HHsearch alignment for GI: 254780625 and conserved domain: PRK13945

>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional.
Probab=100.00  E-value=0  Score=568.33  Aligned_cols=273  Identities=37%  Similarity=0.598  Sum_probs=249.4

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCC-CC-CCCHHHHHHHCCCEEEEEEECCEEEEEEECCCC------CCCC
Q ss_conf             967643678898899986797788999648332-65-787789997289889999605308999503553------1001
Q gi|254780625|r    1 MPELPEVEIIRRNLMMVMKNMTVTDICLHRKNL-RF-DFPHHFSAATRGKKIIDVSRRAKYLLIELEGNL------SIIV   72 (289)
Q Consensus         1 MPElPEVe~~~~~l~~~l~g~~I~~V~~~~~~~-~~-~~~~~~~~~L~G~~I~~v~r~GK~l~l~l~~~~------~L~~   72 (289)
T Consensus         1 MPELPEVe~~~~~L~~~~~g~~I~~v~~~~~~~~~~~~~~~~f~~~L~G~~i~~v~RrGK~l~~~l~~~~~~~~~~~l~~   80 (283)
T PRK13945          1 MPELPEVETVRRGLEQLLLNFIIKGVEVLRERTIASPGGVEEFIKGLQGSLIGKWHRRGKYLLASLKKEGSENSAGWLGV   80 (283)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHCCCCEEEEEEEEEEEEEEEECCCCCCCCCCEEEE
T ss_conf             98468899999999998689989899990773312889979999764898997887678999998047655566757999


Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEECCCCCC--HHHCCCCCCCCCCCCCCC
Q ss_conf             525532799814785422458766338999706887604899981587664100145530--100532356555332211
Q gi|254780625|r   73 HLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDLVETSL--KYQYPPLRTLGPEPADNS  150 (289)
Q Consensus        73 HlgM~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG~~~~~~~~~--~~~~~~l~~lGpD~l~~~  150 (289)
T Consensus        81 HLgMtG~~~~~~~~----~~~~kh~~~~l~~~~~~-----~l~f~D~R~FG~v~~~~~~~~~~~~~~~l~~LGpDpl~~~  151 (283)
T PRK13945         81 HLRMTGQFLWVEQD----TPPCKHTRVRLFNKKNQ-----ELRFVDIRSFGQMWWVPPGLSPESIITGLKKLGPEPFSPE  151 (283)
T ss_pred             EEEEEEEEEEECCC----CCCCCCEEEEEEECCCC-----EEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf             86312478873687----78998259999979998-----8999970225458995587455666677763398711232


Q ss_pred             CHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10678887420145421001112654356413689999998717877831222200101589999999987887676542
Q gi|254780625|r  151 FNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAID  230 (289)
Q Consensus       151 ~~~~~~~~~l~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~~vl~~a~~  230 (289)
T Consensus       152 ~~~~~~~~~l~~~~~~IK~~LlDQ~~iaGIGNiyadEiLf~a~I~P~~~~~~Ls~~e------~~~L~~~i~~vL~~ai~  225 (283)
T PRK13945        152 FNVEYLKKKLKGRTRSIKTALLDQSIVAGIGNIYADESLFKAGIRPTTEAGTLKKNQ------LERLREAIVEVLKTSIG  225 (283)
T ss_pred             CCHHHHHHHHHHCCCCCCEEEECCCEECCCCHHHHHHHHHHCCCCCCCCCCCCCHHH------HHHHHHHHHHHHHHHHH
T ss_conf             689999988752675435177518852345499999999985999778603089999------99999999999999998


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCC
Q ss_conf             18875531116778778741331665738771078778878999987812063877679
Q gi|254780625|r  231 AGGSSLRDYVHIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK  289 (289)
Q Consensus       231 ~gG~~~~~~~~~~g~~g~~~~~~~vy~r~g~~C~~~CG~~I~~~~~~gR~ty~Cp~CQk  289 (289)
T Consensus       226 ~ggtt~~d~~~~~g~~g~~~~~~~Vy~r~g~~C-~~Cg~~I~~~~~~gR~t~~CP~CQk  283 (283)
T PRK13945        226 AGGTTFSDFRDLEGVNGNYGGQAWVYRRTGQPC-RKCGTPIERIKLAGRSTHWCPNCQK  283 (283)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC-CCCCCEEEEEEECCCCCEECCCCCC
T ss_conf             489845013477787688775388967898948-9999888899999975788921149