HHsearch alignment for GI: 254780625 and conserved domain: COG0266

>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair].
Probab=100.00  E-value=0  Score=578.00  Aligned_cols=273  Identities=47%  Similarity=0.804  Sum_probs=261.2

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCEE
Q ss_conf             96764367889889998679778899964833265787789997289889999605308999503553100152553279
Q gi|254780625|r    1 MPELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLIELEGNLSIIVHLGMSGSF   80 (289)
Q Consensus         1 MPElPEVe~~~~~l~~~l~g~~I~~V~~~~~~~~~~~~~~~~~~L~G~~I~~v~r~GK~l~l~l~~~~~L~~HlgM~G~~   80 (289)
T Consensus         1 MPELPEVetv~rgL~~~~~G~~I~~v~v~~p~l~~~~~~~~~~~L~G~~I~~v~rRgKyLl~~l~g~~~Li~HLgM~G~~   80 (273)
T COG0266           1 MPELPEVETVRRGLEPHLVGKTITRVEVRRPRLRWPDSEEFAERLTGQRITSVERRGKYLLIELSGDLTLISHLGMSGSL   80 (273)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCEECCCCHHHHHHCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCEEE
T ss_conf             99874779898766887579878899953875113677778965589698367512125999917994899966764689


Q ss_pred             EEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEECCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             98147854224587663389997068876048999815876641001455301005323565553322111067888742
Q gi|254780625|r   81 IIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQF  160 (289)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG~~~~~~~~~~~~~~~l~~lGpD~l~~~~~~~~~~~~l  160 (289)
T Consensus        81 ~~~~~~~~----~~kH~hv~~~~~~g~----~~l~y~D~R~FG~~~~~~~~~-~~~~~l~~LGpePl~~~f~~~~l~~~l  151 (273)
T COG0266          81 RLEARGEP----DEKHDHVDFVLSDGK----DVLRYNDPRRFGTMLLIEDLE-EVHPVLAKLGPEPLSDDFDPEYLAEKL  151 (273)
T ss_pred             EEECCCCC----CCCCEEEEEEECCCC----EEEEEECCCCCCEEEEECCCC-CCCHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf             98517888----886308999975993----599986387674899945665-432779865999885436999999987


Q ss_pred             HCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             01454210011126543564136899999987178778312222001015899999999878876765421887553111
Q gi|254780625|r  161 HKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYV  240 (289)
Q Consensus       161 ~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~~vl~~a~~~gG~~~~~~~  240 (289)
T Consensus       152 ~~~~~~IK~~LLDQ~vvaGvGNIYa~E~Lf~agI~P~~~a~~l~~~~------~~~l~~~i~~vl~~ai~~gGtt~r~~~  225 (273)
T COG0266         152 AKKKRRIKTALLDQKVVAGVGNIYADEILFRAGIHPARPAGDLSLAQ------LALLHEAIKDVLADAIERGGTTLRDFV  225 (273)
T ss_pred             HCCCCCHHHHHHCCCCEECCCHHHHHHHHHHCCCCCCCCCCCCCHHH------HHHHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf             32764167776407703034178888899873798546703027899------999999999999999981898024324


Q ss_pred             CCCCCCCCCHHHEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCC
Q ss_conf             6778778741331665738771078778878999987812063877679
Q gi|254780625|r  241 HIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK  289 (289)
Q Consensus       241 ~~~g~~g~~~~~~~vy~r~g~~C~~~CG~~I~~~~~~gR~ty~Cp~CQk  289 (289)
T Consensus       226 ~~~g~~G~fq~~l~VYgR~GepC-~~CGt~I~k~~~~gR~t~~CP~CQ~  273 (273)
T COG0266         226 NADGKPGYFQQELKVYGRAGEPC-RRCGTPIEKIKLGGRSTFYCPVCQK  273 (273)
T ss_pred             CCCCCCCCCCEEEEEECCCCCCC-CCCCCEEEEEEECCCCCEECCCCCC
T ss_conf             56898774312689855789988-7458876799986876776878789