>pfam06859 Bin3 Bicoid-interacting protein 3 (Bin3). This family represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation. Note that family members contain a conserved HLN motif.

Probab=93.22 E-value=0.14 Score=30.38 Aligned_cols=85 Identities=26% Similarity=0.479 Sum_probs=48.5 Q ss_pred CCCCCEEEEEEC-----CCHH--HHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHH Q ss_conf 467403664201-----3213--443201210004852117763055445510112345653111332102542887686 Q gi|254780624|r 140 SFDACTLAFGIR-----NMPH--ITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPY 212 (265) Q Consensus 140 sfD~V~~sf~l~-----~~~d--~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y 212 (265) T Consensus 1 ~fD~i~c-lSvtkWIHLN~GD~Gl~~~f~~~~~~l~pgg~lil-E---pQ~------w~sY~k~k--kl~~~~---~~ny 64 (110) T pfam06859 1 EFDVILC-LSVTKWVHLNWGDEGLKRFFRRIYRLLRPGGILIL-E---PQP------WDSYKKRK--KLSETI---YKNY 64 (110) T ss_pred CCCEEEE-EEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE-E---CCC------CHHHHHHH--HCCHHH---HHHH T ss_conf 9658999-66202455546428899999999996188988999-6---788------46688773--147999---8535 Q ss_pred HHHHHHHHHCCCHHHHHHHHH--HCCCCEEEEEECC Q ss_conf 578999996899899999999--7599537999855 Q gi|254780624|r 213 QYLIESIRRFPNQQDFAAVIS--AAGFSNVSFTNYT 246 (265) Q Consensus 213 ~yL~~Si~~f~~~~el~~~l~--~aGF~~v~~~~~~ 246 (265) T Consensus 65 ----~~I~--~rPd~F~~yLl~~evGF~s~e~~~~~ 94 (110) T pfam06859 65 ----ERIK--LKPDQFEEYLLSPEVGFSSYELVGVP 94 (110) T ss_pred ----HHHE--ECHHHHHHHHHCCCCCEEEEEEECCC T ss_conf ----5427--78788899980546680789994378

HHsearch alignment for GI: 254780624 and conserved domain: pfam06859