HHsearch alignment for GI: 254780625 and conserved domain: TIGR00577

>TIGR00577 fpg formamidopyrimidine-DNA glycosylase; InterPro: IPR000191 Formamidopyrimidine-DNA glycosylase (3.2.2.23 from EC) (Fapy-DNA glycosylase) (gene fpg) is a bacterial enzyme involved in DNA repair and which excise oxidized purine bases to release 2,6-diamino-4-hydroxy-5N-methylformamido- pyrimidine (Fapy) and 7,8-dihydro-8-oxoguanine (8-OxoG) residues. In addition to its glycosylase activity, FPG can also nick DNA at apurinic/apyrimidinic sites (AP sites). FPG is a monomeric protein of about 32 Kd which binds and require zinc for its activity. The C-terminal region is the zinc binding site in the enzyme where four conserved and essential cysteines are located ..
Probab=100.00  E-value=0  Score=610.67  Aligned_cols=273  Identities=38%  Similarity=0.673  Sum_probs=259.6

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCEEEEEEECCCC--CCCCCCHHHHHHHCCCEEEEEEECCEEEEEEECCCC------CCCC
Q ss_conf             96764367889889998679778899964833--265787789997289889999605308999503553------1001
Q gi|254780625|r    1 MPELPEVEIIRRNLMMVMKNMTVTDICLHRKN--LRFDFPHHFSAATRGKKIIDVSRRAKYLLIELEGNL------SIIV   72 (289)
Q Consensus         1 MPElPEVe~~~~~l~~~l~g~~I~~V~~~~~~--~~~~~~~~~~~~L~G~~I~~v~r~GK~l~l~l~~~~------~L~~   72 (289)
T Consensus         1 MPELPEVETvrR~L~~~~~gktI~~V~V~~~~~~~~~~~~~~l~~~L~g~~i~~~~RRGKYLl~~L~~~~~~~~ag~lv~   80 (292)
T TIGR00577         1 MPELPEVETVRRGLEPLVLGKTIKSVEVVLRRVVKRPAGVEDLQKELLGQTILSIQRRGKYLLFELDDGVFQFMAGALVS   80 (292)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCEEEEECCCEEEEEEEECCCEEECCCEEEEE
T ss_conf             99861289987633434068510148995262100478858999874797688603330456764057700015404788


Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCC--CEECCCCCCHHHCCCCCCCCCCCC-CC
Q ss_conf             525532799814785422458766338999706887604899981587664--100145530100532356555332-21
Q gi|254780625|r   73 HLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFG--FMDLVETSLKYQYPPLRTLGPEPA-DN  149 (289)
Q Consensus        73 HlgM~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG--~~~~~~~~~~~~~~~l~~lGpD~l-~~  149 (289)
T Consensus        81 HLrM~G~y~~~~~~~~~---~~kH~hv~~~f~dG~-----~L~y~D~R~FG~~~~~l~~~~~~~~~~~l~~LGpEPly~~  152 (292)
T TIGR00577        81 HLRMEGKYRLEEVPDAP---PDKHVHVDFLFDDGT-----ELRYHDPRKFGKVTWLLLDRGEVEASLLLAKLGPEPLYSE  152 (292)
T ss_pred             EEEEEEEEEECCCCCCC---CCCCCEEEEEECCCC-----EEEEECCCEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCH
T ss_conf             43312221101178788---888656999986996-----7887557635568987167753012013667288888652


Q ss_pred             CCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11067888742014542100111265435641368999999871787783122220010158999999998788767654
Q gi|254780625|r  150 SFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAI  229 (289)
Q Consensus       150 ~~~~~~~~~~l~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~~vl~~a~  229 (289)
T Consensus       153 ~F~~~~l~~~l~~~~r~~K~~LLDQ~~V~G~GNIYADE~LF~A~ihP~~~A~~L~~~~------~~~L~~~i~~vL~~Ai  226 (292)
T TIGR00577       153 DFTAEYLFEKLAKSKRKIKTALLDQRLVAGLGNIYADEVLFRAGIHPERLANQLSKEE------CELLHKAIKEVLRKAI  226 (292)
T ss_pred             HCCHHHHHHHHHHCCCHHHHHHHCCCEEEEEHHHHHHHHHHHHCCCCCHHHHCCCHHH------HHHHHHHHHHHHHHHH
T ss_conf             1173899999874040345686548757651010666899873688101000158889------9999999999999998


Q ss_pred             HCCCCCCCC--CCCCCCCCCCCHHHEEEECCCCCCCCC-CCCCEEEEEEEC-----CCCEEECCCCC
Q ss_conf             218875531--116778778741331665738771078-778878999987-----81206387767
Q gi|254780625|r  230 DAGGSSLRD--YVHIDGSIGYFQNAFSVYGKTGEPCLS-NCGQMIRRIVQA-----GRSTFYCTYCQ  288 (289)
Q Consensus       230 ~~gG~~~~~--~~~~~g~~g~~~~~~~vy~r~g~~C~~-~CG~~I~~~~~~-----gR~ty~Cp~CQ  288 (289)
T Consensus       227 e~GGtt~~~q~f~~~~G~~G~fq~~l~VYGrkg~pC-~a~CGt~I~k~~~~LYGkDgRgthfCp~CQ  292 (292)
T TIGR00577       227 EAGGTTIRDQLFVQSDGENGYFQQELQVYGRKGEPC-RARCGTTIEKEKVGLYGKDGRGTHFCPQCQ  292 (292)
T ss_pred             HCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCC-CCCCCCEEEEEEEECCCCCCCCEECCCCCC
T ss_conf             648970002002304787875344210025638834-367884478876530151675101268889