HHsearch alignment for GI: 254780624 and conserved domain: pfam01728
>pfam01728 FtsJ FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.
Probab=98.16 E-value=3.1e-06 Score=60.39 Aligned_cols=93 Identities=17% Similarity=0.258 Sum_probs=61.4
Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC-------CCCCCCCC
Q ss_conf 97798602335577777664138863278721332222111100000112222222222233345-------75544674
Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP-------FEANSFDA 143 (265)
Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp-------~~d~sfD~ 143 (265)
T Consensus 22 ~~~vlDLg~aPGgwsq~~~~~~-~~~~v~~vDl~~~-~-----------~~~~~~~i~gDi~~~~~~~~i~~~~~~~~Dl 88 (176)
T pfam01728 22 GKTVLDLGAAPGGFSQVLLERG-AKGRVVAVDLGPM-K-----------PIQGVTFLRGDITDPETLEKLLELLPGKVDL 88 (176)
T ss_pred CCEEEEECCCCCHHHHHHHHHC-CCCEEEEEECCCC-C-----------CCCCCEEECCCCCCHHHHHHHHHHCCCCCCE
T ss_conf 9999996899976999999856-6873999973446-5-----------6778456516766878999999973998468
Q ss_pred CEEEEE-----ECCCHH------HHHHHCCCCHHCCCCCEEEEE
Q ss_conf 036642-----013213------443201210004852117763
Q gi|254780624|r 144 CTLAFG-----IRNMPH------ITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 144 V~~sf~-----l~~~~d------~~~~l~e~~RvLKpGG~~~i~ 176 (265)
T Consensus 89 V~sD~a~~~~g~~~~d~~~s~~L~~~~l~~a~~~L~~gG~fv~K 132 (176)
T pfam01728 89 VLCDGAPNVSGLENTDSFISLRLVLAALLLALEVLRPGGNFVVK 132 (176)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 97336656567733478999999999999999982437639999