HHsearch alignment for GI: 254780624 and conserved domain: TIGR00536
>TIGR00536 hemK_fam methyltransferase, HemK family; InterPro: IPR004556 The gene hemK from Escherichia coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase . Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity . Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both Escherichia coli and Haemophilus influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=96.14 E-value=0.0043 Score=40.11 Aligned_cols=87 Identities=17% Similarity=0.306 Sum_probs=64.3
Q ss_pred HHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC-CCCC
Q ss_conf 9852064467997798602335577777664138-8632787213322221111000001122222222222333-4575
Q gi|254780624|r 60 MVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASD-NRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET-LPFE 137 (265)
Q Consensus 60 ~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~-~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~-lp~~ 137 (265)
T Consensus 116 ~~~~~~~~~~~p~~~~d~~~g~g~~~~~~~~~~~pc~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (311)
T TIGR00536 116 ALASLLSQPPLPLHILDLGTGSGCIALALAYEFPPCNAEVIAVDLSPDALALAEENAEKLGLEGRVELLQSDLLEPLPGL 195 (311)
T ss_pred HHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHC
T ss_conf 88754114776501110145631566655430466662266411223678888876776432012001011244433203
Q ss_pred CC-CCCCCEE
Q ss_conf 54-4674036
Q gi|254780624|r 138 AN-SFDACTL 146 (265)
Q Consensus 138 d~-sfD~V~~ 146 (265)
T Consensus 196 ~~p~~~~~~~ 205 (311)
T TIGR00536 196 GGPKLDLLVS 205 (311)
T ss_pred CCCCEEEEEC
T ss_conf 6652236645