HHsearch alignment for GI: 254780624 and conserved domain: pfam07021
>pfam07021 MetW Methionine biosynthesis protein MetW. This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells.
Probab=99.71 E-value=4.4e-18 Score=136.67 Aligned_cols=155 Identities=21% Similarity=0.280 Sum_probs=111.5
Q ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC--CCCCCCCCCCCEE
Q ss_conf 79977986023355777776641388632787213322221111000001122222222222333--4575544674036
Q gi|254780624|r 69 SKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET--LPFEANSFDACTL 146 (265)
Q Consensus 69 ~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~--lp~~d~sfD~V~~ 146 (265)
T Consensus 12 ~~~srVLDlGCG~G~ll~~L~~~--k~v~~~GvEid~~~v~~a~~k--------g~~Vi~~D~d~~l~~f~d~sFD~VIl 81 (193)
T pfam07021 12 PPGSRVLDLGCGDGSLLYLLQEE--KQVDGRGIELDAAGVAECVAK--------GLSVIQGDADKGLEHFPDKSFDYVIL 81 (193)
T ss_pred CCCCEEEEECCCCCHHHHHHHHC--CCCCEEEECCCHHHHHHHHHC--------CCCEECCCHHHCHHHCCCCCCCEEEH
T ss_conf 89698998368898999999876--698769833899999999864--------79545077445974577678037869
Q ss_pred EEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 64201321344320121000485211776305544551011234565311133210254288768657899999689989
Q gi|254780624|r 147 AFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQ 226 (265)
Q Consensus 147 sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~ 226 (265)
T Consensus 82 s~vLqhl~~P~~vL~EmlRV---gk~~IV---SfPNf~hw~~R~~ll~~------GrmPvt~~lp~~WydTpnih~~Ti~ 149 (193)
T pfam07021 82 SQTLQATRNPREVLDELLRI---GRRAIV---SFPNFGHWRVRWSLLSR------GRMPVTDLLPYTWYDTPNIHFCTIR 149 (193)
T ss_pred HHHHHHHCCCHHHHHHHHHH---CCEEEE---EECCHHHHHHHHHHHHC------CCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 87998752819999998512---686999---94361479999999947------8755589999761489984744599
Q ss_pred HHHHHHHHCCCCEEEEEEC
Q ss_conf 9999999759953799985
Q gi|254780624|r 227 DFAAVISAAGFSNVSFTNY 245 (265)
Q Consensus 227 el~~~l~~aGF~~v~~~~~ 245 (265)
T Consensus 150 DFe~lc~~~~i~I~~~~~l 168 (193)
T pfam07021 150 DFEELCEELNLKVEDRAAL 168 (193)
T ss_pred HHHHHHHHCCCEEEEEEEE
T ss_conf 9999999889989999997