HHsearch alignment for GI: 254780624 and conserved domain: pfam05175
>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=99.60 E-value=7.7e-16 Score=122.24 Aligned_cols=114 Identities=21% Similarity=0.267 Sum_probs=90.0
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334575
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265)
T Consensus 21 ~lLl~~l~~~~~--g~vLDlGcG~G~i~~~la~~~-p~~~v~~vDi~~~Al~~a~~N~~~n~l-~~v~v~~~D~~~-~~~ 95 (170)
T pfam05175 21 RLLLSHLPKPLG--GKVLDLGCGYGVLGAALAKRS-PDLEVTMVDINARALESARANLAANGL-ENGEVFWSDLYS-AVE 95 (170)
T ss_pred HHHHHCCCCCCC--CCEEEECCCCCHHHHHHHHHC-CCCEEEECHHHHHHHHHHHHHHHHHCC-CEEEEEECCCCC-CCC
T ss_conf 999970897789--949997764829899999978-986798515449999999999998099-848999744666-577
Q ss_pred CCCCCCCEEE--EEEC---CCHHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 5446740366--4201---3213443201210004852117763
Q gi|254780624|r 138 ANSFDACTLA--FGIR---NMPHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 138 d~sfD~V~~s--f~l~---~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
T Consensus 96 ~~~fD~IvsNPP~h~g~~~~~~~~~~~i~~A~~~L~pgG~l~~V 139 (170)
T pfam05175 96 PGKFDLIISNPPFHAGKATDYDVAQRFIAGAARHLKPGGELWIV 139 (170)
T ss_pred CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 88660899897721142032899999999999961649799999