~~GA--k~VY~vDVG~~ql~~kLR~D~Rv~~~eR~N~ 131 (240)
T TIGR00478 57 FVSRGGEKL--KEALEEFEVDVK-NKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNI 131 (240)
T ss_pred EECCHHHHH--HHHCCCCCEEEC-CEEEEEECCCCCHHHHHHHHCCC--CEEEEEEECCHHHHHHCCCCCEEEEEECCCC
T ss_conf 005045899--985354331337-86899705673048999987058--4677786032133432363662689645787
Q ss_pred C--CCCCCCC-CCCCCC-CCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHH
Q ss_conf 2--2222233-345755-4467403664201321344320121000485211776305544551011
Q gi|254780624|r 125 T--FIEANAE-TLPFEA-NSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFK 187 (265)
Q Consensus 125 ~--~~~~da~-~lp~~d-~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~ 187 (265)
T Consensus 132 rGy~T~~d~~~~qP~P~lA~~Dv---SF-----iSl~~il~~L~~lL~P~~~~~~--L~kPqFe~~R 188 (240)
T TIGR00478 132 RGYVTPADIVKDQPMPDLAVVDV---SF-----ISLISILPELLLLLNPDNDLLL--LVKPQFEVGR 188 (240)
T ss_pred CCCCCHHHHHCCCCCCCHHHHHH---HH-----HHHHHHHHHHHHHHCCCCEEEE--EECCCCEEEE
T ss_conf 44466565407888973144445---78-----8799999988875088960788--5077523330