HHsearch alignment for GI: 254780624 and conserved domain: pfam02384
>pfam02384 N6_Mtase N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
Probab=98.58 E-value=5.2e-08 Score=71.79 Aligned_cols=121 Identities=20% Similarity=0.247 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCC------CCCEEEEECCCCCCCCCCCCCHHCCCCC-CCCCC
Q ss_conf 7999999852064467997798602335577777664138------8632787213322221111000001122-22222
Q gi|254780624|r 54 RFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASD------NRSQIVVADINNEMLSVGRDRAFKENLQ-DCITF 126 (265)
Q Consensus 54 r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~------~~~~v~giD~s~~Ml~~a~~r~~~~~~~-~~i~~ 126 (265)
T Consensus 32 r~Vv~lmv~ll~p~~~~--~V~DPacGtGgfLi~a~~~i~~~~~~~~~~~i~G~E~~~~~~~la~mNm~lhgi~~~~~~i 109 (312)
T pfam02384 32 REVSKLIVELLEPKPGE--SIYDPACGSGGFLIQADKFVKSHDGDTNDISIYGQELNPTTYRLARMNMILHGIEYNDFGI 109 (312)
T ss_pred HHHHHHHHHHHCCCCCC--EEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 89999999982899999--8821687733789999999998437855655636889989999999999984798874552
Q ss_pred CCCCCCCCCC--CCCCCCCCEE--EEEECCCHH-------------------H-HHHHCCCCHHCCCCCEEEEE
Q ss_conf 2222333457--5544674036--642013213-------------------4-43201210004852117763
Q gi|254780624|r 127 IEANAETLPF--EANSFDACTL--AFGIRNMPH-------------------I-TLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 127 ~~~da~~lp~--~d~sfD~V~~--sf~l~~~~d-------------------~-~~~l~e~~RvLKpGG~~~i~ 176 (265)
T Consensus 110 ~~gdsl~~~~~~~~~kfD~IlsNPPFg~k~~~~~~~~~~~~~~~~~~~~~~~~e~~Fiqh~l~~Lk~~GraaiV 183 (312)
T pfam02384 110 RHGDTLLSPKFEEDKKFDVVVANPPFNQKWDANDNLENDPRFRAYGVPPKSNADFAFLQHIIYHLSPNGRAAVV 183 (312)
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 14776557676654551189837864667665432102721103687888744299999999856999769999