HHsearch alignment for GI: 254780625 and conserved domain: PRK13945
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional.
Probab=100.00 E-value=0 Score=568.33 Aligned_cols=273 Identities=37% Similarity=0.598 Sum_probs=249.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCC-CC-CCCHHHHHHHCCCEEEEEEECCEEEEEEECCCC------CCCC
Q ss_conf 967643678898899986797788999648332-65-787789997289889999605308999503553------1001
Q gi|254780625|r 1 MPELPEVEIIRRNLMMVMKNMTVTDICLHRKNL-RF-DFPHHFSAATRGKKIIDVSRRAKYLLIELEGNL------SIIV 72 (289)
Q Consensus 1 MPElPEVe~~~~~l~~~l~g~~I~~V~~~~~~~-~~-~~~~~~~~~L~G~~I~~v~r~GK~l~l~l~~~~------~L~~ 72 (289)
T Consensus 1 MPELPEVe~~~~~L~~~~~g~~I~~v~~~~~~~~~~~~~~~~f~~~L~G~~i~~v~RrGK~l~~~l~~~~~~~~~~~l~~ 80 (283)
T PRK13945 1 MPELPEVETVRRGLEQLLLNFIIKGVEVLRERTIASPGGVEEFIKGLQGSLIGKWHRRGKYLLASLKKEGSENSAGWLGV 80 (283)
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHCCCCEEEEEEEEEEEEEEEECCCCCCCCCCEEEE
T ss_conf 98468899999999998689989899990773312889979999764898997887678999998047655566757999
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEECCCCCC--HHHCCCCCCCCCCCCCCC
Q ss_conf 525532799814785422458766338999706887604899981587664100145530--100532356555332211
Q gi|254780625|r 73 HLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDLVETSL--KYQYPPLRTLGPEPADNS 150 (289)
Q Consensus 73 HlgM~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG~~~~~~~~~--~~~~~~l~~lGpD~l~~~ 150 (289)
T Consensus 81 HLgMtG~~~~~~~~----~~~~kh~~~~l~~~~~~-----~l~f~D~R~FG~v~~~~~~~~~~~~~~~l~~LGpDpl~~~ 151 (283)
T PRK13945 81 HLRMTGQFLWVEQD----TPPCKHTRVRLFNKKNQ-----ELRFVDIRSFGQMWWVPPGLSPESIITGLKKLGPEPFSPE 151 (283)
T ss_pred EEEEEEEEEEECCC----CCCCCCEEEEEEECCCC-----EEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 86312478873687----78998259999979998-----8999970225458995587455666677763398711232
Q ss_pred CHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10678887420145421001112654356413689999998717877831222200101589999999987887676542
Q gi|254780625|r 151 FNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAID 230 (289)
Q Consensus 151 ~~~~~~~~~l~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~~vl~~a~~ 230 (289)
T Consensus 152 ~~~~~~~~~l~~~~~~IK~~LlDQ~~iaGIGNiyadEiLf~a~I~P~~~~~~Ls~~e------~~~L~~~i~~vL~~ai~ 225 (283)
T PRK13945 152 FNVEYLKKKLKGRTRSIKTALLDQSIVAGIGNIYADESLFKAGIRPTTEAGTLKKNQ------LERLREAIVEVLKTSIG 225 (283)
T ss_pred CCHHHHHHHHHHCCCCCCEEEECCCEECCCCHHHHHHHHHHCCCCCCCCCCCCCHHH------HHHHHHHHHHHHHHHHH
T ss_conf 689999988752675435177518852345499999999985999778603089999------99999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCC
Q ss_conf 18875531116778778741331665738771078778878999987812063877679
Q gi|254780625|r 231 AGGSSLRDYVHIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 (289)
Q Consensus 231 ~gG~~~~~~~~~~g~~g~~~~~~~vy~r~g~~C~~~CG~~I~~~~~~gR~ty~Cp~CQk 289 (289)
T Consensus 226 ~ggtt~~d~~~~~g~~g~~~~~~~Vy~r~g~~C-~~Cg~~I~~~~~~gR~t~~CP~CQk 283 (283)
T PRK13945 226 AGGTTFSDFRDLEGVNGNYGGQAWVYRRTGQPC-RKCGTPIERIKLAGRSTHWCPNCQK 283 (283)
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC-CCCCCEEEEEEECCCCCEECCCCCC
T ss_conf 489845013477787688775388967898948-9999888899999975788921149