HHsearch alignment for GI: 254780624 and conserved domain: TIGR02085
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB; InterPro: IPR011825 This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA .; GO: 0016436 rRNA (uridine) methyltransferase activity, 0016070 RNA metabolic process.
Probab=94.28 E-value=0.01 Score=37.69 Aligned_cols=61 Identities=18% Similarity=0.316 Sum_probs=49.8
Q ss_pred EEEECCHHHHHHHHHHH----HHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC
Q ss_conf 79860233557777766----413886327872133222211110000011222222222223334
Q gi|254780624|r 73 RVLDVAGGTGDVAFRIA----EASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL 134 (265)
Q Consensus 73 ~iLDiGcGTG~~~~~l~----~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l 134 (265)
T Consensus 240 ~mWDLFCGVGGFgLHCAkalqekw~p~~~lTGIEI~~eAIa~A~~SA~~lGl-~~~~F~aLDsa~f 304 (386)
T TIGR02085 240 QMWDLFCGVGGFGLHCAKALQEKWGPDTQLTGIEIESEAIACAKQSAKILGL-ENLSFAALDSAKF 304 (386)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHHHHCH-HHHHHHHHHHHHH
T ss_conf 0320104654127899898764158970443134377899999999987353-3210454457999