HHsearch alignment for GI: 254780624 and conserved domain: TIGR01177

>TIGR01177 TIGR01177 conserved hypothetical protein TIGR01177; InterPro: IPR005885 This family of largely hypothetical proteins is found exclusively in the Archaea and contain a putative RNA methylase domain..

Probab=96.12  E-value=0.0059  Score=39.20  Aligned_cols=119  Identities=22%  Similarity=0.288  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEE-CCCCCCCCCCCCCHHCCCCCC-CCCCCCCCC
Q ss_conf             799999985206446799779860233557777766413886327872-133222211110000011222-222222223
Q gi|254780624|r   54 RFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVA-DINNEMLSVGRDRAFKENLQD-CITFIEANA  131 (265)
Q Consensus        54 r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~gi-D~s~~Ml~~a~~r~~~~~~~~-~i~~~~~da  131 (265)
T Consensus       189 p~~~~~~~~~~~~~~g--~~~~dp~~g~gg~~~~~gl~---g~~~~g~gd~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~  263 (358)
T TIGR01177       189 PKLARALVNLAGVKEG--DRLLDPFCGTGGFLIEAGLL---GAKPIGCGDLDWKLVEGARLNLEHYGIEDKVFSVKRGDA  263 (358)
T ss_pred             HHHHHHHHHHHHCCCC--CCEECCCCCCCCHHHHHHHH---CCCCCCCCHHHHHHHCCCHHHHHHCCCCCCEEEEEECCC
T ss_conf             4677777654202467--51004222666033233332---110002440356764252111333055431567640330


Q ss_pred             CCCCCC--C--CCCCCCEEE--EEECC------C-HHHHHHHCCCCHHCCCCCEEEEEE
Q ss_conf             334575--5--446740366--42013------2-134432012100048521177630
Q gi|254780624|r  132 ETLPFE--A--NSFDACTLA--FGIRN------M-PHITLVLQEIYRILKCGGRLLVLE  177 (265)
Q Consensus       132 ~~lp~~--d--~sfD~V~~s--f~l~~------~-~d~~~~l~e~~RvLKpGG~~~i~d  177 (265)
T Consensus       264 ~~~~~~~~~~~~~~~~~~~d~p~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~  322 (358)
T TIGR01177       264 KDLPLRLPGLDESVDAIATDPPYGRSTTAAGDGLEELYEKSLEELHEVLKGGGWLAVAV  322 (358)
T ss_pred             HHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             01110035310112222125654531112210368888888888888642687179974