HHsearch alignment for GI: 254780624 and conserved domain: pfam03059
>pfam03059 NAS Nicotianamine synthase protein. Nicotianamine synthase EC:2.5.1.43 catalyses the trimerisation of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is great
Probab=97.63 E-value=5.9e-05 Score=52.11 Aligned_cols=150 Identities=15% Similarity=0.144 Sum_probs=103.8
Q ss_pred CCCEEEECCHHHHHHH-HHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 9977986023355777-7766413886327872133222211110000011-2222222222233345755446740366
Q gi|254780624|r 70 KDYRVLDVAGGTGDVA-FRIAEASDNRSQIVVADINNEMLSVGRDRAFKEN-LQDCITFIEANAETLPFEANSFDACTLA 147 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~-~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~-~~~~i~~~~~da~~lp~~d~sfD~V~~s 147 (265)
T Consensus 121 ~p~~vAFIGSGPLPLTsivLa~~h~~~~~~~niD~d~~A~~~A~~lv~~~g~ls~~m~f~t~d~~~~~~~l~~~DvV~lA 200 (277)
T pfam03059 121 VPSRIAFIGSGPLPLTSIVLASYHLPDTSFDNYDIDGLANDRASKLVSSDPDLSSRMSFHTADVLDVTTELKAYDVVFLA 200 (277)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCHHCCEEEEECCCCCCCCCCCCCCEEEEH
T ss_conf 97448996378861389999885088731433127889999999999865530047289952644444444547689872
Q ss_pred EEEC--CCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCH
Q ss_conf 4201--32134432012100048521177630554455101123456531113321025428876865789999968998
Q gi|254780624|r 148 FGIR--NMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQ 225 (265)
Q Consensus 148 f~l~--~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~ 225 (265)
T Consensus 201 -ALVGm~~e~K~~I~~hL~k~m~~Ga~l~~R-----sa~GlR~~L--Y-----p~----------------------vd~ 245 (277)
T pfam03059 201 -ALVGMDKEEKAKVIDHLGKHMAPGALLVLR-----SAHGARAFL--Y-----PV----------------------VDP 245 (277)
T ss_pred -HHCCCCHHHHHHHHHHHHHHCCCCCEEEEE-----CCHHHHHHC--C-----CC----------------------CCH
T ss_conf -113543335999999999745899679996-----112178762--8-----87----------------------896
Q ss_pred HHHHHHHHHCCCCEEEEEECCCC-EEEEEEEEEECC
Q ss_conf 99999999759953799985566-499999981164
Q gi|254780624|r 226 QDFAAVISAAGFSNVSFTNYTNG-VVALHSGWKCEN 260 (265)
Q Consensus 226 ~el~~~l~~aGF~~v~~~~~~~G-i~~i~~g~Kp~~ 260 (265)
T Consensus 246 ~~------~~GFe~l~~~hP~~~ViNSvI~~rk~~~ 275 (277)
T pfam03059 246 CD------LRGFEVLSVYHPTDEVINSVIVARKKIV 275 (277)
T ss_pred HH------CCCCEEEEEECCCCCCEEEEEEEECCCC
T ss_conf 67------3870799998899984113899833777