HHsearch alignment for GI: 254780624 and conserved domain: TIGR02143

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase; InterPro: IPR011869 This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of this entry belong to the Proteobacteria. ; GO: 0009021 tRNA (uracil-5-)-methyltransferase activity, 0008033 tRNA processing.
Probab=96.37  E-value=0.00071  Score=45.15  Aligned_cols=59  Identities=15%  Similarity=0.372  Sum_probs=52.7

Q ss_pred             EEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             798602335577777664138863278721332222111100000112222222222233345
Q gi|254780624|r   73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP  135 (265)
Q Consensus        73 ~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp  135 (265)
T Consensus       206 DLLELYCGNGNFsLaLA~~f~---rVLATEiaK~SV~aAq~Ni~~N~i-dNv~i~RlSAEEft  264 (361)
T TIGR02143       206 DLLELYCGNGNFSLALAQNFE---RVLATEIAKPSVNAAQYNIAANKI-DNVQIIRLSAEEFT  264 (361)
T ss_pred             CCCEEECCCCCCHHHHHHHHH---HHHHHHCCCCCHHHHHHHHHCCCC-CCEEHHHHHHHHHH
T ss_conf             201000267531044565333---455430240247999999871798-83101023279999