HHsearch alignment of GI: 254780625 and MMDB domain: 1mu5_A_230-311

>1mu5_A (A:230-311) Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae}
Probab=99.84  E-value=8.8e-22  Score=159.57  Aligned_cols=81  Identities=15%  Similarity=0.158  Sum_probs=76.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             55533221110678887420145421001112654356413689999998717877831222200101589999999987
Q gi|254780625|r  142 LGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEI  221 (289)
Q Consensus       142 lGpD~l~~~~~~~~~~~~l~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i  221 (289)
                      |||||+  +++.+.|.+.+++++++||.+||||++|+||||+|++||||+|||||.+++++|+++|      +.+|++++
T Consensus         1 lgpdpl--~~~~~~~~~~l~~~~~~ik~~lldq~~~~GiGn~~a~EiL~~agi~P~~~~~~Ls~~e------~~~L~~~~   72 (82)
T 1mu5_A            1 VKPHPY--GVDREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEE------ITRLVETF   72 (82)
T ss_dssp             CCCCGG--GCCHHHHHHHSTTCSSCCBHHHHHTTSSSSCCHHHHHHHHHHTTCCTTSBGGGCCTTH------HHHHHHHH
T ss_pred             CCCCCC--CCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHH------HHHHHHHH
T ss_conf             557654--0246789999987025552899998651555768999999971899666756599999------99999999


Q ss_pred             HHHHHHHHH
Q ss_conf             887676542
Q gi|254780625|r  222 QKVLIDAID  230 (289)
Q Consensus       222 ~~vl~~a~~  230 (289)
                      +.++..|+.
T Consensus        73 ~~v~~~a~~   81 (82)
T 1mu5_A           73 KKYEDFRSP   81 (82)
T ss_dssp             HHCCCCCCC
T ss_pred             HHHCCCCCC
T ss_conf             863035679