HHsearch alignment of GI: 254780625 and MMDB domain: 1mu5_A_230-311
>1mu5_A (A:230-311) Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae}
Probab=99.84 E-value=8.8e-22 Score=159.57 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=76.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 55533221110678887420145421001112654356413689999998717877831222200101589999999987
Q gi|254780625|r 142 LGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEI 221 (289)
Q Consensus 142 lGpD~l~~~~~~~~~~~~l~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i 221 (289)
|||||+ +++.+.|.+.+++++++||.+||||++|+||||+|++||||+|||||.+++++|+++| +.+|++++
T Consensus 1 lgpdpl--~~~~~~~~~~l~~~~~~ik~~lldq~~~~GiGn~~a~EiL~~agi~P~~~~~~Ls~~e------~~~L~~~~ 72 (82)
T 1mu5_A 1 VKPHPY--GVDREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEE------ITRLVETF 72 (82)
T ss_dssp CCCCGG--GCCHHHHHHHSTTCSSCCBHHHHHTTSSSSCCHHHHHHHHHHTTCCTTSBGGGCCTTH------HHHHHHHH
T ss_pred CCCCCC--CCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHH------HHHHHHHH
T ss_conf 557654--0246789999987025552899998651555768999999971899666756599999------99999999
Q ss_pred HHHHHHHHH
Q ss_conf 887676542
Q gi|254780625|r 222 QKVLIDAID 230 (289)
Q Consensus 222 ~~vl~~a~~ 230 (289)
+.++..|+.
T Consensus 73 ~~v~~~a~~ 81 (82)
T 1mu5_A 73 KKYEDFRSP 81 (82)
T ss_dssp HHCCCCCCC
T ss_pred HHHCCCCCC
T ss_conf 863035679